Psyllid ID: psy16563

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFKHSL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHcccccccccccccccccHHHHccccccccccEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHcccccccEEEEEccccccHHHHHHHHHHHHcccEcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHccccccHcccccccccEEccccccccccEEEEEEccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHcccHHHccc
Coil and Loop (DISEMBL)
msskyqlfaqyPSLVSVLSILKsaqysslpeVEELLNIYSRInetndqdsgvgddrkypLIVFEgldgcgkshtSQTVAKKLKASlkstppssimsLREKFDAHDSLLRRAYYSLGNYIAAQDIKqdlqkqpvvmdrfwhstsaygMANElvknsdlklpdedddiyswpkdlmkpdLVIYLTVSEAIRLQRLsrrknftleeNELKKNAKFRELLTTIYRnmnnpelvfvdnseksvhesSNDIVELIHnlpmfkhsl
Flexible Loop (DISEMBL)
msskyqlfaqYPSLVSVLSILKSAQYSSLPEVEELLNIYSRInetndqdsgvgdDRKYPLIVFEGLDGCGKSHTSQTVAKKLkaslkstppssimslrEKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAirlqrlsrrknftleenelkknakfRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELihnlpmfkhsl
Low Complexity Region (SEG)
MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFKHSL
Disordered region (IsUnstruct)
****YQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRIN**********DDRKYPLIVFEGLDGCG*******************************DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD************IVELIHN********
Disordered Region (DISOPRED)
******L*AQYPSLVSVLSILKSAQYSSLPEVEELLNIY********************LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI*****************LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFKH**
Disordered Region (DISEMBL)
MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS********NDIVELIHNLPMFKHSL
Disordered Region (DISPRO)
***KYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF***L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFKHSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q5EBM0	449	UMP-CMP kinase 2, mitocho	yes	N/A	0.745	0.429	0.438	5e-34
Q3U5Q7	447	UMP-CMP kinase 2, mitocho	yes	N/A	0.745	0.431	0.413	2e-30
Q57741	188	Probable thymidylate kina	yes	N/A	0.671	0.925	0.282	3e-10
Q04UJ2	205	Thymidylate kinase OS=Lep	yes	N/A	0.501	0.634	0.293	6e-07
Q04YY2	205	Thymidylate kinase OS=Lep	yes	N/A	0.501	0.634	0.293	7e-07
A4FXE4	199	Probable thymidylate kina	yes	N/A	0.671	0.874	0.278	7e-07
Q6L016	202	Probable thymidylate kina	yes	N/A	0.498	0.638	0.290	1e-06
Q8F7Y6	204	Thymidylate kinase OS=Lep	yes	N/A	0.509	0.647	0.284	5e-06
Q72NL9	204	Thymidylate kinase OS=Lep	yes	N/A	0.509	0.647	0.284	5e-06
A6VFY2	199	Probable thymidylate kina	yes	N/A	0.683	0.889	0.282	5e-06

>sp|Q5EBM0|CMPK2_HUMAN UMP-CMP kinase 2, mitochondrial OS=Homo sapiens GN=CMPK2 PE=1 SV=3

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           K+ ++  EGLD  GK+  +Q+VA  LKA L  +PPS I   R+ FD   +++RRA+YSLG
Sbjct: 251 KFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLG 310

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
           NYI A +I ++  K PV++DR+WHST+ Y +A E V      LP     +Y WP+DL+KP
Sbjct: 311 NYIVASEIAKESAKSPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKP 369

Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
           DL++ LTVS   RLQRL  R    T EE EL+ N+ FR+ +   Y+ M NP    VD S 
Sbjct: 370 DLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDAS- 428

Query: 236 KSVHESSNDIVELIHN 251
            S  +    ++ LI N
Sbjct: 429 PSREKVLQTVLSLIQN 444

May participate in dUTP and dCTP synthesis in mitochondria. Is able to phosphorylate dUMP, dCMP, CMP, UMP and monophosphates of the pyrimidine nucleoside analogs ddC, dFdC, araC, BVDU and FdUrd with ATP as phosphate donor. Efficacy is highest for dUMP followed by dCMP; CMP and UMP are poor substrates. May be involved in mtDNA depletion caused by long term treatment with ddC or other pyrimidine analogs.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 1EC: 4

>sp|Q3U5Q7|CMPK2_MOUSE UMP-CMP kinase 2, mitochondrial OS=Mus musculus GN=Cmpk2 PE=2 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           K+ +I  EGLD  GK+  +Q+V++ LKA L  +PP  I   R+ FD   +++RRA+YSLG
Sbjct: 251 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 310

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
           NY+ A +I ++    PV++DR+WHST+ Y +A E V      LP     +Y WP DL+KP
Sbjct: 311 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 369

Query: 177 DLVIYLTVSEAIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
           DLV+ LTV+   R++RL  R +  T EE EL+ N  FR+ +   Y+ M NP    VD S 
Sbjct: 370 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDAS- 428

Query: 236 KSVHESSNDIVELIHN 251
            S       ++ELI +
Sbjct: 429 PSRETVLQKVLELIQS 444

May participate in dUTP and dCTP synthesis in mitochondria. Is able to phosphorylate dUMP, dCMP, CMP, UMP and monophosphates of the pyrimidine nucleoside analogs ddC, dFdC, araC, BVDU and FdUrd with ATP as phosphate donor.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q57741|KTHY_METJA Probable thymidylate kinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=tmk PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 28/202 (13%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
            IVFEG+DG GK+  S+ +AKK+ A     P +S++   +RE       +  +   +L  
Sbjct: 6   FIVFEGIDGSGKTTQSKLLAKKMDAFWTYEPSNSLVGKIIREILSGKTEVDNK---TLAL 62

Query: 118 YIAAQD------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
             AA        IK++L+K+ VV DR+ +S+ AY     + +N           I S  +
Sbjct: 63  LFAADRIEHTKLIKEELKKRDVVCDRYLYSSIAYQSVAGVDENF----------IKSINR 112

Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
             +KPD+V  L V     L+R+  +  F  ++   K   K+ EL             + +
Sbjct: 113 YALKPDIVFLLIVDIETALKRVKTKDIFEKKDFLKKVQDKYLEL-------AEEYNFIVI 165

Query: 232 DNSEKSVHESSNDIVELIHNLP 253
           D ++KSV E  N+I+  + N+P
Sbjct: 166 DTTKKSVEEVHNEIIGYLKNIP 187

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q04UJ2|KTHY_LEPBJ Thymidylate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tmk PE=3 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
            +VFEG+DG GKS   +++ +KL      S+  T P++  +   LR+       L R+  
Sbjct: 8   FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67

Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
             A+ +       Q+I   L+  + V++DR+ +ST+AY   ++L+  + ++         
Sbjct: 68  IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119

Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
           +  K+   PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149

Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.

Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q04YY2|KTHY_LEPBL Thymidylate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tmk PE=3 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 20/150 (13%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLK----ASLKSTPPSSIMS---LREKFDAHDSLLRR-- 110
            +VFEG+DG GKS   +++ +KL      S+  T P++  +   LR+       L R+  
Sbjct: 8   FVVFEGIDGSGKSTLCKSLTEKLTERGIPSVNFTEPTNFETGKYLRKFLRGEIDLERKEQ 67

Query: 111 --AYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
             A+ +       Q+I   L+  + V++DR+ +ST+AY   ++L+  + ++         
Sbjct: 68  IDAFLNDREESLRQNILPSLESGKNVLLDRYMYSTAAYQSGDDLLPETIIE--------K 119

Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
           +  K+   PDL+ YL ++ AI L+RLS+RK
Sbjct: 120 NLKKNFKIPDLLFYLDLNPAIALERLSQRK 149

Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|A4FXE4|KTHY_METM5 Probable thymidylate kinase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tmk PE=3 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 38/212 (17%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
            IVFEG+DGCGK+  ++ +A+KL A     P    +  S+RE              +L  
Sbjct: 4   FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSGSQCQKE----TLAL 59

Query: 118 YIAAQ------DIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
             AA       +I++DL+K  VV DR+ +S+  Y ++  + K          D IY+   
Sbjct: 60  LFAADRVEHVFNIEEDLKKSHVVSDRYVYSSIIYQISQGISK----------DFIYTIND 109

Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE---- 227
               PDLV+ L V     L+R+  R+    E+ E++K  K        Y N+ N E    
Sbjct: 110 YAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQKKIK------EGYYNLINSEDKKF 163

Query: 228 -----LVFVDNSEKSVHESSNDIVE-LIHNLP 253
                 + V+ + KS+H+  ++I+  +I  +P
Sbjct: 164 MPKYGFIIVNTTSKSIHQVFDEILNAIIDKIP 195

Methanococcus maripaludis (strain C5 / ATCC BAA-1333) (taxid: 402880)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q6L016|KTHY_PICTO Probable thymidylate kinase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=tmk PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS--LREKFDAHDSLLRRAYYSLGN 117
            I  EG+DG GK+  +  +A      L   P        +   ++   S++    ++L  
Sbjct: 8   FIAIEGIDGSGKTTLAGDIASYTGFYLTREPTDRFCYDYIEADYNDESSIINFFLFTLDR 67

Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAY---GMANELVKNSDLKLPDEDDDIYSWPKD-- 172
           Y+  ++IK  L    V+ DR+  S+ AY   GM     KN D  +        SW  D  
Sbjct: 68  YMHQKEIKNHLI-NGVISDRYVFSSIAYQGSGMEKRF-KNMDETI--------SWMLDVS 117

Query: 173 --LMKPDLVIYLTVSEAIRLQRLSRRKN 198
             ++ PDL+IYL +   I L+RL+ RKN
Sbjct: 118 RFIIMPDLIIYLKIDPGIALKRLNLRKN 145

Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) (taxid: 263820)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q8F7Y6|KTHY_LEPIN Thymidylate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=tmk PE=3 SV=2

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)

Query: 55  DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
           ++K   +VFEG+DG GKS   +++ +KL   ++   PS+  +     +    L +  R  
Sbjct: 3   NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59

Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
             LG    I A      + +KQ++       + V++DR+ +ST+AY   ++L     LK 
Sbjct: 60  IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118

Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
                   +  ++   PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149

Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.

Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q72NL9|KTHY_LEPIC Thymidylate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=tmk PE=3 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 26/158 (16%)

Query: 55  DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAY 112
           ++K   +VFEG+DG GKS   +++ +KL   ++   PS+  +     +    L +  R  
Sbjct: 3   NKKPIFVVFEGIDGSGKSTLCKSLTEKL---IELGIPSAAFTEPTNLETGKYLRKFLRGE 59

Query: 113 YSLGN--YIAA------QDIKQDL-----QKQPVVMDRFWHSTSAYGMANELVKNSDLKL 159
             LG    I A      + +KQ++       + V++DR+ +ST+AY   ++L     LK 
Sbjct: 60  IELGKEEQIEAFLNDREESLKQNILPALNSDKNVLLDRYMYSTAAYQSGDDLSPEMILK- 118

Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
                   +  ++   PDL+ YL +S +I L+RL+RRK
Sbjct: 119 -------KNLNRNFKIPDLLFYLDLSPSIALERLNRRK 149

Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.

Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|A6VFY2|KTHY_METM7 Probable thymidylate kinase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tmk PE=3 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 32/209 (15%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--SLREKFDAHDSLLRRAYYSLGN 117
            IVFEG+DGCGK+  ++ +A+KL A     P    +  S+RE      S  ++   +L  
Sbjct: 4   FIVFEGIDGCGKTTQAKLIAEKLNAKFTFEPTDGKIGKSIREILSG--SKCQKETLAL-- 59

Query: 118 YIAAQD-------IKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
            + A D       I++DL+K  VV DR+ +S+  Y M+  + K          D IY+  
Sbjct: 60  -LFAADRVEHVSKIEEDLKKSHVVSDRYVYSSIVYQMSQGIPK----------DFIYTIN 108

Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN---PE 227
                PDLV+ L V     L+R+  R+    E+ E++K  K +E   ++  + N    P+
Sbjct: 109 DYAKTPDLVVLLDVDLNEALKRMESREKEIFEKIEIQK--KIKEGYYSLINSENEKFMPK 166

Query: 228 --LVFVDNSEKSVHESSNDIV-ELIHNLP 253
              + +D + KS+ +  ++I+  +I  +P
Sbjct: 167 YGFIIIDTTSKSITQVFDEILNAIIDKIP 195

Methanococcus maripaludis (strain C7 / ATCC BAA-1331) (taxid: 426368)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
226372878	424	Probable thymidylate kinase 1 [Rana cate	0.826	0.504	0.435	1e-43
270004399	211	hypothetical protein TcasGA2_TC003748 [T	0.783	0.962	0.448	1e-43
198431808	420	PREDICTED: similar to thymidylate kinase	0.876	0.540	0.401	4e-41
301611086	459	PREDICTED: UMP-CMP kinase 2, mitochondri	0.833	0.470	0.436	3e-37
351712282	232	UMP-CMP kinase 2, mitochondrial, partial	0.606	0.676	0.459	3e-36
410898104	416	PREDICTED: UMP-CMP kinase 2, mitochondri	0.841	0.524	0.387	4e-35
297480629	447	PREDICTED: UMP-CMP kinase 2, mitochondri	0.830	0.480	0.404	4e-35
297460075	447	PREDICTED: UMP-CMP kinase 2, mitochondri	0.830	0.480	0.404	5e-35
348531575	421	PREDICTED: UMP-CMP kinase 2, mitochondri	0.760	0.467	0.394	5e-35
327261283	300	PREDICTED: UMP-CMP kinase 2, mitochondri	0.772	0.666	0.397	9e-35

>gi|226372878|gb|ACO52064.1| Probable thymidylate kinase 1 [Rana catesbeiana]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 11/225 (4%)

Query: 9   AQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDG 68
           A Y SL  VLS+L+ +    +PE E+LL      N        + +   +P+IV EGLD 
Sbjct: 188 AVYSSLQDVLSVLRESA-KVIPEAEKLLKCMDLGN--------IPEKGSHPVIVIEGLDA 238

Query: 69  CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
            GKS  ++++ + LKA+L  +PP SI   R+ FD   SL++RAYY+L NY+AA DI +  
Sbjct: 239 TGKSTLTESLKQHLKATLLRSPPDSISRWRKTFDDETSLIKRAYYALSNYVAAVDIAKAS 298

Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
           +  PV++DRFWHST+AY +A E+  N    LPD    +Y WP+DL+KPDLVI LTVS+  
Sbjct: 299 EVSPVIVDRFWHSTAAYAIATEIGGNIQ-NLPDHHHVVYQWPEDLLKPDLVILLTVSDEE 357

Query: 189 RLQRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
           R+ R+ +R    T EE EL+ N+ FR+ +   YR M NP  V +D
Sbjct: 358 RIHRIRKRGLQETQEEKELEANSMFRQKVEEAYRRMENPGCVVID 402

Source: Rana catesbeiana

Species: Rana catesbeiana

Genus: Rana

Family: Ranidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270004399|gb|EFA00847.1| hypothetical protein TcasGA2_TC003748 [Tribolium castaneum]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 136/205 (66%), Gaps = 2/205 (0%)

Query: 11  YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
           Y S  SVL++L + +  ++  VE LL +Y+   + + + S     + +PLI+ EGLDGCG
Sbjct: 7   YRSAESVLNVLNTHKNENVQAVETLLQVYNNALKVSKEKSQDNLTKTHPLIILEGLDGCG 66

Query: 71  KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
           KS  S+ ++ KL A    TPP SI  +R+ FD H + LR AYY+LGNYIAA +    L++
Sbjct: 67  KSRISRELSSKLSAEKWCTPPESIKHIRDLFDDHPT-LRTAYYALGNYIAALECTAILKQ 125

Query: 131 QPVVMDRFWHSTSAYGMANELVKNSD-LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIR 189
           +PVVMDR+WHST+AY +A  +  +S   ++P E D  Y WP+DL++P +VI+L V E +R
Sbjct: 126 KPVVMDRYWHSTAAYAIAQAVYDSSGATEMPPEGDSFYKWPQDLLQPSIVIFLDVDEDVR 185

Query: 190 LQRLSRRKNFTLEENELKKNAKFRE 214
           L+RLSRRK  T +E+ LK + +FR+
Sbjct: 186 LERLSRRKTTTTQEDLLKNSKQFRD 210

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198431808|ref|XP_002124573.1| PREDICTED: similar to thymidylate kinase family LPS-inducible member [Ciona intestinalis]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 141/244 (57%), Gaps = 17/244 (6%)

Query: 11  YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGD----DRKYPLIVFEGL 66
           Y     V S+L +  + S+ EV+EL  IY         D  + +     R +P+IV EGL
Sbjct: 181 YHDQARVQSVLDT--FKSMNEVQELKEIY---------DGKMLNIKPLKRDHPIIVIEGL 229

Query: 67  DGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ 126
           D  GKS  ++ +AK+L    + +P   ++ LR+ FD+H  LLRRAYY++GNY  A  +  
Sbjct: 230 DATGKSTLTENLAKRLNGCARKSPQDCVLHLRKTFDSHFQLLRRAYYAIGNYAFAAQVLH 289

Query: 127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSE 186
           D Q  PVV DRFWHST+AY +A ++    +  LP     +YSWP DL+KPD+VI LT+S+
Sbjct: 290 DAQSGPVVCDRFWHSTAAYAIATDVKVGDETHLPPARHWVYSWPPDLLKPDIVILLTISD 349

Query: 187 AIRLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDI 245
            +R  RL  R    T EE  ++K+  FR+ +  +Y+ M+NP LV +D S  S  E  N  
Sbjct: 350 ELRRCRLEGRNTEKTDEEIRMEKSRLFRQRIAEVYKRMDNPALVELDAS-GSAEELCNKA 408

Query: 246 VELI 249
           VEL+
Sbjct: 409 VELL 412

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301611086|ref|XP_002935074.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Xenopus (Silurana) tropicalis]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 133/227 (58%), Gaps = 11/227 (4%)

Query: 17  VLSILKSAQYSSLPEVEELLNIYS-------RINETNDQ-DSGVGDDRKYPLIVFEGLDG 68
            L+IL SA Y SL     +L   S       RI E  DQ D+G    R YP+IV EGLD 
Sbjct: 215 ALNILLSAVYYSLSSARTVLQECSACIPEATRILELLDQCDTGTKKGR-YPVIVIEGLDA 273

Query: 69  CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
            GKS  ++++   LKA+L  +PP  I   R+ FD   SL++RAYY+ GNYI A +I +  
Sbjct: 274 TGKSTLTESLRDCLKATLLRSPPDCISKWRKTFDDEPSLIKRAYYAAGNYIGACEIAKAS 333

Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
              PV++DR+WHST+AY +A E+  N    LP    DIY WP+DL++PDLVI LTVS+  
Sbjct: 334 MDSPVIVDRYWHSTAAYAIATEIGGNLP-SLPHCGHDIYQWPQDLLRPDLVILLTVSDEE 392

Query: 189 RLQRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
           R+ R+  R    T EE EL+ N  FR  +   Y+ + NP+ V +D S
Sbjct: 393 RMLRMRGRGLEETKEEKELESNTMFRLKVEEAYKRIENPQCVIIDAS 439

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351712282|gb|EHB15201.1| UMP-CMP kinase 2, mitochondrial, partial [Heterocephalus glaber]

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 108/159 (67%), Gaps = 2/159 (1%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           K+P+IV EGLD  GK+  +++++K+L A L  +PPS +   R+ FD   S++RRA+YSLG
Sbjct: 74  KFPVIVIEGLDATGKTTVTRSISKELGAVLLQSPPSCMGQWRKIFDEEPSIIRRAFYSLG 133

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
           NYI A +I ++  + PV++DR+WHST+ Y +A EL       LP   + +Y WP+DL++P
Sbjct: 134 NYIVASEIAEESTRSPVIVDRYWHSTATYAIATELSGGLQ-HLPPAHNSVYQWPQDLLRP 192

Query: 177 DLVIYLTVSEAIRLQRLSRRK-NFTLEENELKKNAKFRE 214
           DLV+ LTVS   R+QRL  R    T EE+EL+ N+ FR+
Sbjct: 193 DLVVLLTVSPEERMQRLQGRGLEMTREESELEANSIFRQ 231

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410898104|ref|XP_003962538.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Takifugu rubripes]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 16  SVLSILKSAQYSSLPEVEELLNIYSRIN-------ETNDQDSGVGDDRKYPLIVFEGLDG 68
           S L+I+ S  + S  E  E+L   S I        E     +G      +P+IV EGLD 
Sbjct: 171 STLNIINSDVFYSFEEAREVLKESSDIIPEAASVLELLPSRAGPRGRPDFPVIVIEGLDA 230

Query: 69  CGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL 128
            GK+  ++++   L A+L  +PP  +   RE+FD    L+RRA+Y+LGNYI A  + Q+ 
Sbjct: 231 TGKTTLTESLKGALGAALLRSPPQCLSPFRERFDQEPPLIRRAFYALGNYITADQVSQEA 290

Query: 129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI 188
            K PV++DRFWHST+AY +A   V      LPDE  ++Y WP DL++P LV+ LT+    
Sbjct: 291 SKGPVIVDRFWHSTAAYAIATA-VGGPVCNLPDEGSELYRWPSDLLEPTLVVLLTLDPEE 349

Query: 189 RLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
           R +RL  R    T EE +L  N  FR  +   YR +  P  V VD S
Sbjct: 350 RKRRLRDRGLIKTEEEQKLDHNQLFRLKVEQAYRRIVGPVCVTVDAS 396

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297480629|ref|XP_002691535.1| PREDICTED: UMP-CMP kinase 2, mitochondrial [Bos taurus] gi|296482367|tpg|DAA24482.1| TPA: UMP-CMP kinase 2-like [Bos taurus]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 10/225 (4%)

Query: 11  YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
           +P   +  ++L++   S +PE  E+L++  +  E   +        ++P+IV EGLD  G
Sbjct: 211 FPHREAACAVLEACT-SFIPEAREVLDLVDQCPEQVQKG-------RFPVIVIEGLDATG 262

Query: 71  KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
           K+  +Q+V+  LKA L  +PPS I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct: 263 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 322

Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
            PVV+DR+WHST+ Y +A E V      LP     IY WP+DL+KPDL++ LTVS   R+
Sbjct: 323 SPVVVDRYWHSTATYAIATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERM 381

Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
           QR+  R    T EE EL+ N+ FR+ +   Y+ M NP    VD S
Sbjct: 382 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 426

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297460075|ref|XP_001252651.2| PREDICTED: UMP-CMP kinase 2, mitochondrial [Bos taurus]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 10/225 (4%)

Query: 11  YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
           +P   +  ++L++   S +PE  E+L++  +  E   +        ++P+IV EGLD  G
Sbjct: 211 FPHREAACAVLEACT-SFIPEAREVLDLVDQCPEQVQKG-------RFPVIVIEGLDATG 262

Query: 71  KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
           K+  +Q+V+  LKA L  +PPS I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct: 263 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 322

Query: 131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
            PVV+DR+WHST+ Y +A E V      LP     IY WP+DL+KPDL++ LTVS   R+
Sbjct: 323 SPVVVDRYWHSTATYAIATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERM 381

Query: 191 QRL-SRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
           QR+  R    T EE EL+ N+ FR+ +   Y+ M NP    VD S
Sbjct: 382 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 426

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348531575|ref|XP_003453284.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Oreochromis niloticus]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 11/208 (5%)

Query: 29  LPEVEELLNIY-SRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK 87
           +PE + +L +  SR+   N  D        +P+IV EGLD  GK+  ++++   L A+L 
Sbjct: 203 IPEAKAVLELLPSRVEARNKPD--------FPVIVIEGLDATGKTTLTESLKDTLGATLL 254

Query: 88  STPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGM 147
            +PP  +   R +FD    L+RRA+Y+LGNYI A  I ++  K PV++DRFWHST+AY +
Sbjct: 255 PSPPECLSPWRARFDQEPPLIRRAFYALGNYITADQIGREGMKTPVIVDRFWHSTAAYAI 314

Query: 148 ANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENEL 206
           A   V      LP E  ++Y WP DL +P LV+ LT+    R +RL +R +  T EE EL
Sbjct: 315 ATA-VSGPVCNLPGEGSEVYCWPSDLFQPSLVVLLTLDPEERKRRLRNRGQGKTDEEEEL 373

Query: 207 KKNAKFRELLTTIYRNMNNPELVFVDNS 234
             N  FR  +   YR ++ P  V VD S
Sbjct: 374 DHNQLFRLRVEEAYRRISGPACVTVDAS 401

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327261283|ref|XP_003215460.1| PREDICTED: UMP-CMP kinase 2, mitochondrial-like [Anolis carolinensis]

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 9/209 (4%)

Query: 27  SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
           SS+PE   +L++        D      +   +P+IV EGLD  GK+  +  V   L A L
Sbjct: 77  SSIPEARSILDLV-------DNCPVHAEKGNFPVIVIEGLDATGKTTVTSAVKDTLNAVL 129

Query: 87  KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
             TPP  +   R+ FD   +L+RRA+Y+L NYI A +I ++  K PV++DR+WHST+AY 
Sbjct: 130 LRTPPPCVSQWRKVFDDKPTLIRRAFYALTNYIVASEIAKESVKSPVIVDRYWHSTAAYA 189

Query: 147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENE 205
           +A E     +  LP     +Y WPKDL++PD+V+ LT+S   R +R L R    T EE E
Sbjct: 190 IATETSGKVE-DLPPPHHPVYCWPKDLLRPDIVLLLTLSSDERSRRLLGRGVEKTREEAE 248

Query: 206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
           L++N  FR+ +   YR M NP    VD S
Sbjct: 249 LEENRYFRQRVEEAYRRMENPGCQPVDAS 277

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|F1N2W6	447	CMPK2 "Uncharacterized protein	0.830	0.480	0.408	7.8e-39
UNIPROTKB|Q5EBM0	449	CMPK2 "UMP-CMP kinase 2, mitoc	0.891	0.514	0.388	1.9e-37
UNIPROTKB|I3LBM1	450	CMPK2 "Uncharacterized protein	0.891	0.513	0.371	1.3e-36
UNIPROTKB|I3LVR9	422	CMPK2 "Uncharacterized protein	0.891	0.547	0.371	1.3e-36
ZFIN|ZDB-GENE-040724-24	414	cmpk2 "cytidine monophosphate	0.826	0.516	0.383	1.3e-36
RGD|1305881	447	Cmpk2 "cytidine monophosphate	0.772	0.447	0.397	1.5e-35
MGI|MGI:99830	447	Cmpk2 "cytidine monophosphate	0.745	0.431	0.413	1.1e-34
UNIPROTKB|F1NN12	151	CMPK2 "Uncharacterized protein	0.555	0.953	0.414	9.4e-27
CGD|CAL0001967	224	orf19.1137 [Candida albicans (	0.710	0.821	0.288	3.1e-09
ASPGD|ASPL0000011117	223	AN8213 [Emericella nidulans (t	0.675	0.784	0.266	4.5e-06

UNIPROTKB|F1N2W6 CMPK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 92/225 (40%), Positives = 134/225 (59%)

Query:    11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
             +P   +  ++L++   S +PE  E+L++  +  E      G     ++P+IV EGLD  G
Sbjct:   211 FPHREAACAVLEACT-SFIPEAREVLDLVDQCPE--QVQKG-----RFPVIVIEGLDATG 262

Query:    71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
             K+  +Q+V+  LKA L  +PPS I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct:   263 KTTVTQSVSDSLKAVLLKSPPSCISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 322

Query:   131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
              PVV+DR+WHST+ Y +A E V      LP     IY WP+DL+KPDL++ LTVS   R+
Sbjct:   323 SPVVVDRYWHSTATYAIATE-VSGGLQHLPPIHHPIYQWPRDLLKPDLILLLTVSPEERM 381

Query:   191 QRLSRR-KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS 234
             QR+  R    T EE EL+ N+ FR+ +   Y+ M NP    VD S
Sbjct:   382 QRIEGRGMEKTREEAELETNSIFRQKVEVCYQRMENPGCHVVDAS 426

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

UNIPROTKB|Q5EBM0 CMPK2 "UMP-CMP kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 94/242 (38%), Positives = 136/242 (56%)

Query:    11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
             +P   +  ++L+    S +PE   +L++        DQ        K+ ++  EGLD  G
Sbjct:   213 FPDREAARAVLEECT-SFIPEARAVLDLV-------DQCPKQIQKGKFQVVAIEGLDATG 264

Query:    71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
             K+  +Q+VA  LKA L  +PPS I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct:   265 KTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAK 324

Query:   131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
              PV++DR+WHST+ Y +A E V      LP     +Y WP+DL+KPDL++ LTVS   RL
Sbjct:   325 SPVIVDRYWHSTATYAIATE-VSGGLQHLPPAHHPVYQWPEDLLKPDLILLLTVSPEERL 383

Query:   191 QRLSRR-KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
             QRL  R    T EE EL+ N+ FR+ +   Y+ M NP    VD S  S  +    ++ LI
Sbjct:   384 QRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENPGCHVVDASP-SREKVLQTVLSLI 442

Query:   250 HN 251
              N
Sbjct:   443 QN 444

GO:0005524 "ATP binding" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LBM1 CMPK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/242 (37%), Positives = 141/242 (58%)

Query:    11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
             +P   +  ++L++   S +PE + +L++  R  E      G     K+P+I  EGLD  G
Sbjct:   214 FPHREAARAVLEACT-SFIPEAQAVLDLVDRCPE--QVQKG-----KFPVIAIEGLDATG 265

Query:    71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
             K+  +Q+V+  LKA L  +PP+ I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct:   266 KTTVTQSVSDSLKAVLLKSPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 325

Query:   131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
              PV++DR+WHST+ Y +A+E V      LP     IY WP+DL+KPDLV+ LTVS   R+
Sbjct:   326 SPVIIDRYWHSTATYTIASE-VSGGLQHLPPTHHPIYQWPRDLLKPDLVLLLTVSPEERM 384

Query:   191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
             +R+  R    T EE EL+ ++ +R+ +   Y+ M +P    VD S  S  +    ++ +I
Sbjct:   385 KRIEGRGLERTREEVELETDSIYRQKVEVSYQRMEDPGCHVVDASP-SREKVLQTVLSII 443

Query:   250 HN 251
              N
Sbjct:   444 QN 445

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

UNIPROTKB|I3LVR9 CMPK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 90/242 (37%), Positives = 141/242 (58%)

Query:    11 YPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCG 70
             +P   +  ++L++   S +PE + +L++  R  E      G     K+P+I  EGLD  G
Sbjct:   186 FPHREAARAVLEACT-SFIPEAQAVLDLVDRCPE--QVQKG-----KFPVIAIEGLDATG 237

Query:    71 KSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK 130
             K+  +Q+V+  LKA L  +PP+ I   R+ FD   +++RRA+YSLGNYI A +I ++  K
Sbjct:   238 KTTVTQSVSDSLKAVLLKSPPACISQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESTK 297

Query:   131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRL 190
              PV++DR+WHST+ Y +A+E V      LP     IY WP+DL+KPDLV+ LTVS   R+
Sbjct:   298 SPVIIDRYWHSTATYTIASE-VSGGLQHLPPTHHPIYQWPRDLLKPDLVLLLTVSPEERM 356

Query:   191 QRLSRRK-NFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
             +R+  R    T EE EL+ ++ +R+ +   Y+ M +P    VD S  S  +    ++ +I
Sbjct:   357 KRIEGRGLERTREEVELETDSIYRQKVEVSYQRMEDPGCHVVDASP-SREKVLQTVLSII 415

Query:   250 HN 251
              N
Sbjct:   416 QN 417

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

ZFIN|ZDB-GENE-040724-24 cmpk2 "cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 86/224 (38%), Positives = 134/224 (59%)

Query:    29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
             +PE +E+L +   ++E      G G    +P+IV EGLD  GK+  ++ + + L A+L  
Sbjct:   196 IPESKEVLKL---VDEQLKTTRGNG----FPVIVIEGLDATGKTTLTEALRQSLNATLLK 248

Query:    89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
             +PP  +   R++FD+   L+RRA+Y+LGNYI A  I ++  + PV++DR+WHST+AY +A
Sbjct:   249 SPPQCLAPFRQRFDSEPPLIRRAFYALGNYITATHIAKESLRAPVIVDRYWHSTAAYAIA 308

Query:   149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL-SRRKNFTLEENELK 207
               +    +  LP  D ++Y WP+DL++PDLV+ LTVS   R++RL  R ++ T EE EL+
Sbjct:   309 TAVGGRVE-NLPKPDSELYVWPEDLLQPDLVLLLTVSPEERVRRLRDRGQDKTTEEAELE 367

Query:   208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN 251
              N  FR  +   Y+ + NP  + VD S  S  E    +  LI N
Sbjct:   368 INQLFRLKVEEAYKRIQNPSCITVDASP-SPQEVLKQVHHLIRN 410

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

RGD|1305881 Cmpk2 "cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 83/209 (39%), Positives = 124/209 (59%)

Query:    27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL 86
             S +PE  E+L++  +     +   G     K+ +I  EGLD  GK+  +Q+V++ L+A L
Sbjct:   228 SFIPEAREVLDLVDQC--PREIQKG-----KFQVIAIEGLDATGKTTLTQSVSESLQAVL 280

Query:    87 KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYG 146
               +PP  I   R+ FD   +++RRA+YSLGNY+ A +I +   K PV++DR+WHST+ Y 
Sbjct:   281 LQSPPPCISQWRKLFDDEPTIIRRAFYSLGNYLVASEIAKQSAKFPVIVDRYWHSTATYA 340

Query:   147 MANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR-KNFTLEENE 205
             +A E V      LP     +Y WP+DL+KPDLV+ LTV+   R++RL  R +  T EE E
Sbjct:   341 IATE-VSGGLQYLPPAHHPVYQWPRDLLKPDLVLLLTVNSEERVRRLQGRGQEKTKEEAE 399

Query:   206 LKKNAKFRELLTTIYRNMNNPELVFVDNS 234
             L+ N+ FR+ +   Y+ M NP    VD S
Sbjct:   400 LEVNSVFRQKVEATYQRMENPSCRLVDAS 428

GO:0004127 "cytidylate kinase activity" evidence=IEA;ISO

GO:0004798 "thymidylate kinase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006227 "dUDP biosynthetic process" evidence=IDA

GO:0006233 "dTDP biosynthetic process" evidence=IDA

GO:0009041 "uridylate kinase activity" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IEA;ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:99830 Cmpk2 "cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 81/196 (41%), Positives = 117/196 (59%)

Query:    57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
             K+ +I  EGLD  GK+  +Q+V++ LKA L  +PP  I   R+ FD   +++RRA+YSLG
Sbjct:   251 KFQVIAIEGLDATGKTTLTQSVSESLKAVLLQSPPPCISQWRKIFDDEPTIIRRAFYSLG 310

Query:   117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
             NY+ A +I ++    PV++DR+WHST+ Y +A E V      LP     +Y WP DL+KP
Sbjct:   311 NYLVASEIAKESTNFPVIVDRYWHSTATYAIATE-VSGGLQYLPPAHHPVYQWPGDLLKP 369

Query:   177 DLVIYLTVSEAIRLQRLSRR-KNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
             DLV+ LTV+   R++RL  R +  T EE EL+ N  FR+ +   Y+ M NP    VD S 
Sbjct:   370 DLVLLLTVNSEERVRRLQGRGQEKTKEEAELEANNVFRQKVEMTYQRMENPSCHLVDASP 429

Query:   236 KSVHESSNDIVELIHN 251
              S       ++ELI +
Sbjct:   430 -SRETVLQKVLELIQS 444

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=ISO

GO:0004798 "thymidylate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=ISO

GO:0006233 "dTDP biosynthetic process" evidence=ISO

GO:0009041 "uridylate kinase activity" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

UNIPROTKB|F1NN12 CMPK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/152 (41%), Positives = 93/152 (61%)

Query:    29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
             +PE   +L+I  +  E   Q  G     ++P++VFEGLD  GK+  +Q+V   L A L  
Sbjct:     8 IPEAGSVLDILEKCPE--GQRKG-----EFPVVVFEGLDATGKTTVTQSVKDALGAVLLR 60

Query:    89 TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMA 148
             +PP+ I   R  FD   + +RRA+Y+ GNYI A +I +   + PV++DR+WHST+AY +A
Sbjct:    61 SPPACISQWRTIFDEEPTPIRRAFYAAGNYILASEIAKASTQAPVIVDRYWHSTAAYTVA 120

Query:   149 NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
              E   N    LP + D +Y WP+DL+KPDLV+
Sbjct:   121 TETDGNIQ-NLPPDHDAVYKWPEDLLKPDLVL 151

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

CGD|CAL0001967 orf19.1137 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 60/208 (28%), Positives = 100/208 (48%)

Query:    60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSSIMS--LREK-FDAHDSLLRR 110
             LI+ EGLD  GKS  +  ++ KL  S       +STP   +++  L  K F   D     
Sbjct:     6 LILIEGLDRSGKSTQASILSTKLSPSKLIKFPDRSTPIGKLINEYLTNKSFTLSDQAAH- 64

Query:   111 AYYSLGNYIAAQDIKQDLQKQP--VVMDRFWHSTSAYGMA-----NELVKNSDLKLPDED 163
               +S   +  +Q I QDL  Q   +++DR+ +S  AY +A     +E +     K    +
Sbjct:    65 LLFSANRWELSQQI-QDLLNQGYFIILDRYIYSGIAYTLAKNDFHDETISQGKNKQQLNN 123

Query:   164 DD-IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKFRELLTTIYR 221
              D + S  K L KPDL ++LT+     L+ +S+RK +  E  EL++  AK ++    I  
Sbjct:   124 IDWLLSPDKGLPKPDLTLFLTLD----LEEISKRKGWGDERYELQQFQAKVKQCFLEILD 179

Query:   222 NMNNPELVFVDNSEKSVHESSNDIVELI 249
                +P +  VD   K++ + +  + E+I
Sbjct:   180 TNKDPTIRIVDVGGKTIDQVTTQLWEII 207

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IEA

ASPGD|ASPL0000011117 AN8213 [Emericella nidulans (taxid:162425)]

 Score = 126 (49.4 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 55/206 (26%), Positives = 95/206 (46%)

Query:    60 LIVFEGLDGCGKSHTSQTV----------AKKLKASLKSTPPSSIMSLREKFDAH-DSLL 108
             LIV EGLD  GKS   + +           K ++   ++TP   ++    +  +H D   
Sbjct:    13 LIVVEGLDRAGKSSQCKFLHNILQEGGRPVKYIRFPDRTTPIGKLIDGYLRGQSHLDDHS 72

Query:   109 RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
                 +S   +  AQ I+ D+     V++DR+ +S + Y  A     N  L L       +
Sbjct:    73 IHLLFSANRWEVAQSIEADIANGTSVIIDRYSYSGAVYSAAKA---NPSLSLE------W 123

Query:   168 SWPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNM 223
             +W  +  L KPDL ++L++S     +  ++R  F  E  ENE  +  + REL  TI+   
Sbjct:   124 AWQPEVGLPKPDLCLFLSISP----EEAAKRGGFGGERYENEAMQT-RVRELFNTIFDLQ 178

Query:   224 NNPELVFVDNSEKSVHESSNDIVELI 249
                ++  +D + KS+ E S DI+ ++
Sbjct:   179 RATDIRIID-AGKSLAEVSQDILNVV 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       259   0.00088  114 3  11 23  0.37    34
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.92u 0.11s 25.03t   Elapsed:  00:00:02
  Total cpu time:  24.92u 0.11s 25.03t   Elapsed:  00:00:02
  Start:  Thu Aug 15 16:38:15 2013   End:  Thu Aug 15 16:38:17 2013

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0004798 "thymidylate kinase activity" evidence=IEA;RCA

GO:0005524 "ATP binding" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
4th Layer	2.7.4.14	LOW CONFIDENCE prediction!
4th Layer	2.7.4.9	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
pfam02223	186	pfam02223, Thymidylate_kin, Thymidylate kinase	4e-19
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	1e-13
PRK13975	196	PRK13975, PRK13975, thymidylate kinase; Provisiona	3e-13
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	1e-12
TIGR00041	195	TIGR00041, DTMP_kinase, thymidylate kinase	1e-12
PRK00698	205	PRK00698, tmk, thymidylate kinase; Validated	3e-10
cd01673	193	cd01673, dNK, Deoxyribonucleoside kinase (dNK) cat	3e-06
PRK07933	213	PRK07933, PRK07933, thymidylate kinase; Validated	6e-05

>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 29/199 (14%)

Query: 63  FEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLR---RAYYSLG 116
            EGLDG GK+  ++ + ++LK        T       + EK    + LLR    +  +  
Sbjct: 1   IEGLDGAGKTTQAELLKERLKEQGIKVVLTREPGGTPIGEKIR--ELLLRNEELSPLTEA 58

Query: 117 NYIAA-------QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
              AA       + IK  L Q + V+ DR+  S+ AY           L L      + S
Sbjct: 59  LLFAADRIEHLEEKIKPALKQGKTVICDRYLFSSIAY---QGAAGGLGLDL------VLS 109

Query: 169 WPKD--LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
              D    KPDL   L V   + L+RL RR    L+E E ++    R++         + 
Sbjct: 110 LNPDVPGPKPDLTFLLDVDPEVALKRLRRRG--ELDEFEFEQLDFLRKVRERYLELAKDD 167

Query: 227 ELVFVDNSEKSVHESSNDI 245
           E + + ++  S+ E   +I
Sbjct: 168 ERILIIDASNSIEEVHEEI 186

Length = 186

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 32/166 (19%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF------DAHDSLLRRAYY 113
            IVFEG+DG GK+    T+ + L   L++     ++  RE           + LL     
Sbjct: 2   FIVFEGIDGAGKT----TLIELLAERLEARGYEVVL-TREPGGTPIGEAIRELLLDPEDE 56

Query: 114 SLGN------YIAAQDIKQDLQKQP-------VVMDRFWHSTSAY-GMANELVKNSDLKL 159
            +        + A +    +   +P       V+ DRF  S+ AY G    L        
Sbjct: 57  KMDPRAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLG------- 109

Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
               + +       +KPDL I L +   + L R+  R     +E E
Sbjct: 110 EALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQE 155

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 23/202 (11%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--------IMSLREKFDAHDSLLRRAY 112
           IVFEG+DG GK+  ++ +A+KL A     P           I+S  +      +LL    
Sbjct: 5   IVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALL---- 60

Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
           ++       ++I++DL+K+ VV DR+ +S+ AY     +          ++D IYS  + 
Sbjct: 61  FAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGI----------DEDFIYSINRY 110

Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNNPELVFV 231
             KPDLV  L V     L+R+  R     E+ E  K  + + L L    + M     + +
Sbjct: 111 AKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVI 170

Query: 232 DNSEKSVHESSNDIVELIHNLP 253
           D + KS+ E  N+I+  I +  
Sbjct: 171 DTTNKSIEEVFNEILNKIKDKI 192

Length = 196

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 45/219 (20%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLK-------------STPP-----SSIMSLREKF 101
            IV EG+DG GK+    T A+ LK  L+              TP        +++  EK 
Sbjct: 5   FIVIEGIDGAGKT----TQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKL 60

Query: 102 DAHDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNS 155
                 L     RA +        + IK  L++ + V+ DR+  S+ AY G    L    
Sbjct: 61  SPKAEALLFAADRAQH------LEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGL---- 110

Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
                D    +  +    +KPDL +YL V   + L+R+ +R     +  E + +    ++
Sbjct: 111 ---DLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE-LRDRFEKEDDEFLEKV 166

Query: 216 LTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
                         ++ +D S + + E   +I++++   
Sbjct: 167 REGYLELAAKFPERIIVIDAS-RPLEEVHEEILKILKER 204

Length = 208

>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 25/201 (12%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIM--SLRE----KFDAHDSLL 108
            IV EG+DG GK+  +  + K L+ +         P  + +   +RE    + D   +  
Sbjct: 5   FIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDK 64

Query: 109 RRAYYSLGN--YIAAQDIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDD 164
             A     +        IK  L + + V+ DR+  S+ AY G A  + ++  L+L +   
Sbjct: 65  AEALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE--- 121

Query: 165 DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN 224
                  D   PDL IYL +   + L+RL  RK   L+  E +K   F ++        +
Sbjct: 122 ---DALGD--MPDLTIYLDIDPEVALERL--RKRGELDREEFEKLDFFEKVRQRYLELAD 174

Query: 225 NPELVFVDNSEKSVHESSNDI 245
             + + V ++  SV E   DI
Sbjct: 175 KEKSIHVIDATNSVEEVEQDI 195

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 195

>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 44/215 (20%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-------LREKF-----DAHDSL 107
            I  EG+DG GKS    T  + LK  L+      + +       L EK      D ++ +
Sbjct: 5   FITIEGIDGAGKS----TQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEM 60

Query: 108 LRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLP 160
             +    L  + AA      + IK  L + + V+ DRF  S+ AY             L 
Sbjct: 61  DDKTELLL--FYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGG-------RGLD 111

Query: 161 DED-DDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-----LKKNAKFRE 214
            +    +  +     +PDL +YL V   + L R+  R      E E      +    + E
Sbjct: 112 IDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREGYLE 171

Query: 215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI 249
           L            +V +D + +S+ E   DI+ +I
Sbjct: 172 LA-----EKEPERIVVID-ASQSLEEVHEDILAVI 200

Length = 205

>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 24/176 (13%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASL----KSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           IV EG  G GKS  ++ +A+ L   +              L EKF        R  +   
Sbjct: 2   IVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFL-EKFYEDPK---RWAFPFQ 57

Query: 117 NYIAAQDIKQ-------DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED--DDIY 167
            Y     +KQ           Q V+++R   S      A   +K   +   + D  ++++
Sbjct: 58  LYFLLSRLKQYKDALEHLSTGQGVILERSIFS--DRVFAEANLKEGGIMKTEYDLYNELF 115

Query: 168 SW-PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
                +L+ PDLVIYL  S    L+R+ +R        E      + E L   Y  
Sbjct: 116 DNLIPELLPPDLVIYLDASPETCLKRIKKRGR----PEEQGIPLDYLEDLHEAYEK 167

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA. Length = 193

>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 37/163 (22%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKS-----------TPPSSIMSLREKFD-AHDSL 107
           LI  EG+DG GK   ++ +   L+A  +S           +  + +    E     H  L
Sbjct: 2   LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLA--AEALHGRHGDL 59

Query: 108 LRRAY-----YSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAYGMANELVKNSDLKL-P 160
               Y     ++L    A  ++   L    VV +DR+  S +AY  A         +L  
Sbjct: 60  ADSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAA---------RLHQ 110

Query: 161 DEDDDIYSWPKDLM-------KPDLVIYLTVSEAIRLQRLSRR 196
           D D +  +W  +L         PDL + L V   +  +R  RR
Sbjct: 111 DADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR 153

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.95
PRK07933	213	thymidylate kinase; Validated	99.93
PRK13973	213	thymidylate kinase; Provisional	99.93
PLN02924	220	thymidylate kinase	99.92
PRK13976	209	thymidylate kinase; Provisional	99.91
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.91
PRK13975	196	thymidylate kinase; Provisional	99.9
PRK00698	205	tmk thymidylate kinase; Validated	99.89
PRK13974	212	thymidylate kinase; Provisional	99.89
KOG3327|consensus	208		99.88
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.87
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.87
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.86
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.85
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.84
KOG3877|consensus	393		99.73
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.71
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.69
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.68
PRK14532	188	adenylate kinase; Provisional	99.66
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.66
PRK14531	183	adenylate kinase; Provisional	99.65
PLN02200	234	adenylate kinase family protein	99.64
PRK13808	333	adenylate kinase; Provisional	99.64
PRK14527	191	adenylate kinase; Provisional	99.63
PHA03132	580	thymidine kinase; Provisional	99.63
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.61
PRK02496	184	adk adenylate kinase; Provisional	99.6
KOG3079|consensus	195		99.6
PRK14528	186	adenylate kinase; Provisional	99.59
PRK14530	215	adenylate kinase; Provisional	99.58
PLN02674	244	adenylate kinase	99.58
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.58
PRK03839	180	putative kinase; Provisional	99.57
PRK00279	215	adk adenylate kinase; Reviewed	99.56
PRK13949	169	shikimate kinase; Provisional	99.56
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.53
PRK04182	180	cytidylate kinase; Provisional	99.53
PRK14529	223	adenylate kinase; Provisional	99.52
PLN02459	261	probable adenylate kinase	99.52
PRK08233	182	hypothetical protein; Provisional	99.51
PRK05057	172	aroK shikimate kinase I; Reviewed	99.51
PRK03731	171	aroL shikimate kinase II; Reviewed	99.5
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.49
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.49
PRK06762	166	hypothetical protein; Provisional	99.49
PRK00131	175	aroK shikimate kinase; Reviewed	99.49
PRK14526	211	adenylate kinase; Provisional	99.48
PRK00625	173	shikimate kinase; Provisional	99.48
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.47
PRK13948	182	shikimate kinase; Provisional	99.47
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.46
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.46
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.46
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.45
PRK04040	188	adenylate kinase; Provisional	99.44
PLN02842	505	nucleotide kinase	99.44
KOG4235|consensus	244		99.44
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.44
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.43
PRK13946	184	shikimate kinase; Provisional	99.43
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.42
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.42
PRK13947	171	shikimate kinase; Provisional	99.42
PRK05541	176	adenylylsulfate kinase; Provisional	99.42
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.41
PRK01184	184	hypothetical protein; Provisional	99.41
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.4
PTZ00451	244	dephospho-CoA kinase; Provisional	99.38
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.38
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.37
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.37
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.37
PRK06217	183	hypothetical protein; Validated	99.36
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.36
PLN02199	303	shikimate kinase	99.35
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.35
PLN02422	232	dephospho-CoA kinase	99.34
PTZ00088	229	adenylate kinase 1; Provisional	99.34
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.33
PRK05480	209	uridine/cytidine kinase; Provisional	99.33
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.31
PRK08356	195	hypothetical protein; Provisional	99.3
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.3
PRK14738	206	gmk guanylate kinase; Provisional	99.29
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.26
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.26
PRK09825	176	idnK D-gluconate kinase; Provisional	99.26
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.25
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.25
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.24
KOG3220|consensus	225		99.24
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.23
KOG3347|consensus	176		99.22
PRK11545	163	gntK gluconate kinase 1; Provisional	99.21
KOG3354|consensus	191		99.2
PRK08118	167	topology modulation protein; Reviewed	99.2
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.18
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.18
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	99.18
COG3709	192	Uncharacterized component of phosphonate metabolis	99.18
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.17
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.17
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.17
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.17
PHA02530	300	pseT polynucleotide kinase; Provisional	99.16
PRK03846	198	adenylylsulfate kinase; Provisional	99.14
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.14
PRK07667	193	uridine kinase; Provisional	99.14
PRK14737	186	gmk guanylate kinase; Provisional	99.13
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.12
PRK00023	225	cmk cytidylate kinase; Provisional	99.11
PTZ00301	210	uridine kinase; Provisional	99.11
PHA03136	378	thymidine kinase; Provisional	99.11
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.1
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.1
PRK00889	175	adenylylsulfate kinase; Provisional	99.09
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.09
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.08
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.08
PRK06696	223	uridine kinase; Validated	99.08
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.07
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.02
PRK00300	205	gmk guanylate kinase; Provisional	99.02
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.0
PRK06547	172	hypothetical protein; Provisional	98.98
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.97
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.93
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.92
PRK07261	171	topology modulation protein; Provisional	98.92
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.91
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.91
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.88
PRK05439	311	pantothenate kinase; Provisional	98.87
COG0645	170	Predicted kinase [General function prediction only	98.86
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.83
PRK12338	319	hypothetical protein; Provisional	98.83
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.8
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.79
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.79
PLN02348	395	phosphoribulokinase	98.78
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.75
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.74
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.72
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.71
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.68
PLN02318	656	phosphoribulokinase/uridine kinase	98.67
PRK07429	327	phosphoribulokinase; Provisional	98.65
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.64
PHA03135	343	thymidine kinase; Provisional	98.64
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.61
PHA03134	340	thymidine kinase; Provisional	98.6
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.59
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.56
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.56
PLN02772	398	guanylate kinase	98.55
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.55
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.55
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.55
KOG3062|consensus	281		98.53
PHA03138	340	thymidine kinase; Provisional	98.52
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.48
PRK15453	290	phosphoribulokinase; Provisional	98.47
COG4639	168	Predicted kinase [General function prediction only	98.47
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.46
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.46
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.45
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.45
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.44
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	98.36
COG2326	270	Uncharacterized conserved protein [Function unknow	98.31
PHA03133	368	thymidine kinase; Provisional	98.31
KOG3078|consensus	235		98.31
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.28
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.26
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.21
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.17
PHA00729	226	NTP-binding motif containing protein	98.15
PRK06761	282	hypothetical protein; Provisional	98.14
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.12
KOG0635|consensus	207		98.12
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.1
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	98.08
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.07
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.07
COG1660	286	Predicted P-loop-containing kinase [General functi	98.06
PLN02165	334	adenylate isopentenyltransferase	98.06
KOG0744|consensus	423		98.06
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.05
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.99
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.99
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.98
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.93
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.88
COG3911	183	Predicted ATPase [General function prediction only	97.87
KOG0733|consensus	802		97.84
COG4987	573	CydC ABC-type transport system involved in cytochr	97.81
KOG1384|consensus	348		97.78
PF00004	132	AAA: ATPase family associated with various cellula	97.77
KOG3308|consensus	225		97.74
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.73
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.71
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.67
KOG4238|consensus	627		97.66
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.66
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.65
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.63
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.62
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.62
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.62
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.61
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.61
KOG0058|consensus	716		97.61
PRK09169	2316	hypothetical protein; Validated	97.6
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.6
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.6
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.59
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.58
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.57
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.56
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.56
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.56
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.55
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.55
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.55
KOG0707|consensus	231		97.55
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.55
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.55
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.54
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.54
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.54
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.54
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.53
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.53
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.52
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.52
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.52
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.51
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.51
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.51
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.5
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.5
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.5
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.5
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.5
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.5
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.49
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.49
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.49
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.49
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.48
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.48
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.48
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.48
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.48
smart00382	148	AAA ATPases associated with a variety of cellular	97.48
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.47
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.47
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.47
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.47
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.46
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.46
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.46
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.46
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.46
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.46
PLN02840	421	tRNA dimethylallyltransferase	97.46
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.46
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.46
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.46
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.45
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.45
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.45
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.45
COG4559	259	ABC-type hemin transport system, ATPase component	97.44
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	97.44
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.44
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.44
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.44
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.44
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.43
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.43
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.43
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.43
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.42
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.42
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.42
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.42
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.42
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.42
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.41
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.41
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.41
PRK10908	222	cell division protein FtsE; Provisional	97.4
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.4
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.4
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.4
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.4
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.4
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.39
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.39
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.39
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.39
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.39
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.39
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.39
cd03246	173	ABCC_Protease_Secretion This family represents the	97.39
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.39
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.38
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.38
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.38
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.38
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.38
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.38
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.38
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.38
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	97.37
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.37
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.37
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.37
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.37
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.36
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.36
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.36
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.36
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.36
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.36
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.36
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.36
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.36
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.36
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.36
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.36
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.35
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.35
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.35
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.35
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.35
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.35
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.35
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.35
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.34
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.34
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.34
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.34
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.34
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.34
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.34
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.33
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.33
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.33
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.33
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.33
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.33
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.33
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.32
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.32
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.32
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	97.32
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.32
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.32
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.31
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.31
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.31
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.31
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.31
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.31
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.31
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.31
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.3
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.3
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.3
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.3
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.3
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.3
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.3
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.29
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.29
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.29
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.29
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.29
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.29
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.29
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.29
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.28
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.28
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.28
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.28
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.28
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.27
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.27
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.27
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.27
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.27
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.27
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.27
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.27
KOG2004|consensus	906		97.27
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.27
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.27
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.26
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.26
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.25
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.25
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.25
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.25
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.25
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.24
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.24
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.24
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.24
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.24
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.23
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.23
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.23
PRK03695	248	vitamin B12-transporter ATPase; Provisional	97.23
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.23
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.23
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.23
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.23
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.22
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.22
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.22
PLN02796	347	D-glycerate 3-kinase	97.22
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.22
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.21
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.21
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.21
COG4181	228	Predicted ABC-type transport system involved in ly	97.21
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.21
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.21
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.21
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.2
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.2
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.2
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.2
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.2
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.2
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.2
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	97.2
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.2
KOG0055|consensus	1228		97.19
KOG0730|consensus	693		97.19
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.19
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.19
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.19
PF13245	76	AAA_19: Part of AAA domain	97.19
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.19
PLN02748	468	tRNA dimethylallyltransferase	97.19
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.18
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.18
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.18
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	97.17
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.17
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.17
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.17
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.17
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.17
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.17
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.16
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.16
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.16
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.16
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.16
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.16
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.16
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	97.15
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.15
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.15
KOG0055|consensus	1228		97.15
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.15
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.14
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.14
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.14
PF07726	131	AAA_3: ATPase family associated with various cellu	97.13
KOG0056|consensus	790		97.13
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.13
PRK10938	490	putative molybdenum transport ATP-binding protein	97.12
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.12
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.11
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.11
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.11
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.11
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.11
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.11
PF13173	128	AAA_14: AAA domain	97.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.1
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.09
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.09

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=5.8e-27  Score=191.83  Aligned_cols=184  Identities=24%  Similarity=0.400  Sum_probs=141.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhccc-c---chHHHHHHHHHH-HHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDAH-D---SLLRRAYYSLGN-YIAAQDIKQD  127 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~~-~---~~~~~~~~~~~~-~~~~~~i~~~  127 (259)
                      +|+|+|.+||||||+++.|++++...     +.++|+++  +..+|+...+. .   ......+|++++ +++.+.+.++
T Consensus         5 fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pa   84 (208)
T COG0125           5 FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPA   84 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            49999999999999999999999876     35678865  46778776653 1   233445566665 5688889998


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE  205 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~  205 (259)
                      + .|.+||+|||+.|+++|+..   +.+++   .+....+..+....++||+++||++||++.++|+.+|+.. ++.+..
T Consensus        85 l~~g~vVI~DRy~~Ss~AYQg~---~~~~~---~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~  158 (208)
T COG0125          85 LKEGKVVICDRYVDSSLAYQGG---GRGLD---LDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE  158 (208)
T ss_pred             hcCCCEEEECCcccHHHHhhhh---ccCCC---HHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence            8 58999999999999999952   22221   1223333345555678999999999999999999999865 444432


Q ss_pred             HHHHHHHHHHHHHHHHhcCC--C-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        206 LKKNAKFRELLTTIYRNMNN--P-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~--~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                         ..++++++++.|.++..  + .+++||++.+ ++++.++|.+.|....
T Consensus       159 ---~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~-~e~v~~~i~~~l~~~l  205 (208)
T COG0125         159 ---DDEFLEKVREGYLELAAKFPERIIVIDASRP-LEEVHEEILKILKERL  205 (208)
T ss_pred             ---HHHHHHHHHHHHHHHHhhCCCeEEEEECCCC-HHHHHHHHHHHHHHhh
Confidence               33689999999999953  3 3899999999 9999999999998754

>PRK07933 thymidylate kinase; Validated

Probab=99.93  E-value=1.2e-24  Score=180.32  Aligned_cols=186  Identities=19%  Similarity=0.262  Sum_probs=129.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCC--CCc--hHHHHHHhcccc------chHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTP--PSS--IMSLREKFDAHD------SLLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p--~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  123 (259)
                      ++|+|+|++||||||+++.|+++|....     +.+|  +.+  ++.+++.+....      ......+|+++++...+.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~   80 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE   80 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence            4699999999999999999999998652     3566  322  466777765321      122345667776554566


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc---ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP---KDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      +.+++ +|..||+|||++|+++|+.++. +.+.  . .....++..+.   ...+.||++|||++||++..+|+.+|++.
T Consensus        81 I~p~l~~g~~VI~DRy~~S~~Ayq~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~  156 (213)
T PRK07933         81 LAGLLAAHDVVILDRYVASNAAYSAARL-HQDA--D-GEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ  156 (213)
T ss_pred             HHHHHhCCCEEEECCccchhHHHhccCC-Cccc--c-hHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence            88877 5889999999999999986531 1110  0 01122222221   23457999999999999999999999742


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHHhcCC---C-CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        200 T--LEENELKKNAKFRELLTTIYRNMNN---P-ELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       200 ~--~~~~~~e~~~~~~~~~~~~y~~~~~---~-~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      .  ...+..+...+|++++++.|.++..   + .+++||++.+ ++++.++|.+.|
T Consensus       157 ~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~-~e~v~~~i~~~~  211 (213)
T PRK07933        157 DADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVD-PAALAARLAAAL  211 (213)
T ss_pred             cCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCC-HHHHHHHHHHHh
Confidence            1  0112233346799999999998842   2 5899999877 999999998865

>PRK13973 thymidylate kinase; Provisional

Probab=99.93  E-value=3.5e-24  Score=177.69  Aligned_cols=187  Identities=21%  Similarity=0.350  Sum_probs=131.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc---c--ccCCCCc--hHHHHHHhccc--cc---hHHHHHHHHHHH-HHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS---L--KSTPPSS--IMSLREKFDAH--DS---LLRRAYYSLGNY-IAAQDIKQ  126 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~---~--~~~p~~~--~~~~~~~~~~~--~~---~~~~~~~~~~~~-~~~~~i~~  126 (259)
                      +|+|+|++||||||+++.|+++|...   +  ..+|+..  ++.+|+.+..+  ..   .....+|+++++ +..+.+.+
T Consensus         5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~   84 (213)
T PRK13973          5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIRP   84 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999543   3  3466643  46677765532  11   223355666664 44566888


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE  205 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~  205 (259)
                      ++ +|.+||+|||++|+++|+.+.   ++.+   .+....+..+....+.||++|||+||++++.+|+.+|+..+.. +.
T Consensus        85 ~l~~g~~Vi~DRy~~S~~ayq~~~---~~~~---~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~-~~  157 (213)
T PRK13973         85 ALARGKIVLCDRFIDSTRAYQGVT---GNVD---PALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTP-DR  157 (213)
T ss_pred             HHHCCCEEEEcchhhhHHHHcccc---cCCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCcc-Cc
Confidence            77 588999999999999998642   2221   1122333334445578999999999999999999999743200 11


Q ss_pred             HH-HHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        206 LK-KNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       206 ~e-~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .+ ...++++++.+.|.++.  .+ .+.+||++++ ++++.++|.+.+.....
T Consensus       158 ~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~-~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        158 FEKEDLAFHEKRREAFLQIAAQEPERCVVIDATAS-PEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             hhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCC-HHHHHHHHHHHHHHHHh
Confidence            11 14567788888888874  22 4789999998 99999999999987543

>PLN02924 thymidylate kinase

Probab=99.92  E-value=1.1e-23  Score=174.96  Aligned_cols=177  Identities=20%  Similarity=0.259  Sum_probs=131.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC-c--hHHHHHHhccccc---hHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS-S--IMSLREKFDAHDS---LLRRAYYSLGNYIAAQDIKQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~-~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~  126 (259)
                      .++|+|+|++|||||||++.|++++...+     +++|+. +  +..+++.+.....   .....+|+++++.....+.+
T Consensus        16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~p   95 (220)
T PLN02924         16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMER   95 (220)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34599999999999999999999998653     345652 2  3456665543221   22335577777665667888


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE  205 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~  205 (259)
                      ++ .|.+||+|||++|+++|+.++    +.      ..+++..+....+.||++|||++||+++.+|...+++  +.   
T Consensus        96 al~~g~vVI~DRy~~S~~ayq~~~----g~------~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~--~~---  160 (220)
T PLN02924         96 KLKSGTTLVVDRYSYSGVAFSAAK----GL------DLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGE--RY---  160 (220)
T ss_pred             HHHCCCEEEEccchhHHHHHHHhc----CC------CHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc--cc---
Confidence            87 589999999999999998643    22      1233444444567899999999999999999754322  11   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                       + ..++++++++.|.++....+.+||++.+ ++++.++|.+.+...
T Consensus       161 -E-~~~~~~rv~~~Y~~la~~~~~vIDa~~s-ieeV~~~I~~~I~~~  204 (220)
T PLN02924        161 -E-KLEFQKKVAKRFQTLRDSSWKIIDASQS-IEEVEKKIREVVLDT  204 (220)
T ss_pred             -c-cHHHHHHHHHHHHHHhhcCEEEECCCCC-HHHHHHHHHHHHHHH
Confidence             1 4678999999999997667889999987 999999999988763

>PRK13976 thymidylate kinase; Provisional

Probab=99.91  E-value=3.7e-23  Score=170.56  Aligned_cols=182  Identities=23%  Similarity=0.274  Sum_probs=129.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-------cccCCCCc--hHHHHHHhcccc---chHHHHHHHHHHH-HHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPPSS--IMSLREKFDAHD---SLLRRAYYSLGNY-IAAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-------~~~~p~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~i~  125 (259)
                      ++|+|+|.+||||||+++.|+++|...       ...+|+++  +..+++.+....   ......+|+++++ +..+.+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999998653       12467654  366777665321   1223345666664 4566788


Q ss_pred             HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                      +++ +|.+||+|||++|+++|+..   +.+.+   .+....+..+.. .+.||++|||++||++.++|+.+|+-    + 
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~---~~g~~---~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~----e-  148 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGY---GCGVD---LSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGY----E-  148 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccc---cCCCC---HHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccch----h-
Confidence            887 69999999999999999853   12221   122344444443 46799999999999999999965431    1 


Q ss_pred             HHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCC--CC---HhhHHHHHHHHHhcccc
Q psy16563        205 ELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSE--KS---VHESSNDIVELIHNLPM  254 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~--~~---~eev~~~I~~~l~~~~~  254 (259)
                        +...+|++++++.|.++.  .+ .+.+||++.  .+   ++++.++|.+.+.....
T Consensus       149 --~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~  204 (209)
T PRK13976        149 --FMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTK  204 (209)
T ss_pred             --cccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHH
Confidence              114678899999999985  33 378889842  23   89999999999876543

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.91  E-value=2.7e-23  Score=168.88  Aligned_cols=170  Identities=27%  Similarity=0.416  Sum_probs=122.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHhhcccc----cCCCC-c--hHHHHHHhccccc---hHHHHHHHHHH-HHHHHHHHHHh-CC
Q psy16563         63 FEGLDGCGKSHTSQTVAKKLKASLK----STPPS-S--IMSLREKFDAHDS---LLRRAYYSLGN-YIAAQDIKQDL-QK  130 (259)
Q Consensus        63 ~~g~~g~gkst~~~~l~~~~~~~~~----~~p~~-~--~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~i~~~l-~~  130 (259)
                      |+|++||||||+++.|++++....+    ..|+. +  +..+++.+.....   .....+|.+.+ +.....+.+++ +|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7999999999999999999987753    33332 2  3566776663222   23345566666 67777788877 68


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCC--CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM--KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      .+||+|||++|+++|+.+.   ++.      ...++..+.....  .||++|||++||+++++|+.+|+......   ..
T Consensus        81 ~~VI~DRy~~S~lay~~~~---~~~------~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~---~~  148 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAK---GEL------DIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEE---EE  148 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTT---TSS------THHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTT---TH
T ss_pred             CEEEEechhHHHHHhCccc---cCC------cchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHH---HH
Confidence            9999999999999998652   111      1233333333323  89999999999999999999998721111   12


Q ss_pred             HHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHH
Q psy16563        209 NAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I  245 (259)
                      ..+++++.++.|.++.  ..++++||++.+ ++++.++|
T Consensus       149 ~~~~~~~~~~~y~~l~~~~~~~~iid~~~~-~e~v~~~I  186 (186)
T PF02223_consen  149 DLEYLRRVREAYLELAKDPNNWVIIDASRS-IEEVHEQI  186 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTEEEEETTS--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCCC-HHHHHhhC
Confidence            5678888888998886  456999999998 99999876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK13975 thymidylate kinase; Provisional

Probab=99.90  E-value=4.6e-22  Score=162.82  Aligned_cols=180  Identities=29%  Similarity=0.414  Sum_probs=125.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc--hHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS--IMSLREKFDAH--DSLLRRAYYSLGNYIAAQDIKQDLQKQPVV  134 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi  134 (259)
                      ++|+|+|++||||||+++.|+++++......|...  +..+++.+...  .......+|+.+++...+.+++.+....||
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~~~vi   82 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKKRDVV   82 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence            35999999999999999999999997655555543  35566666543  112233456666665556677766667899


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      +|||+.++.+|+.+    ++.    +.  ..+..+....+.||++|||++|++++.+|+..|+... .+     ..++.+
T Consensus        83 ~DRy~~S~~a~~~~----~g~----~~--~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~-~~-----~~~~~~  146 (196)
T PRK13975         83 CDRYVYSSIAYQSV----QGI----DE--DFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEI-FE-----KKEFLK  146 (196)
T ss_pred             EECchhHHHHHhcc----cCC----CH--HHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccc-cc-----hHHHHH
Confidence            99999999999753    222    11  1122222223579999999999999999999986311 11     234556


Q ss_pred             HHHHHHHhcC-------CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        215 LLTTIYRNMN-------NPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       215 ~~~~~y~~~~-------~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      ++.+.|.++.       ..++++||+++.++++++++|.+.|....+
T Consensus       147 ~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~  193 (196)
T PRK13975        147 KVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIP  193 (196)
T ss_pred             HHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            6666676652       124799999866699999999999976543

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.89  E-value=7.9e-22  Score=162.34  Aligned_cols=184  Identities=24%  Similarity=0.330  Sum_probs=124.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhcc---cc-chHHHHHHHHHHH-HHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDA---HD-SLLRRAYYSLGNY-IAAQDIKQ  126 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~-~~~~~i~~  126 (259)
                      ++|+|+|++||||||+++.|++.++..     +..+|...  ++.+++.+..   +. .......+.+.++ .....+.+
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~   83 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKP   83 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999988543     22344432  3556665542   11 1112223334433 33445666


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE  205 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~  205 (259)
                      .+ .|.+||+|||++++++|+.+..   +.+   .+....+..+....+.||++|||++|++++++|+.+|+..+..+. 
T Consensus        84 ~l~~g~~vi~DR~~~s~~~~~~~~~---~~~---~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~-  156 (205)
T PRK00698         84 ALARGKWVISDRFIDSSLAYQGGGR---GLD---IDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQ-  156 (205)
T ss_pred             HHHCCCEEEECCchhHHHHHCCCCC---CCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh-
Confidence            55 5889999999999999875321   111   122334444444457799999999999999999999985332221 


Q ss_pred             HHHHHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                        ...++++++...|..+.   ...+++||++++ ++++.++|.+.+.+.
T Consensus       157 --~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~-~e~v~~~i~~~i~~~  203 (205)
T PRK00698        157 --EGLDFFERVREGYLELAEKEPERIVVIDASQS-LEEVHEDILAVIKAW  203 (205)
T ss_pred             --hhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence              14567788888888774   235889999987 999999999998764

>PRK13974 thymidylate kinase; Provisional

Probab=99.89  E-value=6.4e-22  Score=164.05  Aligned_cols=182  Identities=26%  Similarity=0.315  Sum_probs=128.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc----------ccCCCCc--hHHHHHHhccc-----c-chHHHHHHHHHHHH-H
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSS--IMSLREKFDAH-----D-SLLRRAYYSLGNYI-A  120 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~----------~~~p~~~--~~~~~~~~~~~-----~-~~~~~~~~~~~~~~-~  120 (259)
                      +|+|+|++||||||+++.|++++....          ..+|+++  +..+++.+...     + ......+|+++++. +
T Consensus         5 ~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~   84 (212)
T PRK13974          5 FIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHV   84 (212)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence            499999999999999999999987432          2355543  35677766422     1 12334566777644 4


Q ss_pred             HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      ...+.+.+ .|.+||+|||++|+++|+..   +++.+   .+....+..+......||++|||+||++++++|+..|++.
T Consensus        85 ~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~---~r~~~---~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD  158 (212)
T PRK13974         85 SKIIRPALENGDWVISDRFSGSTLAYQGY---GRGLD---LELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPD  158 (212)
T ss_pred             HHHHHHHHHCCCEEEEcCchhhHHHHccc---cCCCC---HHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccC
Confidence            45678876 58899999999999999742   12221   1112333333334457999999999999999999988642


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      . .+.   ....|.++....|..+.+ ..+.+||++++ ++++.++|.+.|.+.
T Consensus       159 ~-~e~---~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~-~eeV~~~I~~~l~~~  207 (212)
T PRK13974        159 R-IEA---EGIEFLERVAEGFALIAEERNWKVISADQS-IETISNEIKETLLNN  207 (212)
T ss_pred             c-hhh---hhHHHHHHHHHHHHHHHhcCCEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence            2 221   145678888888887753 35889999987 999999999999764

>KOG3327|consensus

Probab=99.88  E-value=1.4e-21  Score=153.15  Aligned_cols=179  Identities=25%  Similarity=0.278  Sum_probs=133.3

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC-------chHHHHHHhccccchHHHHHHHHHHHHHH
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS-------SIMSLREKFDAHDSLLRRAYYSLGNYIAA  121 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (259)
                      .+|..  |+++|.++|||||++..|.+.+....     .+.|.-       ..+++++.+ +.+.....++|++++|...
T Consensus         3 ~rg~l--iV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~-dl~d~~iHLlFSAnRwe~~   79 (208)
T KOG3327|consen    3 IRGAL--IVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKS-DLPDHTIHLLFSANRWEHV   79 (208)
T ss_pred             CCccE--EeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhcc-CCcHHHHHHHhccchhhHH
Confidence            34455  99999999999999999999886543     233331       125566655 3333445678999999998


Q ss_pred             HHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc
Q psy16563        122 QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT  200 (259)
Q Consensus       122 ~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~  200 (259)
                      ..|+..+ +|..+|+|||++|+.+|..|++    +      ..++.++|..++++||+++||++||++ .+|...+|.+ 
T Consensus        80 ~~i~e~l~kg~~~ivDRY~~SGvAyS~AKg----l------~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~E-  147 (208)
T KOG3327|consen   80 SLIKEKLAKGTTLIVDRYSFSGVAYSAAKG----L------DLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGEE-  147 (208)
T ss_pred             HHHHHHHhcCCeEEEecceecchhhhhhcC----C------CcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcchh-
Confidence            8887755 6888999999999999998753    2      246777888899999999999999999 5555555532 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        201 LEENELKKNAKFRELLTTIYRNM---NNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       201 ~~~~~~e~~~~~~~~~~~~y~~~---~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +.+     ..+++++....|.++   .++.+.++|++.+ +|++.+.|..+++...
T Consensus       148 rye-----~v~fqekv~~~~q~l~r~e~~~~~~vDAs~s-ve~V~~~V~~i~e~~~  197 (208)
T KOG3327|consen  148 RYE-----TVAFQEKVLVFFQKLLRKEDLNWHVVDASKS-VEKVHQQVRSLVENVL  197 (208)
T ss_pred             HHH-----HHHHHHHHHHHHHHHHhccCCCeEEEecCcc-HHHHHHHHHHHHHHhc
Confidence            221     344666666666666   3567999999977 9999999988887654

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.87  E-value=1.1e-20  Score=154.34  Aligned_cols=182  Identities=24%  Similarity=0.340  Sum_probs=124.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc---c--ccCCCCc--hHHHHHHhcccc-----chHHHHHHHHHHHH-HHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS---L--KSTPPSS--IMSLREKFDAHD-----SLLRRAYYSLGNYI-AAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~---~--~~~p~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~i~  125 (259)
                      ++|+|+|++||||||+++.|++++...   +  +.+|...  +..+++.+....     ......++.+.++. ..+.+.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999533   2  2334332  345565554321     11222334444433 334455


Q ss_pred             HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                      +.+ .+..||+|||+.++.+|+.+..   +.   .+.....+..+....+.||++|||++|++++++|+.+|++....  
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--  152 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGR---GL---GEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD--  152 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCcccc---CC---CHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh--
Confidence            555 6899999999999998864321   10   01223444444455568999999999999999999999864321  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        205 ELKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                       .+...++++++...|.++..   .++++||++.+ ++++.++|.+.|.
T Consensus       153 -~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~-~e~i~~~i~~~i~  199 (200)
T cd01672         153 -EQEGLEFHERVREGYLELAAQEPERIIVIDASQP-LEEVLAEILKAIL  199 (200)
T ss_pred             -hhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCC-HHHHHHHHHHHHh
Confidence             11245678888888887742   35899999987 9999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.87  E-value=3e-21  Score=160.76  Aligned_cols=182  Identities=20%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCC----------CCc-hHH------HHHHhccccc----h---HHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----------PSS-IMS------LREKFDAHDS----L---LRRAYYSL  115 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p----------~~~-~~~------~~~~~~~~~~----~---~~~~~~~~  115 (259)
                      +|+|+|++||||||+++.|+++++..++.+|          .+. ...      +.+.|+.++.    +   .+..++ .
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~-~   79 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY-S   79 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-H
Confidence            4999999999999999999999987555444          111 111      1333433221    1   122233 3


Q ss_pred             HH-HHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHH
Q psy16563        116 GN-YIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQR  192 (259)
Q Consensus       116 ~~-~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~R  192 (259)
                      .+ ....+.+.+.+ .|..||+|||++|+.+|+.+....+.......+.+..++.+ ....+.||++|||++|++++.+|
T Consensus        80 ~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~R  159 (219)
T cd02030          80 SRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKR  159 (219)
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHH
Confidence            33 33445556655 58899999999999999743211111100001112333332 33457899999999999999999


Q ss_pred             HhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-----C-CCeEEEeCC--CCCHhhHHHHHHH
Q psy16563        193 LSRRKNFTLEENELKKNAKFRELLTTIYRNMN-----N-PELVFVDNS--EKSVHESSNDIVE  247 (259)
Q Consensus       193 l~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-----~-~~~~vID~s--~~~~eev~~~I~~  247 (259)
                      +.+|++....    ....+|++++++.|.++.     . .++++||++  .+ +++++++|..
T Consensus       160 i~~R~~~~e~----~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~-~e~i~~~I~~  217 (219)
T cd02030         160 IKKRGDPHEM----KVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGD-TEKVVEDIEY  217 (219)
T ss_pred             HHHcCCchhh----cccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhh-HHHHHHHHHc
Confidence            9999854221    225678889999998772     2 368999987  44 7777777643

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.86  E-value=4.6e-20  Score=150.81  Aligned_cols=176  Identities=26%  Similarity=0.392  Sum_probs=115.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhc-ccc-ch---HHHHHHHHHH-HHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFD-AHD-SL---LRRAYYSLGN-YIAAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~-~~~-~~---~~~~~~~~~~-~~~~~~i~  125 (259)
                      ++|+|+|++||||||+++.|++.++..     ....|...  ++.+++.+. ..+ .+   ....+|.+.+ +...+.+.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~   83 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK   83 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999763     23344332  244555422 111 11   1233445444 34445566


Q ss_pred             HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                      +.+ .+..||+|||++++.+|....   ++.+   .+....+....... +||++|||++|++++++|+..|+..+....
T Consensus        84 ~~l~~~~~VI~DR~~~s~~ay~~~~---~~~~---~~~~~~l~~~~~~~-~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~  156 (195)
T TIGR00041        84 PALAEGKLVISDRYVFSSIAYQGGA---RGID---EDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRGELDREEF  156 (195)
T ss_pred             HHHhCCCEEEECCcccHHHHHcccc---CCCC---HHHHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHhcCCcchHHH
Confidence            666 578999999999998886321   1110   11112222222111 499999999999999999999976432221


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCHhhHHHHH
Q psy16563        205 ELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~eev~~~I  245 (259)
                         ...++++++.+.|.++..  .++++||++.+ ++++.++|
T Consensus       157 ---~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~-~e~v~~~i  195 (195)
T TIGR00041       157 ---EKLDFFEKVRQRYLELADKEKSIHVIDATNS-VEEVEQDI  195 (195)
T ss_pred             ---HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCC-HHHHHhhC
Confidence               146688888889998853  45899999987 99998764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.85  E-value=1.2e-20  Score=154.09  Aligned_cols=176  Identities=23%  Similarity=0.292  Sum_probs=109.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC---chHHHHHHhccccc---hHHHHHHHHHHH-HHHHHHHHHhCCCc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS---SIMSLREKFDAHDS---LLRRAYYSLGNY-IAAQDIKQDLQKQP  132 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~i~~~l~~~~  132 (259)
                      +|+|+|++||||||+++.|+++++..++.+|..   ....+.+.+..++.   .....++...+. ...+.+.+...+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~   80 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQG   80 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            499999999999999999999988877888752   12222333333321   111222222222 22222333225899


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK  211 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~  211 (259)
                      ||+|||+.++.+|.......++....-.+.+..+..+. ...+.||++|||++|++++++|+.+|++..  +.  ....+
T Consensus        81 vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~--~~~~~  156 (193)
T cd01673          81 VILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPE--EQ--GIPLD  156 (193)
T ss_pred             eEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCcHh--hh--cCCHH
Confidence            99999999998886543322221000001122233322 235679999999999999999999997521  11  12456


Q ss_pred             HHHHHHHHHHhcCC------CCeEEEeCCCCCHh
Q psy16563        212 FRELLTTIYRNMNN------PELVFVDNSEKSVH  239 (259)
Q Consensus       212 ~~~~~~~~y~~~~~------~~~~vID~s~~~~e  239 (259)
                      +++++.+.|..+..      .++++||+++.++.
T Consensus       157 ~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~  190 (193)
T cd01673         157 YLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE  190 (193)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence            88888888888743      36899999884343

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.84  E-value=9.6e-20  Score=146.67  Aligned_cols=173  Identities=22%  Similarity=0.242  Sum_probs=113.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---HhCCCcEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ---DLQKQPVV  134 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~l~~~~vi  134 (259)
                      .++|+|.|+.|+||||+++.||++++..++.+..... .+.++|++++.   ++-|.++.+++.++.+.   ..+....+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vedn-p~L~~FY~d~~---~yaf~~QiyFL~~Rfk~~k~~~~~~~~i   79 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDN-PFLDLFYEDPE---RYAFLLQIYFLLNRFKKIKKALSDKNNI   79 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCC-hHHHHHHHhHH---HhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            3569999999999999999999999988776654433 56677777653   23345555666665543   33433378


Q ss_pred             EcCCccchh-hhhhhhhhccccCCCCCcchhhhhc----ccccCC-CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        135 MDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYS----WPKDLM-KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       135 ~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~~-~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      .||.+.+.. .+....-..+.+....-+.+..+++    .....+ .||+.|||+||.++..+||.+||+.-. ..+...
T Consensus        80 ~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E-~~~~~~  158 (216)
T COG1428          80 LDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFE-IDNFDE  158 (216)
T ss_pred             cCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcc-cccccc
Confidence            898888765 3322111111111111122444444    334455 899999999999999999999996421 122222


Q ss_pred             HHHHHHHHHHHHHhcC----CCCeEEEeCCC
Q psy16563        209 NAKFRELLTTIYRNMN----NPELVFVDNSE  235 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~----~~~~~vID~s~  235 (259)
                      +..|++.+...|..|.    .++++.||++.
T Consensus       159 ~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~  189 (216)
T COG1428         159 NKDYLKDLHRRYDDWFENYDACPVLGIDGDS  189 (216)
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeeeeccce
Confidence            4679999999999882    25667776654

>KOG3877|consensus

Probab=99.73  E-value=1.4e-16  Score=132.39  Aligned_cols=187  Identities=21%  Similarity=0.219  Sum_probs=122.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC----------------------CCCchHHHHHHhccccc--h---HHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST----------------------PPSSIMSLREKFDAHDS--L---LRRA  111 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----------------------p~~~~~~~~~~~~~~~~--~---~~~~  111 (259)
                      ++|+++|++|||||++|+.||+.||..++.+                      |+.|-..=.+.|..+|+  +   .+..
T Consensus        72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r  151 (393)
T KOG3877|consen   72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDR  151 (393)
T ss_pred             eEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHH
Confidence            5799999999999999999999999876542                      11121111245655553  1   2233


Q ss_pred             HHHHHHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHH
Q psy16563        112 YYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIR  189 (259)
Q Consensus       112 ~~~~~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~  189 (259)
                      +|........+.++..+ .|+.|+++|.++|.+.|..|+.-.+-+....-..++.+.+ -...++.|.++|||++|...+
T Consensus       152 ~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v  231 (393)
T KOG3877|consen  152 IYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKV  231 (393)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHH
Confidence            44444445556677766 5999999999999999876643222111111222344433 134568899999999999999


Q ss_pred             HHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEeCCCC-CHhhHHHHHHHH
Q psy16563        190 LQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN------NPELVFVDNSEK-SVHESSNDIVEL  248 (259)
Q Consensus       190 ~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~------~~~~~vID~s~~-~~eev~~~I~~~  248 (259)
                      .+||++||.......   ....|++.+++.|++..      ...++..|.+.. +-+.|+++|..+
T Consensus       232 ~~~Ik~rg~~~Eik~---~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl  294 (393)
T KOG3877|consen  232 LENIKRRGNTDEIKT---VSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERL  294 (393)
T ss_pred             HHHHHhcCCCcceee---hhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence            999999996432211   14568888888888752      345777888753 356777777553

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.71  E-value=1.2e-15  Score=123.61  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH--------------hccccchHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK--------------FDAHDSLLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  123 (259)
                      .++|+|.|++||||||+++.|++.+|..++..    ++.+++.              +...........    ...+...
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~   74 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLST----GDLLRAEVASGSERGKQLQAIMESGDLVPLDTV----LDLLKDA   74 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeH----HHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHH
Confidence            46799999999999999999999998766532    1122221              111100000000    0122233


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL  201 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~  201 (259)
                      +.+.+ .+..+|+|.|+....                     +...+......||++|||++|++++.+|+.+|+.. .+
T Consensus        75 ~~~~~~~~~~~i~dg~~~~~~---------------------q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r  133 (188)
T TIGR01360        75 MVAALGTSKGFLIDGYPREVK---------------------QGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGR  133 (188)
T ss_pred             HHcccCcCCeEEEeCCCCCHH---------------------HHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCC
Confidence            33333 477889997754311                     11111112245899999999999999999998742 22


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        202 EENE----LKKNAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       202 ~~~~----~e~~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .++.    .+....+.+.....+..+. ...+++||++.+ ++++.++|.+.++.
T Consensus       134 ~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l~~  187 (188)
T TIGR01360       134 VDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGT-VDDVFLQVCTAIDK  187 (188)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHHhc
Confidence            1111    1111222222221111111 224788999987 99999999998865

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.69  E-value=3.3e-15  Score=120.86  Aligned_cols=163  Identities=12%  Similarity=0.194  Sum_probs=93.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK  130 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~  130 (259)
                      +|+|.|++||||||+|+.|++.++..+++..    +.+++.+........  ..+..    .......+.+...+   .+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~----d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~   76 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG----DLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGS   76 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECC----hHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCC
Confidence            4899999999999999999999998776531    233333222111100  00000    00111122333332   25


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHH
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKN  209 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~  209 (259)
                      ..+|+|.|+.+....                  ..+..+......||++|||++|++++++|+..|+.. .+.++.    
T Consensus        77 ~~~vlDg~p~~~~q~------------------~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~----  134 (183)
T TIGR01359        77 KKFLIDGFPRNEENL------------------EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDN----  134 (183)
T ss_pred             CcEEEeCCCCCHHHH------------------HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCC----
Confidence            678999887643211                  111111122345899999999999999999999742 111111    


Q ss_pred             HHHHHHHHHHHHh--------cCCC-CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        210 AKFRELLTTIYRN--------MNNP-ELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       210 ~~~~~~~~~~y~~--------~~~~-~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      .+.+++....|.+        +... .+++||++++ ++++.++|.+.+
T Consensus       135 ~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~-~~~v~~~i~~~l  182 (183)
T TIGR01359       135 IESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGS-VEEVFEDVEKIF  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHh
Confidence            1122222223322        1222 4789999987 999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.68  E-value=4.5e-15  Score=114.52  Aligned_cols=162  Identities=20%  Similarity=0.280  Sum_probs=96.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHH----HHHHHHHHHHhCCCcE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGN----YIAAQDIKQDLQKQPV  133 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~i~~~l~~~~v  133 (259)
                      ++|+|.|++||||||+++.||+.+|.++++.    +..||++..+.+ .+..-.-++...    ....+..........+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsa----G~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSA----GTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeec----cHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCe
Confidence            4699999999999999999999999988753    233444333211 111100011110    0111122222224455


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH-HHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-NAKF  212 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~-~~~~  212 (259)
                      |++.-                           |..|... ..+|+.|||.+|.+++.+|+..|.+.+..+...+. .++.
T Consensus        77 Vlegr---------------------------LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~  128 (179)
T COG1102          77 VLEGR---------------------------LAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREE  128 (179)
T ss_pred             EEhhh---------------------------hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            55521                           1223221 45899999999999999999999865544332111 1122


Q ss_pred             HHHHHHHHHhcCC-----CC--eEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        213 RELLTTIYRNMNN-----PE--LVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       213 ~~~~~~~y~~~~~-----~~--~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .+  ...|.+++.     -.  .++||++.-+++++..-+...++....
T Consensus       129 se--~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         129 SE--KKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             HH--HHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence            22  234666542     11  589999998899999999998887643

>PRK14532 adenylate kinase; Provisional

Probab=99.66  E-value=7.1e-15  Score=119.50  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHHHHHHHHHHH----hC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNYIAAQDIKQD----LQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~i~~~----l~  129 (259)
                      .|+|.|++||||||+++.||+.++..+++.    .+.+++.+........  ..++..    ........+...    ..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~----~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   77 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLST----GDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA   77 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeC----cHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc
Confidence            389999999999999999999999887753    2233333221111100  000000    001112222222    23


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccC-CchHHHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENELK  207 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~~~~~~e  207 (259)
                      +..+|+|.|+.+...                  ...+..++ .....||++|||++|++++.+|+..|.. ..+.++.  
T Consensus        78 ~~g~vldg~pr~~~q------------------~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~--  137 (188)
T PRK14532         78 AGGAIFDGFPRTVAQ------------------AEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDN--  137 (188)
T ss_pred             cCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCC--
Confidence            667889988754321                  11111111 1234599999999999999999998852 1222211  


Q ss_pred             HHHHHHHHHHHHHHhc-------CCC-CeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        208 KNAKFRELLTTIYRNM-------NNP-ELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~-------~~~-~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                       ...+.+++...|.+.       ... .++.||++.+ +++++++|.+.|..
T Consensus       138 -~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~-~eev~~~I~~~l~~  187 (188)
T PRK14532        138 -PEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGS-IEAVAASIDAALEG  187 (188)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHhc
Confidence             112223333332221       122 3788999887 99999999998864

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.66  E-value=2.6e-15  Score=117.34  Aligned_cols=150  Identities=19%  Similarity=0.248  Sum_probs=91.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLL----RRAYYSLGNYIAAQDIKQDLQKQPVV  134 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~~~vi  134 (259)
                      |+|+|+|+||+||||+++.|+ .+|..++.        +.+...+++-+.    .+..+.++...+...+.+.+.....|
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~--------l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~I   71 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIE--------LNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGI   71 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceee--------HHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeE
Confidence            569999999999999999999 88877652        222222211000    00011112223344445544445556


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHH-HHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE-NELKKNAKFR  213 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~-~~~e~~~~~~  213 (259)
                      .|..+..                              .++.+|++|.|.|+|+++.+|+++||-..... .+.+  .+.+
T Consensus        72 vd~H~~h------------------------------l~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENve--AEi~  119 (180)
T COG1936          72 VDSHLSH------------------------------LLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVE--AEIL  119 (180)
T ss_pred             eechhhh------------------------------cCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHH--HHHH
Confidence            6622110                              01237999999999999999999999432221 1111  1122


Q ss_pred             H-HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        214 E-LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       214 ~-~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      . -+.++.+.+  ++++.||+++.++++++++|.+++..
T Consensus       120 ~vi~~EA~E~~--~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         120 DVILIEAVERF--EAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             HHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHHHHcc
Confidence            1 223333333  56899999999999999999999984

>PRK14531 adenylate kinase; Provisional

Probab=99.65  E-value=1.4e-14  Score=117.39  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=92.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK  130 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~  130 (259)
                      .|+|.|+|||||||+++.|++++|..+++.    ++.+++.+.....+..  ..+..    ..-......+...+   .+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~----gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~   79 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST----GDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNS   79 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEec----ccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccC
Confidence            499999999999999999999999887753    1223322211111100  00000    00001111122111   34


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH-
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK-  208 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~-  208 (259)
                      ..+|+|.|+.+...-                  ..+..++. ....|+.+|+|+||++++.+|+..|+..+..+..... 
T Consensus        80 ~g~ilDGfpr~~~q~------------------~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~R  141 (183)
T PRK14531         80 GGWLLDGFPRTVAQA------------------EALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNR  141 (183)
T ss_pred             CcEEEeCCCCCHHHH------------------HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHH
Confidence            567889887653211                  11111111 1234788999999999999999999754322211111 


Q ss_pred             HHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        209 NAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       209 ~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ...|.+.   +.+.|..  ...++.||++++ +++++++|.+.|
T Consensus       142 l~~y~~~~~pv~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~l  182 (183)
T PRK14531        142 LEVYREKTAPLIDHYRQ--RGLLQSVEAQGS-IEAITERIEKVL  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHh
Confidence            1112222   2222321  224799999998 999999998876

>PLN02200 adenylate kinase family protein

Probab=99.64  E-value=3.5e-14  Score=119.21  Aligned_cols=168  Identities=11%  Similarity=0.127  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHHH----HHHHHHHHHHHHh--
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYSL----GNYIAAQDIKQDL--  128 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~l--  128 (259)
                      .+.+|+|.|+|||||||+|+.|++.+|..+++.    ++.+++.+..........  ....    ........+...+  
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~----gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~  117 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA----GDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMES  117 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc----cHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Confidence            345799999999999999999999999877643    233444332222110000  0000    0011111222222  


Q ss_pred             -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                       .+..+|+|.|+......                  ..+....  ...||++|+|++|++++.+|+.+|+.. +.++   
T Consensus       118 ~~~~~~ILDG~Prt~~q~------------------~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl~~R~~~-r~dd---  173 (234)
T PLN02200        118 SDNNKFLIDGFPRTEENR------------------IAFERII--GAEPNVVLFFDCPEEEMVKRVLNRNQG-RVDD---  173 (234)
T ss_pred             CCCCeEEecCCcccHHHH------------------HHHHHHh--ccCCCEEEEEECCHHHHHHHHHcCcCC-CCCC---
Confidence             24568899876532111                  1111111  135899999999999999999998631 1111   


Q ss_pred             HHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        208 KNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                       ..+..++..+.|.+.        .. ..++.||++++ ++++++.|.+.+.....
T Consensus       174 -~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~-~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        174 -NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGT-VDEIFEQVRPIFAACEA  227 (234)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHHHcCC
Confidence             111222222223222        12 24799999997 99999999999987653

>PRK13808 adenylate kinase; Provisional

Probab=99.64  E-value=1e-14  Score=127.15  Aligned_cols=167  Identities=19%  Similarity=0.228  Sum_probs=96.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHH----HHHHHHHHHhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNY----IAAQDIKQDLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~i~~~l~  129 (259)
                      -|+|.||+||||||+++.|++.++..+++.    ++.+++.+........  ..++..    ...    .+.+.+.....
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~----gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~   77 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST----GDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA   77 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecc----cHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            389999999999999999999999877753    2334443322211100  000000    011    12222222112


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHHHhhcc-------CCch
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQRLSRRK-------NFTL  201 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-------~~~~  201 (259)
                      ...+|+|.|+......                  ..+... ......||++|||++|++++++|+..|.       ...+
T Consensus        78 ~~G~ILDGFPRt~~QA------------------~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R  139 (333)
T PRK13808         78 ANGFILDGFPRTVPQA------------------EALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVR  139 (333)
T ss_pred             cCCEEEeCCCCCHHHH------------------HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccC
Confidence            4568888776543211                  111111 1123569999999999999999999872       1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------C-CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        202 EENELKKNAKFRELLTTIYRNM-------N-NP-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~~~y~~~-------~-~~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .+++   ...+.+++ ..|.+.       + .. .++.||++.+ +++|+++|...|..+.
T Consensus       140 ~DD~---~E~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~s-iEEV~eeI~~~L~~~~  195 (333)
T PRK13808        140 ADDT---PEVLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMT-IDEVTREIGRVLAAVG  195 (333)
T ss_pred             CCCC---HHHHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence            2221   11222333 334332       1 22 3789999988 9999999999998754

>PRK14527 adenylate kinase; Provisional

Probab=99.63  E-value=6.1e-14  Score=114.37  Aligned_cols=165  Identities=18%  Similarity=0.215  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHHHHHHHHHh---
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIAAQDIKQDL---  128 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~l---  128 (259)
                      .++|+|.|++||||||+++.|++.++..+++.    .+-+++.+.....+...  .++.    .........+...+   
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~----gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST----GDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc----cHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            45699999999999999999999999877643    22333333222111110  0000    00011222233322   


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL  206 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~  206 (259)
                      .+..+|+|.|+.+....                  ..+..++. ....++.+|||++|++++.+|+.+|+.. .+.++. 
T Consensus        82 ~~~~~VlDGfpr~~~q~------------------~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~-  142 (191)
T PRK14527         82 EPVRVIFDGFPRTLAQA------------------EALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDN-  142 (191)
T ss_pred             CCCcEEEcCCCCCHHHH------------------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCC-
Confidence            13568999876542111                  11111111 1234788999999999999999999632 222221 


Q ss_pred             HHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        207 KKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                         .+..++..+.|.+.        .. ..++.||++++ +++++++|...|
T Consensus       143 ---~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l  190 (191)
T PRK14527        143 ---EETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGT-PDEVYARILKAL  190 (191)
T ss_pred             ---HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHhh
Confidence               11222222222221        12 23789999998 999999998876

>PHA03132 thymidine kinase; Provisional

Probab=99.63  E-value=7.9e-15  Score=135.58  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc--cccCCCCc--------hHHHHHHhccc--cch--HH-----HHHHH-----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSS--------IMSLREKFDAH--DSL--LR-----RAYYS-----  114 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~--~~~~p~~~--------~~~~~~~~~~~--~~~--~~-----~~~~~-----  114 (259)
                      ++|+|+|++||||||+++.|+++++..  .+.+|...        +..+++.+...  ..+  ..     ...|+     
T Consensus       258 ~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl~  337 (580)
T PHA03132        258 CFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFRA  337 (580)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHH
Confidence            459999999999999999999998333  45677642        35555554321  111  00     11122     


Q ss_pred             -HHH-HHH---HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc--cCCCCCEEEEEecCH
Q psy16563        115 -LGN-YIA---AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK--DLMKPDLVIYLTVSE  186 (259)
Q Consensus       115 -~~~-~~~---~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~pdlvI~L~a~~  186 (259)
                       +++ +..   ...+.+.+ .+.+||+|||+.++.++.....+..+. .    ....+..+..  ....||++|||++++
T Consensus       338 ~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~-l----s~~e~~~lL~~~~~~~PDLiIyLdv~p  412 (580)
T PHA03132        338 LATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGM-L----SFSHFIQLLSTFRAHEGDVIVLLKLNS  412 (580)
T ss_pred             HHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhcccccc-C----CHHHHHHHHHHhcccCCCEEEEEeCCH
Confidence             111 111   11122233 478999999999998743221112221 1    1222222221  124599999999999


Q ss_pred             HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        187 AIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       187 ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      +++++|+.+|++.  .+.  ....+|++++++.|..+
T Consensus       413 e~alkRIkkRgR~--~E~--~IdleYL~rLre~Y~~l  445 (580)
T PHA03132        413 EENLRRVKKRGRK--EEK--GINLTYLKELNWAYHAV  445 (580)
T ss_pred             HHHHHHHHhcCch--hhh--cCCHHHHHHHHHHHHHH
Confidence            9999999999853  111  01456888888887765

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.61  E-value=9.7e-15  Score=115.16  Aligned_cols=157  Identities=19%  Similarity=0.296  Sum_probs=96.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHH-----HHHHHHHhC-CCcEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA-----AQDIKQDLQ-KQPVV  134 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~l~-~~~vi  134 (259)
                      |++.|++||||||+++.||+.|+..++....    .+-+...    ..-..+|....+..     .+.+...+. +..||
T Consensus         5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~----~Ie~~~g----~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~Vi   76 (172)
T COG0703           5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQ----EIEKRTG----MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVI   76 (172)
T ss_pred             EEEEcCCCCCHhHHHHHHHHHcCCCcccchH----HHHHHHC----cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEE
Confidence            9999999999999999999999999986532    1111111    11122333332222     233444443 33454


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc-CCchH-HHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-NFTLE-ENELKKNAKF  212 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-~~~~~-~~~~e~~~~~  212 (259)
                      .-               |||. +.-++.+..+...       ..+|||++|+|+.++|+.... ++--. .+..+...+.
T Consensus        77 aT---------------GGG~-v~~~enr~~l~~~-------g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L  133 (172)
T COG0703          77 AT---------------GGGA-VLSEENRNLLKKR-------GIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEEL  133 (172)
T ss_pred             EC---------------CCcc-ccCHHHHHHHHhC-------CeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHH
Confidence            43               6665 2223334443321       269999999999999998322 21100 1111224456


Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       213 ~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +++....|++.+   .++++++..+ ++++++|.+.+...
T Consensus       134 ~~~R~~~Y~e~a---~~~~~~~~~~-~~v~~~i~~~l~~~  169 (172)
T COG0703         134 LEERQPLYREVA---DFIIDTDDRS-EEVVEEILEALEGS  169 (172)
T ss_pred             HHHHHHHHHHhC---cEEecCCCCc-HHHHHHHHHHHHHh
Confidence            677777787764   4999999985 99999999988754

>PRK02496 adk adenylate kinase; Provisional

Probab=99.60  E-value=1.8e-13  Score=110.95  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=92.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh----C
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL----Q  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l----~  129 (259)
                      .|+|.|++||||||+++.|++.++..++..    ++.+++.+.....+..  ..+..    .........+...+    .
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~----~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~   78 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST----GDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA   78 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEh----HHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc
Confidence            389999999999999999999998776642    2233333322211100  00000    00111222222222    2


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ...+|+|.|+.+....                  ..+...+. ....||++|+|++|++++.+|+..|++.+..+     
T Consensus        79 ~~g~vldGfPr~~~q~------------------~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~-----  135 (184)
T PRK02496         79 ANGWILDGFPRKVTQA------------------AFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTE-----  135 (184)
T ss_pred             cCCEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCH-----
Confidence            3467888776543111                  11111111 12358999999999999999999997543221     


Q ss_pred             HHHHHHHHHHHHHh-------c-CC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        209 NAKFRELLTTIYRN-------M-NN-PELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       209 ~~~~~~~~~~~y~~-------~-~~-~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                        +++++....|.+       . .. ..++.||++++ ++++.++|.+.|.
T Consensus       136 --~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~-~~~V~~~i~~~l~  183 (184)
T PRK02496        136 --EVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQS-VEAVTTELKAALA  183 (184)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHhC
Confidence              122333333333       1 12 24789999998 9999999998773

>KOG3079|consensus

Probab=99.60  E-value=8.3e-14  Score=109.74  Aligned_cols=165  Identities=16%  Similarity=0.251  Sum_probs=101.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-ccchHH--HHHHHH----HHHHHHHHHHHHh-
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HDSLLR--RAYYSL----GNYIAAQDIKQDL-  128 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~i~~~l-  128 (259)
                      +.+||.+.|+|||||.|++..+++.++..|++.    ++-+|+.... ..+...  ..++..    ........++..+ 
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSa----GdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~   82 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSA----GDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR   82 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecH----HHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence            478899999999999999999999999887743    4555655554 222110  011110    0112222233222 


Q ss_pred             ---CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCC-CCCEEEEEecCHHHHHHHHhhccCC-chHH
Q psy16563        129 ---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM-KPDLVIYLTVSEAIRLQRLSRRKNF-TLEE  203 (259)
Q Consensus       129 ---~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~  203 (259)
                         .....++|.|+..                     .+++..|-+... .|++++|++|++|++.+|+..|+.. .+.+
T Consensus        83 ~~~~~~~fLIDGyPR~---------------------~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~D  141 (195)
T KOG3079|consen   83 SSGDSNGFLIDGYPRN---------------------VDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSD  141 (195)
T ss_pred             hcCCCCeEEecCCCCC---------------------hHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCC
Confidence               2233677766543                     333333333333 5899999999999999999999843 2333


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-------CC--CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        204 NELKKNAKFRELLTTIYRNM-------NN--PELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       204 ~~~e~~~~~~~~~~~~y~~~-------~~--~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ++    .+-.++..+.|.+.       .+  .....||++.+ +++++.++.+.+..
T Consensus       142 Dn----~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~-~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  142 DN----EESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERS-VDDVFEEVVTAIDA  193 (195)
T ss_pred             Cc----hHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCC-HHHHHHHHHHHhhc
Confidence            32    22223333333332       11  25789999998 99999999998865

>PRK14528 adenylate kinase; Provisional

Probab=99.59  E-value=1.2e-13  Score=112.21  Aligned_cols=166  Identities=19%  Similarity=0.220  Sum_probs=91.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHH----HHHHHHHHHhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNY----IAAQDIKQDLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~i~~~l~  129 (259)
                      .|+|.|+|||||||+++.|++.++..++..    .+.+++.+..+..+..  ..+...    ...    .+.+.+.....
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~----~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~   78 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQIST----GDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC   78 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeC----CHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc
Confidence            489999999999999999999999877643    2333443332222111  011100    001    11222222112


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH--
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE--  205 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~--  205 (259)
                      ...+|+|.|+.+...                  ...+..++ .....||++|+|++|++++.+|+..|... .+.++.  
T Consensus        79 ~~g~viDG~Pr~~~q------------------a~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e  140 (186)
T PRK14528         79 KNGFLLDGFPRTVEQ------------------ADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEA  140 (186)
T ss_pred             cCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHH
Confidence            356788876554211                  11122221 12345999999999999999999988411 111111  


Q ss_pred             --HHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHH
Q psy16563        206 --LKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVEL  248 (259)
Q Consensus       206 --~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~  248 (259)
                        ......|........+-+.. ..++.||++++ ++++++.|.+.
T Consensus       141 ~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~-~~~v~~~~~~~  185 (186)
T PRK14528        141 TIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGS-LEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHh
Confidence              11112222222222221222 24899999998 99999998764

>PRK14530 adenylate kinase; Provisional

Probab=99.58  E-value=1.6e-13  Score=114.02  Aligned_cols=164  Identities=23%  Similarity=0.311  Sum_probs=91.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-----ccchH-HHHHHHH----HHHHHHHHHHHHh-
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-----HDSLL-RRAYYSL----GNYIAAQDIKQDL-  128 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~~-~~~~~~~----~~~~~~~~i~~~l-  128 (259)
                      .|+|.|++||||||+++.|++.++..++..    ++.+++....     ...+. ....+..    ........+...+ 
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~----g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT----GDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEec----cHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            499999999999999999999999877643    2233332210     00000 0000000    0112223333333 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC---------
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---------  199 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---------  199 (259)
                      ....+|+|.|+.+..                  ....+..    ...++++|||++|++++++|+.+|...         
T Consensus        81 ~~~~~IldG~pr~~~------------------q~~~l~~----~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~  138 (215)
T PRK14530         81 DADGFVLDGYPRNLE------------------QAEYLES----ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHV  138 (215)
T ss_pred             cCCCEEEcCCCCCHH------------------HHHHHHH----hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCcccc
Confidence            345677886543310                  1111211    134899999999999999999888521         


Q ss_pred             -------------------chHHHHHH----HHHHHHH---HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 -------------------TLEENELK----KNAKFRE---LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 -------------------~~~~~~~e----~~~~~~~---~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                                         .+.++..+    ....|.+   .+.+.|.+  ...++.||++++ ++++++.|.+.|...
T Consensus       139 ~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~l~~~  214 (215)
T PRK14530        139 EFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRD--QGVLVEVDGEQT-PDEVWADIQDAIDDA  214 (215)
T ss_pred             CCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--CCcEEEEECCCC-HHHHHHHHHHHHhcc
Confidence                               00111000    0111111   12222222  124789999998 999999999998753

>PLN02674 adenylate kinase

Probab=99.58  E-value=1.7e-13  Score=114.99  Aligned_cols=165  Identities=14%  Similarity=0.152  Sum_probs=96.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL----  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l----  128 (259)
                      +.|+|.|+|||||||+++.|++.++..+++.    ++.+|+.+..+..+...  .++..    ........+...+    
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~----GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~  107 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLAT----GDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  107 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEch----hHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence            4599999999999999999999999888753    44555544333222110  01110    0112222333332    


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC--------
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF--------  199 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--------  199 (259)
                      .+..+|+|.|+.+....                  ..+..++ .....+|.+|+|++|.+++.+|+..|.-.        
T Consensus       108 ~~~g~ilDGfPRt~~Qa------------------~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn  169 (244)
T PLN02674        108 CQKGFILDGFPRTVVQA------------------QKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYH  169 (244)
T ss_pred             cCCcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccc
Confidence            24678899887643211                  1111111 11245899999999999999999988310        


Q ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        200 --------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       200 --------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                                          .+.++.    .+..++..+.|.+.        .. ..++.||++++ +++++++|..+|.
T Consensus       170 ~~~~pp~~~~~~~~~g~~L~~R~DD~----~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~-~~eV~~~i~~~l~  244 (244)
T PLN02674        170 TKFAPPKVPGVDDVTGEPLIQRKDDT----AAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKP-PKEVTAEVQKALS  244 (244)
T ss_pred             cccCCCcccCcccccCCccccCCCCC----HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHhC
Confidence                                011111    12222222223322        11 23789999998 9999999998763

>TIGR01351 adk adenylate kinases

Probab=99.58  E-value=1.9e-13  Score=113.11  Aligned_cols=160  Identities=25%  Similarity=0.314  Sum_probs=90.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh-----C
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL-----Q  129 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l-----~  129 (259)
                      |+|.|++||||||+|+.|++.++..+++.    ++-+++.+.....+...  .+...    ......+.+...+     .
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~----gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~   77 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST----GDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDN   77 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeeh----hHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Confidence            88999999999999999999999887753    22333333222111000  00000    0011222222222     2


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC----------
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF----------  199 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~----------  199 (259)
                      +..+|+|.|+.+...                  ...+..+..  ..|+++|+|++|++++++|+.+|.-.          
T Consensus        78 ~~~~ilDGfPrt~~Q------------------a~~l~~~~~--~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~  137 (210)
T TIGR01351        78 ENGFILDGFPRTLSQ------------------AEALDALLK--EKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLK  137 (210)
T ss_pred             CCcEEEeCCCCCHHH------------------HHHHHHHhc--cCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccc
Confidence            467889977654211                  111111111  05899999999999999999998500          


Q ss_pred             ------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        200 ------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       200 ------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                                        .+.++.    .+..++....|.+.        .. ..++.||++++ +++++++|.+.|
T Consensus       138 ~~~p~~~~~~~~~~~~l~~R~dD~----~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~-~~~v~~~i~~~l  209 (210)
T TIGR01351       138 FNPPKVPGCDDCTGELLIQREDDT----EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGP-IDEVWKRILEAL  209 (210)
T ss_pred             cCCCccCCcCcccCCccccCCCCC----HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHhh
Confidence                              011111    11222222223221        11 24788999997 999999998876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK03839 putative kinase; Provisional

Probab=99.57  E-value=1.6e-13  Score=110.85  Aligned_cols=151  Identities=23%  Similarity=0.268  Sum_probs=86.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK-FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF  138 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~  138 (259)
                      .|+|.|++||||||+++.|++.++..++...    +.+++. +...  ....  .......+...+.....+..+|+|.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d----~~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~vIidG~   73 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT----EFALKKGIGEE--KDDE--MEIDFDKLAYFIEEEFKEKNVVLDGH   73 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh----hhhhhcCCccc--CChh--hhcCHHHHHHHHHHhccCCCEEEEec
Confidence            5999999999999999999999998876531    111110 0000  0000  00001122222322233455777742


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH-HH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LT  217 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~-~~  217 (259)
                      ..                               .+..+|.+|||+++++++.+|+..|+........ .....+.+. +.
T Consensus        74 ~~-------------------------------~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~-~~~~~~~~~~~~  121 (180)
T PRK03839         74 LS-------------------------------HLLPVDYVIVLRAHPKIIKERLKERGYSKKKILE-NVEAELVDVCLC  121 (180)
T ss_pred             cc-------------------------------cccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHH
Confidence            10                               0124789999999999999999988732111100 000111111 11


Q ss_pred             HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       218 ~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +.|.+  ..++++||+++.++++++++|.+.+...
T Consensus       122 ~~~~~--r~~~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        122 EALEE--KEKVIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             HHHHh--cCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            22221  2357899998766999999999999754

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.56  E-value=2.4e-13  Score=112.92  Aligned_cols=167  Identities=23%  Similarity=0.267  Sum_probs=92.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHHHh----C
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQDL----Q  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~l----~  129 (259)
                      .|+|.|++||||||+++.||+.++..+++..    +.+++.+.........  .++..    ........+...+    .
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~----dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~   77 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG----DMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC   77 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECC----ccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc
Confidence            4999999999999999999999998877531    2223222221111000  00000    0011222222222    2


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCC---------
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNF---------  199 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---------  199 (259)
                      +..+|+|.|+.....                  ...+..++. ....++.+|+|+||.+++++|+..|...         
T Consensus        78 ~~g~VlDGfPr~~~q------------------a~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~  139 (215)
T PRK00279         78 KNGFLLDGFPRTIPQ------------------AEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHV  139 (215)
T ss_pred             cCCEEEecCCCCHHH------------------HHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccc
Confidence            347889987654211                  111211211 1234789999999999999999988410         


Q ss_pred             -------------------chHHH-------HHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        200 -------------------TLEEN-------ELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       200 -------------------~~~~~-------~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                                         .+.++       ++.........+.+.|...  ..++.||++++ +++++++|.+.|..
T Consensus       140 ~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~--~~~~~id~~~~-~~~v~~~i~~~l~~  214 (215)
T PRK00279        140 KFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKK--GKLKKIDGTGS-IDEVFADILKALGK  214 (215)
T ss_pred             cCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC--CCEEEEECCCC-HHHHHHHHHHHHhc
Confidence                               01111       1111111112223333221  23789999988 99999999999864

>PRK13949 shikimate kinase; Provisional

Probab=99.56  E-value=7.9e-14  Score=111.49  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=83.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF  138 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~  138 (259)
                      |+|.|++||||||+++.|++.++..++....    .+.+.+.... .+....-....+......+.... ....||..  
T Consensus         4 I~liG~~GsGKstl~~~La~~l~~~~id~D~----~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~--   77 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELGLSFIDLDF----FIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVIST--   77 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeecccH----HHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEc--
Confidence            9999999999999999999999988775421    1111111110 00000000000112222333322 23445544  


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhc--cCCchHHHHHHHHHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR--KNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R--~~~~~~~~~~e~~~~~~~~~  216 (259)
                                   |+|. +..++....+       ...+++|||++|++++.+|+..+  +++.......+...+++..+
T Consensus        78 -------------Ggg~-~~~~~~~~~l-------~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l  136 (169)
T PRK13949         78 -------------GGGA-PCFFDNMELM-------NASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEA  136 (169)
T ss_pred             -------------CCcc-cCCHHHHHHH-------HhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH
Confidence                         3333 1111112222       22467999999999999999753  22211000001112222222


Q ss_pred             HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563        217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVEL  248 (259)
Q Consensus       217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~  248 (259)
                      .+.+..++....++||+++.++++++++|.+.
T Consensus       137 ~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        137 LEKRAPFYRQAKIIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHh
Confidence            22333332212388999998799999988764

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.53  E-value=2.7e-13  Score=108.74  Aligned_cols=165  Identities=21%  Similarity=0.227  Sum_probs=101.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR  137 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr  137 (259)
                      |+|.++|+|||||||+++.||+.|.......+...-+..+-...++. ......+......-.++.+-.+++...||+|.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDd   81 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDD   81 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEec
Confidence            67999999999999999999999987755443322222221111111 11111222222222333444556788999994


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT  217 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~  217 (259)
                      ..+    |..              ..++|+...+....+..+|||.||+++|.+|-..|+.+-+.+        .++++.
T Consensus        82 tNY----yks--------------mRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~E--------vl~qly  135 (261)
T COG4088          82 TNY----YKS--------------MRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEE--------VLRQLY  135 (261)
T ss_pred             ccH----HHH--------------HHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHH--------HHHHHH
Confidence            321    111              135666666666778889999999999999998888654332        445666


Q ss_pred             HHHHhcC-----CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        218 TIYRNMN-----NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       218 ~~y~~~~-----~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      +.|++-.     +.+.++||++.. ..+..+.|...+.
T Consensus       136 ~RfEePn~~~rWDspll~id~~d~-~t~~IDfiesvl~  172 (261)
T COG4088         136 DRFEEPNPDRRWDSPLLVIDDSDV-STEVIDFIESVLR  172 (261)
T ss_pred             HhhcCCCCCccccCceEEEecccc-cccchhHHHHHHH
Confidence            6666542     346788887655 5666666666654

>PRK04182 cytidylate kinase; Provisional

Probab=99.53  E-value=1.3e-12  Score=105.09  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=87.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-c---hHHH--HHHHHHHHHHHHHHHHHh-CCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-S---LLRR--AYYSLGNYIAAQDIKQDL-QKQ  131 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~---~~~~--~~~~~~~~~~~~~i~~~l-~~~  131 (259)
                      ++|+|.|++||||||+++.|++.++..++..    .+.+++...... .   +...  ...... ......+.... .+.
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   75 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSA----GEIFRELAKERGMSLEEFNKYAEEDPEID-KEIDRRQLEIAEKED   75 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecH----HHHHHHHHHHcCCCHHHHHHHhhcCchHH-HHHHHHHHHHHhcCC
Confidence            4699999999999999999999999877642    111222211110 0   0000  000000 01112222222 444


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK  211 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~  211 (259)
                      .+|++....             +.             ...  ..++++|||++|++++.+|+..|++....+.... ...
T Consensus        76 ~~Vi~g~~~-------------~~-------------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~-~~~  126 (180)
T PRK04182         76 NVVLEGRLA-------------GW-------------MAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEE-TIE  126 (180)
T ss_pred             CEEEEEeec-------------ce-------------Eec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHH-HHH
Confidence            555552100             00             001  1268899999999999999999875432222110 001


Q ss_pred             HHHHHHHHHHhcC-------CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        212 FRELLTTIYRNMN-------NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       212 ~~~~~~~~y~~~~-------~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ........|..+.       ....++||+++.+++++++.|.+.+...
T Consensus       127 ~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~  174 (180)
T PRK04182        127 REESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKL  174 (180)
T ss_pred             HHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence            1111122233221       1125899999988999999999998764

>PRK14529 adenylate kinase; Provisional

Probab=99.52  E-value=1e-12  Score=109.12  Aligned_cols=116  Identities=22%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHH----HHHHHHHHHHHHHh---CC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYS----LGNYIAAQDIKQDL---QK  130 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~i~~~l---~~  130 (259)
                      .|+|.|++||||||+++.|++.++..+++.    +..+++.+.....+..  +.+..    +........+...+   ..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~----gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~   77 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIES----GAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGK   77 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCccc----chhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCC
Confidence            489999999999999999999999887642    1222222221111100  00000    00011122222222   14


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ..+|+|.|+.+....                  ..+..++ .....||.+|+|++|.+++.+|+..|.
T Consensus        78 ~g~iLDGfPRt~~Qa------------------~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~  127 (223)
T PRK14529         78 NGWLLDGFPRNKVQA------------------EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR  127 (223)
T ss_pred             CcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence            668898776653211                  1111111 112469999999999999999999883

>PLN02459 probable adenylate kinase

Probab=99.52  E-value=2.2e-12  Score=108.98  Aligned_cols=169  Identities=15%  Similarity=0.186  Sum_probs=97.4

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHH----HHHH
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYI----AAQD  123 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~----~~~~  123 (259)
                      ..++.+.|+|.|+|||||||+++.|++.++..+++.    ++.+|+.+.....+...  .+..    +.-..    +.+.
T Consensus        25 ~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~----gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~  100 (261)
T PLN02459         25 AKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIAT----GDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKR  100 (261)
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeC----cHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence            334445688899999999999999999999887743    33444444332222110  0000    00111    1222


Q ss_pred             HHHHh--CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C-
Q psy16563        124 IKQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F-  199 (259)
Q Consensus       124 i~~~l--~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~-  199 (259)
                      +....  ....+|+|.|+.+....                  ..+..    ...++.+|+|++|.+++++|+..|.- . 
T Consensus       101 l~~~~~~~~~g~iLDGFPRt~~Qa------------------~~Le~----~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~  158 (261)
T PLN02459        101 LEAGEEEGESGFILDGFPRTVRQA------------------EILEG----VTDIDLVVNLKLREEVLVEKCLGRRICSE  158 (261)
T ss_pred             HhcccccCCceEEEeCCCCCHHHH------------------HHHHh----cCCCCEEEEEECCHHHHHHHhhccccccc
Confidence            22211  23568888776543111                  11111    13479999999999999999998841 0 


Q ss_pred             -------------------------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeC
Q psy16563        200 -------------------------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDN  233 (259)
Q Consensus       200 -------------------------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~  233 (259)
                                                           .+.++    ..+..++....|.+.        .. ..++.||+
T Consensus       159 ~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD----~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~  234 (261)
T PLN02459        159 CGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADD----TEEVVKARLRVYKEESQPVEDFYRKRGKLLEFEL  234 (261)
T ss_pred             cCccccccccccccccccccccCCCCCCCcccccccccCCCC----CHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeC
Confidence                                                 01111    122222222233322        11 23788999


Q ss_pred             CCCCHhhHHHHHHHHHhccc
Q psy16563        234 SEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       234 s~~~~eev~~~I~~~l~~~~  253 (259)
                      +++ +++++++|.+.|..-.
T Consensus       235 ~~~-~~eV~~~i~~~l~~~~  253 (261)
T PLN02459        235 PGG-IPETWPRLLQALNLDD  253 (261)
T ss_pred             CCC-HHHHHHHHHHHhchhh
Confidence            998 9999999999996543

>PRK08233 hypothetical protein; Provisional

Probab=99.51  E-value=8.4e-13  Score=106.39  Aligned_cols=162  Identities=16%  Similarity=0.148  Sum_probs=92.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc-ccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCC---
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-KSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK---  130 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~---  130 (259)
                      .+|+|.|++||||||+++.|++.++... +.....    ....+..+......+ .    ......+.+.+.....+   
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~   78 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY-S----EWVLTPLIKDIQELIAKSNV   78 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh-h----hhhhHHHHHHHHHHHcCCCc
Confidence            5699999999999999999999997432 111110    011233333332211 0    11112233344444432   


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHH
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKN  209 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~  209 (259)
                      ..||.|. ...   +                ....+      ...+|++|||++|++++++|+..|+..+.. +...+..
T Consensus        79 ~~vivd~-~~~---~----------------~~~~~------~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~  132 (182)
T PRK08233         79 DYIIVDY-PFA---Y----------------LNSEM------RQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDL  132 (182)
T ss_pred             eEEEEee-ehh---h----------------ccHHH------HHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHH
Confidence            3455551 110   0                00011      122689999999999999998877532111 1111224


Q ss_pred             HHHHHHHHHHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        210 AKFRELLTTIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       210 ~~~~~~~~~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+.......|.++.    ...+++||++.+ ++++.++|.+.+...
T Consensus       133 ~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~-~e~i~~~i~~~l~~~  178 (182)
T PRK08233        133 KHYLNYARPLYLEALHTVKPNADIVLDGALS-VEEIINQIEEELYRR  178 (182)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCeEEEcCCCC-HHHHHHHHHHHHHhC
Confidence            456666777777652    124688998876 999999999998754

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.51  E-value=8.7e-13  Score=105.80  Aligned_cols=160  Identities=18%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM  135 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~  135 (259)
                      .|+|.|++||||||+++.|++.++..++.....-    +..+...|...+   . ..|.   ....+.+........++.
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g---~-~~fr---~~e~~~l~~l~~~~~~vi   78 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEG---E-EGFR---DREEKVINELTEKQGIVL   78 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhC---H-HHHH---HHHHHHHHHHHhCCCEEE
Confidence            3999999999999999999999988776442210    001111111110   0 0111   111223333322222333


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFR  213 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~~  213 (259)
                      .              .|++. +.-++....+       ...+.+|||++|++++++|+..+......  ....+......
T Consensus        79 ~--------------~ggg~-v~~~~~~~~l-------~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~  136 (172)
T PRK05057         79 A--------------TGGGS-VKSRETRNRL-------SARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALA  136 (172)
T ss_pred             E--------------cCCch-hCCHHHHHHH-------HhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Confidence            2              13332 1111111222       12467999999999999999765421101  00011123344


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      +.....|.+.++   ++||+++.++++++++|.+.+..
T Consensus       137 ~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        137 NERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             HHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHhh
Confidence            555667766654   89999998899999999988754

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.50  E-value=2.5e-12  Score=102.91  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=87.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHH-hcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREK-FDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF  138 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~  138 (259)
                      |.|.|++||||||+++.||+.++..++...     .+.+. +.... .+....-....+....+.+.....+..||.-  
T Consensus         5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D-----~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~--   77 (171)
T PRK03731          5 LFLVGARGCGKTTVGMALAQALGYRFVDTD-----QWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIAT--   77 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEcc-----HHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEEC--
Confidence            899999999999999999999998877542     11111 11110 0000000000011111222221123333332  


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chH---HHH-HHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLE---ENE-LKKNAKFR  213 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~---~~~-~e~~~~~~  213 (259)
                                   |+++  .+.+   ....++   ...+++|||++|++++.+|+..|... .+.   ... .+...+.+
T Consensus        78 -------------ggg~--vl~~---~~~~~l---~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~  136 (171)
T PRK03731         78 -------------GGGI--ILTE---ENRHFM---RNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVL  136 (171)
T ss_pred             -------------CCCc--cCCH---HHHHHH---HhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHH
Confidence                         2222  1111   111222   12467999999999999999887421 100   000 11234566


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ++....|.+..   .++||++.+ +++++++|.+.+.+
T Consensus       137 ~~r~~~y~~~a---~~~Id~~~~-~e~v~~~i~~~l~~  170 (171)
T PRK03731        137 AEREALYREVA---HHIIDATQP-PSQVVSEILSALAQ  170 (171)
T ss_pred             HHHHHHHHHhC---CEEEcCCCC-HHHHHHHHHHHHhc
Confidence            66677777654   489999976 99999999998864

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.49  E-value=9.8e-13  Score=115.02  Aligned_cols=196  Identities=15%  Similarity=0.223  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCch
Q psy16563         15 VSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI   94 (259)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~   94 (259)
                      ..+...+++...+....+..+++.+-+..       ....++.  .|+|+|++||||||+++.|++.+|..++...    
T Consensus        99 ~~l~~~l~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~--~I~l~G~~GsGKStvg~~La~~Lg~~~id~D----  165 (309)
T PRK08154         99 LLIRELLEQASPAQLARVRDALSGMLGAG-------RRAARRR--RIALIGLRGAGKSTLGRMLAARLGVPFVELN----  165 (309)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhhh-------hhccCCC--EEEEECCCCCCHHHHHHHHHHHcCCCEEeHH----
Confidence            34555566644555555666665443221       1234433  4999999999999999999999998877321    


Q ss_pred             HHHHHHhccccchHHHHHHHH-----HHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc
Q psy16563         95 MSLREKFDAHDSLLRRAYYSL-----GNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS  168 (259)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~  168 (259)
                      ..+.+..+..  .  ..++..     .+....+.+...+ ....+|+.+              |++. ...+..+..+  
T Consensus       166 ~~i~~~~G~~--i--~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~--------------Ggg~-v~~~~~~~~l--  224 (309)
T PRK08154        166 REIEREAGLS--V--SEIFALYGQEGYRRLERRALERLIAEHEEMVLAT--------------GGGI-VSEPATFDLL--  224 (309)
T ss_pred             HHHHHHhCCC--H--HHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC--------------CCch-hCCHHHHHHH--
Confidence            1111111111  0  011100     0111122333333 223334331              2221 1111112222  


Q ss_pred             ccccCCCCCEEEEEecCHHHHHHHHhhccCCch---HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563        169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       169 ~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I  245 (259)
                           ....++|||++|++++.+|+.+|+...+   .....+......+.....|..    ..++||+++.+++++.++|
T Consensus       225 -----~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~----ad~~I~t~~~s~ee~~~~I  295 (309)
T PRK08154        225 -----LSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYAR----ADAVVDTSGLTVAQSLARL  295 (309)
T ss_pred             -----HhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHh----CCEEEECCCCCHHHHHHHH
Confidence                 1235699999999999999998863211   111111122233344445532    3478999997799999999


Q ss_pred             HHHHhccc
Q psy16563        246 VELIHNLP  253 (259)
Q Consensus       246 ~~~l~~~~  253 (259)
                      ...+..+.
T Consensus       296 ~~~l~~~~  303 (309)
T PRK08154        296 RELVRPAL  303 (309)
T ss_pred             HHHHHHHh
Confidence            99997654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.49  E-value=8.4e-13  Score=112.09  Aligned_cols=162  Identities=23%  Similarity=0.234  Sum_probs=96.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF  138 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~  138 (259)
                      +|+|+|++||||||+|+.|++++....+..---..+.+++.+..........+    +......++..+ .+..||+|..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~----~~~~~~~i~~~l~~~~~VI~D~~   76 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFI----RDSTLYLIKTALKNKYSVIVDDT   76 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHH----HHHHHHHHHHHHhCCCeEEEecc
Confidence            48999999999999999999998643211000011334444321000000000    122233455555 5778999964


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT  218 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~  218 (259)
                      ....                  ...+.+.+.++....+.++|||++|.+++++|...|+....        .+.++.+..
T Consensus        77 ~~~~------------------~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~--------~~~i~~l~~  130 (249)
T TIGR03574        77 NYYN------------------SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP--------NEVIKDMYE  130 (249)
T ss_pred             chHH------------------HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC--------HHHHHHHHH
Confidence            3211                  11233444444445578899999999999999999875321        123344444


Q ss_pred             HHHhcC-----CCCeEEEeCCCC-CHhhHHHHHHHHHhc
Q psy16563        219 IYRNMN-----NPELVFVDNSEK-SVHESSNDIVELIHN  251 (259)
Q Consensus       219 ~y~~~~-----~~~~~vID~s~~-~~eev~~~I~~~l~~  251 (259)
                      .|+...     +.+.++||++.. +.+++++.|.+.+..
T Consensus       131 r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       131 KFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             hhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            454321     236799999863 578999999988754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK06762 hypothetical protein; Provisional

Probab=99.49  E-value=6e-13  Score=105.97  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc--cccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVV  134 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi  134 (259)
                      +++|+|.|++||||||+|+.|++.++..  ++.     .+.++..+...........    .....+..+..+ .|..||
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~-----~D~~r~~l~~~~~~~~~~~----~~~~~~~~~~~~~~g~~vi   72 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS-----QDVVRRDMLRVKDGPGNLS----IDLIEQLVRYGLGHCEFVI   72 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec-----HHHHHHHhccccCCCCCcC----HHHHHHHHHHHHhCCCEEE
Confidence            3569999999999999999999998532  222     2344442221100000000    001111222223 578888


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFR  213 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~  213 (259)
                      +|....... +.                 ..+.........+..+|||++|++++.+|...|+.. ...+          
T Consensus        73 ld~~~~~~~-~~-----------------~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~----------  124 (166)
T PRK06762         73 LEGILNSDR-YG-----------------PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGE----------  124 (166)
T ss_pred             EchhhccHh-HH-----------------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCH----------
Confidence            986543211 10                 011111122233678999999999999999999742 1111          


Q ss_pred             HHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        214 ELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       214 ~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      +.++..|....  .....+|++++.++++++++|...+.
T Consensus       125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        125 DDMRRWWNPHDTLGVIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             HHHHHHHhhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence            12223332221  11235777777669999999988764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.49  E-value=3.8e-12  Score=101.69  Aligned_cols=166  Identities=21%  Similarity=0.222  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhccccc-hHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHDS-LLRRAYYSLGNYIAAQDIKQDLQ-KQPVV  134 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~-~~~vi  134 (259)
                      .+.|+|.|++||||||+++.|++.++..++..     +.+. ..++.... +....-....+....+.+..... ...||
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~-----d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi   78 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT-----DHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVI   78 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC-----hHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEE
Confidence            34599999999999999999999999877643     1221 12211100 00000000001122223333332 22333


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKF  212 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~  212 (259)
                      ...               ++.  .+   ......++.   ...++|||++|++++.+|+..|......  +...+....+
T Consensus        79 ~~g---------------~~~--~~---~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~  135 (175)
T PRK00131         79 STG---------------GGA--VL---REENRALLR---ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDL  135 (175)
T ss_pred             EeC---------------CCE--ee---cHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHH
Confidence            321               110  00   011111221   2357999999999999999887631111  1111112223


Q ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        213 RELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       213 ~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .+.....|.+.+   .++||+++.+++++++.|.+.+..++.
T Consensus       136 ~~~~~~~~~~~~---dl~idt~~~~~~e~~~~I~~~v~~~~~  174 (175)
T PRK00131        136 YEERDPLYEEVA---DITVETDGRSPEEVVNEILEKLEAAWR  174 (175)
T ss_pred             HHHHHHHHHhhc---CeEEeCCCCCHHHHHHHHHHHHHhhcc
Confidence            333333344433   389999998899999999999987653

>PRK14526 adenylate kinase; Provisional

Probab=99.48  E-value=4.8e-12  Score=104.58  Aligned_cols=162  Identities=19%  Similarity=0.247  Sum_probs=89.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHHH--------HHHHHHHHHHHhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSLG--------NYIAAQDIKQDLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~i~~~l~  129 (259)
                      .|+|.|++||||||+++.|++.++..+++.    ++.+++.+........  ..++...        ...+.+.+.+...
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~----G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~   77 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHIST----GDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN   77 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeec----ChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc
Confidence            388999999999999999999998776642    2233332222111100  0000000        1122223322222


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C---------
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F---------  199 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~---------  199 (259)
                      ...+|+|.|+-+...                  ...+..+    .....+|+|++|++++.+|+..|.- .         
T Consensus        78 ~~g~ilDGfPR~~~Q------------------a~~l~~~----~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~  135 (211)
T PRK14526         78 NDNFILDGFPRNINQ------------------AKALDKF----LPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIY  135 (211)
T ss_pred             cCcEEEECCCCCHHH------------------HHHHHHh----cCCCEEEEEECCHHHHHHHHHCCCcccccCCccccc
Confidence            456778877654211                  1111111    1123578899999999999998841 0         


Q ss_pred             ------------------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 ------------------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 ------------------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                                        .+.++    ..+-.++....|.+.        .. ..++.||++++ ++++.++|.+.|.+.
T Consensus       136 ~~pp~~~~~~~~~~~~l~~R~DD----~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~-~~~V~~~i~~~l~~~  210 (211)
T PRK14526        136 TLPTKEKGICDVCKGDLYQRKDD----KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKD-IDEVKKKLIEIISKK  210 (211)
T ss_pred             cCCCCccCcCCCCCCeeeccCCC----CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHccc
Confidence                              01111    112222222233322        11 23789999998 999999999998753

>PRK00625 shikimate kinase; Provisional

Probab=99.48  E-value=2.7e-12  Score=102.79  Aligned_cols=162  Identities=15%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHH-----HHHHHHHHHhCCCcEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY-----IAAQDIKQDLQKQPVV  134 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~l~~~~vi  134 (259)
                      .|+|.|++||||||+++.||+.++..++....    .+.+............+|.....     .....+.....+..||
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~----~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VI   77 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD----LIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIV   77 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH----HHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEE
Confidence            49999999999999999999999988775421    11211111000000111111111     1112233222334455


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      ..               |+|. ..-++.+..+       .....+|||++|++++.+|+..|+....... .+...+.++
T Consensus        78 s~---------------GGg~-~~~~e~~~~l-------~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~-~~~~~~ll~  133 (173)
T PRK00625         78 AL---------------GGGT-LMIEPSYAHI-------RNRGLLVLLSLPIATIYQRLQKRGLPERLKH-APSLEEILS  133 (173)
T ss_pred             EC---------------CCCc-cCCHHHHHHH-------hcCCEEEEEECCHHHHHHHHhcCCCCcccCc-HHHHHHHHH
Confidence            33               3333 1111112211       2235799999999999999999864321111 122345567


Q ss_pred             HHHHHHHhcCCCC---eEEEeCCCCCHhhHHHHHHHHH
Q psy16563        215 LLTTIYRNMNNPE---LVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       215 ~~~~~y~~~~~~~---~~vID~s~~~~eev~~~I~~~l  249 (259)
                      +....|++.++.-   ..++++++.++-++.+.+...|
T Consensus       134 ~R~~~Y~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        134 QRIDRMRSIADYIFSLDHVAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             HHHHHHHHHCCEEEeCCCcccCCCCCHHHHHHHHHHHh
Confidence            7777887765311   1346667766777777777665

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.47  E-value=3.1e-12  Score=102.85  Aligned_cols=160  Identities=14%  Similarity=0.047  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCch-HHHHHHhcc-------cc---chHHHHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI-MSLREKFDA-------HD---SLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~-~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      ++|+|.|++||||||+++.|++.++..++......+ ..+...+..       ++   .... ..+..........+...
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPG-PEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccc-hHHHHHHHHHHHHHHHH
Confidence            359999999999999999999998765443211111 011000000       00   0000 01000001122223334


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      + .|..||+|-......                 .....+.. .  ...+-..|||+||.+++.+|+.+|++...  .  
T Consensus        82 l~~G~~VIvD~~~~~~~-----------------~~r~~~~~-~--~~~~~~~v~l~~~~~~l~~R~~~R~~~~~--~--  137 (175)
T cd00227          82 ARAGANVIADDVFLGRA-----------------ALQDCWRS-F--VGLDVLWVGVRCPGEVAEGRETARGDRVP--G--  137 (175)
T ss_pred             HhCCCcEEEeeeccCCH-----------------HHHHHHHH-h--cCCCEEEEEEECCHHHHHHHHHhcCCccc--h--
Confidence            4 688999984322100                 00011111 1  12345789999999999999999985321  0  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                           ......+.+... ...+++||+++.++++++++|.+.|
T Consensus       138 -----~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         138 -----QARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             -----HHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence                 111111222221 2237899999988999999988765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13948 shikimate kinase; Provisional

Probab=99.47  E-value=1.3e-12  Score=105.46  Aligned_cols=159  Identities=18%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVV  134 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi  134 (259)
                      .|+|.|++||||||+++.|++.++..++.....-    +..+.+.|...++    ..|   +....+.+..++ .+..||
T Consensus        12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge----~~f---R~~E~~~l~~l~~~~~~VI   84 (182)
T PRK13948         12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGE----AYF---RRCEAEVVRRLTRLDYAVI   84 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCH----HHH---HHHHHHHHHHHHhcCCeEE
Confidence            4999999999999999999999998887543100    0111222222111    011   112223334433 233344


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKNAKFR  213 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~~~~~  213 (259)
                      .-               |+|. ..-++....+.+       -..+|||++|++++.+|+..++++--. ....+.....+
T Consensus        85 a~---------------GgG~-v~~~~n~~~l~~-------~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~  141 (182)
T PRK13948         85 SL---------------GGGT-FMHEENRRKLLS-------RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLL  141 (182)
T ss_pred             EC---------------CCcE-EcCHHHHHHHHc-------CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHH
Confidence            32               3332 111222233321       245899999999999999544321100 01111123344


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++....|..    ..++||+++.++++++++|.+.+...
T Consensus       142 ~~R~~~Y~~----a~~~i~t~~~~~~ei~~~i~~~l~~~  176 (182)
T PRK13948        142 NEREPVYRQ----ATIHVSTDGRRSEEVVEEIVEKLWAW  176 (182)
T ss_pred             HHHHHHHHh----CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            555556633    34889999888999999999998764

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.46  E-value=3.4e-12  Score=101.32  Aligned_cols=155  Identities=14%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchH-HHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM-SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF  138 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~  138 (259)
                      |+|.|++||||||+++.|++.++..++....-... ..+...... .+....... ......+.+...+ .+..+|.+-.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~Vi~~t   78 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGI-PLNDDDRWP-WLQNLNDASTAAAAKNKVGIITCS   78 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCC-CCChhhHHH-HHHHHHHHHHHHHhcCCCEEEEec
Confidence            57899999999999999999998766643221101 111111111 110000000 0011122222222 4555555522


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT  218 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~  218 (259)
                      .... .                 ....+    .....+-.+|||++|++++.+|+..|++.....          +.+..
T Consensus        79 ~~~~-~-----------------~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~----------~~i~~  126 (163)
T TIGR01313        79 ALKR-H-----------------YRDIL----REAEPNLHFIYLSGDKDVILERMKARKGHFMKA----------DMLES  126 (163)
T ss_pred             ccHH-H-----------------HHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCH----------HHHHH
Confidence            1110 0                 01111    112223347999999999999999997421111          11222


Q ss_pred             HHHhc----C-CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        219 IYRNM----N-NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       219 ~y~~~----~-~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .|..+    . .+.+++||++++ ++++.+++.+.|-
T Consensus       127 ~~~~~~~~~~~e~~~~~id~~~~-~~~~~~~~~~~~~  162 (163)
T TIGR01313       127 QFAALEEPLADETDVLRVDIDQP-LEGVEEDCIAVVL  162 (163)
T ss_pred             HHHHhCCCCCCCCceEEEECCCC-HHHHHHHHHHHHh
Confidence            22222    2 235899999999 9999999988763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.46  E-value=7.3e-12  Score=102.37  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      +|.+|+++||++++.+|+.+|++.+.++.        .+++.......  .....++|||+++ ++++..++.++++.
T Consensus       125 ~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~--------~~ri~~Q~~~~~~~~~ad~vI~N~g~-~e~l~~qv~~i~~~  193 (194)
T PRK00081        125 VDRVLVVDAPPETQLERLMARDGLSEEEA--------EAIIASQMPREEKLARADDVIDNNGD-LEELRKQVERLLQE  193 (194)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHHhCCHHHHHHhCCEEEECCCC-HHHHHHHHHHHHHh
Confidence            68999999999999999999976543321        12221111000  0123589999987 99999999988764

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.46  E-value=6.6e-12  Score=102.66  Aligned_cols=66  Identities=21%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH--hcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~--~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .|.+|+++||++++.+|+..|++.+..+.        .+++.....  .......++|+|+++ +++..+++.+++.
T Consensus       126 ~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~--------~~ri~~Q~~~~~k~~~aD~vI~N~g~-~e~l~~qv~~~l~  193 (195)
T PRK14730        126 CSEIWVVDCSPEQQLQRLIKRDGLTEEEA--------EARINAQWPLEEKVKLADVVLDNSGD-LEKLYQQVDQLLK  193 (195)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHhCCCHHHHHhhCCEEEECCCC-HHHHHHHHHHHHh
Confidence            58899999999999999999976554332        122221110  011224588999997 9999999987763

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.45  E-value=2.3e-12  Score=104.67  Aligned_cols=72  Identities=24%  Similarity=0.248  Sum_probs=49.6

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccccc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMF  255 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~~  255 (259)
                      +-.+|||++|++++.+|+..|++...++        ..+++.. +......++++||++++ +++++++|.+++..-..+
T Consensus       111 ~~~vi~l~~s~e~l~~RL~~R~~~~~~~--------i~~rl~r-~~~~~~ad~~vi~~~~s-~ee~~~~i~~~l~~~~~~  180 (186)
T PRK10078        111 ALLPVCLQVSPEILRQRLENRGRENASE--------INARLAR-AARYQPQDCHTLNNDGS-LRQSVDTLLTLLHLSQKE  180 (186)
T ss_pred             CEEEEEEeCCHHHHHHHHHHhCCCCHHH--------HHHHHHH-hhhhccCCEEEEeCCCC-HHHHHHHHHHHHhhcCcc
Confidence            4568999999999999999887543221        1122211 11111234688997776 999999999999888776


Q ss_pred             cc
Q psy16563        256 KH  257 (259)
Q Consensus       256 ~~  257 (259)
                      +|
T Consensus       181 ~~  182 (186)
T PRK10078        181 KH  182 (186)
T ss_pred             cc
Confidence            66

>PRK04040 adenylate kinase; Provisional

Probab=99.44  E-value=4.8e-12  Score=102.86  Aligned_cols=170  Identities=18%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh--hcccccCCCCchHHHHHHhcccc------c---hHHHHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL--KASLKSTPPSSIMSLREKFDAHD------S---LLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~--~~~~~~~p~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      ++|+|+|++||||||+++.|++.+  +..++..    ++.+++.....+      +   +........+ ......+...
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~----g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~-~~a~~~i~~~   77 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF----GDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQ-REAAERIAEM   77 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec----chHHHHHHHHcCCCCCHHHHhhCChhhhHHHH-HHHHHHHHHh
Confidence            469999999999999999999999  4544432    112222111111      0   0000000111 1223334443


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhh---ccCCchHHH
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR---RKNFTLEEN  204 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~---R~~~~~~~~  204 (259)
                      ..+..||+|.+..-.      +  ..|+-..+|       .|......||.+|+|.+||++..+|...   |++......
T Consensus        78 ~~~~~~~~~~h~~i~------~--~~g~~~~~~-------~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e  142 (188)
T PRK04040         78 AGEGPVIVDTHATIK------T--PAGYLPGLP-------EWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEE  142 (188)
T ss_pred             hcCCCEEEeeeeeec------c--CCCCcCCCC-------HHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHH
Confidence            345668888653210      0  111101111       1111234699999999999999999874   433221122


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC-eEEEeCCCCCHhhHHHHHHHHH
Q psy16563        205 ELKKNAKFRELLTTIYRNMNNPE-LVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~~~~-~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ..+......+.....|......+ .+++|.++. +++.++++.++|
T Consensus       143 ~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~-~e~a~~~i~~ii  187 (188)
T PRK04040        143 DIEEHQEMNRAAAMAYAVLTGATVKIVENREGL-LEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHh
Confidence            11111111112122233333334 455566666 999999998876

>PLN02842 nucleotide kinase

Probab=99.44  E-value=3.9e-12  Score=116.21  Aligned_cols=161  Identities=16%  Similarity=0.211  Sum_probs=94.1

Q ss_pred             EEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HhCCC
Q psy16563         63 FEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DLQKQ  131 (259)
Q Consensus        63 ~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~  131 (259)
                      |+|++||||||+++.|+++++..++..        +..+  +..+++.+....-.....+.    ..+.+.+.. .....
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~----~ll~drl~~~~~~~~   77 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVI----AMVTGRLSREDAKEK   77 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHH----HHHHHHHhCccccCC
Confidence            789999999999999999999877642        1111  23444444332111111111    122233322 11233


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-C-----------
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F-----------  199 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~-----------  199 (259)
                      .+|+|+|+.+....                  ..+..   ....||++|+|++|++++++|+.+|.- .           
T Consensus        78 G~ILDGfPRt~~Qa------------------~~Le~---~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~  136 (505)
T PLN02842         78 GWLLDGYPRSFAQA------------------QSLEK---LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNF  136 (505)
T ss_pred             cEEEeCCCCcHHHH------------------HHHHh---cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccC
Confidence            46779887653211                  11111   135599999999999999999988741 0           


Q ss_pred             ------------chHHHHHHHHHHHHHHHHHHHHhcC------CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        200 ------------TLEENELKKNAKFRELLTTIYRNMN------NP-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       200 ------------~~~~~~~e~~~~~~~~~~~~y~~~~------~~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                                  .+.++    ..+-.++....|.+..      .+ .+..||++.+ +++++++|.+.|.+..
T Consensus       137 pP~~~~~~~rL~~R~DD----~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs-~EeVfeeI~~iL~~~L  204 (505)
T PLN02842        137 PPESEEIKARLITRPDD----TEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRP-KEVVFEEISSLLSQIQ  204 (505)
T ss_pred             CCCccccccccccCCCC----CHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCC-HHHHHHHHHHHHHHHH
Confidence                        01111    1222233333344331      12 3788999998 9999999999997653

>KOG4235|consensus

Probab=99.44  E-value=2.2e-12  Score=102.40  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc--ccCCCCch-----H--HHHHHhccccchHHHHHHHHHHHHHHHHHHHHh---
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL--KSTPPSSI-----M--SLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL---  128 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~--~~~p~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l---  128 (259)
                      ..|+|.+|+||||..+.+........  +.+|...+     .  .+.++++++|   .++-|.++.|.....+...+   
T Consensus        25 ~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW~nV~~~~~n~L~~mY~ep---~Rws~tfQtYv~ltrL~~~~~p~  101 (244)
T KOG4235|consen   25 SIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKWQNVQGANANLLDMMYREP---ARWSYTFQTYVFLTRLKVQLEPF  101 (244)
T ss_pred             EEEecccccchHHHHHHHHhccCccceecCchHHHHhccccccccHHHHHhhch---HhheehhhHHHHHHHHHHHhcCC
Confidence            34999999999999998877665443  56664311     1  2455556554   23445566666555555433   


Q ss_pred             CC--CcEEEcCCccchhhhhhhhh-hccccCCCCCcchhhhhc-c---c--ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        129 QK--QPVVMDRFWHSTSAYGMANE-LVKNSDLKLPDEDDDIYS-W---P--KDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       129 ~~--~~vi~Dr~~~s~~~~~~~~~-~~~~~~~~l~~~~~~l~~-~---~--~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      .+  .+-+++|.++|.. |+++.+ ...|   .+++....+++ |   .  .....+|.+|||.++|++|.+|+..|++.
T Consensus       102 ~~~kpvrimERSv~SdR-yiFv~nl~esg---~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~  177 (244)
T KOG4235|consen  102 NGRKPVRIMERSVYSDR-YIFVENLYESG---SMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRARE  177 (244)
T ss_pred             CCCCCeehhhhhhhhhH-HHHHHHHHhcC---CcccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhh
Confidence            23  4568888888753 222222 2221   23455444443 3   2  12357999999999999999999999754


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEeCCCC
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNM---------NNPELVFVDNSEK  236 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~---------~~~~~~vID~s~~  236 (259)
                      +.. .   ..++|++.++..++.|         .+.+++++|++..
T Consensus       178 EE~-g---ipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n  219 (244)
T KOG4235|consen  178 EEK-G---IPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHN  219 (244)
T ss_pred             hhc-C---CcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccc
Confidence            221 1   1466888888777776         2457899997754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.44  E-value=1.3e-11  Score=98.43  Aligned_cols=157  Identities=18%  Similarity=0.251  Sum_probs=85.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHH----HHHHHHHHHHHh-CCCc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLG----NYIAAQDIKQDL-QKQP  132 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~i~~~l-~~~~  132 (259)
                      ++|+|.|++||||||+++.|++.++..++...    ..+++.....+ .......+...    .......+.... .+..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   76 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAG----DIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN   76 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHH----HHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence            46999999999999999999999998766421    11222211110 00000000000    011222233333 4445


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKF  212 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~  212 (259)
                      +|++....                           .|.. ...+|++|||++|++++.+|+..|++.+..+.... ....
T Consensus        77 ~Vi~g~~~---------------------------~~~~-~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~-~~~~  127 (171)
T TIGR02173        77 VVLESRLA---------------------------GWIV-REYADVKIWLKAPLEVRARRIAKREGKSLTVARSE-TIER  127 (171)
T ss_pred             EEEEeccc---------------------------ceee-cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHH-HHHH
Confidence            56662110                           0000 12367899999999999999999976543332111 1111


Q ss_pred             HHHHHHHHHhc-----CCC-C-eEEEeCCCCCHhhHHHHHHHHH
Q psy16563        213 RELLTTIYRNM-----NNP-E-LVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       213 ~~~~~~~y~~~-----~~~-~-~~vID~s~~~~eev~~~I~~~l  249 (259)
                      -......|...     .++ . .++||++.-++++ ++.|.+.+
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       128 EESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             HHHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence            11112223222     122 2 4999999988999 98888765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.43  E-value=6.1e-12  Score=102.45  Aligned_cols=115  Identities=26%  Similarity=0.379  Sum_probs=66.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHHHHHHHHHh----CC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIAAQDIKQDL----QK  130 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~l----~~  130 (259)
                      |+|.|++||||||+++.|++.++..++...    +.+++.......+...  .++.    .........+.+.+    .+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~   77 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTG----DLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCK   77 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECc----HHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            899999999999999999999998776431    1122222111111000  0000    00112223333333    24


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ..+|+|.|+.+...                  ...+.........|+++|+|++|++++.+|+.+|+
T Consensus        78 ~~~vldg~Pr~~~q------------------~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          78 KGFILDGFPRTVDQ------------------AEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             CCEEEeCCCCCHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            67888877653211                  11111111112358999999999999999999986

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13946 shikimate kinase; Provisional

Probab=99.43  E-value=1.5e-11  Score=99.63  Aligned_cols=160  Identities=15%  Similarity=0.192  Sum_probs=89.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHh-CCCcE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l-~~~~v  133 (259)
                      .|+|+|++||||||+++.||+.+|..++....    .+.+.....  +.  .++...     +....+.+..++ .+..|
T Consensus        12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~----~~~~~~g~~--~~--e~~~~~ge~~~~~~e~~~l~~l~~~~~~V   83 (184)
T PRK13946         12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADT----EIERAARMT--IA--EIFAAYGEPEFRDLERRVIARLLKGGPLV   83 (184)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCeECcCH----HHHHHhCCC--HH--HHHHHHCHHHHHHHHHHHHHHHHhcCCeE
Confidence            49999999999999999999999998876531    111111111  00  011100     112233444444 34556


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNAK  211 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~~  211 (259)
                      |..+.               +. ...++....+..       -.++|||++|++++.+|+..|.....  .....+....
T Consensus        84 i~~gg---------------g~-~~~~~~r~~l~~-------~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~  140 (184)
T PRK13946         84 LATGG---------------GA-FMNEETRAAIAE-------KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLAR  140 (184)
T ss_pred             EECCC---------------CC-cCCHHHHHHHHc-------CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHH
Confidence            66531               11 111111222211       24689999999999999998864210  0110111122


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      ..+.....|..    ..++||++..+++++++.|.+.+..+..
T Consensus       141 ~~~~R~~~y~~----~dl~i~~~~~~~~~~~~~i~~~i~~~~~  179 (184)
T PRK13946        141 LMEERYPVYAE----ADLTVASRDVPKEVMADEVIEALAAYLE  179 (184)
T ss_pred             HHHHHHHHHHh----CCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            22333334432    2377888887799999999999987643

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.42  E-value=1.7e-11  Score=99.46  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|.||.||||||+++.||++||..++.
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yld   34 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLD   34 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeec
Confidence            679999999999999999999999988664

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.42  E-value=8.8e-12  Score=102.20  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|+++||++++.+|+++|++.++++..   ...-.|.-.+...+.+   .++|||++.++++...++.+++..+
T Consensus       129 ~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~---~ri~~Q~~~eek~~~a---D~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        129 LKKVIVIKADLETRIRRLMERDGKNRQQAV---AFINLQISDKEREKIA---DFVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHhCCCHHHHHHhC---CEEEECcCCCHHHHHHHHHHHHHHH
Confidence            588999999999999999999876544321   1111122222333333   4999999933999999999888765

>PRK13947 shikimate kinase; Provisional

Probab=99.42  E-value=1.4e-11  Score=98.49  Aligned_cols=157  Identities=19%  Similarity=0.264  Sum_probs=83.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVVM  135 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi~  135 (259)
                      |+|.|++||||||+++.||+.++..++..+..    .+..+.+.|....+   ..+.    ......+..+.. +..||.
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge---~~~~----~~e~~~~~~l~~~~~~vi~   76 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGE---VRFR----SEEKLLVKKLARLKNLVIA   76 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhCh---HHHH----HHHHHHHHHHhhcCCeEEE
Confidence            99999999999999999999999988764321    00111122221111   0111    111122333332 334442


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNAKFR  213 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~~~~  213 (259)
                      .               |++.... ++....+.       ..+++|||++|++++.+|+..|+....  .....+...+..
T Consensus        77 ~---------------g~g~vl~-~~~~~~l~-------~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~  133 (171)
T PRK13947         77 T---------------GGGVVLN-PENVVQLR-------KNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELL  133 (171)
T ss_pred             C---------------CCCCcCC-HHHHHHHH-------hCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHH
Confidence            2               1111000 11112221       124699999999999999987753210  011011112222


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHH-HHhc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVE-LIHN  251 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~-~l~~  251 (259)
                      +.....|..    ..++||+++.+++++++.|.+ .+..
T Consensus       134 ~~r~~~y~~----ad~~Idt~~~~~~~i~~~I~~~~~~~  168 (171)
T PRK13947        134 KEREPFYDF----ADYTIDTGDMTIDEVAEEIIKAYLKL  168 (171)
T ss_pred             HHHHHHHHh----cCEEEECCCCCHHHHHHHHHHHHHhh
Confidence            333333421    248899988789999999998 5543

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.42  E-value=1.3e-12  Score=105.10  Aligned_cols=161  Identities=17%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccch-HHHHHHHHHHHHHHHHHHHHh--CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL-LRRAYYSLGNYIAAQDIKQDL--QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l--~~~~vi~  135 (259)
                      .+|+|+|++||||||+++.|++++........--..+.+++.+.....- ......+    .....+...+  .|..||+
T Consensus         8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~g~~VI~   83 (176)
T PRK05541          8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMA----LKRAKLAKFLADQGMIVIV   83 (176)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHH----HHHHHHHHHHHhCCCEEEE
Confidence            3599999999999999999999997432111001234566655432211 0111101    1111122222  5778888


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |....    +                  ..+....+....+..+|||++|++++.+|+..+. ...  ...+........
T Consensus        84 ~~~~~----~------------------~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l-~~~--~~~~~~~~~~~~  138 (176)
T PRK05541         84 TTISM----F------------------DEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGL-YTK--ALKGEIKNVVGV  138 (176)
T ss_pred             EeCCc----H------------------HHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhH-HHH--HHcCcccccccC
Confidence            73211    0                  0111111112335679999999999999975320 000  000001111111


Q ss_pred             HHHHHHhcCCCCeEEEeCCC-CCHhhHHHHHHHHHhc
Q psy16563        216 LTTIYRNMNNPELVFVDNSE-KSVHESSNDIVELIHN  251 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~-~~~eev~~~I~~~l~~  251 (259)
                      ....|.+   ...++||+++ .++++++++|.+.+..
T Consensus       139 ~~~~~~~---~Ad~vI~~~~~~~~~~~v~~i~~~l~~  172 (176)
T PRK05541        139 DIPFDEP---KADLVIDNSCRTSLDEKVDLILNKLKL  172 (176)
T ss_pred             CCcccCC---CCCEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            1222221   1368999986 4699999999888754

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.41  E-value=1e-11  Score=101.59  Aligned_cols=70  Identities=14%  Similarity=0.031  Sum_probs=46.7

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+||++||++++.+|+..|++.+.++..   .....+.....+..   ...++|+|+++ ++++..++.++++.+
T Consensus       122 ~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~---~ri~~Q~~~~~k~~---~aD~vI~N~~~-~~~l~~~v~~l~~~~  191 (196)
T PRK14732        122 CDATVTVDSDPEESILRTISRDGMKKEDVL---ARIASQLPITEKLK---RADYIVRNDGN-REGLKEECKILYSTL  191 (196)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHHcCCHHHHHH---hCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            589999999999999999999866543321   11111111111222   23488899887 999999998887653

>PRK01184 hypothetical protein; Provisional

Probab=99.41  E-value=1.8e-11  Score=99.11  Aligned_cols=162  Identities=15%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc--c----chHHHH--HHHH-HHHHHHHHHHHHh-
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH--D----SLLRRA--YYSL-GNYIAAQDIKQDL-  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~--~----~~~~~~--~~~~-~~~~~~~~i~~~l-  128 (259)
                      ++|+|+|++||||||+++ +++.+|..++..    .+.+++.+...  +    .+....  .... ........+.+.+ 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~----~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~   76 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM----GDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR   76 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh----hHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            469999999999999987 677788776643    23444443211  0    010000  0000 0011112222222 


Q ss_pred             --CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        129 --QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       129 --~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                        .+..||.|.+. ..                  .....+...+   ..+..+|+|+||++++.+|+..|+..+....  
T Consensus        77 ~~~~~~vvidg~r-~~------------------~e~~~~~~~~---~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~--  132 (184)
T PRK01184         77 EKGDEVVVIDGVR-GD------------------AEVEYFRKEF---PEDFILIAIHAPPEVRFERLKKRGRSDDPKS--  132 (184)
T ss_pred             hcCCCcEEEeCCC-CH------------------HHHHHHHHhC---CcccEEEEEECCHHHHHHHHHHcCCCCChhh--
Confidence              25677887541 10                  0111111111   2356799999999999999999874321111  


Q ss_pred             HHHHHHHHHHHHH----HHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        207 KKNAKFRELLTTI----YRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       207 e~~~~~~~~~~~~----y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                        ...+..+....    ..+......++||++++ ++++.+++.+++..+
T Consensus       133 --~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~-~~~l~~~v~~~~~~~  179 (184)
T PRK01184        133 --WEELEERDERELSWGIGEVIALADYMIVNDST-LEEFRARVRKLLERI  179 (184)
T ss_pred             --HHHHHHHHHHHhccCHHHHHHhcCEEEeCCCC-HHHHHHHHHHHHHHH
Confidence              01111222111    00111223488888776 999999999988754

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.40  E-value=9.3e-12  Score=116.51  Aligned_cols=165  Identities=17%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~  132 (259)
                      .+.|+|.|.+||||||+++.||+.++.+++.....    .+..+.+.|.+.++   ..|    +....+.++..+. ...
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge---~~F----R~~E~~~l~~~~~~~~~   78 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGE---PAF----REVEADVVADMLEDFDG   78 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHH---HHH----HHHHHHHHHHHHhcCCe
Confidence            44599999999999999999999999998865321    01122233322211   111    1222233444332 333


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HHHHHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELKKNAK  211 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e~~~~  211 (259)
                      ||.               .|+|. +.-++....+..|.+..   ..+|||++|++++.+|+..+....-. ....+...+
T Consensus        79 VIs---------------~GGG~-v~~~~n~~~L~~~~~~~---g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~  139 (542)
T PRK14021         79 IFS---------------LGGGA-PMTPSTQHALASYIAHG---GRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKK  139 (542)
T ss_pred             EEE---------------CCCch-hCCHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHH
Confidence            442               15554 22233344443343322   36999999999999999754311000 011122345


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .+++....|++.++   ++||+++.++++++++|.+.+..
T Consensus       140 l~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        140 LFKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             HHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence            55666777876654   89999998899999999998865

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.38  E-value=2.4e-11  Score=102.24  Aligned_cols=70  Identities=16%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC--CCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS--EKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s--~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|+++||++++.+|+.+|++.+..+..   .+...+...+.+.   ....++|+|+  ++ +++..+++.+++..+
T Consensus       137 ~D~iv~V~a~~e~ri~RL~~R~g~s~eea~---~Ri~~Q~~~~ek~---~~aD~VI~N~~~g~-~~~L~~~v~~~~~~~  208 (244)
T PTZ00451        137 VSASVVVSCSEERQIERLRKRNGFSKEEAL---QRIGSQMPLEEKR---RLADYIIENDSADD-LDELRGSVCDCVAWM  208 (244)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCCCHHHHH---HHHHhCCCHHHHH---HhCCEEEECCCCCC-HHHHHHHHHHHHHHH
Confidence            589999999999999999999765543321   1111111111111   2234788888  76 999999999877553

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=4.6e-12  Score=96.51  Aligned_cols=150  Identities=18%  Similarity=0.294  Sum_probs=86.6

Q ss_pred             EcCCCCcHHHHHHHHHHHhhccccc----CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCC
Q psy16563         64 EGLDGCGKSHTSQTVAKKLKASLKS----TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRF  138 (259)
Q Consensus        64 ~g~~g~gkst~~~~l~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~  138 (259)
                      .|.+||||||++..||+.++..++.    +|+.++.++..-..-+..  .++-+..   .+...+.... ++..+|.-  
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~Dd--DR~pWL~---~l~~~~~~~~~~~~~~vi~--   73 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDD--DRWPWLE---ALGDAAASLAQKNKHVVIA--   73 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcc--hhhHHHH---HHHHHHHHhhcCCCceEEe--
Confidence            4899999999999999999998874    343344443321110100  1111111   1111222222 23323321  


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT  217 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~  217 (259)
                       ||.+..                   ...+.++. ..|+ .+|||+.+.+++.+|+..|.+.-....          .+.
T Consensus        74 -CSALKr-------------------~YRD~LR~-~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~----------ll~  122 (161)
T COG3265          74 -CSALKR-------------------SYRDLLRE-ANPGLRFVYLDGDFDLILERMKARKGHFMPAS----------LLD  122 (161)
T ss_pred             -cHHHHH-------------------HHHHHHhc-cCCCeEEEEecCCHHHHHHHHHhcccCCCCHH----------HHH
Confidence             222111                   11111111 1133 489999999999999999987754433          233


Q ss_pred             HHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        218 TIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       218 ~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..|..+.    ++.+++||.+.+ ++++++++.++|...
T Consensus       123 SQfa~LE~P~~de~vi~idi~~~-~e~vv~~~~~~l~~~  160 (161)
T COG3265         123 SQFATLEEPGADEDVLTIDIDQP-PEEVVAQALAWLKEG  160 (161)
T ss_pred             HHHHHhcCCCCCCCEEEeeCCCC-HHHHHHHHHHHHhcc
Confidence            4444443    345899999998 999999999998753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.37  E-value=1.4e-11  Score=99.00  Aligned_cols=161  Identities=25%  Similarity=0.323  Sum_probs=92.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHH----HHHHHH----HHHHHHHhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYS----LGNYIA----AQDIKQDLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~----~~~i~~~l~  129 (259)
                      .|+|.|+|||||||+|+.|+++++..+++.    +..++.......++...  .+..    +..+..    ...+...-.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlst----gd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~   77 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT----GDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC   77 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcH----hHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc
Confidence            489999999999999999999999888753    22223222222111110  0000    001112    222222211


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccccc-CCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD-LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ...+|+|.|+-....+.                  .+...+.. ...+|.++.++++.++...|+..|..  +.++    
T Consensus        78 ~~~~I~dg~PR~~~qa~------------------~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--r~dd----  133 (178)
T COG0563          78 KAGFILDGFPRTLCQAR------------------ALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--REDD----  133 (178)
T ss_pred             cCeEEEeCCCCcHHHHH------------------HHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--cccC----
Confidence            12799998876543222                  11111111 24689999999999999999999852  1111    


Q ss_pred             HHHHHHHHHHHHHhcCCC--Ce--EEEeCCCCCHhhHHHHHHHHH
Q psy16563        209 NAKFRELLTTIYRNMNNP--EL--VFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~--~~--~vID~s~~~~eev~~~I~~~l  249 (259)
                      ..+...+....|.+...|  .+  +.||+.++ ++++.+++.+.+
T Consensus       134 ~~~~~~~R~~~y~~~~~pli~~y~~~id~~~~-i~~v~~~i~~~l  177 (178)
T COG0563         134 NEETVKKRLKVYHEQTAPLIEYYSVTIDGSGE-IEEVLADILKAL  177 (178)
T ss_pred             CHHHHHHHHHHHHhcccchhhhheeeccCCCC-HHHHHHHHHHhh
Confidence            112233344445544322  12  56899998 999999998765

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.37  E-value=2.5e-11  Score=97.75  Aligned_cols=147  Identities=24%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCCc-hHHHHHHhccc-----cchHH----HHHHHH--HH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPSS-IMSLREKFDAH-----DSLLR----RAYYSL--GN  117 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~~-~~~~~~~~~~~-----~~~~~----~~~~~~--~~  117 (259)
                      ++|+|+|..||||||+++.|++ +|..++.         .|+.. ...+.+.|+.+     +.+.+    ...|..  .+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4699999999999999999999 8877542         34443 35666666542     22222    112211  12


Q ss_pred             HHHHHHHHHH--------h----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecC
Q psy16563        118 YIAAQDIKQD--------L----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS  185 (259)
Q Consensus       118 ~~~~~~i~~~--------l----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~  185 (259)
                      ..+.+.++|.        +    ....++.|-                      |-.++.  .|.   ...|.+|+++||
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~----------------------pLL~E~--~~~---~~~D~vi~V~a~  132 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI----------------------PLLFES--GLE---KLCDEVIVVYAP  132 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-----------------------TTTTTT--TGG---GGSSEEEEEE--
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc----------------------chhhhh--hHh---hhhceEEEEECC
Confidence            2233333332        1    124555551                      000111  011   125889999999


Q ss_pred             HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhh
Q psy16563        186 EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE  240 (259)
Q Consensus       186 ~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~ee  240 (259)
                      ++++.+|+.+|++.+.++..   ...-.|.-.+...+.+   .++|||+++ +++
T Consensus       133 ~e~ri~Rl~~R~~~~~~~~~---~ri~~Q~~~~~k~~~a---d~vI~N~g~-~~~  180 (180)
T PF01121_consen  133 EEIRIKRLMERDGLSEEEAE---ARIASQMPDEEKRKRA---DFVIDNNGS-LEE  180 (180)
T ss_dssp             HHHHHHHHHHHHTSTHHHHH---HHHHTS--HHHHHHH----SEEEE-SSH-HH-
T ss_pred             HHHHHHHHHhhCCCcHHHHH---HHHHhCCCHHHHHHhC---CEEEECCCC-CCC
Confidence            99999999999876654332   1111122222222223   499999987 653

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.37  E-value=3.7e-11  Score=98.63  Aligned_cols=71  Identities=18%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .+|.+||++||++++.+|+..|++.+.++..     .....-....... ....++||++++ ++++.+++..+++.+
T Consensus       125 ~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~-----~ri~~Q~~~~~k~-~~ad~vI~N~g~-~e~l~~~v~~~~~~~  195 (200)
T PRK14734        125 KMDLVVVVDVDVEERVRRLVEKRGLDEDDAR-----RRIAAQIPDDVRL-KAADIVVDNNGT-REQLLAQVDGLIAEI  195 (200)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcCCCCHHHHH-----HHHHhcCCHHHHH-HhCCEEEECcCC-HHHHHHHHHHHHHHH
Confidence            4699999999999999999998655433321     1111100111111 123488999998 999999999888654

>PRK06217 hypothetical protein; Validated

Probab=99.36  E-value=7.9e-12  Score=101.23  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-hCCCcEEEcCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD-LQKQPVVMDRF  138 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~vi~Dr~  138 (259)
                      .|+|.|++||||||+++.|++.++..++.....     ... .....+.....    .......+... ..+..+|+|.+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~-----~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vi~G~   72 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDY-----FWL-PTDPPFTTKRP----PEERLRLLLEDLRPREGWVLSGS   72 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce-----eec-cCCCCccccCC----HHHHHHHHHHHHhcCCCEEEEcc
Confidence            499999999999999999999999876643210     000 00000000000    01111222222 24556777744


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC--ch---HHHHH-HHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TL---EENEL-KKNAKF  212 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--~~---~~~~~-e~~~~~  212 (259)
                      +...                    ...+      ...+|.+|||++|++++.+|+.+|...  .+   ..... +...++
T Consensus        73 ~~~~--------------------~~~~------~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~  126 (183)
T PRK06217         73 ALGW--------------------GDPL------EPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEF  126 (183)
T ss_pred             HHHH--------------------HHHH------HhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHH
Confidence            3211                    0011      133788999999999999999988521  11   00000 011222


Q ss_pred             HHHH------------HHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        213 RELL------------TTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       213 ~~~~------------~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .+..            ...+..+.   ..+++++++..+ +++..++|.+.|+..+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~i~~~~~~~~~  182 (183)
T PRK06217        127 LEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLT-VEDLLDEVLDHLASAPG  182 (183)
T ss_pred             HHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCC-HHHHHHHHHHHHhcccc
Confidence            2221            11222221   235677777766 99999999999977653

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.36  E-value=5.4e-11  Score=97.27  Aligned_cols=71  Identities=24%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .|.+|.++||++++++|+++|++.+.+...   .....++-.  .+++ ....+++|+++. ++...+++.+.+..+.
T Consensus       124 ~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~---~~~~~Q~~~--~ek~-~~ad~vi~n~~~-i~~l~~~i~~~~~~~~  194 (201)
T COG0237         124 FDKVIVVYAPPEIRLERLMKRDGLDEEDAE---ARLASQRDL--EEKL-ALADVVIDNDGS-IENLLEQIEKLLKELL  194 (201)
T ss_pred             CCEEEEEECCHHHHHHHHHhcCCCCHHHHH---HHHHhcCCH--HHHH-hhcCChhhcCCC-HHHHHHHHHHHHHHHH
Confidence            678999999999999999999965543322   111212111  1112 223488999998 8999999999887764

>PLN02199 shikimate kinase

Probab=99.35  E-value=3.2e-11  Score=103.09  Aligned_cols=158  Identities=16%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC-----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVV  134 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi  134 (259)
                      |+|.|.+||||||+++.||+.++..++..+..     .+..+.++|...++   ..|    +....+.+..+.. ...||
T Consensus       105 I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE---~~F----R~~E~e~L~~L~~~~~~VI  177 (303)
T PLN02199        105 MYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGE---NFF----RGKETDALKKLSSRYQVVV  177 (303)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCH---HHH----HHHHHHHHHHHHhcCCEEE
Confidence            99999999999999999999999988754210     00111112221110   011    1122333444443 33344


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH------HHH---
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE------ENE---  205 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~------~~~---  205 (259)
                      .-               |+|. +.-++....+.        -..+|||++|++++.+|+.+.+...++      ...   
T Consensus       178 St---------------GGG~-V~~~~n~~~L~--------~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~  233 (303)
T PLN02199        178 ST---------------GGGA-VIRPINWKYMH--------KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSV  233 (303)
T ss_pred             EC---------------CCcc-cCCHHHHHHHh--------CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhh
Confidence            21               5554 22122222221        246999999999999999852211110      000   


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCCeEEEe------------CCCCCHhhHHHHHHHHHhccc
Q psy16563        206 -LKKNAKFRELLTTIYRNMNNPELVFVD------------NSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       206 -~e~~~~~~~~~~~~y~~~~~~~~~vID------------~s~~~~eev~~~I~~~l~~~~  253 (259)
                       .+.....++.....|.+ +   .++||            +++.++++++.+|.+.+..+.
T Consensus       234 ~~~~L~~L~~~R~plY~~-A---d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l  290 (303)
T PLN02199        234 AFKRLSAIWDERGEAYTN-A---NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL  290 (303)
T ss_pred             HHHHHHHHHHHHHHHHHh-C---CEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence             11223445555666655 3   37788            777789999999999997764

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.35  E-value=2.3e-11  Score=96.21  Aligned_cols=150  Identities=18%  Similarity=0.244  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHhCC-CcEEEcCCcc
Q psy16563         67 DGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDLQK-QPVVMDRFWH  140 (259)
Q Consensus        67 ~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~~-~~vi~Dr~~~  140 (259)
                      +||||||+++.||+.|+.+++...    ..+.+.++    .....++...     +....+.+...+.. ..||.=    
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D----~~i~~~~g----~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~----   68 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLD----DEIEERTG----MSISEIFAEEGEEAFRELESEALRELLKENNCVIAC----   68 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHH----HHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE----
T ss_pred             CCCcHHHHHHHHHHHhCCCccccC----HHHHHHhC----CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeC----
Confidence            699999999999999999987531    11222222    1111222222     12233344555543 333331    


Q ss_pred             chhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH--HHHHHHHHHHHHHHHH
Q psy16563        141 STSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTT  218 (259)
Q Consensus       141 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~--~~~~e~~~~~~~~~~~  218 (259)
                                 |+|. ..-++....+.       ....+|||++|++++.+|+..++.....  ....+.....+.+...
T Consensus        69 -----------GGG~-~~~~~~~~~L~-------~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~  129 (158)
T PF01202_consen   69 -----------GGGI-VLKEENRELLK-------ENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREP  129 (158)
T ss_dssp             ------------TTG-GGSHHHHHHHH-------HHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCC-cCcHHHHHHHH-------hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence                       3333 11122222222       2346999999999999999887651000  0110112223335667


Q ss_pred             HHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        219 IYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       219 ~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .|.+.+.   ++||++..++++++++|.+.|+
T Consensus       130 ~Y~~~a~---~~v~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  130 LYEQAAD---IVVDTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             HHHHHSS---EEEETSSCHHHHHHHHHHHHH-
T ss_pred             HHHhcCe---EEEeCCCCCHHHHHHHHHHHhC
Confidence            7877654   8999999866999999998874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PLN02422 dephospho-CoA kinase

Probab=99.34  E-value=9.4e-11  Score=97.82  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH--hcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR--NMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~--~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|+++||++++.+|+.+|++.+.++..        .++.....  .......++|+|+++ +++...++.++++.+
T Consensus       126 ~D~vI~V~a~~e~ri~RL~~R~g~s~eea~--------~Ri~~Q~~~eek~~~AD~VI~N~gs-~e~L~~qv~~ll~~l  195 (232)
T PLN02422        126 TKPVVVVWVDPETQLERLMARDGLSEEQAR--------NRINAQMPLDWKRSKADIVIDNSGS-LEDLKQQFQKVLEKI  195 (232)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHH--------HHHHHcCChhHHHhhCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            589999999999999999999865543321        11111111  111234589999997 999999999888765

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.34  E-value=9.9e-11  Score=97.90  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccch--------------HHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL--------------LRRAYYSLGNYIAAQDI  124 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~i  124 (259)
                      +.|+|.|++||||||+|+.|++.++..+++.    ++.+++.......+              ......    ....+.+
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~----gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~----~lv~~~l   78 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM----GNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVI----AIVKDEI   78 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC----ChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHH----HHHHHHH
Confidence            3499999999999999999999999887754    22333333221111              111110    1222233


Q ss_pred             HHHh--CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        125 KQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       125 ~~~l--~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ....  ....+++|.|+.+...                  ...+..    ...|+++|+|++|.+++++|+..|.
T Consensus        79 ~~~~~~~~~g~iLDGfPRt~~Q------------------a~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         79 AKVTDDCFKGFILDGFPRNLKQ------------------CKELGK----ITNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             HhhccccCceEEEecCCCCHHH------------------HHHHHh----cCCCCEEEEEeCCHHHHHHHHHcCc
Confidence            3321  2466888877654211                  111211    1358999999999999999999884

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.33  E-value=1e-10  Score=96.65  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +|.+|+++||++++.+|+.+|++.+.++.        .+++...+...  .....++|+|+++ ++++.+++.++++.+
T Consensus       134 ~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~--------~~Ri~~q~~~~~~~~~ad~vI~N~g~-~e~l~~~i~~~~~~~  203 (208)
T PRK14731        134 LDFIVVVAADTELRLERAVQRGMGSREEI--------RRRIAAQWPQEKLIERADYVIYNNGT-LDELKAQTEQLYQVL  203 (208)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCCCHHHH--------HHHHHHcCChHHHHHhCCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            68999999999999999999986543321        11221111110  0113488899987 999999999888764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.33  E-value=3e-11  Score=99.82  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             CCCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEeCCCC---CHhhHHH
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNAKFRELLTTIYRNMN----NPELVFVDNSEK---SVHESSN  243 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~~~~~~~~~~y~~~~----~~~~~vID~s~~---~~eev~~  243 (259)
                      ..|++|||++|++++++|+..|+    +.+.++.    ...+.......|.++-    ....++|++++.   +++++.+
T Consensus       125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~----~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~  200 (209)
T PRK05480        125 LMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESV----INQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKA  200 (209)
T ss_pred             hhceeEEEeCChhHHHHHHHhhcchhcCCCHHHH----HHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHH
Confidence            36899999999999999998886    2332221    1223344444554442    234688886652   3777777


Q ss_pred             HHHHHHh
Q psy16563        244 DIVELIH  250 (259)
Q Consensus       244 ~I~~~l~  250 (259)
                      +|..++.
T Consensus       201 ~i~~~~~  207 (209)
T PRK05480        201 KIRQLLE  207 (209)
T ss_pred             HHHHHhh
Confidence            7776654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.32  E-value=2.7e-11  Score=111.51  Aligned_cols=75  Identities=20%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             CCCEEEEEecCHHHHHHHHhhc----cCCchHHHHHHHH-HHHHHHH-HHHHH---hcCC-CCeEEEeCCCCCHhhHHHH
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRR----KNFTLEENELKKN-AKFRELL-TTIYR---NMNN-PELVFVDNSEKSVHESSND  244 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R----~~~~~~~~~~e~~-~~~~~~~-~~~y~---~~~~-~~~~vID~s~~~~eev~~~  244 (259)
                      ..|+.|||+||++++.+|...+    +-....   .+.. ..+.+|- .+..+   +++. ...++||+++.+++++++.
T Consensus       420 ~AdlKIfL~As~evRa~RR~~~l~~Rpll~~~---~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~  496 (512)
T PRK13477        420 DAELKIFLTASVEERARRRALDLQAQGFPVID---LEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDK  496 (512)
T ss_pred             CCCEEEEEECCHHHHHHHHHhhhhhCCCccCC---HHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHH
Confidence            3579999999999999996544    321110   1111 1122221 11111   1222 2469999999889999999


Q ss_pred             HHHHHhcc
Q psy16563        245 IVELIHNL  252 (259)
Q Consensus       245 I~~~l~~~  252 (259)
                      |.+.+...
T Consensus       497 Il~~i~~~  504 (512)
T PRK13477        497 IIDLYRDR  504 (512)
T ss_pred             HHHHHHHh
Confidence            99999763

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.31  E-value=2.9e-11  Score=97.44  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=43.9

Q ss_pred             CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ..+|||++|++++.+|+..|++.+...  .   ...+.+ ...|.. ....+++|+++.+ ++++.++|.+++.+
T Consensus       112 ~~~i~l~~~~~~~~~Rl~~R~~~~~~~--~---~~rl~~-~~~~~~-~~~~~~vi~~~~~-~ee~~~~i~~~l~~  178 (179)
T TIGR02322       112 LLVVNITASPDVLAQRLAARGRESREE--I---EERLAR-SARFAA-APADVTTIDNSGS-LEVAGETLLRLLRK  178 (179)
T ss_pred             cEEEEEECCHHHHHHHHHHcCCCCHHH--H---HHHHHH-Hhhccc-ccCCEEEEeCCCC-HHHHHHHHHHHHcc
Confidence            468999999999999999997644221  1   111111 111211 2234666888876 99999999998853

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08356 hypothetical protein; Provisional

Probab=99.30  E-value=1.7e-10  Score=94.41  Aligned_cols=75  Identities=23%  Similarity=0.343  Sum_probs=43.6

Q ss_pred             CEEEEEecCHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        177 DLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+|||++|++++.+|+.+|+..++... ..+............|...  .....++|+++++ ++++.++|.+++..+
T Consensus       116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~-~e~~~~~i~~~~~~~  193 (195)
T PRK08356        116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVIVNEGT-LEELRKKVEEILREL  193 (195)
T ss_pred             CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEEECCCC-HHHHHHHHHHHHHHh
Confidence            4699999999999999999985432110 1111111111111112111  1123366666665 999999999988754

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.30  E-value=1.3e-10  Score=91.07  Aligned_cols=145  Identities=21%  Similarity=0.311  Sum_probs=76.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHhC-CCcEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDLQ-KQPVV  134 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~-~~~vi  134 (259)
                      |+|.|++||||||+++.|++.++..++...     .+.......+ . . .++...     +....+.+..... +..||
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d-----~~~~~~~~~~-~-~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi   73 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD-----ELIEQRAGMS-I-P-EIFAEEGEEGFRELEREVLLLLLTKENAVI   73 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEch-----HHHHHHcCCC-H-H-HHHHHHCHHHHHHHHHHHHHHHhccCCcEE
Confidence            899999999999999999999998776432     2222211111 1 0 111100     0111122333333 34444


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH-HHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKNAKFR  213 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~~~~~  213 (259)
                      ...               ++. .  .....  ..+   .....++|||++|++++.+|+.+|+....... ..+.....+
T Consensus        74 ~~g---------------~~~-i--~~~~~--~~~---~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~  130 (154)
T cd00464          74 ATG---------------GGA-V--LREEN--RRL---LLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELL  130 (154)
T ss_pred             ECC---------------CCc-c--CcHHH--HHH---HHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHH
Confidence            331               111 0  00000  111   12246799999999999999998852111100 001134445


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHh
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVH  239 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~e  239 (259)
                      ++....|.++++   ++||+++.+++
T Consensus       131 ~~r~~~Y~~~ad---~~i~~~~~~~~  153 (154)
T cd00464         131 EEREPLYREVAD---LTIDTDELSPE  153 (154)
T ss_pred             HHHHHHHHHhCc---EEEECCCCCCC
Confidence            555666766544   99999987665

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.29  E-value=2.9e-11  Score=99.76  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CCEEEEEecC--HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        176 PDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       176 pdlvI~L~a~--~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      ||+++++.+|  .+++.+|+..|++.+.        .++.+++...|.++.   ...+++||++.+ ++++.++|.+.|.
T Consensus       123 pd~~~if~~pps~e~l~~Rl~~R~~~~~--------~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~-~e~v~~~i~~~l~  193 (206)
T PRK14738        123 PEAVFIFLAPPSMDELTRRLELRRTESP--------EELERRLATAPLELEQLPEFDYVVVNPEDR-LDEAVAQIMAIIS  193 (206)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHhcccCCCEEEECCCCC-HHHHHHHHHHHHH
Confidence            7877776665  5688999999975431        236677777776653   235788999887 9999999999997


Q ss_pred             cc
Q psy16563        251 NL  252 (259)
Q Consensus       251 ~~  252 (259)
                      ..
T Consensus       194 ~~  195 (206)
T PRK14738        194 AE  195 (206)
T ss_pred             HH
Confidence            64

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.26  E-value=2.1e-10  Score=88.98  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=59.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW  139 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~  139 (259)
                      +|+|.|++||||||+++.|++.++..++.........+...........     .. .....+.+.....+..+|+|...
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~-----~i-~~~l~~~~~~~~~~~~~Vidg~~   74 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIP-----EV-RKALDERQRELAKKPGIVLEGRD   74 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccH-----hH-HHHHHHHHHHHhhCCCEEEEeee
Confidence            4899999999999999999999998877553211111111111000000     00 11122223333344556676321


Q ss_pred             cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhc
Q psy16563        140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR  196 (259)
Q Consensus       140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R  196 (259)
                      ..                           |.. ....|++|||++|++++.+|+..|
T Consensus        75 ~~---------------------------~~~-~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          75 IG---------------------------TVV-FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             ee---------------------------eEE-cCCCCEEEEEECCHHHHHHHHHHH
Confidence            10                           000 123578999999999999999883

>TIGR00017 cmk cytidylate kinase

Probab=99.26  E-value=2.4e-10  Score=94.89  Aligned_cols=29  Identities=34%  Similarity=0.517  Sum_probs=26.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ++|+|.||+||||||+++.|++.++..++
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~   31 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL   31 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            56999999999999999999999997654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.26  E-value=4.1e-10  Score=90.58  Aligned_cols=71  Identities=8%  Similarity=0.129  Sum_probs=49.8

Q ss_pred             CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ..|..+|||++|++++.+|+.+|.+...       ..+.++.....++...  ..+++.||++.+ ++++.+++.+.+..
T Consensus        97 ~~~~~~v~l~a~~~~l~~Rl~~R~~~~~-------~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~-~~~~~~~~~~~~~~  168 (176)
T PRK09825         97 SPNVHFLWLDGDYETILARMQRRAGHFM-------PPDLLQSQFDALERPCADEHDIARIDVNHD-IENVTEQCRQAVQA  168 (176)
T ss_pred             CCCEEEEEEeCCHHHHHHHHhcccCCCC-------CHHHHHHHHHHcCCCCCCcCCeEEEECCCC-HHHHHHHHHHHHHH
Confidence            3466799999999999999999975321       1223333333333332  235899999998 88899998888866


Q ss_pred             c
Q psy16563        252 L  252 (259)
Q Consensus       252 ~  252 (259)
                      .
T Consensus       169 ~  169 (176)
T PRK09825        169 F  169 (176)
T ss_pred             H
Confidence            4

>TIGR00152 dephospho-CoA kinase

Probab=99.25  E-value=3e-10  Score=92.36  Aligned_cols=64  Identities=27%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIV  246 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~  246 (259)
                      .|.+|++++|++++.+|+..|++.+..+..   .  ....-...+... ....++|+++++ +++..+++.
T Consensus       124 ~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~---~--r~~~q~~~~~~~-~~ad~vI~N~~~-~e~l~~~~~  187 (188)
T TIGR00152       124 CDRVIVVDVSPQLQLERLMQRDNLTEEEVQ---K--RLASQMDIEERL-ARADDVIDNSAT-LADLVKQLE  187 (188)
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHHH---H--HHHhcCCHHHHH-HhCCEEEECCCC-HHHHHHHHh
Confidence            688999999999999999999865433221   0  111101111111 123588899887 898888764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.25  E-value=2.1e-10  Score=89.87  Aligned_cols=111  Identities=22%  Similarity=0.315  Sum_probs=62.3

Q ss_pred             EEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHH----HHHHHHHHHHHHH----hCCCc
Q psy16563         63 FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYS----LGNYIAAQDIKQD----LQKQP  132 (259)
Q Consensus        63 ~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~----l~~~~  132 (259)
                      |.|||||||||+|+.|++.++..+++.    .+-+++.+..+..+....  ...    +......+.+...    .....
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~----~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g   76 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISV----GDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRG   76 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEH----HHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceech----HHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccce
Confidence            689999999999999999999887742    233344333222111100  000    0011222222222    23577


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhh
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSR  195 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~  195 (259)
                      +|+|.|+.+.....                  .+..+. .....|+.+|+|+||.+++.+|+..
T Consensus        77 ~ildGfPrt~~Qa~------------------~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   77 FILDGFPRTLEQAE------------------ALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             EEEESB-SSHHHHH------------------HHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eeeeeccccHHHHH------------------HHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            89998876532111                  111111 1345689999999999999999987

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.24  E-value=2.7e-10  Score=91.95  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      +|+|+|++||||||+++.|++ +|..++.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~   28 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVID   28 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEe
Confidence            489999999999999999999 7876543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>KOG3220|consensus

Probab=99.24  E-value=4e-10  Score=90.15  Aligned_cols=158  Identities=19%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCCc-hHHHHHHhccc-----cch----HHHHHHHH--HH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPSS-IMSLREKFDAH-----DSL----LRRAYYSL--GN  117 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~~-~~~~~~~~~~~-----~~~----~~~~~~~~--~~  117 (259)
                      .+|+++|.+||||||+++.+. .+|...+.         +|+.+ ...+.+.|+++     +.+    +.+.+|..  .+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            369999999999999999998 67877543         56644 47777777664     111    11222221  12


Q ss_pred             HHHHHH-------------HHHHhCCC-cEEEcCCccchhhhhhhhhhccccCCCCCcchhh-hhcccccCCCCCEEEEE
Q psy16563        118 YIAAQD-------------IKQDLQKQ-PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDD-IYSWPKDLMKPDLVIYL  182 (259)
Q Consensus       118 ~~~~~~-------------i~~~l~~~-~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~pdlvI~L  182 (259)
                      +.+...             ....+.|. .+|+|                      .|-.++. +..|      ...+|.+
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD----------------------iPLLFE~~~~~~------~~~tvvV  132 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD----------------------IPLLFEAKLLKI------CHKTVVV  132 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe----------------------chHHHHHhHHhh------eeeEEEE
Confidence            222222             22233554 45555                      1222222 1122      2448999


Q ss_pred             ecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        183 TVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       183 ~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .||.+++.+|+.+|++.++++.+   ++...+..-+.-.   ....++|||+++ +++..+++...+...
T Consensus       133 ~cd~~~Ql~Rl~~Rd~lse~dAe---~Rl~sQmp~~~k~---~~a~~Vi~Nng~-~~~l~~qv~~v~~~~  195 (225)
T KOG3220|consen  133 TCDEELQLERLVERDELSEEDAE---NRLQSQMPLEKKC---ELADVVIDNNGS-LEDLYEQVEKVLALL  195 (225)
T ss_pred             EECcHHHHHHHHHhccccHHHHH---HHHHhcCCHHHHH---HhhheeecCCCC-hHHHHHHHHHHHHHh
Confidence            99999999999999966544332   1111111111111   123489999998 888888888777543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.23  E-value=4.6e-11  Score=92.42  Aligned_cols=115  Identities=27%  Similarity=0.338  Sum_probs=69.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-cc-c---hHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HD-S---LLRRAYYSLGNYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~i~~~l-~~~~v  133 (259)
                      +|++.|++||||||+++.|++.++..++..     +.++..+.. .. .   ... .. ..-.......+...+ .|..+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~-----D~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~g~~~   73 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ-----DEIRRRLAGEDPPSPSDYIE-AE-ERAYQILNAAIRKALRNGNSV   73 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEH-----HHHHHHHCCSSSGCCCCCHH-HH-HHHHHHHHHHHHHHHHTT-EE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeH-----HHHHHHHcccccccchhHHH-HH-HHHHHHHHHHHHHHHHcCCCc
Confidence            589999999999999999999999666542     344443322 11 1   111 10 001123334444444 67888


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      |+|.......                  ....+..+......+..+|+|++|++++.+|+..|+..
T Consensus        74 vvd~~~~~~~------------------~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   74 VVDNTNLSRE------------------ERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE  121 (143)
T ss_dssp             EEESS--SHH------------------HHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred             eeccCcCCHH------------------HHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence            8885433221                  12222333333444667999999999999999999854

...

>KOG3347|consensus

Probab=99.22  E-value=1.4e-10  Score=88.50  Aligned_cols=155  Identities=18%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMD  136 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~D  136 (259)
                      .|-|.|+|.||+||||++..||+.++..++.....- -..+.+.+++.-..     +.++-..+.+.+.+.+.+...|.|
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~~Gg~IVD   81 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMIEGGNIVD   81 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHhcCCcEEe
Confidence            344999999999999999999999998877321000 00111111111000     011123445566676654556667


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-CchHHHH--HHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTLEENE--LKKNAKFR  213 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~~~~~--~e~~~~~~  213 (259)
                      -.-+..                +|+            ...|+++.|.||-+++.+|+..||= ......+  .+..-...
T Consensus        82 yHgCd~----------------Fpe------------rwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~  133 (176)
T KOG3347|consen   82 YHGCDF----------------FPE------------RWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVL  133 (176)
T ss_pred             ecccCc----------------cch------------hheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHH
Confidence            322211                111            1258899999999999999999982 2221111  12122333


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      +...+.|    .+. ++..-...+.++....|-+++.
T Consensus       134 eea~eSy----~~~-iV~eL~s~~~Eem~~ni~ri~~  165 (176)
T KOG3347|consen  134 EEARESY----SPK-IVVELQSETKEEMESNISRILN  165 (176)
T ss_pred             HHHHHHc----CCc-ceeecCcCCHHHHHHHHHHHHH
Confidence            4444434    333 4444433335777776666654

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.21  E-value=5.6e-10  Score=88.73  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=50.2

Q ss_pred             CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ..|-..|||+||++++.+|+.+|.+. .  .    ..+.++.....++....  +.+++||++.+ ++++++++...+.+
T Consensus        89 ~~~~~~v~l~a~~~~l~~Rl~~R~~~-~--a----~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~-~~~~~~~~~~~~~~  160 (163)
T PRK11545         89 NPNLSFIYLKGDFDVIESRLKARKGH-F--F----KTQMLVTQFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK  160 (163)
T ss_pred             CCCEEEEEEECCHHHHHHHHHhccCC-C--C----CHHHHHHHHHHcCCCCCCCCCEEEEeCCCC-HHHHHHHHHHHHHH
Confidence            34567999999999999999999752 1  1    12233333334444432  34889999997 99999999999876


Q ss_pred             c
Q psy16563        252 L  252 (259)
Q Consensus       252 ~  252 (259)
                      .
T Consensus       161 ~  161 (163)
T PRK11545        161 G  161 (163)
T ss_pred             h
Confidence            4

>KOG3354|consensus

Probab=99.20  E-value=8.6e-10  Score=84.73  Aligned_cols=162  Identities=22%  Similarity=0.321  Sum_probs=91.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccC----CCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-HhCCCcEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST----PPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DLQKQPVV  134 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~~vi  134 (259)
                      +|++.|++||||||++++|++.|+..++.-    |+.+.+++.+-+.-+..  .++-|..   .....+.. +..++.||
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~--DR~pWL~---~i~~~~~~~l~~~q~vV   88 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDD--DRWPWLK---KIAVELRKALASGQGVV   88 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcc--cccHHHH---HHHHHHHHHhhcCCeEE
Confidence            699999999999999999999999988753    33344444432211110  1111110   11111222 22566666


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCC---CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP---DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK  211 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~p---dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~  211 (259)
                      +-   ||.+.-. .|.+-.+   +++        .-+....|   -.+|+|.++.|++.+|+..|.+.-....       
T Consensus        89 lA---CSaLKk~-YRdILr~---sl~--------~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~-------  146 (191)
T KOG3354|consen   89 LA---CSALKKK-YRDILRH---SLK--------DGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPAD-------  146 (191)
T ss_pred             EE---hHHHHHH-HHHHHHh---hcc--------cCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHH-------
Confidence            63   2221111 1111100   000        00111122   2489999999999999999987654332       


Q ss_pred             HHHHHHHHHHhcC-----CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        212 FRELLTTIYRNMN-----NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       212 ~~~~~~~~y~~~~-----~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                         .++.++..+.     +.+++.||....++++++..|.+.+..
T Consensus       147 ---lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  147 ---LLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             ---HHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence               2333444442     225788998866699999999887753

>PRK08118 topology modulation protein; Reviewed

Probab=99.20  E-value=9e-11  Score=93.64  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW  139 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~  139 (259)
                      .|+|.|++||||||+|+.|++.++..++...     .   ++.... ..     ........+.++..+++..+|+|..+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD-----~---l~~~~~-w~-----~~~~~~~~~~~~~~~~~~~wVidG~~   68 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD-----A---LFWKPN-WE-----GVPKEEQITVQNELVKEDEWIIDGNY   68 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecc-----h---hhcccC-Cc-----CCCHHHHHHHHHHHhcCCCEEEeCCc
Confidence            4999999999999999999999998866431     1   111100 00     00011222233344455667888543


Q ss_pred             cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ..+..                    ..      +..+|.+|||++|.+++..|+.+|.
T Consensus        69 ~~~~~--------------------~~------l~~~d~vi~Ld~p~~~~~~R~~~R~  100 (167)
T PRK08118         69 GGTMD--------------------IR------LNAADTIIFLDIPRTICLYRAFKRR  100 (167)
T ss_pred             chHHH--------------------HH------HHhCCEEEEEeCCHHHHHHHHHHHH
Confidence            32210                    00      1248999999999999999998883

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.18  E-value=9.7e-10  Score=99.19  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|||++|++++.+|+..|.+.+..+..   .....+...+...+.   ..++||++++ ++++..++.++++.+
T Consensus       124 ~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~---~ri~~Q~~~e~k~~~---AD~vIdN~~s-~e~l~~~v~~~l~~~  193 (395)
T PRK03333        124 FHLVVVVDADVEVRVRRLVEQRGMAEADAR---ARIAAQASDEQRRAV---ADVWLDNSGT-PDELVEAVRALWADR  193 (395)
T ss_pred             CCEEEEEECCHHHHHHHHHhcCCCCHHHHH---HHHHhcCChHHHHHh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            588999999999999999986544433221   010111111112222   3588998887 999999999888654

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.18  E-value=7.5e-10  Score=106.22  Aligned_cols=79  Identities=16%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             CCCEEEEEecCHHHHHHHHhhc----cCCchHHHHHHHHHHHHHHHHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHH
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRR----KNFTLEENELKKNAKFRELLTTIYRNM---N-NPELVFVDNSEKSVHESSNDIV  246 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R----~~~~~~~~~~e~~~~~~~~~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~  246 (259)
                      ..++.|||+|+++++.+|..+.    +.....+..++ ...-++ ..+..+..   . .+..++||++..+++|+++.|.
T Consensus       573 ~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~-~~~~Rd-~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~  650 (661)
T PRK11860        573 DAALKVFLTASAEARAERRYKQLISKGISANIADLLA-DLEARD-ARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVL  650 (661)
T ss_pred             CCCeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHh-HHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHH
Confidence            3678999999999999997652    21111111100 111111 11111111   1 1247999999988999999999


Q ss_pred             HHHhccccc
Q psy16563        247 ELIHNLPMF  255 (259)
Q Consensus       247 ~~l~~~~~~  255 (259)
                      +.+++...|
T Consensus       651 ~~i~~~~~~  659 (661)
T PRK11860        651 DWWQERQPF  659 (661)
T ss_pred             HHHHhhCCC
Confidence            999875544

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=99.18  E-value=1.1e-11  Score=96.62  Aligned_cols=116  Identities=23%  Similarity=0.347  Sum_probs=77.3

Q ss_pred             CCCcEEEcCCccc-hhhhhhhhhhccccCCCCCcch----hhhhcc-cccCCC-CCEEEEEecCHHHHHHHHhhccCCch
Q psy16563        129 QKQPVVMDRFWHS-TSAYGMANELVKNSDLKLPDED----DDIYSW-PKDLMK-PDLVIYLTVSEAIRLQRLSRRKNFTL  201 (259)
Q Consensus       129 ~~~~vi~Dr~~~s-~~~~~~~~~~~~~~~~~l~~~~----~~l~~~-~~~~~~-pdlvI~L~a~~ev~~~Rl~~R~~~~~  201 (259)
                      .+..+|+||++.+ ...|.......|.+    ++..    ..++.+ ....+. ||++|||++||+++++||++||+...
T Consensus        18 ~~~~~i~eRsi~sd~~vF~~~~~~~g~l----~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E   93 (146)
T PF01712_consen   18 TKQNVIMERSIYSDDFVFAKMLFKSGYL----SKEEYDLYDKLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEE   93 (146)
T ss_dssp             SSSEEEEES-HHHHHHTHHHHHHHTTSS-----HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGG
T ss_pred             cCCCceecCCeeechHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchh
Confidence            5889999999998 55554331112212    2333    233333 244566 99999999999999999999996532


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        202 EENELKKNAKFRELLT-TIYRNMN----NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~-~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .    ....+|++++. +.|..+.    ..++++||++..++.+..+.+...++++
T Consensus        94 ~----~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~~~i  145 (146)
T PF01712_consen   94 K----NIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVINQI  145 (146)
T ss_dssp             T----TS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHHCCC
T ss_pred             c----CCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHHHhc
Confidence            1    11567999999 7999883    3468999999855888888888887654

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.9e-10  Score=88.95  Aligned_cols=158  Identities=21%  Similarity=0.283  Sum_probs=90.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc--------cccCCCCchHHHHHHhccccchHHH---HHHHHH------HHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS--------LKSTPPSSIMSLREKFDAHDSLLRR---AYYSLG------NYIAAQ  122 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~  122 (259)
                      +|++.||+|+||-|+...++..+...        ++..|...+.+--+-+.+. ++.+.   ..|++.      .|.+-.
T Consensus         7 lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~-eF~~~a~~g~FAlsWqAhGL~Ygip~   85 (192)
T COG3709           7 LIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEA-EFNTRAGQGAFALSWQAHGLSYGIPA   85 (192)
T ss_pred             EEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHH-HHHHHhhcCceeEEehhcCccccCch
Confidence            39999999999999999999988754        2344443221110000000 00000   011111      122233


Q ss_pred             HHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch
Q psy16563        123 DIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL  201 (259)
Q Consensus       123 ~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~  201 (259)
                      .|-.++ .|.+|+...+    .             -.+|+..... .       --+++.|.++|++..+|+..||++++
T Consensus        86 eId~wl~~G~vvl~NgS----R-------------a~Lp~arrry-~-------~Llvv~ita~p~VLaqRL~~RGREs~  140 (192)
T COG3709          86 EIDLWLAAGDVVLVNGS----R-------------AVLPQARRRY-P-------QLLVVCITASPEVLAQRLAERGRESR  140 (192)
T ss_pred             hHHHHHhCCCEEEEecc----H-------------hhhHHHHHhh-h-------cceeEEEecCHHHHHHHHHHhccCCH
Confidence            444445 4666666421    0             1122222111 1       12488999999999999999998765


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        202 EENELKKNAKFRELLTTIYR-NMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~~~y~-~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++.        ..++...-. .....++++||||+. ++...+.+.+.|.+-
T Consensus       141 eeI--------~aRL~R~a~~~~~~~dv~~idNsG~-l~~ag~~ll~~l~~~  183 (192)
T COG3709         141 EEI--------LARLARAARYTAGPGDVTTIDNSGE-LEDAGERLLALLHQD  183 (192)
T ss_pred             HHH--------HHHHHhhcccccCCCCeEEEcCCCc-HHHHHHHHHHHHHhh
Confidence            542        223221111 112456999999999 999999999998743

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.17  E-value=2.8e-10  Score=97.41  Aligned_cols=160  Identities=22%  Similarity=0.212  Sum_probs=78.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR  137 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr  137 (259)
                      |+|+|+|.|||||||+++.|++.+.......---+-+.+.  +..+. +.....-...+..+...++..+ +..+||+|.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd   78 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERALSKDTIVILDD   78 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEeC
Confidence            6899999999999999999999887532110000001111  11111 1000000001122333444444 578899984


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT  217 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~  217 (259)
                      -.     |.      +|       .++++++.++....+..+||++||.+.+.+|-..|+...+.      ..+.++.+.
T Consensus        79 ~n-----Yi------Kg-------~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~------~~e~i~~m~  134 (270)
T PF08433_consen   79 NN-----YI------KG-------MRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERY------PEETIDDMI  134 (270)
T ss_dssp             --------S------HH-------HHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-------HHHHHHHH
T ss_pred             Cc-----hH------HH-------HHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCC------CHHHHHHHH
Confidence            22     11      11       25677777777777889999999999999999999854322      123445555


Q ss_pred             HHHHhcC-----CCCeEEEeCC--CCCHhhHHHHH
Q psy16563        218 TIYRNMN-----NPELVFVDNS--EKSVHESSNDI  245 (259)
Q Consensus       218 ~~y~~~~-----~~~~~vID~s--~~~~eev~~~I  245 (259)
                      ..|+.-.     +.+.++|+++  ..+.+++++.+
T Consensus       135 ~RfE~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  135 QRFEEPDPKNRWDSPLFTIDSSDEELPLEEIWNAL  169 (270)
T ss_dssp             HH---TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred             HHhcCCCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence            5565432     2355777743  23356666665

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.17  E-value=1.8e-10  Score=90.48  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHh--CCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDL--QKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l--~~~~  132 (259)
                      ..+|.++|++||||||+|..|.+.|.......--.+++.+|..+..+-++.+     .++..-.++   +..++  .|.+
T Consensus        23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~-----edR~eniRRvaevAkll~daG~i   97 (197)
T COG0529          23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR-----EDRIENIRRVAEVAKLLADAGLI   97 (197)
T ss_pred             CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh-----HHHHHHHHHHHHHHHHHHHCCeE
Confidence            3469999999999999999999999877655433456677776665544322     122222222   22233  3555


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH------hhccCCchHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL------SRRKNFTLEENEL  206 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl------~~R~~~~~~~~~~  206 (259)
                      |+.- ++ |.  |...              ++........  ...+-||++||.++|.+|=      ++|.++       
T Consensus        98 viva-~I-SP--~r~~--------------R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~Ge-------  150 (197)
T COG0529          98 VIVA-FI-SP--YRED--------------RQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGE-------  150 (197)
T ss_pred             EEEE-ee-Cc--cHHH--------------HHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCC-------
Confidence            5553 21 11  1111              1111111111  1356899999999999982      111111       


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                         ...+--+..-|+.-. .+.+++|++..++++.++.|.+.|....
T Consensus       151 ---I~~fTGid~pYE~P~-~Pel~l~t~~~~vee~v~~i~~~l~~~~  193 (197)
T COG0529         151 ---IKNFTGIDSPYEAPE-NPELHLDTDRNSVEECVEQILDLLKERK  193 (197)
T ss_pred             ---CCCCcCCCCCCCCCC-CCeeEeccccCCHHHHHHHHHHHHHhcc
Confidence               001111222232221 2469999988789999999999997653

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.17  E-value=9e-10  Score=86.08  Aligned_cols=117  Identities=16%  Similarity=0.051  Sum_probs=62.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH-Hhcccc-chHHHHHHHHHHHHHHHHHHH-H-hCCCcEEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-KFDAHD-SLLRRAYYSLGNYIAAQDIKQ-D-LQKQPVVM  135 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~-~-l~~~~vi~  135 (259)
                      +|+|.|++||||||+++.|++.++..++....-....... .....+ .......+..   ........ . ..+..+|+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~vVi   77 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQ---ALTDALLAKLASAGEGVVV   77 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHH---HHHHHHHHHHHhCCCCEEE
Confidence            4899999999999999999999887766432111010000 111111 0000011110   11111111 2 25777888


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      |......                  ...+.+..++  ...+-.+|||++|++++.+|+.+|...
T Consensus        78 d~~~~~~------------------~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (150)
T cd02021          78 ACSALKR------------------IYRDILRGGA--ANPRVRFVHLDGPREVLAERLAARKGH  121 (150)
T ss_pred             EeccccH------------------HHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhcccC
Confidence            7433211                  0112222222  123556999999999999999999643

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.17  E-value=7.4e-10  Score=102.31  Aligned_cols=149  Identities=15%  Similarity=0.226  Sum_probs=79.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ-KQPVV  134 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~vi  134 (259)
                      .|+|.|++||||||+++.|++.++..++.....    .+..+.+.|....   ...+    +....+.++.... ...|+
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~G---e~~f----r~~E~~~l~~l~~~~~~Vi   74 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDG---EEYF----RLKEKELLRELVERDNVVV   74 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhh---hHHH----HHHHHHHHHHHhhcCCEEE
Confidence            499999999999999999999999888754210    0001111111111   0111    1112222333332 23333


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      ..               |+++ +.-++....+.        .+.+|||++|++++.+|+..|+++.-.. ..+...+..+
T Consensus        75 s~---------------Gggv-v~~~~~r~~l~--------~~~vI~L~as~e~l~~Rl~~~~RPLl~~-~~e~l~~L~~  129 (488)
T PRK13951         75 AT---------------GGGV-VIDPENRELLK--------KEKTLFLYAPPEVLMERVTTENRPLLRE-GKERIREIWE  129 (488)
T ss_pred             EC---------------CCcc-ccChHHHHHHh--------cCeEEEEECCHHHHHHHhccCCCCCccc-cHHHHHHHHH
Confidence            32               3332 10011122221        2458999999999999998765421111 0111223344


Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563        215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I  245 (259)
                      +....|.++     .+||+++.++++++++|
T Consensus       130 ~R~~lY~~~-----~~IDt~~~s~~e~~~~i  155 (488)
T PRK13951        130 RRKQFYTEF-----RGIDTSKLNEWETTALV  155 (488)
T ss_pred             HHHHHHhcc-----cEEECCCCCHHHHHHHH
Confidence            445556543     58999998787777666

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.16  E-value=3.4e-10  Score=98.58  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhcc-cc--c--hH-HHHHHHHHHHHHHHHHHHHh-CC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDA-HD--S--LL-RRAYYSLGNYIAAQDIKQDL-QK  130 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~-~~--~--~~-~~~~~~~~~~~~~~~i~~~l-~~  130 (259)
                      .+|++.|++||||||+|+.|++.+ +..++..     +.+++.... ..  .  +. ..... . .......+...+ .|
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~-----D~~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~g   75 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR-----DDLRQSLFGHGEWGEYKFTKEKEDL-V-TKAQEAAALAALKSG   75 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec-----cHHHHHhcCCCcccccccChHHHHH-H-HHHHHHHHHHHHHcC
Confidence            469999999999999999999999 5555532     334443321 11  0  00 00000 0 011122233333 57


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      ..+|+|.+..+....                  ..+..........-.+|||++|.+++.+|+..|++.
T Consensus        76 ~~vIid~~~~~~~~~------------------~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~  126 (300)
T PHA02530         76 KSVIISDTNLNPERR------------------RKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER  126 (300)
T ss_pred             CeEEEeCCCCCHHHH------------------HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC
Confidence            788888665432111                  111111111111223699999999999999999754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.14  E-value=4.4e-10  Score=92.13  Aligned_cols=74  Identities=11%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccccc
Q psy16563        178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPMFK  256 (259)
Q Consensus       178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~~~  256 (259)
                      ++|||++|++++.+|.. |+-...  ...+....+..... .|+.. ..+.++||++..++++++++|.+.+.....++
T Consensus       124 i~V~L~~~~e~~~~R~~-r~l~~~--~~~~~~~~l~~~r~-~Y~~p-~~ad~~Idt~~~~~~~vv~~Il~~l~~~~~~~  197 (198)
T PRK03846        124 IEVFVDTPLAICEARDP-KGLYKK--ARAGEIRNFTGIDS-VYEAP-ESPEIHLDTGEQLVTNLVEQLLDYLRQRDIIR  197 (198)
T ss_pred             EEEEEcCCHHHHHhcCc-hhHHHH--hhcCCccCcccccc-cCCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47999999999999932 210000  00000011111222 25422 11358999988779999999999998765443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.14  E-value=1.1e-10  Score=95.63  Aligned_cols=172  Identities=16%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc---ccCCCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL---KSTPPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~---~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  132 (259)
                      ..+|+|.|++||||||+++.|.+.++...   +.....  ..............+  ...-+++...+.+.+..+++|..
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~--d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINY--DHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCc--cChhhhcHHHHHHHHHHHHcCCc
Confidence            35799999999999999999999999652   221110  000000000000000  00113344455666777667777


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhccCC---chHHHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKK  208 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---~~~~~~~e~  208 (259)
                      |...-|-+.+-........-...++.+.++...+++ .+.  ...|+.|||++|.++|..|...|+-.   ...+..   
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr--~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~v---  160 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLR--DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESV---  160 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEecccccccHHHH--hhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHH---
Confidence            666655444322211000000111233444444443 222  23689999999999999998777521   112222   


Q ss_pred             HHHHHHHHHHHHHhcCCC----CeEEEeCCCC
Q psy16563        209 NAKFRELLTTIYRNMNNP----ELVFVDNSEK  236 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~----~~~vID~s~~  236 (259)
                      ...|...++..|+++-.|    ..++|...+.
T Consensus       161 i~qy~~~vkp~~~~fIeptk~~ADiiip~~~~  192 (218)
T COG0572         161 IEQYVKTVRPMYEQFIEPTKKYADIIIPSGGK  192 (218)
T ss_pred             HHHHHHhhChhhhhccCcccccceEEeecCCc
Confidence            233555666677766332    3567766653

>PRK07667 uridine kinase; Provisional

Probab=99.14  E-value=8.8e-10  Score=90.01  Aligned_cols=139  Identities=10%  Similarity=0.050  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH-HHHHhCCC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD-IKQDLQKQ  131 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l~~~  131 (259)
                      ..+|+|.|++||||||+++.|++.++...     ++.+..-.+....................+...+... +.++..+.
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~   96 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET   96 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence            35799999999999999999999986432     2222111111111111111110000011122222222 23333455


Q ss_pred             cEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        132 PVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      .+....|-..+....... ... ..++.+.++...+..-..  ...|.+|||+||++++++|+.+|++.
T Consensus        97 ~i~~P~~d~~~~~~~~~~~~~~-~~~vvIvEG~~l~~~~~~--~~~d~~v~V~~~~~~~~~R~~~r~~~  162 (193)
T PRK07667         97 KLTLPFYHDETDTCEMKKVQIP-IVGVIVIEGVFLQRKEWR--DFFHYMVYLDCPRETRFLRESEETQK  162 (193)
T ss_pred             eEEEeeeccccccccccceecC-CCCEEEEEehhhhhhhHH--hhceEEEEEECCHHHHHHHHhcccHh
Confidence            555554443322111000 000 001112222222221111  23699999999999999999998643

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.13  E-value=6.8e-10  Score=90.08  Aligned_cols=157  Identities=16%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCch------------HHHHHHhccccchHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSI------------MSLREKFDAHDSLLRRAYYSLGNYIA  120 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (259)
                      +.+|+|.||+||||||+++.|.+.+...     +...|+.++            +.+......+..+ ....|.-..|..
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~-e~~~~~g~~YGt   82 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFL-EWAEVHDNYYGT   82 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeE-EEEEECCeeecC
Confidence            4569999999999999999998876432     122222111            2233332222100 000000001111


Q ss_pred             -HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC--EEEEEecC-HHHHHHHHhh
Q psy16563        121 -AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD--LVIYLTVS-EAIRLQRLSR  195 (259)
Q Consensus       121 -~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd--lvI~L~a~-~ev~~~Rl~~  195 (259)
                       .+.+...+ +|..+|+|--+.                     +...+...     .|+  ++||+.+| .+++.+|+..
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~~~---------------------g~~~l~~~-----~~~~~~~Ifi~pps~e~l~~RL~~  136 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDIDVQ---------------------GAKIIKEK-----FPERIVTIFIEPPSEEEWEERLIH  136 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcCHH---------------------HHHHHHHh-----CCCCeEEEEEECCCHHHHHHHHHh
Confidence             12244444 578888872111                     11122211     133  58999985 7999999999


Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        196 RKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       196 R~~~~~~~~~~e~~~~~~~~~~~~y~~~--~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      |+..+..+.  +      +++..+..+.  .....++|+++ . +++..+++.++|..
T Consensus       137 R~~~s~e~i--~------~Rl~~~~~e~~~~~~~D~vI~N~-d-le~a~~ql~~ii~~  184 (186)
T PRK14737        137 RGTDSEESI--E------KRIENGIIELDEANEFDYKIIND-D-LEDAIADLEAIICG  184 (186)
T ss_pred             cCCCCHHHH--H------HHHHHHHHHHhhhccCCEEEECc-C-HHHHHHHHHHHHhc
Confidence            986543321  1      1111111111  12234777777 4 89999999988864

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.12  E-value=9.6e-10  Score=103.27  Aligned_cols=200  Identities=14%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             ccccccHHHHHHHHHh----hccCChHHHHHHH-HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563          8 FAQYPSLVSVLSILKS----AQYSSLPEVEELL-NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus         8 ~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..++-|-..+++.|..    |..=..|++.+++ ..|+..          ...+.  +|+|+|++||||||+++.|++.+
T Consensus       349 ~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r----------~~~g~--~Ivl~Gl~GSGKSTia~~La~~L  416 (568)
T PRK05537        349 TVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPR----------HKQGF--TVFFTGLSGAGKSTIAKALMVKL  416 (568)
T ss_pred             ceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccc----------cCCCe--EEEEECCCCChHHHHHHHHHHHh
Confidence            3577788999999988    3344556666555 555422          23333  59999999999999999999999


Q ss_pred             hc------ccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHH----HHHHHh-CCCcEEEcCCccchhhhhhhhhh
Q psy16563         83 KA------SLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQ----DIKQDL-QKQPVVMDRFWHSTSAYGMANEL  151 (259)
Q Consensus        83 ~~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~  151 (259)
                      +.      .++.     .+.+++.+..+..+...     .+.....    .-...+ .|..||+|...    .+...   
T Consensus       417 ~~~~g~~~~~lD-----~D~vr~~l~ge~~f~~~-----er~~~~~~l~~~a~~v~~~Gg~vI~~~~~----p~~~~---  479 (568)
T PRK05537        417 MEMRGRPVTLLD-----GDVVRKHLSSELGFSKE-----DRDLNILRIGFVASEITKNGGIAICAPIA----PYRAT---  479 (568)
T ss_pred             hhccCceEEEeC-----CcHHHHhccCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEEEEEeCC----chHHH---
Confidence            85      2332     23444433322222111     0111111    111122 58888888421    11110   


Q ss_pred             ccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q psy16563        152 VKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV  231 (259)
Q Consensus       152 ~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vI  231 (259)
                                 .......+.... .-.+|||++|++++.+|+.+ +-...  ...+....+...... |... ..+.++|
T Consensus       480 -----------R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr-~Ll~~--~~~~~i~~l~~~R~~-yy~p-~~Adl~I  542 (568)
T PRK05537        480 -----------RREVREMIEAYG-GFIEVHVATPLEVCEQRDRK-GLYAK--AREGKIKGFTGISDP-YEPP-ANPELVI  542 (568)
T ss_pred             -----------HHHHHHHHhhcC-CEEEEEEcCCHHHHHHhccc-ccccc--chhchhhcccccccc-ccCC-CCCcEEE
Confidence                       111111121111 12489999999999999732 21100  000000111111111 2211 1236999


Q ss_pred             eCCCCCHhhHHHHHHHHHhccc
Q psy16563        232 DNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       232 D~s~~~~eev~~~I~~~l~~~~  253 (259)
                      |+++.++++++++|.+.|....
T Consensus       543 Dt~~~s~~eiv~~Il~~L~~~g  564 (568)
T PRK05537        543 DTTNVTPDECAHKILLYLEEKG  564 (568)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcC
Confidence            9998779999999999987653

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.11  E-value=3.8e-09  Score=88.28  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=27.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|.|++||||||+++.|++.+|..++.
T Consensus         5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~   34 (225)
T PRK00023          5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD   34 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            569999999999999999999999977654

>PTZ00301 uridine kinase; Provisional

Probab=99.11  E-value=5.7e-10  Score=92.12  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-------cccCCC-----CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPP-----SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ  126 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-------~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  126 (259)
                      ++|+|.|++||||||+|+.|++.+...       .+....     ...........+   +  ....+++...+.+.+..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~---~--d~p~a~D~~~l~~~l~~   78 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTN---Y--DHPKSLEHDLLTTHLRE   78 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCC---C--CChhhhCHHHHHHHHHH
Confidence            579999999999999999998877421       111111     000000000000   0  00112333344555555


Q ss_pred             HhCCCcEEEcCCccchhhhhhh-hhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        127 DLQKQPVVMDRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       127 ~l~~~~vi~Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      +.+|..+-...|.+..-..... ..+. ..++.+.++.+.++. .+.  ...|+.|||++|.++++.|...|.
T Consensus        79 L~~g~~i~~P~yd~~~~~~~~~~~~i~-p~~ViIvEGi~~l~~~~l~--~l~D~~ifvd~~~d~~~~Rr~~Rd  148 (210)
T PTZ00301         79 LKSGKTVQIPQYDYVHHTRSDTAVTMT-PKSVLIVEGILLFTNAELR--NEMDCLIFVDTPLDICLIRRAKRD  148 (210)
T ss_pred             HHcCCcccCCCcccccCCcCCceEEeC-CCcEEEEechhhhCCHHHH--HhCCEEEEEeCChhHHHHHHHhhh
Confidence            4456555444444332111000 0000 011233455554422 122  236899999999999999998886

>PHA03136 thymidine kinase; Provisional

Probab=99.11  E-value=1.2e-09  Score=96.03  Aligned_cols=85  Identities=15%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             CcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHH
Q psy16563        131 QPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN  209 (259)
Q Consensus       131 ~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~  209 (259)
                      ..+++||...+.. .|......-|.+  . ......+..+....+.||++|||+++++++++||++|++..+  .   ..
T Consensus       149 ~~~i~DRhpisA~lcFp~~~~~lG~l--s-y~~l~~ll~~~~~~p~pD~IIyL~l~~e~~~~RI~kRgR~~E--~---I~  220 (378)
T PHA03136        149 ILFIIDRHPLAACLCFPAAQFLSGAL--E-FGDLIALISGIPDEPHGGNIVIMDLDECEHAERIIARGRPGE--A---ID  220 (378)
T ss_pred             eEEEeecCcchHhhcCCHHHHhcCCC--C-HHHHHHHHhhCcCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--C---CC
Confidence            4678899877643 232222111111  1 122333334556667899999999999999999999996532  1   14


Q ss_pred             HHHHHHHHHHHHhc
Q psy16563        210 AKFRELLTTIYRNM  223 (259)
Q Consensus       210 ~~~~~~~~~~y~~~  223 (259)
                      ..|++++.+.|..+
T Consensus       221 ~~YL~~L~~~Y~~~  234 (378)
T PHA03136        221 VRFLCALHNIYICF  234 (378)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56888888888765

>TIGR00235 udk uridine kinase

Probab=99.10  E-value=5e-10  Score=92.45  Aligned_cols=181  Identities=14%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc---cccCCCC--chHH--HHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPS--SIMS--LREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQ  131 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~---~~~~p~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  131 (259)
                      .+|+|.|++||||||+++.|+..++..   .+.....  ....  ..+.....  +..  ..+.+...+.+.+..+..|.
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTN--FDH--PDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCC--CCC--ccHhHHHHHHHHHHHHHCCC
Confidence            359999999999999999999988631   1211110  0000  01100000  000  00112223445555555666


Q ss_pred             cEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC----CchHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN----FTLEENEL  206 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~----~~~~~~~~  206 (259)
                      .+-...|.+.+....... ... ..+..+.++...++.- ......|++|||++|.+++++|+..|..    .+..+.  
T Consensus        83 ~v~~p~yd~~~~~~~~~~~~~~-~~~~vIieG~~~~~~~-~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~--  158 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPKETVHIE-PKDVVILEGIMPLFDE-RLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSV--  158 (207)
T ss_pred             CEecccceeecCCCCCceEEeC-CCCEEEEEehhhhchH-hHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHH--
Confidence            666555544321110000 000 0011122222222110 0012368999999999999999988752    122111  


Q ss_pred             HHHHHHHHHHHHHHHhcC----CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        207 KKNAKFRELLTTIYRNMN----NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~----~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                        ...+.......|...-    ....++|+++.. -+...+-+...+.
T Consensus       159 --~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~-~~~~~~~~~~~~~  203 (207)
T TIGR00235       159 --IDQYRKTVRPMYEQFVEPTKQYADLIIPEGGR-NEVAINVLDTKIK  203 (207)
T ss_pred             --HHHHHHhhhhhHHHhCcccccccEEEEcCCCC-chHHHHHHHHHHH
Confidence              1223333344443331    223588887665 5666665555443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.10  E-value=9e-10  Score=89.19  Aligned_cols=166  Identities=13%  Similarity=0.085  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMD  136 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~D  136 (259)
                      ..+|+|.|++||||||+++.|+..+........--..+.+++.+..+..+........ ...+.......+ .|..||.|
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~VI~d   96 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKEN-IRRIGEVAKLFVRNGIIVITS   96 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHH-HHHHHHHHHHHHcCCCEEEEe
Confidence            3459999999999999999999988532210000012344443322211111000000 001111122223 58889988


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~  216 (259)
                      -....    .              .....+.......  +..+|||++|.+++.+|-. ++-.  .....+....+ ...
T Consensus        97 ~~~~~----~--------------~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~-~~l~--~~~~~~~~~~l-~~~  152 (184)
T TIGR00455        97 FISPY----R--------------ADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDP-KGLY--KKARNGEIKGF-TGI  152 (184)
T ss_pred             cCCCC----H--------------HHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCc-hhHH--HHHhcCCccCc-ccc
Confidence            32111    0              0111222222211  4568999999999999932 1100  00000000001 112


Q ss_pred             HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ...|.+. ..+.++||++..++++++++|.+.|
T Consensus       153 ~~~y~~p-~~adl~Idt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       153 DSPYEAP-ENPEVVLDTDQNDREECVGQIIEKL  184 (184)
T ss_pred             cCCCCCC-CCCcEEEECCCCCHHHHHHHHHHhC
Confidence            2223221 2246999999877999999887653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.09  E-value=1.8e-09  Score=86.61  Aligned_cols=161  Identities=15%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchH--HHHHHHHHHHHHHHHHHHH-h-CCCcEEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLL--RRAYYSLGNYIAAQDIKQD-L-QKQPVVM  135 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~-l-~~~~vi~  135 (259)
                      +|+|.|++||||||+++.|+..+........--..+.+++.+...-.+.  .+... .  ... ..+... . .|..|++
T Consensus         6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~-~--~~~-~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTN-I--RRI-GFVANLLTRHGVIVLV   81 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHH-H--HHH-HHHHHHHHhCCCEEEE
Confidence            5999999999999999999999853221000001122232221110000  00000 0  000 111221 1 4677777


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |....    +.              .....+...    ...-.+|||++|++++.+|. .|+ .-.. ...+    .+..
T Consensus        82 ~~~~~----~~--------------~~~~~l~~~----~~~~~~v~l~~~~e~~~~R~-~~~-l~~~-~~~~----~i~~  132 (175)
T PRK00889         82 SAISP----YR--------------ETREEVRAN----IGNFLEVFVDAPLEVCEQRD-VKG-LYAK-ARAG----EIKH  132 (175)
T ss_pred             ecCCC----CH--------------HHHHHHHhh----cCCeEEEEEcCCHHHHHHhC-ccc-HHHH-HHcC----CCCC
Confidence            73210    10              001111111    12345899999999999995 221 0000 0000    0000


Q ss_pred             HHHHHHhcCCC--CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        216 LTTIYRNMNNP--ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       216 ~~~~y~~~~~~--~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +......++.+  +.++|+++..++++++++|.+.|....
T Consensus       133 ~~~~~~~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~~~  172 (175)
T PRK00889        133 FTGIDDPYEPPLNPEVECRTDLESLEESVDKVLQKLEELG  172 (175)
T ss_pred             CcccCCCCCCCCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            00111222222  357788877779999999999997643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.09  E-value=2e-09  Score=104.18  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=50.4

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .|+.|||+|+++++.+|...+......+..++ ....++. .+. +..   . ..+.++||++..+++++++.|.+.++.
T Consensus       155 a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~-~~~~Rd~-~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  231 (712)
T PRK09518        155 AEVRILLTAREEVRQARRSGQDRSETPGVVLE-DVAARDE-ADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVED  231 (712)
T ss_pred             CCeEEEEECCHHHHHHHHHHhhhcCCHHHHHH-HHHHHhh-hcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHh
Confidence            57899999999999999887754211111111 1111111 111 222   1 224699999999999999999999987


Q ss_pred             ccccc
Q psy16563        252 LPMFK  256 (259)
Q Consensus       252 ~~~~~  256 (259)
                      ...++
T Consensus       232 ~~~~~  236 (712)
T PRK09518        232 AIEEQ  236 (712)
T ss_pred             hhhhh
Confidence            65443

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.08  E-value=9.6e-10  Score=87.86  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-----ccch--H-----HHHHHHHHHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-----HDSL--L-----RRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-----~~~~--~-----~~~~~~~~~~~~~~~i~~~  127 (259)
                      +|.|.|++.|||||+++.|.+.+..+++...   ++.+.+.+..     ..++  .     ....+..-.......+...
T Consensus         3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~---~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~   79 (174)
T PF07931_consen    3 IIILNGPSSSGKSSIARALQERLPEPWLHLS---VDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM   79 (174)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE---HHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEe---cChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999887755432   2333332211     0010  0     0001010011222333333


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      . .|..||.|-.+......                 .+.+...+.  ..|-+.|-|.||++++.+|-..|++...-..  
T Consensus        80 a~aG~~VIvD~v~~~~~~l-----------------~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a--  138 (174)
T PF07931_consen   80 ARAGNNVIVDDVFLGPRWL-----------------QDCLRRLLA--GLPVLFVGVRCPLEILERRERARGDRPIGLA--  138 (174)
T ss_dssp             HHTT-EEEEEE--TTTHHH-----------------HHHHHHHHT--TS-EEEEEEE--HHHHHHHHHHHTSSSTTHH--
T ss_pred             HhCCCCEEEecCccCcHHH-----------------HHHHHHHhC--CCceEEEEEECCHHHHHHHHHhcCCcchHHH--
Confidence            3 68999999443321100                 111111122  3366789999999999999999986321111  


Q ss_pred             HHHHHHHHHHHHHHHhcC-C-CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        207 KKNAKFRELLTTIYRNMN-N-PELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~-~-~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                                ...+.... . .-.+.|||+..+++|+++.|.+.+
T Consensus       139 ----------~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  139 ----------AWQAEHVHEGGRYDLEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             ----------HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred             ----------HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence                      11122121 1 114899999988999999998765

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.08  E-value=2.1e-08  Score=78.21  Aligned_cols=173  Identities=20%  Similarity=0.261  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhcccc-----chHHHHHHHHHH--H-HHHHHHHHHh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDAHD-----SLLRRAYYSLGN--Y-IAAQDIKQDL  128 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~-~~~~~i~~~l  128 (259)
                      +++++++|.+|+||||+++.+.+.+ ....+..    ++-+.+.-.+..     ...+......|+  | ..++.+... 
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNy----G~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~-   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNY----GDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEM-   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeH----hHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHh-
Confidence            4679999999999999999999988 3222211    111111111100     000000001111  1 122223221 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch---HHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENE  205 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~  205 (259)
                       +.-+|+|-.-.-    .    .+.|+-..+|       .|.-....||.++.|.+||+++..|-.+-....+   ....
T Consensus        79 -~~~iivDtH~~I----k----TP~GylpgLP-------~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~  142 (189)
T COG2019          79 -ALEIIVDTHATI----K----TPAGYLPGLP-------SWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEE  142 (189)
T ss_pred             -hhceEEecccee----c----CCCccCCCCc-------HHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHH
Confidence             122777732110    0    1222212222       2333446699999999999999888644311111   1111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        206 LKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .....+..+-..-+|.-.....+.+|.+....+++.+.+|..+|..
T Consensus       143 i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         143 IREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            1111112122222233333556777777765699999999998864

>PRK06696 uridine kinase; Validated

Probab=99.08  E-value=1.3e-09  Score=91.05  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +...+|+|.|++||||||+|+.|++.++.
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34667999999999999999999999953

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.07  E-value=1.8e-09  Score=93.18  Aligned_cols=75  Identities=20%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ...+|||+++++++.+|+..+....+...... ..+.+...++.+.++.....++||+++.+++++.++|.+.+..
T Consensus        86 ~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~-l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416         86 DVRVLFLDASDEVLIRRYSETRRRHPLSGDGS-LLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             cEEEEEEECCHHHHHHHHhhcccCCCccCCcc-HHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence            34579999999999999975321111000000 1111112222222222223489999998899999999998854

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.05  E-value=1e-09  Score=88.34  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+|.||+||||||+++.|++.++..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~~   28 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPNL   28 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCccc
Confidence            49999999999999999999976543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.02  E-value=2.7e-09  Score=84.86  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc----ccC---CCC---------chHHHHHHhccccchHHHHHHHHHHHHH-H
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL----KST---PPS---------SIMSLREKFDAHDSLLRRAYYSLGNYIA-A  121 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~----~~~---p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  121 (259)
                      .+|+|.||+|+||||+++.|-+..+..+    ...   |+.         +-++|.+++..+.. +..+.+.-+.|.. .
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~f-LE~a~~~gnyYGT~~   83 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEF-LEWAEYHGNYYGTSR   83 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCc-EEEEEEcCCcccCcH
Confidence            3599999999999999999999874321    112   221         11345444444421 1111111111221 2


Q ss_pred             HHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecC-HHHHHHHHhhccCC
Q psy16563        122 QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVS-EAIRLQRLSRRKNF  199 (259)
Q Consensus       122 ~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~-~ev~~~Rl~~R~~~  199 (259)
                      ..++..+ .|..|++|-=|.      .+.               ++..    ...+-..||+.+| .+++.+|+.+||..
T Consensus        84 ~~ve~~~~~G~~vildId~q------Ga~---------------qvk~----~~p~~v~IFi~pPs~eeL~~RL~~Rgtd  138 (191)
T COG0194          84 EPVEQALAEGKDVILDIDVQ------GAL---------------QVKK----KMPNAVSIFILPPSLEELERRLKGRGTD  138 (191)
T ss_pred             HHHHHHHhcCCeEEEEEehH------HHH---------------HHHH----hCCCeEEEEEcCCCHHHHHHHHHccCCC
Confidence            3345544 688899983222      111               1111    1113457887777 58889999999965


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      +.+.        ..+++..++.++..   -+ ++|.++  +++...+++..++..
T Consensus       139 s~e~--------I~~Rl~~a~~Ei~~~~~fd-yvivNd--d~e~a~~~l~~ii~a  182 (191)
T COG0194         139 SEEV--------IARRLENAKKEISHADEFD-YVIVND--DLEKALEELKSIILA  182 (191)
T ss_pred             CHHH--------HHHHHHHHHHHHHHHHhCC-EEEECc--cHHHHHHHHHHHHHH
Confidence            5332        23445555555421   12 444443  378888888887743

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.02  E-value=2.4e-09  Score=88.02  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+++.|++.++
T Consensus         7 ~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          7 LIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            499999999999999999999876

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.00  E-value=1.1e-09  Score=89.66  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+++.|++.++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999883

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06547 hypothetical protein; Provisional

Probab=98.98  E-value=2.5e-09  Score=85.62  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ..++|+|.|++||||||+++.|++.++..+++
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~   45 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVH   45 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence            35679999999999999999999998876654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.97  E-value=6.9e-10  Score=90.67  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCC---C----Cch-H--HHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---P----SSI-M--SLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---~----~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      +|+|.|++||||||+|+.|+..|+...+..-   .    ... .  .....-... ..+......+.+...+.+.+..+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~   80 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK   80 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence            6999999999999999999999986543210   0    000 0  011100000 000000000111223445555555


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhccCC--chHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TLEENE  205 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--~~~~~~  205 (259)
                      +|..+-...|.+++.............++.+.++.+.++. .+.  ...|+.|||+++.++++.|...|+-.  ....  
T Consensus        81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~--~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~--  156 (194)
T PF00485_consen   81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELR--DLFDLKIFLDADEDLRLERRIQRDVAERGRSP--  156 (194)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHG--GG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-H--
T ss_pred             CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeec--ccceeEEEecccHHHHHHHHhhhhccccCCcc--
Confidence            6666666555544321111000001111233344444332 122  23689999999999999998777511  1111  


Q ss_pred             HHHHHHHHHHHHHHHHhcCC----CCeEEEeCCC
Q psy16563        206 LKKNAKFRELLTTIYRNMNN----PELVFVDNSE  235 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~----~~~~vID~s~  235 (259)
                       +............|..+-.    ...++|+...
T Consensus       157 -~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~  189 (194)
T PF00485_consen  157 -EEVIAQYERVRPGYERYIEPQKERADIVIPSGP  189 (194)
T ss_dssp             -HHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred             -eeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence             1122233355556665522    2357777654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.93  E-value=4.3e-08  Score=95.70  Aligned_cols=76  Identities=21%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHH-HHHHH-HHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHH
Q psy16563        174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA-KFREL-LTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVE  247 (259)
Q Consensus       174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~-~~~~~-~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~  247 (259)
                      +-.++.|||+|+++++.+|-.......   ..++.-. +..+| ..+..+..   . .++.++||++..+++++++.|.+
T Consensus       205 PdA~~KifL~As~e~RA~RR~~e~~~~---~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~  281 (863)
T PRK12269        205 VDADLKCYLDASIEARVARRWAQGTSR---LSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIAR  281 (863)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhhhcc---CCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHH
Confidence            335789999999999988865432211   1111111 11111 11111121   1 23469999999999999999999


Q ss_pred             HHhcc
Q psy16563        248 LIHNL  252 (259)
Q Consensus       248 ~l~~~  252 (259)
                      .+...
T Consensus       282 ~~~~~  286 (863)
T PRK12269        282 EAHRR  286 (863)
T ss_pred             HHHhc
Confidence            99775

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.92  E-value=2.4e-08  Score=81.66  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=25.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .+|+|.|++||||||+++.|++.++..++
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~   32 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRAIDIV   32 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence            46999999999999999999999887543

>PRK07261 topology modulation protein; Provisional

Probab=98.92  E-value=4.8e-09  Score=84.02  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW  139 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~  139 (259)
                      .|+|.|++||||||+++.|++.++.+++........   ..+...+           .......+...+.+..+|+|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~~~~~~~-----------~~~~~~~~~~~~~~~~wIidg~~   67 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---PNWQERD-----------DDDMIADISNFLLKHDWIIDGNY   67 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec---cccccCC-----------HHHHHHHHHHHHhCCCEEEcCcc
Confidence            499999999999999999999988776543211100   0000000           01222333444454458888653


Q ss_pred             cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      .... +                  ...      +...|.+|||++|.++|+.|+.+|.
T Consensus        68 ~~~~-~------------------~~~------l~~ad~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         68 SWCL-Y------------------EER------MQEADQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             hhhh-H------------------HHH------HHHCCEEEEEcCCHHHHHHHHHHHH
Confidence            3210 0                  000      1125889999999999999998774

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.91  E-value=2.4e-09  Score=83.88  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHh--CCCcE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDL--QKQPV  133 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l--~~~~v  133 (259)
                      .+|.|+|.+||||||+|+.|.++|.......--.+++.+|..+..+..+..     .++....++   +...+  .|.+|
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~-----~dR~e~~rr~~~~A~ll~~~G~iv   77 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSK-----EDREENIRRIAEVAKLLADQGIIV   77 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSH-----HHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCH-----HHHHHHHHHHHHHHHHHHhCCCeE
Confidence            469999999999999999999999765432211234566655554432211     111121222   22222  68888


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCC--CCEEEEEecCHHHHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK--PDLVIYLTVSEAIRLQRL  193 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--pdlvI~L~a~~ev~~~Rl  193 (259)
                      |+.-..    .|                  .....+.+....  .-+.|||+||.++|.+|=
T Consensus        78 Iva~is----p~------------------~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   78 IVAFIS----PY------------------REDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             EEE--------S------------------HHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             EEeecc----Cc------------------hHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            887211    11                  111111111111  246899999999999993

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.91  E-value=5e-09  Score=79.16  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~   82 (259)
                      |+|.|++||||||+++.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997

...

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.88  E-value=1.7e-08  Score=96.56  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-Hh-CCCcEEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQ-DL-QKQPVVM  135 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l-~~~~vi~  135 (259)
                      ..+|+++|++||||||+|+.|++++........--..+.++..+.....+.......  .+.....+.. .+ .|..||+
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~--~~~~l~~~a~~~~~~G~~Viv  537 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVE--NIRRVAEVARLMADAGLIVLV  537 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHH--HHHHHHHHHHHHHhCCCEEEE
Confidence            456999999999999999999999864211100011245555443221111110000  0011111111 22 5788888


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |-.....                  ..++.+......  .+-.+|||++|.+++.+|. .|+-....  ..+....+ ..
T Consensus       538 da~~~~~------------------~~R~~~r~l~~~--~~~~~v~L~~~~e~~~~R~-~r~L~~~~--~~~~l~~l-~~  593 (632)
T PRK05506        538 SFISPFR------------------EERELARALHGE--GEFVEVFVDTPLEVCEARD-PKGLYAKA--RAGEIKNF-TG  593 (632)
T ss_pred             ECCCCCH------------------HHHHHHHHhccc--CCeEEEEECCCHHHHHhhC-Ccchhhhc--cccccccc-cc
Confidence            8321110                  011111111111  1446899999999999994 23311000  00000111 11


Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .+..|.+. ..+.++||+++.++++++++|.+.|..
T Consensus       594 ~r~~y~~P-~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        594 IDSPYEAP-ENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             cccCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence            22223321 124689999877799999999999875

>PRK05439 pantothenate kinase; Provisional

Probab=98.87  E-value=5.9e-09  Score=90.60  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=26.2

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+...+|+|.|++||||||+|+.|++.++.
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~  112 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR  112 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3345667999999999999999999998763

>COG0645 Predicted kinase [General function prediction only]

Probab=98.86  E-value=8.2e-08  Score=75.31  Aligned_cols=115  Identities=20%  Similarity=0.176  Sum_probs=70.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc------cc-c-hHHHHHHHHHHHHHHHHHHHHh-CC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA------HD-S-LLRRAYYSLGNYIAAQDIKQDL-QK  130 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~------~~-~-~~~~~~~~~~~~~~~~~i~~~l-~~  130 (259)
                      ++.+.|.+|+||||+++.|++.++...++.     +.+++-+..      .+ + +... .-..-.+.+...-...+ .|
T Consensus         3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-----D~irk~L~g~p~~~r~~~g~ys~~-~~~~vy~~l~~~A~l~l~~G   76 (170)
T COG0645           3 LVLVGGLPGSGKSTLARGLAELLGAIRLRS-----DVIRKRLFGVPEETRGPAGLYSPA-ATAAVYDELLGRAELLLSSG   76 (170)
T ss_pred             EEEEecCCCccHhHHHHHHHhhcCceEEeh-----HHHHHHhcCCcccccCCCCCCcHH-HHHHHHHHHHHHHHHHHhCC
Confidence            488999999999999999999999987764     244443222      11 1 1111 00000112222222233 69


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN  198 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~  198 (259)
                      ..||+|..+....-                  .............+...|++.+|++++.+|+.+|..
T Consensus        77 ~~VVlDa~~~r~~~------------------R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          77 HSVVLDATFDRPQE------------------RALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             CcEEEecccCCHHH------------------HHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            99999976554321                  222222233334466789999999999999999975

>smart00072 GuKc Guanylate kinase homologues

Probab=98.83  E-value=4.3e-08  Score=79.39  Aligned_cols=159  Identities=18%  Similarity=0.225  Sum_probs=80.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc------------hHHHHHHhccccchHHHHHHHHHHHH-H
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS------------IMSLREKFDAHDSLLRRAYYSLGNYI-A  120 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~  120 (259)
                      +|+|.||+||||+|+++.|.+.....+      ...|+..            -+.+.+.+..+. +.....+.-..|. .
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~-fve~~~~~g~~YGt~   82 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGL-FLEWGEYSGNYYGTS   82 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCC-eEEEEEEcCcCcccC
Confidence            499999999999999999999863211      1112211            023333332221 0000000000011 1


Q ss_pred             HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEe-cCHHHHHHHHhhccC
Q psy16563        121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLT-VSEAIRLQRLSRRKN  198 (259)
Q Consensus       121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~-a~~ev~~~Rl~~R~~  198 (259)
                      ...+...+ ++..+|+|-.+.                     ....+...   ...| .+|||. .+.+++.+|+.+|++
T Consensus        83 ~~~i~~~~~~~~~~ild~~~~---------------------~~~~l~~~---~~~~-~vIfi~~~s~~~l~~rl~~R~~  137 (184)
T smart00072       83 KETIRQVAEQGKHCLLDIDPQ---------------------GVKQLRKA---QLYP-IVIFIAPPSSEELERRLRGRGT  137 (184)
T ss_pred             HHHHHHHHHcCCeEEEEECHH---------------------HHHHHHHh---CCCc-EEEEEeCcCHHHHHHHHHhcCC
Confidence            12234433 577888873321                     11222211   1112 689998 667789999999986


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        199 FTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       199 ~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .+....  ...+...+.....+    ..-..+|+++ . +++..+++.++|...
T Consensus       138 ~~~~~i--~~rl~~a~~~~~~~----~~fd~~I~n~-~-l~~~~~~l~~~i~~~  183 (184)
T smart00072      138 ETAERI--QKRLAAAQKEAQEY----HLFDYVIVND-D-LEDAYEELKEILEAE  183 (184)
T ss_pred             CCHHHH--HHHHHHHHHHHhhh----ccCCEEEECc-C-HHHHHHHHHHHHHhc
Confidence            543221  11111111111111    1113666666 3 899999999988653

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK12338 hypothetical protein; Provisional

Probab=98.83  E-value=8.7e-08  Score=83.37  Aligned_cols=168  Identities=11%  Similarity=0.130  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh----------------------ccccc-hH--H---
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----------------------DAHDS-LL--R---  109 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~----------------------~~~~~-~~--~---  109 (259)
                      +.+|+|.|++||||||+|+.||+.++..++...    +.+++..                      ...++ +.  .   
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~t----D~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i   79 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNIKHLIET----DFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELI   79 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccC----hHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHH
Confidence            356999999999999999999999997754211    1111110                      00000 00  0   


Q ss_pred             HHHHHHHHHHH----HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEec
Q psy16563        110 RAYYSLGNYIA----AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTV  184 (259)
Q Consensus       110 ~~~~~~~~~~~----~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a  184 (259)
                      -..|..+....    ...+.... .|..+|.+..+...-..                  .. ..... . .+-..++|..
T Consensus        80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i------------------~~-~~~~~-~-~~v~~~vl~~  138 (319)
T PRK12338         80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLI------------------DI-EQFEE-N-ASIHFFILSA  138 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHH------------------hh-hhhcc-c-CceEEEEEEC
Confidence            01122222222    22333333 57899999654432110                  00 00000 0 1223556678


Q ss_pred             CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        185 SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       185 ~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +.++..+|...|.....-.........-.+.+++...+.+ ..++.+|+|.  +++++++.+.+.|...
T Consensus       139 dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~N~--did~Tv~~ile~I~e~  205 (319)
T PRK12338        139 DEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIKND--DIDCTVKKMLSYIREV  205 (319)
T ss_pred             CHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeCCC--cHHHHHHHHHHHHHhh
Confidence            9999999999976322111111112222233333333332 2234555544  4899999999998765

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.80  E-value=7.1e-09  Score=86.38  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+++.|+..+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999999985

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.79  E-value=4.8e-08  Score=76.44  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+++.|++.+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999984

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.79  E-value=5.1e-08  Score=77.28  Aligned_cols=149  Identities=19%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccc--hHH-HHHHHHHHHHHHHHHH---HHhCCCcEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS--LLR-RAYYSLGNYIAAQDIK---QDLQKQPVV  134 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~i~---~~l~~~~vi  134 (259)
                      |+|+|++|+||||+++.|++. |..++.++..   .+.+.......  +.. ......+...+...++   .......+|
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vi   77 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAR---EIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEAEASAKSSDVVI   77 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE--TTH---HHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHHHHHHH-SSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEEeecHH---HHHHHhccccchhhhhcchHHHHHHHHHHHHHHHHHhhcCCCcEE
Confidence            899999999999999999998 7666644321   11111111100  110 0111222222222222   223578999


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      +||.+.++.+|....  ++..    ++.   +..... ....|++|+|..++......  .|.. +     .+....+.+
T Consensus        78 ~Dr~~~d~~aY~~~~--~~~~----~~~---l~~~~~-~~~yd~v~~l~~~~~~~~D~--~R~~-~-----~~~r~~~~~  139 (163)
T PF13521_consen   78 CDRGPLDTLAYSEFY--FGDY----PEE---LEREAR-LSRYDLVFLLPPDPPWEQDG--VRPE-D-----PEERERIDE  139 (163)
T ss_dssp             ESS-HHHHHHHHHHH--HS-------HH---HHHHHH-HS--SEEEEEE------------------------SHHHHHH
T ss_pred             EeCChHHHHHHHHHh--cCcc----hHH---HHHHHH-hCCCCEEEEeCCccccCCCC--CCCC-C-----HHHHHHHHH
Confidence            999999999996432  1111    111   221111 23478888888766331111  1211 1     111344556


Q ss_pred             HHHHHHHhcCCCCeEEEe
Q psy16563        215 LLTTIYRNMNNPELVFVD  232 (259)
Q Consensus       215 ~~~~~y~~~~~~~~~vID  232 (259)
                      .+.+.|... ..+++.|+
T Consensus       140 ~~~~~l~~~-~~~~~~v~  156 (163)
T PF13521_consen  140 LLKELLERH-GIPYIIVP  156 (163)
T ss_dssp             HHHHHHHGG-G---EEEE
T ss_pred             HHHHHHHHC-CCeEEEeC
Confidence            666666665 33567775

>PLN02348 phosphoribulokinase

Probab=98.78  E-value=2.4e-08  Score=88.79  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC----C--------C---CchHHH-------HHHhccccchHHHHHH
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST----P--------P---SSIMSL-------REKFDAHDSLLRRAYY  113 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~----p--------~---~~~~~~-------~~~~~~~~~~~~~~~~  113 (259)
                      +...+|+|.|++||||||+++.|++.|+......    |        .   -+.+.+       +..-... .+...   
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-~ldP~---  122 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-ALDPR---  122 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-cCCcc---
Confidence            3456799999999999999999999998532110    0        0   000100       1100000 00000   


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHH
Q psy16563        114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQR  192 (259)
Q Consensus       114 ~~~~~~~~~~i~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~R  192 (259)
                      +.+...+.+.+..+.+|..+-...|-+.+-.+.....+. ..++.+.++.+.++.. ..  ...|+.|||++++++++.|
T Consensus       123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~-p~~VVIVEGlh~L~~e~lr--~l~D~~IyVd~~~dvrl~R  199 (395)
T PLN02348        123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIE-PPKILVIEGLHPMYDERVR--DLLDFSIYLDISDDVKFAW  199 (395)
T ss_pred             cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcC-CCcEEEEechhhccCcccc--ccCcEEEEEECCHHHHHHH
Confidence            011223455666666777777777766543222111111 1112334444444421 22  3468999999999999777


Q ss_pred             Hhhcc
Q psy16563        193 LSRRK  197 (259)
Q Consensus       193 l~~R~  197 (259)
                      ...|.
T Consensus       200 RI~RD  204 (395)
T PLN02348        200 KIQRD  204 (395)
T ss_pred             HHHhh
Confidence            66554

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.75  E-value=4.2e-08  Score=84.71  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+|+|.|++||||||+++.|+..+.
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356799999999999999999988775

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.74  E-value=1.2e-08  Score=82.72  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+|+.|++.++
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999999984

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.72  E-value=4.4e-08  Score=86.22  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++|+|++||||||+++.|++++.
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~   24 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLR   24 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999999987

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.71  E-value=1.9e-08  Score=81.10  Aligned_cols=134  Identities=13%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH----HhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE----KFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM  135 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~  135 (259)
                      +|+|.|++||||||+++.|++.++........-+.+.+..    .-.....+...  ...+...+.+.+..+.++..+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~--~~~d~~~l~~~l~~l~~~~~~~~   78 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFE--SILDLDLLNKNLHDLLNGKEVEL   78 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCC--ccccHHHHHHHHHHHHCCCeeec
Confidence            4899999999999999999999863211000000011000    00000000000  00122234445555455666655


Q ss_pred             cCCccchhhhhhh-hhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHH-HHHHHhhcc
Q psy16563        136 DRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAI-RLQRLSRRK  197 (259)
Q Consensus       136 Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev-~~~Rl~~R~  197 (259)
                      ..|-+.+...... .......++.+.++...++..+...  .|+.||+++|.++ ++.|...|+
T Consensus        79 p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~--~d~~I~vd~~~~~~rl~rri~RD  140 (179)
T cd02028          79 PIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSL--LDIRVAVSGGVHLNRLLRRVVRD  140 (179)
T ss_pred             ccceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhh--cCEEEEEeCCccHHHHHHHHHHh
Confidence            5555544322110 0000111234455555555444333  7999999999998 776666554

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.68  E-value=7e-08  Score=80.89  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ...+|+|.|++||||||+++.|+..+...
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~   60 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQD   60 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            35679999999999999999999988753

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.67  E-value=7.3e-08  Score=89.55  Aligned_cols=163  Identities=14%  Similarity=0.049  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVM  135 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~  135 (259)
                      ..+|+|.|++||||||+++.|+..+... .+...+.. .........+.+.       +.+...+.+.+.++.+|..+-.
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~-------a~D~d~L~enL~~Lr~GksV~i  137 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPR-------LTDYDTLLDNIHDLKAGKSVQV  137 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChh-------hcchhHHHHHHHHHhCCCceec
Confidence            4579999999999999999999987432 22211110 0000000011111       1122233445656556766666


Q ss_pred             cCCccchhhhhhh-hhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMA-NELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNA  210 (259)
Q Consensus       136 Dr~~~s~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~  210 (259)
                      ..|-+.+-..... ...-....+.+.++.+.++..+.  ...|+.||+++|.+.++.|...|+    +.+.+. .   ..
T Consensus       138 PiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr--~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es-V---i~  211 (656)
T PLN02318        138 PIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLR--PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE-I---IH  211 (656)
T ss_pred             CccccccCcccCCceeecCCCcEEEEechhhccHhHH--hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH-H---HH
Confidence            6555543211100 00000111234455555544333  336899999988666655543333    112221 1   22


Q ss_pred             HHHHHHHHHHHhcCCC----CeEEEeC
Q psy16563        211 KFRELLTTIYRNMNNP----ELVFVDN  233 (259)
Q Consensus       211 ~~~~~~~~~y~~~~~~----~~~vID~  233 (259)
                      .+.+.+...|..+..|    ..++|++
T Consensus       212 q~~~~VkP~y~~FIeP~kk~ADIII~n  238 (656)
T PLN02318        212 QISETVYPMYKAFIEPDLQTAHIKIVN  238 (656)
T ss_pred             HHHHhhcchHHHHhCcchhcceEEEec
Confidence            3445555666655333    2455644

>PRK07429 phosphoribulokinase; Provisional

Probab=98.65  E-value=2.7e-07  Score=81.16  Aligned_cols=135  Identities=19%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc---cccCCCCc-h-HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSS-I-MSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQK  130 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~---~~~~p~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  130 (259)
                      ++..+|+|.|++||||||+++.|++.++..   .+...+.. . ...++.+.... +....   .+.....+.+..+.++
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~-l~p~~---~~~d~l~~~l~~L~~g   81 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITA-LDPRA---NNLDIMYEHLKALKTG   81 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcc-cCccc---hHHHHHHHHHHHHHCC
Confidence            345679999999999999999999998733   22221110 0 11122221110 00000   0011233344444456


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ..+....|-.++..+.....+. ..+..+.++...++. ...  ...|++|||++|.+++.+|...|.
T Consensus        82 ~~I~~P~yd~~~g~~~~~~~i~-p~~iVIvEG~~~l~~~~lr--~~~D~~I~Vda~~evr~~Rri~Rd  146 (327)
T PRK07429         82 QPILKPIYNHETGTFDPPEYIE-PNKIVVVEGLHPLYDERVR--ELYDFKVYLDPPEEVKIAWKIKRD  146 (327)
T ss_pred             CceecceeecCCCCcCCcEecC-CCcEEEEechhhcCcHhHH--hhCCEEEEEECCHHHHHHHHHHHH
Confidence            6555554444432211000000 001122233322221 111  236899999999999986655443

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.64  E-value=1.2e-07  Score=81.60  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.|++||||||+++.|+..++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~   25 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGS   25 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCC
Confidence            4899999999999999999998753

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA03135 thymidine kinase; Provisional

Probab=98.64  E-value=4.4e-07  Score=79.05  Aligned_cols=153  Identities=15%  Similarity=0.167  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc----ccccCCCCchHHHHHHhcc-------------ccchH----HH------
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA----SLKSTPPSSIMSLREKFDA-------------HDSLL----RR------  110 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~----~~~~~p~~~~~~~~~~~~~-------------~~~~~----~~------  110 (259)
                      ...|.|+|+.|+||||+++.|++....    .++.||   ...++.+|.+             .+++.    ..      
T Consensus        10 ~~rIYlDG~~GvGKTT~~~~l~~~~~~~~~vl~vpEP---M~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q   86 (343)
T PHA03135         10 LIRVYLDGPFGIGKTSMLNEMPDHSPDGVPVLKVFEP---MKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQ   86 (343)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhcCCCCceEEecCc---HHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHH
Confidence            445999999999999999999986322    223343   3444444421             01110    01      


Q ss_pred             HHHHHHHHHHHHHHHHHh---------CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEE
Q psy16563        111 AYYSLGNYIAAQDIKQDL---------QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLV  179 (259)
Q Consensus       111 ~~~~~~~~~~~~~i~~~l---------~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlv  179 (259)
                      ..|+.......+.+.+..         ....+|+||.+.+.. .|-.++...|.+  .+. .+-.++. .....+-.+ +
T Consensus        87 ~kfatP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~l--s~~-~l~sl~~~lp~~~pG~n-i  162 (343)
T PHA03135         87 AKFADPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDC--SLE-MLISSIIRLPLEPPGCN-L  162 (343)
T ss_pred             HHhcchHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCC--CHH-HHHHHHHhCCcCCCCCe-E
Confidence            111111122223333321         125789999988753 343444322222  111 1112221 122112223 4


Q ss_pred             EEEec-CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHh
Q psy16563        180 IYLTV-SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN  222 (259)
Q Consensus       180 I~L~a-~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~  222 (259)
                      |+... +++++.+|+.+|++..+..     ...++..++..|.-
T Consensus       163 Vl~~L~~~~E~~rRl~~R~R~gE~~-----d~~yL~aL~n~Y~~  201 (343)
T PHA03135        163 VITILPDEKEHVNRLSSRNRPGETT-----DRNMLRALNAVYSS  201 (343)
T ss_pred             EEEECCCHHHHHHHHHHcCCCcccc-----CHHHHHHHHHHHHH
Confidence            44555 6899999999998653221     23455555555543

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.61  E-value=8e-07  Score=74.06  Aligned_cols=157  Identities=18%  Similarity=0.137  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~  132 (259)
                      ..+|+|+|.+||||...++.|.+++...++..-+   ++-.+.+                   +-..-++...+  .|.+
T Consensus        31 ~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~-------------------~p~lwRfw~~lP~~G~i   91 (230)
T TIGR03707        31 RVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT-------------------QWYFQRYVQHLPAAGEI   91 (230)
T ss_pred             CEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc-------------------ChHHHHHHHhCCCCCeE
Confidence            5569999999999999999999999987653211   1111100                   01112223334  5999


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc-h----HHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT-L----EEN  204 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~-~----~~~  204 (259)
                      .|+||.|+......-  ..|...+..+...+.   .+.+.+......=+.+||.+|.+++.+|+.+|-... .    ...
T Consensus        92 ~IF~rSwY~~~lv~r--v~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~  169 (230)
T TIGR03707        92 VLFDRSWYNRAGVER--VMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPM  169 (230)
T ss_pred             EEEeCchhhhHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHH
Confidence            999999997643221  101100000111111   222223333445578999999999999999886321 0    111


Q ss_pred             HHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCC
Q psy16563        205 ELKKNAKFRELLTTIYRNM------NNPELVFVDNSEK  236 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~  236 (259)
                      .+. ..........+|+++      ...||++|+++..
T Consensus       170 D~~-~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk  206 (230)
T TIGR03707       170 DLA-SLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK  206 (230)
T ss_pred             HHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence            111 233344455555544      2357999999986

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PHA03134 thymidine kinase; Provisional

Probab=98.60  E-value=1.5e-06  Score=75.72  Aligned_cols=152  Identities=20%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh--cc--cccCCCCchHHHHHHhcc--------------ccchHH--H--HHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK--AS--LKSTPPSSIMSLREKFDA--------------HDSLLR--R--AYYSL  115 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~--~~--~~~~p~~~~~~~~~~~~~--------------~~~~~~--~--~~~~~  115 (259)
                      ...|.|+|+-|.||||.++.|+..-.  ..  ++.||   ...++.+|..              .+++..  .  .....
T Consensus        13 ~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEP---M~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~   89 (340)
T PHA03134         13 IVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEP---MAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY   89 (340)
T ss_pred             EEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCc---HHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence            44599999999999999999987422  22  23343   3344444421              111110  1  11112


Q ss_pred             HH------HHHHHHHHHHhC----------CCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCC--CC
Q psy16563        116 GN------YIAAQDIKQDLQ----------KQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLM--KP  176 (259)
Q Consensus       116 ~~------~~~~~~i~~~l~----------~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~p  176 (259)
                      |.      ......+.+.+.          ...+|+||...+.. .|-.++...|.+  .    ...+......++  .|
T Consensus        90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~l--s----~~~~~~l~~~~p~~~p  163 (340)
T PHA03134         90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDM--S----ACALLALAATLPREPP  163 (340)
T ss_pred             HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCC--C----HHHHHHHHHhCCCCCC
Confidence            21      111222333221          25789999988753 343433322222  1    122222222222  14


Q ss_pred             -CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        177 -DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       177 -dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                       |-+|+++.+++++.+|+.+|++..+. .    ...++..++..|.-+
T Consensus       164 G~niVl~~l~~~e~~~Rl~~R~R~gE~-i----d~~yL~~l~n~Y~~l  206 (340)
T PHA03134        164 GGNLVVTTLNPDEHLRRLRARARIGEQ-I----DAKLIAALRNVYAML  206 (340)
T ss_pred             CCeEEEEeCCHHHHHHHHHHcCCCccc-c----CHHHHHHHHHHHHHH
Confidence             78999999999999999999865322 1    345666666666543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.59  E-value=6.6e-07  Score=73.38  Aligned_cols=121  Identities=14%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCch----HHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-CC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSI----MSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-QK  130 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-~~  130 (259)
                      +.+|.+.|++||||||++..+...+ +...+...+..+    ..+.++....+ .... .............+..++ ++
T Consensus        15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~a~~~~   93 (199)
T PF06414_consen   15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASE-LTQKEASRLAEKLIEYAIENR   93 (199)
T ss_dssp             -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHH-HHHHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHcC
Confidence            4458899999999999999999988 222221111111    11111111111 1100 000111122233344444 57


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ..+++|....+...+                  ..+.+.++....--.++++.+|+++.++|+..|-
T Consensus        94 ~nii~E~tl~~~~~~------------------~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   94 YNIIFEGTLSNPSKL------------------RKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             --EEEE--TTSSHHH------------------HHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             CCEEEecCCCChhHH------------------HHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            888998654332111                  1111111111222347889999999999998884

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=4.5e-06  Score=69.50  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         14 LVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .++++++....-....|++.+-+...++...        ..  .+.+|.|-|++|.||||+|..||.+||...+
T Consensus        55 ~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~--------~~--~p~IILIGGasGVGkStIA~ElA~rLgI~~v  118 (299)
T COG2074          55 KDEIREVYQKLLEKGDPEVAKRYLLWRRIRK--------MK--RPLIILIGGASGVGKSTIAGELARRLGIRSV  118 (299)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--------cC--CCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence            3444444444344455555544443433211        12  2445888899999999999999999998754

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.56  E-value=1.4e-06  Score=79.20  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=26.8

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .+.+|++.|++||||||++..||.+++...
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~  283 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITR  283 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence            356799999999999999999999999763

>PLN02772 guanylate kinase

Probab=98.55  E-value=9.8e-07  Score=78.63  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++|+|.||+|+||+|+++.|.+.+.
T Consensus       136 k~iVlsGPSGvGKsTL~~~L~~~~p  160 (398)
T PLN02772        136 KPIVISGPSGVGKGTLISMLMKEFP  160 (398)
T ss_pred             cEEEEECCCCCCHHHHHHHHhhhcc
Confidence            4699999999999999999988754

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.55  E-value=3.9e-07  Score=84.62  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v  133 (259)
                      .....+|++.|++||||||+++.++...+..+++.     +.+.          .       ........+.++ .|..|
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~-----D~lg----------~-------~~~~~~~a~~~L~~G~sV  423 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNA-----DTLG----------S-------TQNCLTACERALDQGKRC  423 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECc-----HHHH----------H-------HHHHHHHHHHHHhCCCcE
Confidence            34556899999999999999999999877666643     1111          0       011122334444 68899


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN  198 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~  198 (259)
                      |+|.......                  .+..+...++....+-..||+++|.+++.+|+..|..
T Consensus       424 VIDaTn~~~~------------------~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       424 AIDNTNPDAA------------------SRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             EEECCCCCHH------------------HHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence            9996554321                  1122222333334466789999999999999999864

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.55  E-value=7.7e-07  Score=81.79  Aligned_cols=173  Identities=14%  Similarity=0.103  Sum_probs=95.2

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK  130 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~  130 (259)
                      +...+|+|+|.+||||+++++.|.+.+...++..-+   ++-.+..                   +-..-++...+  .|
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~-------------------~~flwRfw~~lP~~G   98 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE-------------------RPPMWRFWRRLPPKG   98 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc-------------------CcHHHHHHHhCCCCC
Confidence            345679999999999999999999999887653211   1111100                   01112223334  59


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch----H
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL----E  202 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~----~  202 (259)
                      .++|+||+|+......-.  .|...+..+...+.   .+...+......=+.+||.+|.+++.+|+.+|-.. ..    .
T Consensus        99 ~I~IFdRSWY~~vlverv--~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s  176 (493)
T TIGR03708        99 KIGIFFGSWYTRPLIERL--EGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVT  176 (493)
T ss_pred             eEEEEcCcccchhhHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCC
Confidence            999999999976433210  01100000001111   11222233333446899999999999999988631 11    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563        203 ENELKKNAKFRELLTTIYRNM------NNPELVFVDNSEKS--VHESSNDIVELIH  250 (259)
Q Consensus       203 ~~~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~~--~eev~~~I~~~l~  250 (259)
                      ..++. ..+.......+|+++      ...||++|+++...  --.+++.|.+.|.
T Consensus       177 ~~D~~-~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~  231 (493)
T TIGR03708       177 PEDWK-QLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIR  231 (493)
T ss_pred             HHHHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHH
Confidence            11111 233444455555544      23579999999841  2234445555444

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.55  E-value=9.2e-08  Score=80.97  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=23.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+|.|.+||||||+++.|++.++..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~   26 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFARE   26 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            49999999999999999999988743

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG3062|consensus

Probab=98.53  E-value=1.3e-06  Score=71.45  Aligned_cols=142  Identities=18%  Similarity=0.190  Sum_probs=79.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH-HHHHHHHHHHHHHHHHHH-hCCCcEEEc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR-RAYYSLGNYIAAQDIKQD-LQKQPVVMD  136 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~-l~~~~vi~D  136 (259)
                      |+|+|+|.+.|||||.|+.|++.|......-...-.+.-.--++++..+.. ..--++ +-.+...+... .++..||+|
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~l-Rg~L~S~v~R~Lsk~~iVI~D   80 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKAL-RGKLRSAVDRSLSKGDIVIVD   80 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHH-HHHHHHHHHhhcccCcEEEEe
Confidence            679999999999999999999998765421000000000001122111100 000011 11222233333 368999999


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~  216 (259)
                      ...     |      -+|+       .++||+..+......++|+..||+|.+++--..|..... .. .  ..+.++.+
T Consensus        81 slN-----y------IKGf-------RYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e-~g-y--~~e~le~L  138 (281)
T KOG3062|consen   81 SLN-----Y------IKGF-------RYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGE-DG-Y--DDELLEAL  138 (281)
T ss_pred             ccc-----c------cccc-------eeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCC-CC-C--CHHHHHHH
Confidence            421     1      2222       567777776666667899999999999999877753321 11 0  23355556


Q ss_pred             HHHHHhc
Q psy16563        217 TTIYRNM  223 (259)
Q Consensus       217 ~~~y~~~  223 (259)
                      -..|++-
T Consensus       139 ~~RyEeP  145 (281)
T KOG3062|consen  139 VQRYEEP  145 (281)
T ss_pred             HHHhhCC
Confidence            6667653

>PHA03138 thymidine kinase; Provisional

Probab=98.52  E-value=3.2e-06  Score=73.71  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...|.|+|+.|+||||.++.+.+.+.
T Consensus        12 ~~riYleG~~GvGKTT~~~~~l~~~~   37 (340)
T PHA03138         12 ILRIYLDGAFGIGKTTAAEAFLHGFA   37 (340)
T ss_pred             EEEEEEECCCCcCHHhHHHHHHHhhh
Confidence            34599999999999999997776544

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.48  E-value=3.1e-06  Score=68.42  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+|.||+||||||+++.|.+.++..
T Consensus         4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~   29 (183)
T PF00625_consen    4 PIVLVGPSGSGKSTLAKRLIQEFPDK   29 (183)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcccc
Confidence            49999999999999999999987643

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK15453 phosphoribulokinase; Provisional

Probab=98.47  E-value=1.8e-07  Score=79.77  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.++|+|.|.+||||||+++.|++.++.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~   31 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR   31 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999998864

>COG4639 Predicted kinase [General function prediction only]

Probab=98.47  E-value=6.9e-06  Score=63.57  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      .++++.|++||||||.++..-.  ....+     +.+.++...+....  .... -...-...+...+++.+ +|...|.
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~~--~~~~l-----sld~~r~~lg~~~~~e~sqk-~~~~~~~~l~~~l~qrl~~Gk~tii   74 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENFL--QNYVL-----SLDDLRLLLGVSASKENSQK-NDELVWDILYKQLEQRLRRGKFTII   74 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhCC--Cccee-----cHHHHHHHhhhchhhhhccc-cHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            4599999999999999975321  11122     23455554432111  0000 00000123444555555 6888889


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN  198 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~  198 (259)
                      |.+-..                  ++....+...+......+.+|++++|++.|.+|...|.+
T Consensus        75 dAtn~r------------------r~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R  119 (168)
T COG4639          75 DATNLR------------------REDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER  119 (168)
T ss_pred             EcccCC------------------HHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence            854321                  223334444444455566789999999999999875554

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.46  E-value=1.3e-07  Score=70.86  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=26.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      +|+|.|++||||||+|+.|++.++..++.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~   29 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVIS   29 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence            59999999999999999999999987653

...

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.46  E-value=2.6e-06  Score=77.04  Aligned_cols=176  Identities=15%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-cch--HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-DSL--LRRAYYSLGNYIAAQDIKQDLQKQ  131 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~~~l~~~  131 (259)
                      +.....|+|.|++|||||||++.|++.+|...+.+.+..  .+.+..... ..+  ......+......... .......
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~--~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~-~~~~a~~  292 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRE--YVFSHLGGDEMALQYSDYDKIALGHAQYIDF-AVKYANK  292 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHH--HHHHhhcCCccCCChhhhHHHHhhhHHHHHH-HHHhcCC
Confidence            333456999999999999999999999987765442211  121111111 111  1100011111111100 0011356


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK  211 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~  211 (259)
                      .+++|+-..++.+|....  .+.    .+...+.+   .. ....|++++++.++.-..+=+  |...+ .+.    ...
T Consensus       293 ~~f~Dt~~~~t~~y~~~y--~g~----~~p~l~~~---~~-~~ryDlvlll~pd~Pwv~DGl--R~~~D-~e~----R~~  355 (399)
T PRK08099        293 VAFIDTDFVTTQAFCKKY--EGR----EHPFVQAL---ID-EYRFDLTILLENNTPWVADGL--RSLGS-SVD----RKR  355 (399)
T ss_pred             eEEEeCChHHHHHHHHHh--CCC----CCHHHHHH---HH-hCCCCEEEEcCCCCCcccCCc--ccCCC-HHH----HHH
Confidence            899999999998887531  111    12222222   21 234677777755532221111  11111 111    233


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +.+.+.+.|.+. +.++++|+. ++ .++=..++.++|+.+.
T Consensus       356 f~~~l~~~l~~~-g~~~v~l~~-g~-~~eR~~~a~~~i~~~l  394 (399)
T PRK08099        356 FQNLLKEMLKEN-NIEYVHVES-PD-YDKRYLRCVELVDQML  394 (399)
T ss_pred             HHHHHHHHHHHc-CCCEEEECC-CC-HHHHHHHHHHHHHHHh
Confidence            556667777665 345777742 23 7777777777777654

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.45  E-value=1.8e-06  Score=73.57  Aligned_cols=72  Identities=19%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             CCEEEEEecCHHHHHHHHhh-ccC--CchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSR-RKN--FTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~-R~~--~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .--+|||+|+.+++++|-.. |..  .......++    -.++-++...++.....++|||++.++.+.-+.|.+.+..
T Consensus        82 ~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le----~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen   82 DVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLE----AIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             ceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHH----HHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence            34589999999999999753 221  111111111    1122222233333334599999998899999999988753

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.45  E-value=2.5e-06  Score=72.46  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=96.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~  132 (259)
                      ..+|+|+|.+||||..+++.|.+++...++..-+   .+-.+.+                  ... .-++...+  .|.+
T Consensus        56 ~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~~------------------~p~-lWRfw~~lP~~G~i  116 (264)
T TIGR03709        56 SLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEELD------------------HDF-LWRIHKALPERGEI  116 (264)
T ss_pred             cEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc------------------Cch-HHHHHHhCCCCCeE
Confidence            5569999999999999999999999987653210   1111000                  001 11223334  5999


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cch----HHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FTL----EEN  204 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~~----~~~  204 (259)
                      .|+||.|+......-..  |...+..+...+.   .+...+......=+.+||.+|.+++.+|+.+|-. ...    ...
T Consensus       117 ~IF~RSWY~~vl~~rv~--g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~  194 (264)
T TIGR03709       117 GIFNRSHYEDVLVVRVH--GLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPA  194 (264)
T ss_pred             EEEcCccccchhhhhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHH
Confidence            99999999865332110  1000000011111   1222233333345689999999999999998852 110    011


Q ss_pred             HHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCC--CHhhHHHHHHHHHhcc
Q psy16563        205 ELKKNAKFRELLTTIYRNM------NNPELVFVDNSEK--SVHESSNDIVELIHNL  252 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~------~~~~~~vID~s~~--~~eev~~~I~~~l~~~  252 (259)
                      ... ..........+|+++      ...||++|+++..  .--.+.+.|.+.|+.+
T Consensus       195 D~~-~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~  249 (264)
T TIGR03709       195 DLK-ERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESL  249 (264)
T ss_pred             HHH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHc
Confidence            111 223334444455544      2457999999985  1233566666666654

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.44  E-value=2.1e-05  Score=68.05  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +.+|+|.|++||||||+|..||++++...
T Consensus        92 p~iIlI~G~sgsGKStlA~~La~~l~~~~  120 (301)
T PRK04220         92 PIIILIGGASGVGTSTIAFELASRLGIRS  120 (301)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            45799999999999999999999998763

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=98.36  E-value=1.5e-06  Score=72.50  Aligned_cols=171  Identities=15%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~  132 (259)
                      +.+|+|+|.+||||+.+++.|.+++...++..-+   ++-.+..     .+              ..-+....+  .|.+
T Consensus        31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~-----~p--------------~lwRfw~~lP~~G~I   91 (228)
T PF03976_consen   31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR-----RP--------------FLWRFWRALPARGQI   91 (228)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT-----S---------------TTHHHHTTS--TT-E
T ss_pred             cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC-----CC--------------cHHHHHHhCCCCCEE
Confidence            4569999999999999999999999887653210   1111100     00              111222233  6999


Q ss_pred             EEEcCCccchhhhhhhhhhccccC-CCCCcchhh---hhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cc-h---HH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSD-LKLPDEDDD---IYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FT-L---EE  203 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~-~~l~~~~~~---l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~-~---~~  203 (259)
                      +|+||.|+......-..  | ..+ ..+...++.   +...+......=+.+||.+|.+++.+|+.+|.. +. .   .+
T Consensus        92 ~if~rSWY~~~l~~rv~--~-~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~  168 (228)
T PF03976_consen   92 GIFDRSWYEDVLVERVE--G-FIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSP  168 (228)
T ss_dssp             EEEES-GGGGGTHHHHT--T-SSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--H
T ss_pred             EEEecchhhHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCH
Confidence            99999999865432111  1 000 000011111   112222333344689999999999999998852 11 0   01


Q ss_pred             HHHHH---HHHHHHHHHHHHHhc--CCCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563        204 NELKK---NAKFRELLTTIYRNM--NNPELVFVDNSEKS--VHESSNDIVELIH  250 (259)
Q Consensus       204 ~~~e~---~~~~~~~~~~~y~~~--~~~~~~vID~s~~~--~eev~~~I~~~l~  250 (259)
                      ...+.   ...|.....+.....  ...||++|+++...  --.+++.|.+.|+
T Consensus       169 ~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le  222 (228)
T PF03976_consen  169 EDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALE  222 (228)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhH
Confidence            11111   222333333333222  24689999999851  1224444444443

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.4e-05  Score=66.55  Aligned_cols=171  Identities=19%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--  128 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--  128 (259)
                      ..|...+|+++|.+++||.-..+.+.+.++....+   .|.++..+..                   +-...+..+.+  
T Consensus        70 ~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~-------------------qwY~qRy~~~lPa  130 (270)
T COG2326          70 ETGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERG-------------------QWYFQRYVAHLPA  130 (270)
T ss_pred             hcCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhc-------------------cHHHHHHHHhCCC
Confidence            34445569999999999999999999999876532   2222211100                   11112222333  


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhh-------hcccccCCCCCEEEEEecCHHHHHHHHhhccCC--
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI-------YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--  199 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--  199 (259)
                      .|.+||+||+|+.-....  +..|-+.    ++.....       ..++.....--+.+||.+++|++.+|...|...  
T Consensus       131 ~GeiviFdRSwYnr~gVe--RVmGfct----~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~  204 (270)
T COG2326         131 AGEIVIFDRSWYNRAGVE--RVMGFCT----PKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPL  204 (270)
T ss_pred             CCeEEEechhhccccCee--eccccCC----HHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHH
Confidence            589999999998642211  1111111    1111111       112222333346889999999999999988632  


Q ss_pred             -----chHHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        200 -----TLEENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       200 -----~~~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                           ++++.  + ..........+|.++    .  ..||++|.++.. --.=++-|..+|..+.
T Consensus       205 K~WKlSp~D~--~-~r~~WddYt~A~~em~~~T~T~~APW~vV~addK-k~aRlnvi~~il~~l~  265 (270)
T COG2326         205 KQWKLSPMDL--E-SRDRWDDYTKAKDEMFARTSTPEAPWYVVPADDK-KRARLNVIRHLLSALP  265 (270)
T ss_pred             hccCCCHHHH--H-HHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCcH-HHHHHHHHHHHHHhcc
Confidence                 22221  1 223333333344443    2  457999999987 3444445555555544

>PHA03133 thymidine kinase; Provisional

Probab=98.31  E-value=2.3e-05  Score=68.75  Aligned_cols=134  Identities=17%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc----cccCCCCchHHHHHHhccc--------------cchH--HHH--HHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSSIMSLREKFDAH--------------DSLL--RRA--YYSL  115 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~----~~~~p~~~~~~~~~~~~~~--------------~~~~--~~~--~~~~  115 (259)
                      ...|.|+|+.|.||||.++.+...++..    ++.||   ..+|+.+|..+              +++.  ...  .-..
T Consensus        40 ~~rvYlDG~~GvGKTTt~~~l~~a~~~~~~vl~~pEP---M~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~  116 (368)
T PHA03133         40 LLRIYVDGPHGLGKTTTAAALAAALGRRDDIEYVPEP---MAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSA  116 (368)
T ss_pred             EEEEEEeCCCcCCHHHHHHHHHHhhCCCCCeEEecCc---HHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHH
Confidence            3459999999999999999998887643    23343   33444444211              1110  000  1111


Q ss_pred             H------HHHHHHHHHHHh-----------C--CCcEEEcCCccch-hhhhhhhhhccccCCCCCcchhhhhcc---ccc
Q psy16563        116 G------NYIAAQDIKQDL-----------Q--KQPVVMDRFWHST-SAYGMANELVKNSDLKLPDEDDDIYSW---PKD  172 (259)
Q Consensus       116 ~------~~~~~~~i~~~l-----------~--~~~vi~Dr~~~s~-~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~  172 (259)
                      |      .......+.+.+           .  ...+++||.+.+. +.|-.++..-|.+  .    +..+...   +..
T Consensus       117 Q~kFatPy~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~l--s----~~~lislla~lp~  190 (368)
T PHA03133        117 QVTMSTPYAVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSL--S----LPAVLSFAALLPP  190 (368)
T ss_pred             HHHhcChHHHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCC--C----HHHHHHHHHhCCC
Confidence            1      111122232211           0  2468999999875 3444444322222  1    2222222   222


Q ss_pred             CCCCCEEEEEecCHHHHHHHHhhccCCc
Q psy16563        173 LMKPDLVIYLTVSEAIRLQRLSRRKNFT  200 (259)
Q Consensus       173 ~~~pdlvI~L~a~~ev~~~Rl~~R~~~~  200 (259)
                      ...-+-+|+++.++++..+|+.+|++..
T Consensus       191 ~~pG~NiVl~~L~~~E~~~RL~~R~R~g  218 (368)
T PHA03133        191 TTPGTNLVLGALPEAAHAERLAQRQRPG  218 (368)
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHcCCCc
Confidence            2334679999999999999999998653

>KOG3078|consensus

Probab=98.31  E-value=2e-05  Score=65.41  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=92.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH------HHHHHHHHHHHhC----C
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG------NYIAAQDIKQDLQ----K  130 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~----~  130 (259)
                      .++.|++|+||+|++..+++.++..++..    ++-+|+.+....++..++--..+      -......+...++    .
T Consensus        18 ~v~~G~pg~gkgt~a~~l~~~~~~~hl~t----Gdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   18 AVLLGAPGSGKGTQAPRLTKNFGVIHIST----GDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             EEEEeCCCCCCCccCHHHHHhcCCccchh----HHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            89999999999999999999999888643    55566655544333222110110      0111122222221    2


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-----------
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-----------  199 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-----------  199 (259)
                      ...++|.|+.                     +..+..........+|++|.|.+|.+.+.+|+..|.-.           
T Consensus        94 ~~~ildg~Pr---------------------t~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~  152 (235)
T KOG3078|consen   94 KGFILDGFPR---------------------TVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEF  152 (235)
T ss_pred             cccccCCCCc---------------------chHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccc
Confidence            3344444332                     22211212223456899999999999999999988310           


Q ss_pred             ch-------------HHHHHHHHHHHHHHHHHHHHhcC--------CCC-eEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        200 TL-------------EENELKKNAKFRELLTTIYRNMN--------NPE-LVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       200 ~~-------------~~~~~e~~~~~~~~~~~~y~~~~--------~~~-~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .+             ...+.+...+-.......|.+..        ... +..+++..  .++++..+...+....
T Consensus       153 ~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~--~~~v~~~v~~~l~~~~  226 (235)
T KOG3078|consen  153 NPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK--PEEVFPNVYAFLSKKV  226 (235)
T ss_pred             cCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc--hhHhHHHHHHHHHhhh
Confidence            00             00111112333444444555442        122 34444443  7999999999987653

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.28  E-value=2.2e-05  Score=63.31  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=23.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ||+|.|..|||++|+++.||+.||..++.
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d   29 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYD   29 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCC
Confidence            69999999999999999999999988653

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.26  E-value=5.3e-06  Score=70.09  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=24.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+|+|.|++|+||||+++.|+..+..
T Consensus        82 pfIIgiaGsvavGKST~ar~L~~ll~~  108 (283)
T COG1072          82 PFIIGIAGSVAVGKSTTARILQALLSR  108 (283)
T ss_pred             CEEEEeccCccccHHHHHHHHHHHHhh
Confidence            567999999999999999999987764

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6.6e-07  Score=76.78  Aligned_cols=74  Identities=24%  Similarity=0.322  Sum_probs=53.9

Q ss_pred             cccHHHHHHHHHh----hccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         11 YPSLVSVLSILKS----AQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        11 ~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .++-.+++..|+.    +...-.--..+++|+|.|.....+..+.+..+++   |.+.||+|||||.+|+.||+.++.++
T Consensus        49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSN---ILLiGPTGsGKTlLAqTLAk~LnVPF  125 (408)
T COG1219          49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSN---ILLIGPTGSGKTLLAQTLAKILNVPF  125 (408)
T ss_pred             CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeecc---EEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3556677777776    1122222244778999998654344446778887   99999999999999999999999886


Q ss_pred             c
Q psy16563         87 K   87 (259)
Q Consensus        87 ~   87 (259)
                      .
T Consensus       126 a  126 (408)
T COG1219         126 A  126 (408)
T ss_pred             e
Confidence            4

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.17  E-value=8.7e-07  Score=70.87  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+++.+.|++....+++.|..+.+|.|  +.++||+||||||+.++|.....
T Consensus         3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884           3 RFENVSKAYPGGREALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             eehhhhhhcCCCchhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhhhc
Confidence            3467788898887789999999999999  99999999999999999987654

>PHA00729 NTP-binding motif containing protein

Probab=98.15  E-value=1.2e-05  Score=66.67  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +..|+|+|++|+||||+|..|++.++
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44599999999999999999999986

>PRK06761 hypothetical protein; Provisional

Probab=98.14  E-value=0.00028  Score=60.74  Aligned_cols=27  Identities=41%  Similarity=0.639  Sum_probs=24.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++|+|+|++||||||+++.|++.+...
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~   30 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQN   30 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence            469999999999999999999998753

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.12  E-value=3.6e-05  Score=70.91  Aligned_cols=170  Identities=16%  Similarity=0.184  Sum_probs=93.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC---CchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCC
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP---SSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQ  131 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~  131 (259)
                      ...+|+++|.++|||...++.|.+.+...++..-+   ++-.+..                   +...-++...+  .|.
T Consensus       298 ~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~-------------------~~~lwRf~~~lP~~G~  358 (493)
T TIGR03708       298 RSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKA-------------------QHYLWRFWRHIPRRGR  358 (493)
T ss_pred             CCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHc-------------------CcHHHHHHHhCCCCCe
Confidence            35569999999999999999999999887653211   1111110                   01111223333  589


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccCC-------ch
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-------TL  201 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-------~~  201 (259)
                      +.|+||+|+......-  ..|...+......+.++..   .+......-+.+||.+|.+++.+|+.+|-..       ++
T Consensus       359 i~iFdRSwY~~vlver--v~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~  436 (493)
T TIGR03708       359 ITIFDRSWYGRVLVER--VEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKITD  436 (493)
T ss_pred             EEEEcCCccCCcceee--ecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcCCH
Confidence            9999999997542210  0010000000111112211   2233344557899999999999999988621       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCCH--hhHHHHHHHHHh
Q psy16563        202 EENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKSV--HESSNDIVELIH  250 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~~--eev~~~I~~~l~  250 (259)
                      .+  +. +.+.......+|+++    .  ..||++|+++....  -.+++.|...|.
T Consensus       437 ~D--~~-~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~  490 (493)
T TIGR03708       437 ED--WR-NREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE  490 (493)
T ss_pred             HH--HH-HHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence            21  11 333344444455544    2  45899999998522  224444544443

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>KOG0635|consensus

Probab=98.12  E-value=2.1e-05  Score=60.60  Aligned_cols=29  Identities=28%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ..+|.|+|.+||||||+|-.|.+.|....
T Consensus        31 GcviWiTGLSgSGKStlACaL~q~L~qrg   59 (207)
T KOG0635|consen   31 GCVIWITGLSGSGKSTLACALSQALLQRG   59 (207)
T ss_pred             CcEEEEeccCCCCchhHHHHHHHHHHhcC
Confidence            45699999999999999999999887654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=1.8e-06  Score=71.93  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..++++.|....+|.|  ++|.||+||||||+.+.+|....
T Consensus        16 ~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          16 VEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             eEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            4567778888999999  99999999999999999998644

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=98.08  E-value=1.8e-05  Score=67.36  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             CcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccC---CCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        131 QPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDL---MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       131 ~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      ..+|+||.+.+.. .|-.++-.-|.+      .+..+......+   ...+-+|+++.++++..+|+++|++..+. .  
T Consensus       103 ~~~ifDRHplAA~vcFPlary~~G~l------s~~~li~lla~~p~~~pG~niVl~~L~~~E~~rRl~~R~R~gE~-v--  173 (281)
T PF00693_consen  103 VWLIFDRHPLAATVCFPLARYLLGDL------SFEDLISLLATFPPEPPGTNIVLMTLPEEEHLRRLKARGRPGER-V--  173 (281)
T ss_dssp             EEEEEES-THHHHTHHHHHHHHTTSS-------HHHHHHHHTTS----TTEEEEEEE--HHHHHHHHHHTSTTT-S----
T ss_pred             eEEEEecchhHHHHHHHHHHHHhCCC------CHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-c--
Confidence            4689999998753 444554333322      133333333222   23345788999999999999999965432 1  


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy16563        207 KKNAKFRELLTTIYRN  222 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~  222 (259)
                        +..++..++..|.-
T Consensus       174 --d~~~l~~Lr~~Y~~  187 (281)
T PF00693_consen  174 --DLNYLRALRNVYHA  187 (281)
T ss_dssp             ---HHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHH
Confidence              45577777777664

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.07  E-value=2.1e-05  Score=61.72  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh-cccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK-ASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~-~~~~~~   89 (259)
                      |+=.+++||||||++..|+..+| ..++..
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQn   31 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQN   31 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCcccc
Confidence            55678999999999999999999 766643

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.07  E-value=2.6e-06  Score=66.97  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..++..|...++|.+  |+|+||+||||||+.+.+|....
T Consensus        17 ~il~~isl~v~~Ge~--iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          17 KILNNISLSVRAGEF--IAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             eeecceeeeecCCce--EEEeCCCCccHHHHHHHHHhccC
Confidence            456677788999999  99999999999999999998644

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.06  E-value=3.7e-05  Score=64.36  Aligned_cols=70  Identities=21%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             EEEEecCHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        179 VIYLTVSEAIRLQRLSR--RKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       179 vI~L~a~~ev~~~Rl~~--R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ++||+|+.++..+|-..  |..+-.....+   .+-..+-++.-.++.+....+|||+..++.+..+.|.+.+..
T Consensus        86 iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l---~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660          86 VLFLEADDETLVRRYSETRRSHPLSEDGLL---LEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             EEEEECchhHHHHHHhhhhhcCCCCccCcH---HHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence            88999999999999753  22110011101   111122222233333334599999998899999999999873

>PLN02165 adenylate isopentenyltransferase

Probab=98.06  E-value=4.4e-05  Score=66.94  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .++|+|.||+||||||++..||+.++..+++
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIs   73 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPSEIIN   73 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence            4469999999999999999999999866543

>KOG0744|consensus

Probab=98.06  E-value=0.00015  Score=62.80  Aligned_cols=49  Identities=24%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC-------chHHHHHHhccccch
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------SIMSLREKFDAHDSL  107 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~  107 (259)
                      .+|.+.||||+|||++++.||+++..+....-..       +-.-+.+||.+.+.+
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKl  233 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKL  233 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhH
Confidence            3599999999999999999999998764322111       124567888877654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.05  E-value=7.3e-07  Score=78.20  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.... ++++.|..+.+|.+  ++|.||+||||||+.+.+|....
T Consensus        11 K~yg~~~-~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          11 KSFGSFE-VLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEcCCce-eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            3444332 56677788999998  99999999999999999998544

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.00  E-value=1.1e-06  Score=72.58  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++...|++....+++.|.++.+|.+  |+|.|++||||||+.+.|.....
T Consensus         6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~--VaiIG~SGaGKSTLLR~lngl~d   55 (258)
T COG3638           6 VKNLSKTYPGGHQALKDVNLEINQGEM--VAIIGPSGAGKSTLLRSLNGLVD   55 (258)
T ss_pred             EeeeeeecCCCceeeeeEeEEeCCCcE--EEEECCCCCcHHHHHHHHhcccC
Confidence            455667787666778888899999998  99999999999999999988443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.99  E-value=1.2e-06  Score=77.25  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++.+.|. ....+++.|..+.+|.+  ++|.||+||||||+.+.||...
T Consensus        10 ~v~k~yg-~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          10 NVSKSFG-DFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             eeeeecC-CeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            3445565 44567778888999988  9999999999999999999853

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.99  E-value=5.9e-06  Score=55.77  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +|+|+|++||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999999997

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.98  E-value=4.9e-06  Score=67.96  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ++.+.|. ..+++++.+....+|..  ++|.||+||||||+.+.|..
T Consensus         7 ~l~K~fg-~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126           7 NLSKSFG-DKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             eeeEEeC-CeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHC
Confidence            3444553 45688888889999987  99999999999999999865

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.94  E-value=0.00019  Score=63.35  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHH-HHHHHHHHHHHHHHHh--CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY-YSLGNYIAAQDIKQDL--QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l--~~~~vi~  135 (259)
                      ..|+|.|++||||||+++.|++.++..++.+++..  .+.+.......+....+ .-+..+...  .....  ...++++
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~--~~~~~~~~~~~l~~~d~~~i~~g~~~~--~~~~~~~a~~iif~  238 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE--YVEEKLGGDEALQYSDYAQIALGQQRY--IDYAVRHAHKIAFI  238 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH--HHHHhcCCCcccCHHHHHHHHHHHHHH--HHHHHhhcCCeEEE
Confidence            35999999999999999999999998876554211  12222111111111110 011111111  11122  3578999


Q ss_pred             cCCccchhhhhh
Q psy16563        136 DRFWHSTSAYGM  147 (259)
Q Consensus       136 Dr~~~s~~~~~~  147 (259)
                      |+-...+.+|..
T Consensus       239 D~~~~~t~~y~~  250 (325)
T TIGR01526       239 DTDFITTQVFAK  250 (325)
T ss_pred             cCChHHHHHHHH
Confidence            998888888864

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.93  E-value=6.2e-06  Score=68.39  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+++.+..+.+|.+  ++|.||+||||||+...|+--
T Consensus        19 ~~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          19 EALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcc
Confidence            467777888999998  999999999999999998764

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.93  E-value=0.00017  Score=60.00  Aligned_cols=43  Identities=26%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF  101 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~  101 (259)
                      -+|++.|.||.|||++|+.|++.|.+..+....-..+..|+.+
T Consensus        13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~   55 (222)
T PF01591_consen   13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL   55 (222)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc
Confidence            4699999999999999999999998766544333344555443

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.88  E-value=6.3e-06  Score=69.72  Aligned_cols=40  Identities=25%  Similarity=0.122  Sum_probs=34.2

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...+++.|....+|.+  ++|.||+||||||+.+.|+..+..
T Consensus        15 ~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          15 KPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             eeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhccCCC
Confidence            3466777788888887  999999999999999999997763

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.87  E-value=0.00057  Score=52.72  Aligned_cols=167  Identities=16%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHH---HhCCCcE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDA-HDSLLRRAYYSLGNYIAAQDIKQ---DLQKQPV  133 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~---~l~~~~v  133 (259)
                      .++.+|+|.+|+||||+.+.|++. |...+.+++..+-........ .-.+.+...|+.  ......+..   ...+..|
T Consensus         9 ~~~fIltGgpGaGKTtLL~aLa~~-Gfatvee~~r~ii~~es~~gg~~lPW~D~~afae--l~~~~~l~q~r~~~~~~~v   85 (183)
T COG3911           9 HKRFILTGGPGAGKTTLLAALARA-GFATVEEAGRDIIALESAQGGTALPWTDPGAFAE--LVGLQRLRQTRSAAVGGRV   85 (183)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHc-CceeeccchhhHHHHHHhcCCCcCCccChHHHHH--HHHHHHHHHhhcccccCce
Confidence            345999999999999999999885 444444433221111111110 001222223221  111112222   2357899


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR  213 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~  213 (259)
                      ++||.+.+.++|...-  .+ .     ...+.+..|.+... ..--|||.-|.-.+.+--..|.- +     ++....+.
T Consensus        86 FfDR~~~da~a~l~~l--sg-a-----~la~~v~~~~~~~~-Yn~rVfl~qp~~~iyqqde~Rk~-t-----ldeAv~~~  150 (183)
T COG3911          86 FFDRGPPDALAYLRFL--SG-A-----LLADEVATIVREGR-YNPRVFLVQPWPFIYQQDEERKI-T-----LDEAVAFY  150 (183)
T ss_pred             eeccCcHHHHHHHHHh--cc-c-----HHHHHHHHHHHhcC-CCCcEEecCCccccccchhhccc-C-----HHHHHHHH
Confidence            9999999888775311  11 0     11122233332222 22245555554444443333321 1     12245566


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHH
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I  245 (259)
                      +.+...|..+..   -.|+--..++++-++-|
T Consensus       151 e~lv~aYt~LGy---elv~lp~a~Ve~Rv~fV  179 (183)
T COG3911         151 EVLVAAYTELGY---ELVPLPPAPVEDRVRFV  179 (183)
T ss_pred             HHHHHHHHhcCc---eeeecCCccHHHHHHHH
Confidence            788888988743   33444333355444433

>KOG0733|consensus

Probab=97.84  E-value=3.2e-05  Score=71.81  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=39.0

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC---------chHHHHHHhcc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS---------SIMSLREKFDA  103 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~---------~~~~~~~~~~~  103 (259)
                      ..+.+.  |.|.||+|||||.+|+.+|..++.+++..++.         +-..+|++|++
T Consensus       220 v~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~  277 (802)
T KOG0733|consen  220 VRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ  277 (802)
T ss_pred             CCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH
Confidence            444455  99999999999999999999999998765432         23678888876

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=5e-06  Score=75.97  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhhcc-ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         31 EVEELLNIYSRIN-ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        31 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +++++.-.|++.. .++++.|.....|..  |+|.|++||||||++++|++.+..
T Consensus       338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEk--vAIlG~SGsGKSTllqLl~~~~~~  390 (573)
T COG4987         338 ELRNVSFTYPGQQTKALKNFNLTLAQGEK--VAILGRSGSGKSTLLQLLAGAWDP  390 (573)
T ss_pred             eeccceeecCCCccchhhccceeecCCCe--EEEECCCCCCHHHHHHHHHhccCC
Confidence            5667777788764 789999999999988  999999999999999999987654

>KOG1384|consensus

Probab=97.78  E-value=0.00025  Score=61.39  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      -++|+|.|++|||||-|+-.||.+++.+.+..
T Consensus         7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINs   38 (348)
T KOG1384|consen    7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINS   38 (348)
T ss_pred             ceEEEEecCCCCChhhhHHHHHHhCCceeecc
Confidence            45699999999999999999999999886643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.77  E-value=2.2e-05  Score=59.27  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|+||||+++.+++.++..++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~   28 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIE   28 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccc
Confidence            6899999999999999999999876543

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG3308|consensus

Probab=97.74  E-value=0.00012  Score=59.12  Aligned_cols=28  Identities=11%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .-+|+|.|.+.|||||||+.|.+.++..
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~   31 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGC   31 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCC
Confidence            3469999999999999999999999876

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.73  E-value=1.7e-05  Score=64.76  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=31.1

Q ss_pred             ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         42 INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ....+++.+..+.+++.  .+|.||+||||||+.+.|-+..
T Consensus        19 ~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          19 DKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             chhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHhhc
Confidence            44566667667777665  9999999999999999997753

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.71  E-value=7.6e-05  Score=67.27  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+||||||+++.|++.++..++.
T Consensus        50 ILLiGppG~GKT~lAraLA~~l~~~fi~   77 (441)
T TIGR00390        50 ILMIGPTGVGKTEIARRLAKLANAPFIK   77 (441)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            9999999999999999999999987653

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.70  E-value=2.4e-05  Score=65.02  Aligned_cols=37  Identities=22%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|.+..+|..  ++|.|++||||||+++.|+.+..
T Consensus        22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhcccC
Confidence            55667778888888  99999999999999999998654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.67  E-value=2.8e-05  Score=63.06  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus         7 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166         7 VLKGLNFAAERGEV--LALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG4238|consensus

Probab=97.66  E-value=8.9e-05  Score=64.79  Aligned_cols=161  Identities=14%  Similarity=0.110  Sum_probs=91.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHH---HHhCCCcEEEc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIK---QDLQKQPVVMD  136 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~~vi~D  136 (259)
                      .|-++|.+|+||||+.-.|.+.+....+..-+.+++.+|.-+..+-++..     .+++.-.+++.   .+......|+=
T Consensus        52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~-----edreenirriaevaklfadaglvci  126 (627)
T KOG4238|consen   52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSP-----EDREENIRRIAEVAKLFADAGLVCI  126 (627)
T ss_pred             eEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCc-----hhHHHHHHHHHHHHHHHhcCCceee
Confidence            39999999999999999999999887765444456677766655543321     12223333332   22233333332


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhh------ccCCchHHHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR------RKNFTLEENELKKNA  210 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~------R~~~~~~~~~~e~~~  210 (259)
                      ..+.|.  |...+.              ...+.-.....|.+-+|++++.++|.+|-.+      |.+.          .
T Consensus       127 tsfisp--f~~dr~--------------~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkarage----------i  180 (627)
T KOG4238|consen  127 TSFISP--FAKDRE--------------NARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGE----------I  180 (627)
T ss_pred             ehhcCh--hhhhhh--------------hhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccc----------c
Confidence            222222  111111              1111112223477789999999999998422      2110          1


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .-+--+...|++-.. +-++++++..++.+.+.++.+.|...
T Consensus       181 ~gftgids~ye~pe~-~e~vl~t~~~~v~~cvqqvve~lq~~  221 (627)
T KOG4238|consen  181 KGFTGIDSDYEKPET-PERVLKTNLSTVSDCVQQVVELLQEQ  221 (627)
T ss_pred             ccccccccccCCCCC-hhHHhhcCCchHHHHHHHHHHHHHhc
Confidence            112233444543322 23677888777899999999988764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.66  E-value=1e-05  Score=66.51  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            45666677888877  9999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.65  E-value=3.2e-05  Score=70.01  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             CCcccccccccccHH----HHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHH
Q psy16563          1 MSSKYQLFAQYPSLV----SVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQ   76 (259)
Q Consensus         1 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~   76 (259)
                      |+++..+.++++.|-    ++.+.+..     -.....+++.++.. ..+++.|..+.+|..  ++|.|++||||||+++
T Consensus         1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~L~~isl~i~~Gei--~~LvG~NGsGKSTLLr   72 (400)
T PRK10070          1 MAIKLEIKNLYKIFGEHPQRAFKYIEQ-----GLSKEQILEKTGLS-LGVKDASLAIEEGEI--FVIMGLSGSGKSTMVR   72 (400)
T ss_pred             CCcEEEEeeeEEecCCChHHHHHHHhc-----cccHHHHHhhcCCe-EEEEeEEEEEcCCCE--EEEECCCCchHHHHHH
Confidence            556665555555442    33344333     23344566666544 457778888898887  9999999999999999


Q ss_pred             HHHHHhh
Q psy16563         77 TVAKKLK   83 (259)
Q Consensus        77 ~l~~~~~   83 (259)
                      .|+..+.
T Consensus        73 ~I~Gl~~   79 (400)
T PRK10070         73 LLNRLIE   79 (400)
T ss_pred             HHHcCCC
Confidence            9998653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.63  E-value=1.7e-05  Score=66.42  Aligned_cols=48  Identities=19%  Similarity=0.374  Sum_probs=37.0

Q ss_pred             HHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++.+.|.. ....++.|..+..|.+  +++.||+||||||..+++-+.+.
T Consensus         5 ~nvsk~y~~-~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINrLie   52 (309)
T COG1125           5 ENVSKRYGN-KKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINRLIE   52 (309)
T ss_pred             eeeehhcCC-ceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhcccC
Confidence            344555553 3455667778888888  99999999999999999987654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=3.1e-05  Score=65.26  Aligned_cols=45  Identities=20%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             HHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         36 LNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .-.|++. .++.+.|....+|.+  ++|.||+||||||+.+.+...+.
T Consensus        11 ~v~y~~~-~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          11 TVSYGNR-PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EEEECCE-eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCc
Confidence            3345544 477888888898887  99999999999999999977443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.62  E-value=1.5e-05  Score=65.79  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence            56677778888887  9999999999999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=9.3e-05  Score=69.97  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=52.1

Q ss_pred             cccccHHHHHHHHHhhc---cCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563          9 AQYPSLVSVLSILKSAQ---YSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus         9 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ....+...++++|+...   .++..++.+.+....+..         ..  +.|++++.||||.|||++++.+|+.++-.
T Consensus       309 k~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~---------~~--kGpILcLVGPPGVGKTSLgkSIA~al~Rk  377 (782)
T COG0466         309 KDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTK---------KL--KGPILCLVGPPGVGKTSLGKSIAKALGRK  377 (782)
T ss_pred             chhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc---------cC--CCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence            45677889999999832   555666666665544332         12  24789999999999999999999999988


Q ss_pred             cccC
Q psy16563         86 LKST   89 (259)
Q Consensus        86 ~~~~   89 (259)
                      +++.
T Consensus       378 fvR~  381 (782)
T COG0466         378 FVRI  381 (782)
T ss_pred             EEEE
Confidence            7653

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.61  E-value=0.00012  Score=66.47  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             cccHHHHHHHHHhhccCChH----HHHHHHHHhhhccccCCCC-CCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         11 YPSLVSVLSILKSAQYSSLP----EVEELLNIYSRINETNDQD-SGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.+-.++...|++....+-.    ...+++++|.+........ +....++.   |.|.||+||||||+|+.|++.++.+
T Consensus        59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~---iLl~Gp~GtGKT~lAr~lA~~l~~p  135 (412)
T PRK05342         59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSN---ILLIGPTGSGKTLLAQTLARILDVP  135 (412)
T ss_pred             CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCce---EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            45667777777762222222    2334456666653321110 11223333   9999999999999999999999877


Q ss_pred             ccc
Q psy16563         86 LKS   88 (259)
Q Consensus        86 ~~~   88 (259)
                      ++.
T Consensus       136 f~~  138 (412)
T PRK05342        136 FAI  138 (412)
T ss_pred             cee
Confidence            653

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.61  E-value=0.0028  Score=49.43  Aligned_cols=160  Identities=17%  Similarity=0.123  Sum_probs=84.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCch----HHHHHH-hcccc-ch---HHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSSI----MSLREK-FDAHD-SL---LRRAYYSLGNYIA  120 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~~----~~~~~~-~~~~~-~~---~~~~~~~~~~~~~  120 (259)
                      .+|.+-|.+-+|||++|..+.+....++...         |+...    ....+. ...+. .+   ....++...-...
T Consensus        24 riVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~~~  103 (205)
T COG3896          24 RIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMHSR  103 (205)
T ss_pred             eEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHHHH
Confidence            4599999999999999999998777665321         11100    000000 00000 00   0000111000011


Q ss_pred             HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      ...|.... +|..||.|-+.+.--              .+++-...+      ...+-..|=+.||.|+.++|-..|++.
T Consensus       104 r~ai~a~ad~G~~~i~Ddv~~~r~--------------~L~Dc~r~l------~g~~v~~VGV~~p~E~~~~Re~rr~dR  163 (205)
T COG3896         104 RRAIRAYADNGMNVIADDVIWTRE--------------WLVDCLRVL------EGCRVWMVGVHVPDEEGARRELRRGDR  163 (205)
T ss_pred             HHHHHHHhccCcceeehhcccchh--------------hHHHHHHHH------hCCceEEEEeeccHHHHHHHHhhcCCc
Confidence            11222222 577888886655310              011111111      123556778999999999998877643


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcC-CCC-eEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNMN-NPE-LVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~~-~~~-~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .+--..      .      .|+... ... .+.|||+.+++.|.+..|.+.++
T Consensus       164 ~pG~~r------g------~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         164 HPGWNR------G------SARAVHADAEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             Ccchhh------h------hHHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence            221110      0      222221 122 48899999999999999987653

>KOG0058|consensus

Probab=97.61  E-value=1.5e-05  Score=75.23  Aligned_cols=52  Identities=17%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             HHHHHHHHhhhccc--cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         31 EVEELLNIYSRINE--TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        31 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+++.-+|+.++.  ++++.|..+.+|+.  +++.||+|+||||++.+|-+.+..
T Consensus       467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~rfY~P  520 (716)
T KOG0058|consen  467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLRFYDP  520 (716)
T ss_pred             EEEEeeeecCCCCCchhhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence            35566778888876  88899999999998  999999999999999999887764

>PRK09169 hypothetical protein; Validated

Probab=97.60  E-value=0.00035  Score=73.11  Aligned_cols=140  Identities=11%  Similarity=0.010  Sum_probs=77.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC----chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS----SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMD  136 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~D  136 (259)
                      |+|+|..|+||||+++.|+..++..++.....    .+..|.++|...+ +.        +......+...+....||..
T Consensus      2113 IvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG-~F--------Re~Eaa~V~Dllr~~vVLST 2183 (2316)
T PRK09169       2113 RRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG-LS--------PEQAAARVRDALRWEVVLPA 2183 (2316)
T ss_pred             cceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC-ch--------HHHHHHHHHHHhcCCeEEeC
Confidence            89999999999999999999999887753211    1123444444333 11        12334445554443333332


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC------ch-HHHHH--H
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF------TL-EENEL--K  207 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~------~~-~~~~~--e  207 (259)
                                     |++. ...++....+.       .-.++|||..+.+++.+|+....+.      +. .|..+  .
T Consensus      2184 ---------------GGGa-v~~~enr~~L~-------~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~ 2240 (2316)
T PRK09169       2184 ---------------EGFG-AAVEQARQALG-------AKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTA 2240 (2316)
T ss_pred             ---------------CCCc-ccCHHHHHHHH-------HCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHH
Confidence                           3333 11122222221       1246999999999999999643211      11 00000  1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEeCCC
Q psy16563        208 KNAKFRELLTTIYRNMNNPELVFVDNSE  235 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~  235 (259)
                      ......+..+..|+++.+   +.|++..
T Consensus      2241 esl~Lk~eRhpLYEqvAD---l~V~~~~ 2265 (2316)
T PRK09169       2241 DSLRTKNKTHKLYEKLQD---LEVAPAR 2265 (2316)
T ss_pred             HHHHHHHHhHHHHHHhcC---cccccCC
Confidence            133355667788887754   5566544

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.60  E-value=4.8e-05  Score=61.40  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+.|..+..|.+  +++.||+||||||+.+.+|....
T Consensus        20 ~le~vsL~ia~ge~--vv~lGpSGcGKTTLLnl~AGf~~   56 (259)
T COG4525          20 ALEDVSLTIASGEL--VVVLGPSGCGKTTLLNLIAGFVT   56 (259)
T ss_pred             hhhccceeecCCCE--EEEEcCCCccHHHHHHHHhcCcC
Confidence            34456667888888  99999999999999999998654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.60  E-value=4e-05  Score=61.61  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=27.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~   79 (259)
                      .+++.|....+|..  ++|.||+||||||+.+.+.
T Consensus        10 ~l~~isl~i~~G~~--~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          10 NLQNLDVSIPLNVL--VVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHh
Confidence            45566677888877  9999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.59  E-value=3.2e-05  Score=56.66  Aligned_cols=29  Identities=14%  Similarity=0.060  Sum_probs=23.9

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~   79 (259)
                      .+....++..  ++|.|++||||||+++.+.
T Consensus         8 vsl~i~~ge~--v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           8 VLVDVYGKVG--VLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEEcCCEE--EEEEcCCCCCHHHHHHHhh
Confidence            3345666666  9999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.58  E-value=4.1e-05  Score=63.42  Aligned_cols=35  Identities=17%  Similarity=0.059  Sum_probs=29.5

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +++.|..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus         3 l~~vs~~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          3 LDKTDFVMGYHEH--IGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             eeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence            3455667888877  9999999999999999999764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.57  E-value=2.1e-05  Score=60.09  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=27.0

Q ss_pred             CCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         50 SGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        50 ~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus         5 ~~~i~~g~~--~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    5 SLEIKPGEI--VAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEETTSE--EEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEcCCCE--EEEEccCCCccccceeeeccccc
Confidence            345677776  99999999999999999988765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.56  E-value=4.2e-05  Score=63.40  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          18 QALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             eEEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhCCcC
Confidence            356667777888887  99999999999999999987653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.56  E-value=5e-05  Score=62.74  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        17 ALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56667777888876  9999999999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.56  E-value=5.2e-05  Score=63.90  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence            356677778888887  9999999999999999998765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.55  E-value=4.3e-05  Score=63.28  Aligned_cols=37  Identities=19%  Similarity=0.101  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        18 ALDNLNFHITKGEM--VFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55666777888877  99999999999999999998653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.55  E-value=3.6e-05  Score=72.33  Aligned_cols=45  Identities=20%  Similarity=0.034  Sum_probs=36.7

Q ss_pred             HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      -.|+....++++.|..+.+|..  |+|.|++||||||++++|...+.
T Consensus       342 f~Y~~~~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       342 FGYPGSPPVLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             EecCCCCceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            3454434478888888999988  99999999999999999987654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.55  E-value=4.2e-05  Score=64.18  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          15 VLKGVDLDVRRGEI--LAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777888887  99999999999999999997653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0707|consensus

Probab=97.55  E-value=0.0025  Score=52.70  Aligned_cols=29  Identities=28%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +...-|+|.||+|+||+|+.++|.+.++.
T Consensus        35 ~~~~~ivl~gpsg~gk~tll~~l~ee~~~   63 (231)
T KOG0707|consen   35 GDFKPIVLSGPSGVGKSTLLKRLREELGG   63 (231)
T ss_pred             CCCceEEEeCCCCcchhHHHHHHHHHcCC
Confidence            33344999999999999999999999985

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.55  E-value=5.5e-05  Score=58.23  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.||+||||||+++.|++.+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCc
Confidence            3899999999999999999998654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.55  E-value=0.00011  Score=60.77  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++-+.+.||||+||||+|..+|+.++..+..
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~   80 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI   80 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence            3449999999999999999999999987643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.54  E-value=5.5e-05  Score=62.48  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56667777888887  9999999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.54  E-value=4.8e-05  Score=63.47  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          15 ALKDISLDIPKGEI--TALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence            45666677888877  9999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.54  E-value=9.7e-05  Score=56.41  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=26.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPP   91 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~   91 (259)
                      +|+|.|+.||||||+++.+++.++.. .+.+|.
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT   56 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT   56 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence            49999999999999999999999864 344443

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.54  E-value=5.1e-05  Score=62.96  Aligned_cols=37  Identities=22%  Similarity=0.199  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56667777888887  99999999999999999997653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.53  E-value=6.1e-05  Score=62.79  Aligned_cols=37  Identities=22%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          19 KALDDVSFSIKKGET--LGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eeecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            356677778888887  9999999999999999999764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.53  E-value=5.3e-05  Score=62.46  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 il~~vs~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          16 ALDDISLTIKKGEF--VLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666677788876  99999999999999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.52  E-value=5.4e-05  Score=63.53  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          15 ALDDVSFSVRPGEI--HGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EecCceEEecCCcE--EEEECCCCCCHHHHHHHHcCCC
Confidence            56667777888877  9999999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.52  E-value=5e-05  Score=62.70  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~~sl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          16 ALDGINISISAGEF--VFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            55666677888887  9999999999999999999865

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.52  E-value=5.9e-05  Score=63.46  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          16 ALKDVSLSINPGEF--VALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence            56667778888887  9999999999999999999765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.51  E-value=6.7e-05  Score=62.76  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56667777888887  9999999999999999999764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.51  E-value=5.7e-05  Score=62.00  Aligned_cols=37  Identities=22%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        13 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        13 ILDDLNLTIEKGKM--YAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EEeceEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            56667777888877  99999999999999999997653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.51  E-value=6.8e-05  Score=61.87  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        15 ~l~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          15 VLKGIDLTVKKGEV--VVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             eecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666677888877  99999999999999999997643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.50  E-value=5.4e-05  Score=62.87  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 il~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          19 ALEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            55667777888887  9999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.50  E-value=6.4e-05  Score=63.30  Aligned_cols=36  Identities=22%  Similarity=0.151  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        15 ILKGVNLTVKKGEI--HAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             EEeccceEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56667778888887  9999999999999999998763

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.50  E-value=0.00018  Score=65.20  Aligned_cols=74  Identities=22%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             cccHHHHHHHHHhh----ccCChHHHHHHHHHhhhcccc-CCC--CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         11 YPSLVSVLSILKSA----QYSSLPEVEELLNIYSRINET-NDQ--DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        11 ~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+..++...|++.    .........+++++|.+.... ...  ......++.   |.|.||+|+|||++|+.||+.++
T Consensus        65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~---iLL~GP~GsGKT~lAraLA~~l~  141 (413)
T TIGR00382        65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSN---ILLIGPTGSGKTLLAQTLARILN  141 (413)
T ss_pred             CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCce---EEEECCCCcCHHHHHHHHHHhcC
Confidence            45677777777772    222333344556777765321 000  001122232   99999999999999999999988


Q ss_pred             cccc
Q psy16563         84 ASLK   87 (259)
Q Consensus        84 ~~~~   87 (259)
                      ..+.
T Consensus       142 ~pf~  145 (413)
T TIGR00382       142 VPFA  145 (413)
T ss_pred             CCeE
Confidence            6653

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.50  E-value=6.4e-05  Score=62.96  Aligned_cols=38  Identities=16%  Similarity=0.054  Sum_probs=32.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 ~il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          19 TALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             eeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            356667777888887  99999999999999999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.50  E-value=6.2e-05  Score=62.13  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          15 ALDDLNLDIADGEF--VVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             eeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666677888887  99999999999999999998653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.50  E-value=5.3e-05  Score=62.94  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          15 ILFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999987643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.49  E-value=6.8e-05  Score=62.29  Aligned_cols=36  Identities=19%  Similarity=0.116  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            55666677888877  9999999999999999999764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.49  E-value=8.2e-05  Score=63.87  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...++...|+.. ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        26 ~~~~~~~~~~~~-~il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          26 SKEEILKKTGQT-VGVNDVSLDVREGEI--FVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             hhhhhhhhcCCc-eEeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            344555556443 356777778888887  99999999999999999998653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.49  E-value=0.00032  Score=63.36  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+||||||+|+.|++.++..++.
T Consensus        53 ILliGp~G~GKT~LAr~LAk~l~~~fi~   80 (443)
T PRK05201         53 ILMIGPTGVGKTEIARRLAKLANAPFIK   80 (443)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCChhee
Confidence            9999999999999999999999987654

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.49  E-value=0.0019  Score=50.49  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ++|+|.|+-.||||||++.||+.++....
T Consensus         9 K~VailG~ESsGKStLv~kLA~~fnt~~~   37 (187)
T COG3172           9 KTVAILGGESSGKSTLVNKLANIFNTTSA   37 (187)
T ss_pred             eeeeeecCcccChHHHHHHHHHHhCCCch
Confidence            45999999999999999999999997643

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.48  E-value=5.7e-05  Score=62.26  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~v~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          15 ALDDISFSVEKGEI--FGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45556667888877  9999999999999999999754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.48  E-value=6.3e-05  Score=60.16  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          15 ALDDISLTVEKGEI--YGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.48  E-value=7.6e-05  Score=59.33  Aligned_cols=37  Identities=19%  Similarity=0.066  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 ~l~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          16 LLKDLSFEIKPGDR--LLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             eeecCeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45666677888887  99999999999999999987653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.48  E-value=3.6e-05  Score=62.39  Aligned_cols=51  Identities=20%  Similarity=0.213  Sum_probs=38.5

Q ss_pred             HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +..++++|+......++.|.....|..  .+|.|++|+||||+.+.|+..+..
T Consensus         4 v~~l~K~y~~~v~AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiatlL~P   54 (245)
T COG4555           4 VTDLTKSYGSKVQAVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIATLLIP   54 (245)
T ss_pred             eeehhhhccCHHhhhhheeEEeccceE--EEEEcCCCCCchhHHHHHHHhccC
Confidence            344556665543345566677888876  999999999999999999998753

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.48  E-value=0.00027  Score=59.57  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=24.6

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++..+|+|+||||+||||+...|...+...
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~   56 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRER   56 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence            445679999999999999999999988754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.48  E-value=9.1e-05  Score=55.64  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=24.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.|.||+||||||+++.|+..+...
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCCC
Confidence            49999999999999999999998875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.47  E-value=6.3e-05  Score=62.44  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        20 VLKGVSLSIGKGEI--VAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55666777888887  99999999999999999987643

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.47  E-value=0.0001  Score=59.65  Aligned_cols=50  Identities=22%  Similarity=0.173  Sum_probs=39.9

Q ss_pred             HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++++.+.|+.. .++++.|..+.+|..  -+|.||+|+||||+...+++.++.
T Consensus         4 i~nv~K~y~~~-~vl~~isl~i~~g~i--Ts~IGPNGAGKSTLLS~~sRL~~~   53 (252)
T COG4604           4 IENVSKSYGTK-VVLDDVSLDIPKGGI--TSIIGPNGAGKSTLLSMMSRLLKK   53 (252)
T ss_pred             ehhhhHhhCCE-EeeccceeeecCCce--eEEECCCCccHHHHHHHHHHhccc
Confidence            45566677544 467778888888876  999999999999999999987764

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.47  E-value=6.6e-05  Score=63.20  Aligned_cols=36  Identities=19%  Similarity=0.112  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          17 ALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56666777888887  9999999999999999998865

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.47  E-value=6.1e-05  Score=72.73  Aligned_cols=51  Identities=18%  Similarity=0.061  Sum_probs=41.4

Q ss_pred             HHHHHHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         32 VEELLNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        32 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+++.-.|+.. +.++++.|.++.+|.+  |+|.|.+||||||++++|...+..
T Consensus       474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         474 FENVSFRYGPDDPPVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             EEEEEEEeCCCCcchhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhcCCCC
Confidence            33444466665 5588888899999998  999999999999999999887654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.46  E-value=7.2e-05  Score=63.83  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        27 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         27 HALKNINLDIAKNQV--TAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            356677778888887  9999999999999999999765

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.46  E-value=7.3e-05  Score=61.92  Aligned_cols=36  Identities=25%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence            56666677888887  9999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.46  E-value=7.6e-05  Score=62.38  Aligned_cols=37  Identities=19%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777888887  99999999999999999997654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.46  E-value=6.8e-05  Score=63.88  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999999865

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.46  E-value=6.9e-05  Score=60.21  Aligned_cols=36  Identities=19%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          15 VLNDVSLNIEAGEI--VALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45556667888887  9999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.46  E-value=7.5e-05  Score=62.33  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         22 ILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            56677778888887  9999999999999999998754

>PLN02840 tRNA dimethylallyltransferase

Probab=97.46  E-value=0.00013  Score=65.95  Aligned_cols=32  Identities=34%  Similarity=0.558  Sum_probs=27.2

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ..+.++|+|.||+||||||++..|++.++..+
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~i   49 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEI   49 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe
Confidence            33455799999999999999999999998653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.46  E-value=6.9e-05  Score=62.97  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        16 ALDDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence            55666777888887  9999999999999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.46  E-value=7.2e-05  Score=62.46  Aligned_cols=36  Identities=22%  Similarity=0.056  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        25 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         25 ILTGVELVVKRGET--IALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEeccEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCC
Confidence            56667777888877  9999999999999999999865

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.46  E-value=4.2e-05  Score=63.82  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 ~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          21 RILNDVSLHVESGQV--MAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             ccccCceEEEcCCeE--EEEECCCCCCHHHHHHHHhCccC
Confidence            456667777888877  99999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.45  E-value=7.6e-05  Score=63.35  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        21 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         21 ALHDISLEFEQNQV--TALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eecceeEEEeCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence            56667777888887  9999999999999999999764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=8.2e-05  Score=63.03  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         18 VLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence            55667777888887  99999999999999999998753

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.45  E-value=0.00016  Score=57.86  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.++|+|.|++||||||+++.|...+...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~   33 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR   33 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence            36689999999999999999999988753

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.45  E-value=0.00012  Score=56.18  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.|++|+|||++++.+++.++..++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            789999999999999999999987653

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.45  E-value=8.8e-05  Score=62.81  Aligned_cols=36  Identities=11%  Similarity=0.001  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         18 VLHGIDLEVKPGEV--VAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            56667777888887  9999999999999999999765

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.44  E-value=8.2e-05  Score=60.81  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+.....|..  .+|.||+|+||||+.+.|..++.
T Consensus        16 ll~~vsl~~~pGev--~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          16 LLDGVSLDLRPGEV--LAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             eccCcceeccCCcE--EEEECCCCccHHHHHHHhhCccC
Confidence            45666777888887  99999999999999999999877

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.44  E-value=9.3e-05  Score=63.60  Aligned_cols=36  Identities=22%  Similarity=0.127  Sum_probs=30.2

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++++.++..|..  +++.||+||||||+.+.+|....
T Consensus        18 ~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAGLe~   53 (345)
T COG1118          18 LDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAGLET   53 (345)
T ss_pred             cccceeeecCCcE--EEEECCCCCcHHHHHHHHhCcCC
Confidence            3356677888887  99999999999999999998543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.44  E-value=9.3e-05  Score=61.95  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             CCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         47 DQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        47 ~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus         3 ~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770         3 QDLNLSLKRGEV--LALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            345566778877  99999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.44  E-value=7e-05  Score=62.81  Aligned_cols=36  Identities=17%  Similarity=0.060  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         24 VLHNVSFSIGEGEM--MAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             eEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCC
Confidence            56666777888876  9999999999999999999764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.44  E-value=7.8e-05  Score=61.03  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            55667777888887  9999999999999999998754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.44  E-value=7.1e-05  Score=60.93  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=29.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.|....+|..  ++|.|++||||||+++.|+..
T Consensus        22 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          22 LLNNISGYVKPGTL--TALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eEEccEEEEeCCcE--EEEECCCCCCHHHHHHHHhCC
Confidence            55666777888877  999999999999999999863

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.43  E-value=8.3e-05  Score=62.70  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         17 ALFDITLDCPQGET--LVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.43  E-value=8.4e-05  Score=61.21  Aligned_cols=36  Identities=22%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         17 LFSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45666777888887  9999999999999999998754

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=9.2e-05  Score=61.64  Aligned_cols=40  Identities=20%  Similarity=0.010  Sum_probs=35.2

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      -..+++.|....+|..  |+|.|.+||||||+.+.|+..+..
T Consensus        40 ~~aL~disf~i~~Ge~--vGiiG~NGaGKSTLlkliaGi~~P   79 (249)
T COG1134          40 FWALKDISFEIYKGER--VGIIGHNGAGKSTLLKLIAGIYKP   79 (249)
T ss_pred             EEEecCceEEEeCCCE--EEEECCCCCcHHHHHHHHhCccCC
Confidence            4577888889999988  999999999999999999987653

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.43  E-value=7.2e-05  Score=60.08  Aligned_cols=36  Identities=25%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          17 VLKNLSLELKQGEK--IALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             ceEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            45556677888887  9999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.42  E-value=9.3e-05  Score=61.78  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          18 VLKDINFSIKPGET--VAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence            45566677888877  99999999999999999987653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.42  E-value=0.00012  Score=64.85  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+++|.||+||||||+++.|++.++.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345999999999999999999999876

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.42  E-value=0.0016  Score=63.05  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=26.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+|++.|.+|+||||+++.|+++++..++.
T Consensus       216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~  245 (664)
T PTZ00322        216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQ  245 (664)
T ss_pred             eeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence            369999999999999999999999877654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.42  E-value=9e-05  Score=61.85  Aligned_cols=37  Identities=22%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        36 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          36 WALKDVSFEVPRGER--IGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            367777788888887  9999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.42  E-value=0.0001  Score=61.79  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus         3 ~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         3 GVNLTIQQGEF--ISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             ceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            34456777776  99999999999999999987653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.42  E-value=8.4e-05  Score=61.15  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~~~~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          15 VLDDISLHVKKGEI--YGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence            45566677888877  9999999999999999998754

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.42  E-value=8.4e-05  Score=61.62  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          15 ATLSNINIRIPTGQL--TMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             cceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            355666677888877  9999999999999999999765

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.41  E-value=0.0001  Score=60.79  Aligned_cols=35  Identities=20%  Similarity=0.087  Sum_probs=28.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|....+| .  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vs~~i~~g-~--~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          15 ALDGVSLTLGPG-M--YGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EEcceeEEEcCC-c--EEEECCCCCCHHHHHHHHhCCC
Confidence            455666677776 4  9999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.41  E-value=8.3e-05  Score=63.38  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=28.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+ ...+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 ~l~~i~-~i~~Ge~--~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          16 KLHRLP-VPREGQV--LGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             hhhcCC-CCCCCCE--EEEECCCCCCHHHHHHHHhCCcC
Confidence            445555 3667776  99999999999999999998764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.41  E-value=8.8e-05  Score=63.21  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         19 AVEDVNLNIEPRSV--TAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhccC
Confidence            45666677888887  9999999999999999999865

>PRK10908 cell division protein FtsE; Provisional

Probab=97.40  E-value=9.2e-05  Score=61.59  Aligned_cols=36  Identities=14%  Similarity=0.039  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         17 ALQGVTFHMRPGEM--AFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45666677888887  9999999999999999998754

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=9.2e-05  Score=62.44  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888877  9999999999999999999865

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.40  E-value=9.5e-05  Score=59.61  Aligned_cols=37  Identities=14%  Similarity=0.054  Sum_probs=30.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          15 AVRDVSFEVRAGEI--VGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            34455567788877  99999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.40  E-value=3.3e-05  Score=67.19  Aligned_cols=48  Identities=23%  Similarity=0.178  Sum_probs=37.1

Q ss_pred             HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++...|++...++++.|..+.+|..  ++|.||+||||||+.+.|+..+.
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCcC
Confidence            3344454333467778888888876  99999999999999999998764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.40  E-value=8.6e-05  Score=63.00  Aligned_cols=37  Identities=16%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        15 VLDGLNFSVAAGEK--VALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55666777888887  99999999999999999987653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=9.7e-05  Score=63.33  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        35 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         35 RAVNDISMDIEKHAV--TALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             eeeeceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence            356777778888887  9999999999999999999854

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.39  E-value=0.00011  Score=58.62  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        17 ~l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          17 VLKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence            45556667888877  99999999999999999988654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.0001  Score=62.60  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         19 AVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence            56667777888887  9999999999999999999865

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.0001  Score=62.52  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         19 VIKGVDLKIPQNGV--FALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence            56667777888887  99999999999999999998753

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.39  E-value=0.0001  Score=62.30  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        16 ALKNINLDIPKNQV--TALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            45566677888887  9999999999999999999765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.39  E-value=0.00011  Score=60.96  Aligned_cols=36  Identities=17%  Similarity=0.031  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          19 VLKNISFSIKPGEK--VGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             cccceEEEECCCCE--EEEECCCCCCHHHHHHHHHcCC
Confidence            56667777888877  9999999999999999998764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.39  E-value=0.0001  Score=62.50  Aligned_cols=37  Identities=22%  Similarity=0.056  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        18 GCRDVSFDLYPGEV--LGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EeecceEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999998653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.39  E-value=0.00011  Score=60.94  Aligned_cols=36  Identities=22%  Similarity=0.096  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+...
T Consensus        19 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          19 ALDNVSLTIRAGEK--VAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCc
Confidence            45566677888887  9999999999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.39  E-value=9.9e-05  Score=62.14  Aligned_cols=37  Identities=22%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777888877  99999999999999999998653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.39  E-value=0.0001  Score=58.98  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          17 VLRNVSFSIEPGES--LAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHhccC
Confidence            44555667778776  99999999999999999997653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.39  E-value=9.5e-05  Score=58.57  Aligned_cols=36  Identities=19%  Similarity=0.097  Sum_probs=30.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.+....+|..  ++|.|++||||||+.+.|+..+
T Consensus        15 vl~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          15 ALDGVSLSVRRGEV--HALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45556667888887  9999999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.38  E-value=9.5e-05  Score=63.09  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        27 il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         27 VLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666677888877  99999999999999999998653

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.38  E-value=0.00014  Score=63.45  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=26.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .++|+|.||+||||||++..|++.++...+
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~ii   33 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEII   33 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEE
Confidence            356999999999999999999999987644

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.0001  Score=63.25  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         16 VLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCC
Confidence            56667777888877  99999999999999999987653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.38  E-value=0.0001  Score=60.22  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        15 LFEGLSFTLNAGEA--LQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998765

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.38  E-value=0.00012  Score=59.89  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..
T Consensus        15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCC
Confidence            56667778888887  999999999999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.38  E-value=0.00011  Score=60.28  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         16 LFSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EEecceEEECCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45667777888877  99999999999999999987653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.38  E-value=9.7e-05  Score=62.29  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          16 AVNNLNLEIAKGEF--LVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             EeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45666777888887  99999999999999999987653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.38  E-value=0.0001  Score=62.14  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55667777888887  99999999999999999998653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.37  E-value=0.00011  Score=63.35  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         16 ILRDLSLRIEPGRV--TALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56667777888887  99999999999999999998653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.37  E-value=0.00011  Score=61.76  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          18 ILKGLSLTIPPGKT--VALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             ceeceEEEecCCCE--EEEEeCCCCCHHHHHHHHhccCC
Confidence            45566677888877  99999999999999999998753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.37  E-value=0.00011  Score=61.70  Aligned_cols=37  Identities=19%  Similarity=0.105  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          17 ILDNISLRIKPGEV--VGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence            45566667788877  99999999999999999997653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.37  E-value=0.00013  Score=59.97  Aligned_cols=36  Identities=22%  Similarity=0.071  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            45666677888887  9999999999999999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.37  E-value=0.00012  Score=61.01  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        23 VLKNVSLTVNAGEC--VALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             EEecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56667777888887  99999999999999999987653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00013  Score=61.97  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=32.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         22 ALNNINIKILKNSI--TALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             eecceeeEEcCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence            56667778888887  99999999999999999998654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00014  Score=59.99  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.++..|.....|..  -+|.||+||||||++..|+..=+
T Consensus        18 eILkgvnL~v~~GEv--haiMGPNGsGKSTLa~~i~G~p~   55 (251)
T COG0396          18 EILKGVNLTVKEGEV--HAIMGPNGSGKSTLAYTIMGHPK   55 (251)
T ss_pred             hhhcCcceeEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            345566667888877  99999999999999999987543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.36  E-value=0.00011  Score=61.78  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        35 ~il~~vs~~i~~Ge~--~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          35 EALKGISFTIEKGEI--VGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             eeeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCc
Confidence            366777778888887  9999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00017  Score=57.55  Aligned_cols=47  Identities=28%  Similarity=0.262  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563         30 PEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~   79 (259)
                      -++.++.+.|. ..++++..|....+|..  |.|.|.+||||||+.+.+.
T Consensus         7 l~v~dlHK~~G-~~eVLKGvSL~A~~GdV--isIIGsSGSGKSTfLRCiN   53 (256)
T COG4598           7 LEVEDLHKRYG-EHEVLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCIN   53 (256)
T ss_pred             eehhHHHhhcc-cchhhcceeeecCCCCE--EEEecCCCCchhHHHHHHH
Confidence            35667777774 55788888888888876  9999999999999998873

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00011  Score=63.05  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        28 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         28 AVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EEcceEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            56677778888887  9999999999999999999764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.36  E-value=0.00013  Score=60.90  Aligned_cols=36  Identities=17%  Similarity=0.066  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        29 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          29 VLQDVSFTLHPGEV--TALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCc
Confidence            56667777888887  9999999999999999998765

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.36  E-value=0.00012  Score=62.59  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=31.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769        26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56677778888887  99999999999999999998653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00011  Score=62.75  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        27 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         27 ALKNINLSIPENEV--TAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             eEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence            55666677888887  99999999999999999998653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.36  E-value=8.8e-05  Score=60.89  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 il~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          22 ILKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             eeeeEEEEECCCcE--EEEECCCCCCHHHHHHHhcccCC
Confidence            45566667888877  99999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.36  E-value=0.00011  Score=61.54  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          16 VLKDVSFTIPAGKK--VAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            45566677888887  9999999999999999999765

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.36  E-value=0.00012  Score=60.03  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 il~~~s~~i~~G~~--~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          20 TLKDINLEVPKGEL--VAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             eeeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCcCC
Confidence            56667777888887  99999999999999999988653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.36  E-value=0.00011  Score=62.72  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         21 GCRDVSFDLYPGEV--LGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             eeeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666677888887  99999999999999999998653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.35  E-value=0.00012  Score=61.39  Aligned_cols=37  Identities=16%  Similarity=0.078  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          17 VLRDISLDIPAGET--VALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence            45556667788877  99999999999999999988653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00011  Score=61.76  Aligned_cols=40  Identities=20%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...+++.|..+.+|..  ++|.|++||||||+++.|+.-+..
T Consensus        17 ~~~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~GLl~p   56 (235)
T COG1122          17 KAALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNGLLKP   56 (235)
T ss_pred             ceeeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCcCcC
Confidence            3456667777888887  999999999999999999876543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.35  E-value=0.00056  Score=58.69  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=28.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ...|+..+|+|+|+||+||||+...|...|-..
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~   78 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRER   78 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence            455667789999999999999999999988654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.35  E-value=9.8e-05  Score=57.28  Aligned_cols=36  Identities=25%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~~~~~~~~Ge~--~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          15 LLKDISLTINPGDR--IGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence            34455567788876  9999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00011  Score=64.36  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 ~l~~vsl~i~~Ge~--v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         22 ALDNVSVEINQGEF--IAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence            56667778888887  9999999999999999999764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.35  E-value=0.00012  Score=58.93  Aligned_cols=36  Identities=28%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        14 ~l~~~~~~i~~G~~--~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          14 VLDDLSLSIEAGEI--VGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             eEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45556667788877  9999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00011  Score=63.01  Aligned_cols=37  Identities=19%  Similarity=0.063  Sum_probs=31.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         25 TLLHPLSLTFPAGKV--TGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence            356677778888887  9999999999999999999765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.00012  Score=62.08  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..
T Consensus        20 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         20 ALNSVSLDFYPNEI--TALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcc
Confidence            55666677888887  999999999999999999875

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.34  E-value=0.00012  Score=62.53  Aligned_cols=37  Identities=22%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         17 LLDDVSLTLRPGEV--VAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56667777888887  99999999999999999998653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00013  Score=61.86  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+...
T Consensus        20 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         20 ALKGIDLDFNQNEI--TALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            56667777888887  9999999999999999998753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00012  Score=61.95  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         18 ALKKINLDIEENQV--TALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            45566677888887  9999999999999999999753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00012  Score=62.02  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         18 AVKNVTMKIFKNQI--TAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             eEeeeeEeecCCCE--EEEECCCCCCHHHHHHHHhcccc
Confidence            45566677888887  99999999999999999997543

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.34  E-value=0.00014  Score=59.56  Aligned_cols=36  Identities=17%  Similarity=0.030  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus        15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00012  Score=61.95  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         19 ALHGISLDFEEKEL--TALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhhcc
Confidence            55666677888887  9999999999999999999865

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.34  E-value=0.00011  Score=63.33  Aligned_cols=37  Identities=16%  Similarity=-0.004  Sum_probs=31.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56667778888887  99999999999999999997653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.33  E-value=0.00011  Score=63.59  Aligned_cols=38  Identities=26%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 ~~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         21 QAIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             CceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            366777778888887  99999999999999999997643

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.33  E-value=0.00012  Score=62.80  Aligned_cols=37  Identities=22%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        24 ~l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         24 TLKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45666677888887  99999999999999999998653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.33  E-value=0.00057  Score=60.29  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+...+|+|+|++||||||++..|...+...
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~   83 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ   83 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3446679999999999999999998887653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.33  E-value=0.00012  Score=63.85  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        19 VVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56677778888887  9999999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.33  E-value=0.00013  Score=61.85  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         22 ILKGLNLSINKGEI--HAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eeecceeEEcCCcE--EEEECCCCCCHHHHHHHHcCC
Confidence            56667777888887  999999999999999999874

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.33  E-value=0.00012  Score=63.88  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus         8 ~l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188         8 AVDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777888877  99999999999999999998653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.33  E-value=0.00011  Score=63.32  Aligned_cols=36  Identities=25%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         22 ALFDVNLTIEDGSY--TAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888877  9999999999999999999865

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.00015  Score=62.04  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..++
T Consensus        24 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         24 LAVKNVWLDIPKNQI--TAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             EEeecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhc
Confidence            356677778888887  99999999999999999997543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00011  Score=62.98  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        34 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         34 ALFDVDLDIPEKTV--TAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence            56667778888887  99999999999999999998763

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00012  Score=62.78  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        34 ~il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         34 EAIKGIDMQFEKNKI--TALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             eeEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence            356667778888887  9999999999999999999865

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00015  Score=61.40  Aligned_cols=37  Identities=14%  Similarity=0.162  Sum_probs=31.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         18 QAVKNVNLDVQRGTV--NALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             EeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            356677777888887  9999999999999999999875

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=97.32  E-value=0.0046  Score=48.42  Aligned_cols=73  Identities=19%  Similarity=0.239  Sum_probs=36.6

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH--HHHHHHhc---C-CCCeEEEeCCCCCHhhHHHHHHH
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL--LTTIYRNM---N-NPELVFVDNSEKSVHESSNDIVE  247 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~--~~~~y~~~---~-~~~~~vID~s~~~~eev~~~I~~  247 (259)
                      ..++.|||+|+++++.+|-.+..........++.-......  ..+..++.   . .+.-++||+++.+++++++.|.+
T Consensus        79 dA~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~il~  157 (157)
T PF02224_consen   79 DADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKILE  157 (157)
T ss_dssp             T-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHHhC
Confidence            35789999999999988864432110011111111111111  11111111   1 12469999999999999998864

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.32  E-value=0.00014  Score=60.16  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        26 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         26 VFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             eeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhCCC
Confidence            55667777888887  9999999999999999998764

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.32  E-value=0.00011  Score=62.44  Aligned_cols=36  Identities=22%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 vl~~vs~~i~~Ge~--~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         19 VLSDVSLELKPGKI--LTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEEeEEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999999865

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00012  Score=64.72  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 ~~l~~vsl~i~~Ge~--~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         21 RAVDRISYSVKQGEV--VGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EEEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence            357778888999887  99999999999999999998764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00011  Score=63.14  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         22 ALRDASFTVPGGSI--AALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            55666777888877  9999999999999999998764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00015  Score=61.36  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         18 ALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             eeecceEEecCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence            56667777888887  99999999999999999998654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00013  Score=61.69  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+....+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         16 QALFDINMQIEQNKI--TALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            356667777888887  9999999999999999999864

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.31  E-value=0.00015  Score=62.22  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~   64 (267)
T PRK15112         28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIE   64 (267)
T ss_pred             eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhCCCC
Confidence            56667778888887  99999999999999999998653

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00013  Score=61.87  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+...
T Consensus        21 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         21 ALYDITISIPKNRV--TALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             eeeeeEEEECCCcE--EEEECCCCCCHHHHHHHHhccc
Confidence            56666777888887  9999999999999999999653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00012  Score=62.19  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         20 AVNNVNLEVREQEI--VSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             EEEeeeeEEcCCeE--EEEECCCCCCHHHHHHHHhCCcC
Confidence            45566677888877  99999999999999999998653

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00013  Score=65.13  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|....+|.+  ++|.|++||||||+++.|+....
T Consensus        21 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~   57 (351)
T PRK11432         21 VIDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAGLEK   57 (351)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCC
Confidence            45566677888887  99999999999999999998653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.30  E-value=0.00013  Score=65.12  Aligned_cols=37  Identities=30%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.|++||||||+.+.|+....
T Consensus        19 ~l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaGl~~   55 (356)
T PRK11650         19 VIKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAGLER   55 (356)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCC
Confidence            45566677888887  99999999999999999998643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.30  E-value=0.00011  Score=62.96  Aligned_cols=37  Identities=19%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         22 IFDNISLTVPRGKI--TAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666777888887  99999999999999999997653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.30  E-value=0.00011  Score=63.48  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 ~l~~v~l~i~~Ge~--~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         22 ALNDISFSIPRGSW--TALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhccc
Confidence            55666677888887  9999999999999999999876

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.30  E-value=0.00013  Score=63.05  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   57 (279)
T PRK13650         22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDGLL   57 (279)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            56667778888887  9999999999999999999865

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.30  E-value=0.00012  Score=63.37  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56667778888887  99999999999999999997653

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.30  E-value=0.00015  Score=61.32  Aligned_cols=36  Identities=22%  Similarity=0.081  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         16 ILRGLNLEVRPGEV--HAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCc
Confidence            45566677888877  9999999999999999999863

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.30  E-value=0.00016  Score=58.92  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus        23 ~~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          23 QLLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            356666677888877  9999999999999999998765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.29  E-value=0.0003  Score=62.57  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=37.2

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCC--CchHHHHHHhcc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP--SSIMSLREKFDA  103 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~--~~~~~~~~~~~~  103 (259)
                      ..+..+-.++-||||+||||+|+.||...+..+.....  .....+++.+.+
T Consensus        44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~   95 (436)
T COG2256          44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE   95 (436)
T ss_pred             hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence            33445558899999999999999999999988765433  234667766654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.29  E-value=0.00015  Score=68.88  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+++.-.|++...++++.|..+.+|..  ++|.|++||||||++++|.+.+..
T Consensus       331 f~~vsf~y~~~~~vl~~is~~i~~Ge~--vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         331 FENVSFSYPGKKPVLKDISFSIEPGEK--VAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             EEEEEEEcCCCCccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCC
Confidence            444555665545677888888999888  999999999999999999998775

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00014  Score=62.01  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        27 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         27 ALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            56667777888887  9999999999999999999754

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.29  E-value=0.00014  Score=63.13  Aligned_cols=36  Identities=22%  Similarity=0.115  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCC
Confidence            56677778888887  9999999999999999999764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.29  E-value=0.00013  Score=63.29  Aligned_cols=37  Identities=22%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        26 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         26 ALNNTSLTFKKNKV--TCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            56667777888877  99999999999999999998653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00016  Score=61.33  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         19 ALNDINLPIYENKI--TALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHHhcc
Confidence            45666677888887  9999999999999999999764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00014  Score=62.44  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=36.4

Q ss_pred             HHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         32 VEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++...|+. ...+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        27 ~~~l~~~~~~-~~il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         27 TQNLNLWYGE-DHALKNINLDIHENEV--TAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             EeeeEEEECC-cceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcc
Confidence            3444434432 2356667777888887  99999999999999999998753

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.29  E-value=0.00016  Score=61.52  Aligned_cols=37  Identities=22%  Similarity=0.112  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         18 LVHGVSLTLQRGRV--LALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999988653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.28  E-value=0.00016  Score=61.81  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         19 ALHAVDLNIHHGEM--VALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             EEecceEEEcCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence            45666777888887  99999999999999999997653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.28  E-value=0.00014  Score=61.62  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.|....+|..  ++|.|++||||||+++.|+..
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         18 ALKGISMEIEEKSV--VAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EEeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhhh
Confidence            45556667888877  999999999999999999875

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.28  E-value=0.00011  Score=62.92  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             hccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         41 RINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .....+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        35 ~~~~il~~is~~i~~Ge~--~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         35 KTFFALDDISLKAYEGDV--IGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             CceEEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcC
Confidence            334456667778888887  99999999999999999998653

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.28  E-value=0.00015  Score=61.43  Aligned_cols=36  Identities=22%  Similarity=0.130  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+...
T Consensus        20 ~l~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         20 ILFDINLDIYKREV--TAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhc
Confidence            45566677888887  9999999999999999999864

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.28  E-value=0.00016  Score=61.93  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253         22 VAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             EeeecceEECCCCE--EEEECCCCCCHHHHHHHHcCCCC
Confidence            56677778888887  99999999999999999988653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.27  E-value=0.00016  Score=61.60  Aligned_cols=37  Identities=24%  Similarity=0.181  Sum_probs=31.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 il~~isl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         22 AIEGISMDIYRNKV--TAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcC
Confidence            55667777888887  99999999999999999998654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.27  E-value=0.00016  Score=60.97  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus        17 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        17 ALNDLSLYVDPGEL--RVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            56667777888887  9999999999999999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.27  E-value=0.00016  Score=62.07  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        26 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         26 TVLNNVSLSLKSGET--VALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             eeEeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            356667778888877  9999999999999999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.27  E-value=0.00014  Score=61.16  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         20 ALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcCCC
Confidence            55666777888887  9999999999999999998754

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.27  E-value=0.00014  Score=65.30  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         18 ISKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence            45566677888877  9999999999999999999865

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.27  E-value=0.00017  Score=61.19  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 il~~~s~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         19 VLKNINMDFPERQI--TAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             EecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccC
Confidence            45666677888887  99999999999999999998654

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.27  E-value=0.00015  Score=64.14  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=32.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         22 AVDRVSMTLTEGEI--RGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHccCC
Confidence            56777788899887  99999999999999999998763

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.27  E-value=0.00016  Score=62.18  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666677888877  99999999999999999998753

>KOG2004|consensus

Probab=97.27  E-value=0.00039  Score=65.87  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=46.5

Q ss_pred             cHHHHHHHHHh-hc--cCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         13 SLVSVLSILKS-AQ--YSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        13 ~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      +...++++|+. |.  .|++.++.++...-.-.         ...  +.+|+++.||||.|||++++.+|+.|+-.+++.
T Consensus       401 dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr---------gs~--qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf  469 (906)
T KOG2004|consen  401 DLARAKEILDEDHYGMEDVKERILEFIAVGKLR---------GSV--QGKILCFVGPPGVGKTSIAKSIARALNRKFFRF  469 (906)
T ss_pred             hHHHHHHhhcccccchHHHHHHHHHHHHHHhhc---------ccC--CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence            45667777777 22  55666666555432211         122  256799999999999999999999999888765


Q ss_pred             C
Q psy16563         90 P   90 (259)
Q Consensus        90 p   90 (259)
                      .
T Consensus       470 S  470 (906)
T KOG2004|consen  470 S  470 (906)
T ss_pred             e
Confidence            3

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.27  E-value=0.00018  Score=59.35  Aligned_cols=33  Identities=18%  Similarity=0.041  Sum_probs=28.0

Q ss_pred             CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          16 HFDLTFAQGEI--TAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             ceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            44566778876  9999999999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.27  E-value=0.00015  Score=62.83  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~Gl~~   58 (287)
T PRK13641         22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNALLK   58 (287)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            56677778888887  99999999999999999997643

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.26  E-value=0.00017  Score=61.10  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...++.|..+.+|..  ++|.|.+||||||+++.|.+...
T Consensus        27 ~avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~L~~   64 (268)
T COG4608          27 KAVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILGLEE   64 (268)
T ss_pred             EEecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHcCcC
Confidence            345667788899888  99999999999999999988665

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.26  E-value=0.00016  Score=60.11  Aligned_cols=36  Identities=19%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        15 AVNNISLTVPKNSV--YGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45566667788877  9999999999999999999865

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.00027  Score=55.23  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=24.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +-|+|+|+||+||||++..+++.+...
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            349999999999999999999998765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.25  E-value=0.00015  Score=64.41  Aligned_cols=38  Identities=18%  Similarity=0.050  Sum_probs=32.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+....
T Consensus        19 ~~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~gl~~   56 (343)
T TIGR02314        19 QALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLER   56 (343)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            467777788888887  99999999999999999988654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.25  E-value=0.00014  Score=64.67  Aligned_cols=37  Identities=16%  Similarity=0.035  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 il~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~Gl~~   56 (343)
T PRK11153         20 ALNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINLLER   56 (343)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            56667778888887  99999999999999999998653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.25  E-value=0.00015  Score=62.97  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56677778888887  99999999999999999987643

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.25  E-value=0.00074  Score=57.69  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      -++|.||+||||||+|+.+++.+.
T Consensus        44 ~vll~GppGtGKTtlA~~ia~~l~   67 (261)
T TIGR02881        44 HMIFKGNPGTGKTTVARILGKLFK   67 (261)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHH
Confidence            389999999999999999999874

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.24  E-value=0.00015  Score=70.70  Aligned_cols=44  Identities=16%  Similarity=0.099  Sum_probs=36.1

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|+....++++.|..+.+|..  |+|.|++||||||+++.|+..+.
T Consensus       482 ~y~~~~~iL~~isl~i~~G~~--vaIvG~SGsGKSTLlklL~gl~~  525 (708)
T TIGR01193       482 SYGYGSNILSDISLTIKMNSK--TTIVGMSGSGKSTLAKLLVGFFQ  525 (708)
T ss_pred             EcCCCCcceeceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCC
Confidence            444334567788888888888  99999999999999999998765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.24  E-value=0.00017  Score=62.02  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        35 ~l~~vs~~i~~Ge~--~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         35 ALVDVHLKIPAKKI--IAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            56667778888887  9999999999999999999754

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.24  E-value=0.00017  Score=62.15  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   53 (274)
T PRK13644         17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            56677778888887  99999999999999999998653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.24  E-value=0.00017  Score=62.34  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=31.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56667778888887  99999999999999999997653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.24  E-value=0.00016  Score=61.45  Aligned_cols=37  Identities=22%  Similarity=0.180  Sum_probs=31.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCC
Confidence            56677777888887  99999999999999999988653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.23  E-value=0.00037  Score=52.46  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPP   91 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~   91 (259)
                      +|++.|.-||||||+++.+++.+|.. .+.+|.
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPT   49 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPT   49 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT--S----TT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCC
Confidence            49999999999999999999999875 344444

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.23  E-value=0.00018  Score=60.91  Aligned_cols=29  Identities=28%  Similarity=0.300  Sum_probs=24.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 i~~Ge~--~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          22 ISESEV--IGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             cCCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence            445555  99999999999999999998653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.23  E-value=0.00033  Score=54.15  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |+|.|.|+.||||||+++.|...+...
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~   27 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRR   27 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence            579999999999999999999998754

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=97.23  E-value=0.00018  Score=60.94  Aligned_cols=36  Identities=22%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        11 ~l~~vsl~i~~Gei--~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         11 RLGPLSAEVRAGEI--LHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCC
Confidence            34556667888876  9999999999999999998754

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.23  E-value=0.00016  Score=62.31  Aligned_cols=37  Identities=22%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~   55 (277)
T PRK13652         19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNGILK   55 (277)
T ss_pred             eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            56667778888887  99999999999999999998653

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.23  E-value=0.00015  Score=64.71  Aligned_cols=37  Identities=16%  Similarity=0.086  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~   53 (353)
T PRK10851         17 VLNDISLDIPSGQM--VALLGPSGSGKTTLLRIIAGLEH   53 (353)
T ss_pred             EEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999998653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.23  E-value=0.00018  Score=61.25  Aligned_cols=37  Identities=22%  Similarity=0.091  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         20 VLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45666677888887  99999999999999999998653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.23  E-value=0.00018  Score=60.51  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+
T Consensus        15 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        15 ALDDVNLEVPTGSL--VALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             eeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            55666677888887  9999999999999999999764

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.22  E-value=0.00018  Score=62.06  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.+..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   61 (280)
T PRK13633         25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNALLI   61 (280)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            66677778888887  99999999999999999997644

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.22  E-value=0.00017  Score=63.45  Aligned_cols=38  Identities=21%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        40 ~~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~Gl~~   77 (320)
T PRK13631         40 VALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIK   77 (320)
T ss_pred             cceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            367777788888887  99999999999999999998653

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.22  E-value=0.0021  Score=48.38  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             ccccHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         10 QYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |-.+.....+.|+..-..+--..+.+.+++.+--.       .....++-++.+-|++|+|||.++++||+.+=.
T Consensus        12 i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~-------~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~   79 (127)
T PF06309_consen   12 IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLA-------NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK   79 (127)
T ss_pred             CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHc-------CCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence            34566677777777444444444444454443211       123344556889999999999999999998533

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PLN02796 D-glycerate 3-kinase

Probab=97.22  E-value=0.00029  Score=62.10  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+|+|.|++||||||+++.|...+..
T Consensus       100 pliIGI~G~sGSGKSTLa~~L~~lL~~  126 (347)
T PLN02796        100 PLVIGISAPQGCGKTTLVFALVYLFNA  126 (347)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            457999999999999999999998864

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.22  E-value=0.00017  Score=64.85  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|.+  ++|.|++||||||+.+.|+..+.
T Consensus        29 ~l~~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaGl~~   65 (375)
T PRK09452         29 VISNLDLTINNGEF--LTLLGPSGCGKTTVLRLIAGFET   65 (375)
T ss_pred             EEeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999998643

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.21  E-value=0.00032  Score=56.05  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++|.|.|++||||||+|..++..++..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~   28 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQ   28 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence            359999999999999999999987754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.21  E-value=0.00019  Score=63.48  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        29 ~~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~gl~~   66 (327)
T PRK11308         29 KALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTMIET   66 (327)
T ss_pred             eEEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHcCCC
Confidence            356677788888887  99999999999999999988653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.21  E-value=0.00019  Score=61.01  Aligned_cols=36  Identities=28%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         17 ILNDLSLSLPTGKI--TALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             EEeeeeeEEcCCcE--EEEECCCCCCHHHHHHHHhCCc
Confidence            56666777888877  9999999999999999998754

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.21  E-value=0.00024  Score=56.26  Aligned_cols=48  Identities=21%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             HHHHHHHHhhhc---cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         31 EVEELLNIYSRI---NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        31 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +++.+....+..   -.++++.+....+|..  |+|.|++||||||+...||.
T Consensus         8 ~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~--vaiVG~SGSGKSTLl~vlAG   58 (228)
T COG4181           8 EVHHLSKTVGQGEGELSILKGVELVVKRGET--VAIVGPSGSGKSTLLAVLAG   58 (228)
T ss_pred             ehhhhhhhhcCCCcceeEeecceEEecCCce--EEEEcCCCCcHHhHHHHHhc
Confidence            344444444332   3355666677888888  99999999999999999986

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.21  E-value=0.0002  Score=61.69  Aligned_cols=48  Identities=21%  Similarity=0.102  Sum_probs=36.2

Q ss_pred             HHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++...|+. ...+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        25 ~nl~~~~~~-~~il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         25 VNLTLGFAG-KTVLDQVSMGFPARAV--TSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             eeEEEEECC-EEEeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence            344444543 2356677778888887  99999999999999999987653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.21  E-value=0.00021  Score=58.19  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         19 LSITFLPSAI--TYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             EEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            4456777776  99999999999999999988653

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.21  E-value=0.00019  Score=62.16  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        53 ~il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         53 QALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             eeEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            356777778888887  9999999999999999999765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.20  E-value=0.00025  Score=57.00  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=25.4

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          21 VVKEGEV--IGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             EECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence            4566666  99999999999999999988653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.20  E-value=0.00025  Score=58.97  Aligned_cols=52  Identities=19%  Similarity=0.115  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +-+++.+...+. ...++++.+....+|..  .+|.|++||||||+.+.+...+.
T Consensus         8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~Gll~   59 (263)
T COG1127           8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILGLLR   59 (263)
T ss_pred             eEEEeeeeeecC-CEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhccCC
Confidence            445556666663 34578888888999887  99999999999999999987654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.20  E-value=0.00017  Score=64.31  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.||+||||||+.+.|+....
T Consensus        19 ~l~~vs~~i~~Ge~--~~l~GpsGsGKSTLLr~iaGl~~   55 (353)
T TIGR03265        19 ALKDISLSVKKGEF--VCLLGPSGCGKTTLLRIIAGLER   55 (353)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCC
Confidence            34556667778877  99999999999999999998643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.20  E-value=0.00018  Score=61.91  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45666777888887  9999999999999999998765

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.20  E-value=0.00057  Score=63.88  Aligned_cols=29  Identities=31%  Similarity=0.667  Sum_probs=25.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .+++|.||+||||||.++.||+.++..+.
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            36999999999999999999999997643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.20  E-value=0.00018  Score=62.29  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..
T Consensus        54 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         54 AVKKVNADILSKYV--TAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcc
Confidence            56677777888887  999999999999999999874

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.20  E-value=0.00021  Score=62.51  Aligned_cols=38  Identities=18%  Similarity=0.057  Sum_probs=32.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.||+||||||+.+.|+..+.
T Consensus        21 ~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         21 LVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             EEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            356677778888886  99999999999999999998653

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.20  E-value=0.00025  Score=59.26  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      ..+++.|....+|..  ++|.|++||||||++
T Consensus         9 ~~l~~vsl~i~~Ge~--~~l~G~sGsGKSTL~   38 (226)
T cd03270           9 HNLKNVDVDIPRNKL--VVITGVSGSGKSSLA   38 (226)
T ss_pred             hccccceeecCCCcE--EEEEcCCCCCHHHHH
Confidence            355667778898887  999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.20  E-value=0.00018  Score=68.57  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .|+.....+++.+..+.+|..  |+|.|++||||||+++.|...+..
T Consensus       349 ~y~~~~~il~~i~l~i~~Ge~--iaIvG~SGsGKSTLl~lL~gl~~p  393 (592)
T PRK10790        349 AYRDDNLVLQNINLSVPSRGF--VALVGHTGSGKSTLASLLMGYYPL  393 (592)
T ss_pred             EeCCCCceeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCC
Confidence            443333467778888888888  999999999999999999987754

>KOG0055|consensus

Probab=97.19  E-value=7.3e-05  Score=74.73  Aligned_cols=55  Identities=18%  Similarity=0.091  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHhhhcc--ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         29 LPEVEELLNIYSRIN--ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        29 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ..+.+++..+|+.++  .++++.|.....|++  ++|.|++||||||+..+|.+.+...
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~--valVG~SGsGKST~i~LL~RfydP~  406 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT--VALVGPSGSGKSTLIQLLARFYDPT  406 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCC
Confidence            344556666888887  577778888898888  9999999999999999999987643

>KOG0730|consensus

Probab=97.19  E-value=0.00092  Score=62.79  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS   92 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~   92 (259)
                      |.+.||+||||||+|+.+|..-+..++..++.
T Consensus       471 VLlyGPPGC~KT~lAkalAne~~~nFlsvkgp  502 (693)
T KOG0730|consen  471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGP  502 (693)
T ss_pred             EEEECCCCcchHHHHHHHhhhhcCCeeeccCH
Confidence            99999999999999999999999998876553

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.19  E-value=0.00024  Score=61.23  Aligned_cols=37  Identities=19%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 ~l~~isl~I~~Ge~--~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          19 VLENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcC
Confidence            56677778888887  99999999999999999998764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.19  E-value=0.00022  Score=59.78  Aligned_cols=33  Identities=21%  Similarity=0.157  Sum_probs=27.6

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        18 is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         18 FDLTVERGER--VAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             eEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            4456777776  99999999999999999987643

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.19  E-value=0.00022  Score=59.19  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=30.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|....+|..  ++|.|++||||||+++.|+..+
T Consensus        20 il~~vs~~i~~G~~--~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982        20 VLFDINLEINPGEI--VILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45666677888877  9999999999999999998654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PF13245 AAA_19: Part of AAA domain

Probab=97.19  E-value=0.00044  Score=47.53  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKS-HTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gks-t~~~~l~~~~   82 (259)
                      +.+|.||+||||| |+++.+++.+
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            3778999999999 5566666655

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.19  E-value=0.00023  Score=60.82  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=31.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~   58 (261)
T PRK14258         22 ILEGVSMEIYQSKV--TAIIGPSGCGKSTFLKCLNRMNE   58 (261)
T ss_pred             EeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccC
Confidence            55667777888887  99999999999999999998754

>PLN02748 tRNA dimethylallyltransferase

Probab=97.19  E-value=0.00034  Score=64.32  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ..++.++|+|.||+||||||++..||+.++...+.
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~   52 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIIN   52 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEc
Confidence            34456689999999999999999999999876543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.18  E-value=0.00019  Score=68.43  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .|+....++++.+....+|..  |+|.|++||||||+++.|...+..
T Consensus       343 ~y~~~~~iL~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~p  387 (588)
T PRK13657        343 SYDNSRQGVEDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQRVFDP  387 (588)
T ss_pred             EeCCCCceecceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCcCC
Confidence            444333467778888888887  999999999999999999987653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.18  E-value=0.00021  Score=64.05  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+..|.+  ++|.||+||||||+.+.|+...
T Consensus        20 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~   55 (362)
T TIGR03258        20 VLDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            45666777888887  9999999999999999999754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.18  E-value=0.00017  Score=68.74  Aligned_cols=37  Identities=16%  Similarity=0.079  Sum_probs=32.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .++++.|..+.+|..  ++|.|++||||||++++|...+
T Consensus       364 ~vL~~i~l~i~~G~~--vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        364 TLAGPLNFTLPAGQR--IALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            467777778888888  9999999999999999999876

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=97.17  E-value=0.00028  Score=59.10  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        15 il~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~g~~~   51 (232)
T cd03300          15 ALDGVSLDIKEGEF--FTLLGPSGCGKTTLLRLIAGFET   51 (232)
T ss_pred             eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45566677888877  99999999999999999998754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.17  E-value=0.00017  Score=65.88  Aligned_cols=69  Identities=16%  Similarity=0.025  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHHhh----------ccCChHHHHHHHHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         12 PSLVSVLSILKSA----------QYSSLPEVEELLNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        12 ~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+|+.+.+.|+..          .++..-.++.+.-.=++. ..++++.|....+|..  ++|.||+||||||+++.|..
T Consensus       307 ~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG  384 (580)
T COG4618         307 QSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVG  384 (580)
T ss_pred             HHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce--EEEECCCCccHHHHHHHHHc
Confidence            4677777777661          122222233333222332 2455667777888887  99999999999999999976


Q ss_pred             Hh
Q psy16563         81 KL   82 (259)
Q Consensus        81 ~~   82 (259)
                      -.
T Consensus       385 ~w  386 (580)
T COG4618         385 IW  386 (580)
T ss_pred             cc
Confidence            53

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.17  E-value=0.00022  Score=61.34  Aligned_cols=38  Identities=21%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        39 ~il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         39 QALFDISMRIPKNRV--TAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             eEeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence            356667777888887  99999999999999999998653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.17  E-value=0.00035  Score=57.18  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.||+||||||++..|...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4999999999999999998888763

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.17  E-value=0.00023  Score=61.59  Aligned_cols=38  Identities=21%  Similarity=0.081  Sum_probs=32.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 ~~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636         20 HALKGININIKKGEV--TAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            366677778888887  99999999999999999998653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.17  E-value=0.00022  Score=63.33  Aligned_cols=50  Identities=14%  Similarity=0.126  Sum_probs=38.0

Q ss_pred             HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++++...|+.. ..+++.|..+.+|..  ++|.||+||||||+.+.|+..+.
T Consensus        43 ~i~nl~k~y~~~-~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~Gl~~   92 (340)
T PRK13536         43 DLAGVSKSYGDK-AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILGMTS   92 (340)
T ss_pred             EEEEEEEEECCE-EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence            344455555432 367777778888887  99999999999999999998653

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.17  E-value=0.00023  Score=60.95  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        30 ~vl~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         30 QALKNINMMVHEKQV--TALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccc
Confidence            356667777888887  9999999999999999998754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.17  E-value=0.00024  Score=61.44  Aligned_cols=37  Identities=14%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        52 vL~~vs~~i~~Ge~--~~liG~NGsGKSTLl~~I~Gl~~   88 (282)
T cd03291          52 VLKNINLKIEKGEM--LAITGSTGSGKTSLLMLILGELE   88 (282)
T ss_pred             ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55666677888877  99999999999999999988653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.16  E-value=0.00053  Score=45.01  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.+|.|++||||||+..++.--+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999998886654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.16  E-value=0.00024  Score=60.55  Aligned_cols=37  Identities=14%  Similarity=0.093  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        25 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         25 ILKDITIKIPNNSI--FGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             eEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56677777888887  99999999999999999997643

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.16  E-value=0.0002  Score=64.15  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus         8 ~l~~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~Gl~~   44 (363)
T TIGR01186         8 GVNDADLAIAKGEI--FVIMGLSGSGKSTTVRMLNRLIE   44 (363)
T ss_pred             eEEeeEEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC
Confidence            45666778888887  99999999999999999998654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.16  E-value=0.00023  Score=58.77  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=28.3

Q ss_pred             CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        16 EFDLNVADGEI--VAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             eeEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCC
Confidence            44566788887  9999999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.16  E-value=0.00023  Score=60.87  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        23 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   59 (261)
T PRK14263         23 AVRDSHVPIRKNEI--TGFIGPSGCGKSTVLRSLNRMND   59 (261)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccc
Confidence            45666777888887  99999999999999999988753

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.16  E-value=0.0002  Score=67.29  Aligned_cols=46  Identities=15%  Similarity=0.040  Sum_probs=36.2

Q ss_pred             HHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         36 LNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        36 ~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .-.|+.. ...+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus       327 ~f~y~~~~~~il~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       327 SVAYPGRRAPALRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             EEECCCCCcccccceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            3344433 2467778888888887  99999999999999999987654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.16  E-value=0.00021  Score=64.40  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|.+  ++|.|++||||||+.+.|+...
T Consensus        34 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         34 AVDDVSLTIYKGEI--FALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999999754

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=97.15  E-value=0.00022  Score=63.13  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=32.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        30 ~~l~~vsl~i~~Ge~--~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         30 TAVNDLNFSLRAGET--LGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCchHHHHHHHHHcCCC
Confidence            356777788888887  99999999999999999998764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.15  E-value=0.0003  Score=66.97  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...+++.+..+.+|..  ++|.|++||||||++++|+..+..
T Consensus       356 ~~il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        356 VPALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             CccccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHhccCC
Confidence            3467777788888887  999999999999999999987653

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.15  E-value=0.00059  Score=58.38  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|+|++|+|||++|+.|++.+|..++
T Consensus        24 vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            889999999999999999998887654

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG0055|consensus

Probab=97.15  E-value=0.00012  Score=73.13  Aligned_cols=51  Identities=14%  Similarity=0.109  Sum_probs=42.2

Q ss_pred             HHHHHHHhhhccc--cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         32 VEELLNIYSRINE--TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        32 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+++.-+|+.+|.  ++++.+..+..|++  ++|.||+||||||+..+|.+.+..
T Consensus       990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqT--vALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen  990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQT--VALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred             EeeeEeeCCCCCCchhhcCCcEEecCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence            3445557887765  66778888999998  999999999999999999998864

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.15  E-value=0.00022  Score=63.10  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        35 ~~l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~Gl~~   72 (331)
T PRK15079         35 KAVDGVTLRLYEGET--LGVVGESGCGKSTFARAIIGLVK   72 (331)
T ss_pred             EEEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCC
Confidence            356677778888887  99999999999999999987653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.14  E-value=0.00074  Score=53.95  Aligned_cols=28  Identities=18%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.+.|.|++|+||||+++.+.+.+...
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4559999999999999999998887765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.14  E-value=0.00019  Score=67.84  Aligned_cols=44  Identities=14%  Similarity=0.090  Sum_probs=34.7

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|+.....+++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus       331 ~y~~~~~~l~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g~~~  374 (547)
T PRK10522        331 AYQDNGFSVGPINLTIKRGEL--LFLIGGNGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             EeCCCCeEEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            343323366777778888887  99999999999999999988653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.14  E-value=0.0002  Score=69.53  Aligned_cols=47  Identities=17%  Similarity=0.045  Sum_probs=37.5

Q ss_pred             HHHhhh-ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         36 LNIYSR-INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        36 ~~~~~~-~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .-.|+. .+.++++.|..+.+|..  |+|.|++||||||++++|+..+..
T Consensus       458 sf~Y~~~~~~vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p  505 (686)
T TIGR03797       458 TFRYRPDGPLILDDVSLQIEPGEF--VAIVGPSGSGKSTLLRLLLGFETP  505 (686)
T ss_pred             EEEcCCCCccceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCC
Confidence            334532 24577888888899988  999999999999999999987653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.13  E-value=0.00028  Score=53.26  Aligned_cols=27  Identities=33%  Similarity=0.664  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|+|++|.||||+++.||+.++..+.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCcee
Confidence            789999999999999999999997653

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>KOG0056|consensus

Probab=97.13  E-value=0.00015  Score=66.03  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=43.7

Q ss_pred             HHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         31 EVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +..++.-.|+-...++.+.|....+|+.  |++.||+|+||||+.+.|-+.+...
T Consensus       539 ~fsnvtF~Y~p~k~vl~disF~v~pGkt--vAlVG~SGaGKSTimRlLfRffdv~  591 (790)
T KOG0056|consen  539 EFSNVTFAYDPGKPVLSDISFTVQPGKT--VALVGPSGAGKSTIMRLLFRFFDVN  591 (790)
T ss_pred             EEEEeEEecCCCCceeecceEEecCCcE--EEEECCCCCchhHHHHHHHHHhhcc
Confidence            4445555677777788888888899888  9999999999999999999987653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.13  E-value=0.00026  Score=61.08  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~   58 (277)
T PRK13642         22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDGLFE   58 (277)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56667777888887  99999999999999999997653

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.12  E-value=0.00031  Score=65.50  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G~~   53 (490)
T PRK10938         18 TLQLPSLTLNAGDS--WAFVGANGSGKSALARALAGEL   53 (490)
T ss_pred             ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            56677778888887  9999999999999999999865

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.12  E-value=0.00027  Score=64.71  Aligned_cols=28  Identities=18%  Similarity=0.087  Sum_probs=23.5

Q ss_pred             CCCCCcccCCCCCeEEEEcCCCCcHHHHHH
Q psy16563         47 DQDSGVGDDRKYPLIVFEGLDGCGKSHTSQ   76 (259)
Q Consensus        47 ~~~~~~~~~~~~~ii~~~g~~g~gkst~~~   76 (259)
                      ++.+....+|..  |+|+|++||||||+++
T Consensus        23 ~~Vsl~i~~GEi--v~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        23 VKFNKELPSSSL--LFLCGSSGDGKSEILA   50 (504)
T ss_pred             hCCceeecCCCE--EEEECCCCCCHHHHHh
Confidence            334456788887  9999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.11  E-value=0.00027  Score=59.89  Aligned_cols=36  Identities=19%  Similarity=0.151  Sum_probs=30.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        18 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         18 ILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhh
Confidence            45566667788877  9999999999999999998754

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.11  E-value=0.00025  Score=60.37  Aligned_cols=36  Identities=17%  Similarity=0.099  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        36 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          36 VLKHVKAYIKPGQK--VGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             ceeEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHccc
Confidence            45566677888887  9999999999999999998864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.11  E-value=0.00028  Score=55.39  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=29.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.+..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        14 ~l~~~~~~i~~g~~--~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          14 ALDNVSLTLKAGEI--VALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            34455566777766  9999999999999999998754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.11  E-value=0.00031  Score=68.44  Aligned_cols=49  Identities=12%  Similarity=0.086  Sum_probs=38.7

Q ss_pred             HHHHHhhhc--cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         34 ELLNIYSRI--NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        34 ~~~~~~~~~--~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++.-.|+..  ..++++.|..+.+|..  |+|.|++||||||+++.|...+..
T Consensus       483 nVsf~Y~~~~~~~vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p  533 (711)
T TIGR00958       483 DVSFSYPNRPDVPVLKGLTFTLHPGEV--VALVGPSGSGKSTVAALLQNLYQP  533 (711)
T ss_pred             EEEEECCCCCCCccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCC
Confidence            334455432  2477888888999988  999999999999999999987653

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.11  E-value=0.00028  Score=61.69  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        60 iL~~is~~i~~Ge~--~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         60 ALKGVSMDIPEKSV--TALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccc
Confidence            56666777888887  9999999999999999999765

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.11  E-value=0.00042  Score=60.71  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|+|++||||||+++.||+.++..++
T Consensus        67 ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        67 VMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             EEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            999999999999999999999998754

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF13173 AAA_14: AAA domain

Probab=97.10  E-value=0.00052  Score=52.00  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=22.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++|.|+.||||||+++.+++.+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4599999999999999999998876

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.10  E-value=0.00048  Score=56.34  Aligned_cols=27  Identities=33%  Similarity=0.501  Sum_probs=24.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+|++.||+|+||||.+..||.++...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~   28 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLK   28 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence            369999999999999999999998754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.09  E-value=0.00076  Score=59.91  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=27.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      .++.|.||+|||||.++++++..++..++..
T Consensus       149 lgllL~GPPGcGKTllAraiA~elg~~~i~v  179 (413)
T PLN00020        149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVM  179 (413)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence            3589999999999999999999999886643

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.09  E-value=0.00027  Score=68.91  Aligned_cols=44  Identities=23%  Similarity=0.171  Sum_probs=36.3

Q ss_pred             Hhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         38 IYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        38 ~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|+.. ..++++.|..+.+|..  |+|.|++||||||+++.|+..+.
T Consensus       486 ~y~~~~~~vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~  530 (710)
T TIGR03796       486 GYSPLEPPLIENFSLTLQPGQR--VALVGGSGSGKSTIAKLVAGLYQ  530 (710)
T ss_pred             ecCCCCCCcccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45432 3467788888899988  99999999999999999998765

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
1e9f_A	217	Mutant Human Thymidylate Kinase Complexed With Tmp		2e-05
2pbr_A	195	Crystal Structure Of Thymidylate Kinase (Aq_969) Fr		3e-05
1e9c_A	215	Mutant Human Thymidylate Kinase Complexed With Tmp		8e-05
3hjn_A	197	Crystal Structure Of Thymidylate Kinase In Complex		9e-05
1e2d_A	215	Human Thymidylate Kinase Complexed With Thymidine M		2e-04
2xx3_A	232	Human Thymidylate Kinase Complexed With Thymidine B		2e-04
1nmy_A	209	Crystal Structure Of Human Thymidylate Kinase With		2e-04
1e98_A	215	Wild Type Human Thymidylate Kinase Complexed With A		3e-04

>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp Length = 217

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 49/211 (23%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+DG GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 7   RRGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  A+  A E       K  D+
Sbjct: 67  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR------LSRRKNFTLEENELKKNAK 211
            LP              KPDLV++L +  A   +R      L R +N   +E  L+    
Sbjct: 126 GLP--------------KPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALR---C 168
Query: 212 FRELL--TTIYRNMNNPELVFVDNSEKSVHE 240
           F +L+  TT+     N ++V    S ++VHE
Sbjct: 169 FHQLMKDTTL-----NWKMVDASKSIEAVHE 194

>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From Aquifex Aeolicus Vf5 Length = 195

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 60  LIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMS-------LREKFDAHDSL 107
           LI FEG+DG GK+  ++ + + LK      SL   P  + +        L E+ D    L
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTEL 61
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVV-MDRFWHSTSAY-----GMANELVKNSDLKLPD 161
           L   + +  + +  + I  DL++  VV +DRF  ST AY     G+  E +KN       
Sbjct: 62  L--LFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKN------- 112
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF 199
               +  +    +KPD+ + L +   I L+RL  +  F
Sbjct: 113 ----LNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF 146

>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Appnp Length = 215

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+D  GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 7   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  AY  A E       K  D+
Sbjct: 67  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAYTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
            LP              KPDLV++L     ++L   ++R  F  E  E   N  F+E   
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
             +  +      N ++V    S ++VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHE 192

>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With Dtdp And Adp From Thermotoga Maritima Length = 197

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 60  LIVFEGLDGCGKSHTSQTVAKKL-----KASLKSTPPSSIMSLR-EKFDAHDSLLRRAYY 113
            I FEG+DG GKS   Q +A+ L     K  LK  P  +    +  K    + +  +A  
Sbjct: 2   FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 114 SLGNYIAAQ-----DIKQDL-QKQPVVMDRFWHSTSAY-GMANELVKNSDLKLPDEDDDI 166
            L  ++A++     +IKQ L +   V++DR+  S+ AY G    L K    +L D     
Sbjct: 62  FL--FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND----- 114
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNP 226
             +  D + PDL  Y+ V     L+R      F  E+ E  +  + RE    + R   +P
Sbjct: 115 --FATDGLIPDLTFYIDVDVETALKRKGELNRF--EKREFLE--RVREGYLVLAR--EHP 166
Query: 227 ELVFVDNSEKSVHESSNDIV 246
           E + V + ++S+ E   D+V
Sbjct: 167 ERIVVLDGKRSIEEIHRDVV 186

>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Monophosphate, Adenosine Diphosphate And A Magnesium-Ion Length = 215

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+D  GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 7   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  A+  A E       K  D+
Sbjct: 67  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
            LP              KPDLV++L     ++L   ++R  F  E  E   N  F+E   
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
             +  +      N ++V    S ++VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHE 192

>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl Phosphonate Monophosphate And Adp Length = 232

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+D  GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 24  RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 83
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  A+  A E       K  D+
Sbjct: 84  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 142
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
            LP              KPDLV++L     ++L   ++R  F  E  E   N  F+E   
Sbjct: 143 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 181
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
             +  +      N ++V    S ++VHE
Sbjct: 182 RCFHQLMKDTTLNWKMVDASKSIEAVHE 209

>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp And Appnhp Length = 209

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+D  GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 1   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 60
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  A+  A E       K  D+
Sbjct: 61  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 119
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT 217
            LP              KPDLV++L     ++L   ++R  F  E  E   N  F+E   
Sbjct: 120 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 158
Query: 218 TIYRNMN-----NPELVFVDNSEKSVHE 240
             +  +      N ++V    S ++VHE
Sbjct: 159 RCFHQLMKDTTLNWKMVDASKSIEAVHE 186

>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp And Adp Length = 215

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 45/208 (21%)
Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASL----------KSTPPSSIMS--LREKFDA 103
           R+  LIV EG+D  GKS  S+ + + L A+           +ST    ++S  L++K D 
Sbjct: 7   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 104 HDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANE-----LVKNSDL 157
            D  +    +S   +     IK+ L Q   +V+DR+  S  A+  A E       K  D+
Sbjct: 67  EDHSV-HLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV 125
Query: 158 KLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE-LL 216
            LP              KPDLV++L     ++L   ++R  F  E  E   N  F+E  L
Sbjct: 126 GLP--------------KPDLVLFLQ----LQLADAAKRGAFGHERYE---NGAFQERAL 164
Query: 217 TTIYRNMNNPELVF--VDNSEK--SVHE 240
              ++ M +  L +  VD S++  +VHE
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKRIEAVHE 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	2e-20
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	3e-18
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	4e-18
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	6e-18
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	4e-17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	9e-17
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	6e-16
2ccj_A	205	DTMP kinase, thymidylate kinase; transferase, nucl	8e-16
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	1e-15
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	2e-15
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	4e-15
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	8e-15
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	1e-14
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	3e-14
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	3e-07
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	6e-07
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	2e-06
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	1e-05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	3e-05
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	1e-04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	3e-04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	6e-04

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 42/216 (19%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKST-------PPSSIMS--LRE-------KFDA 103
           LI+ EGLD  GK+    T    L   L+           S+ +   + E       +   
Sbjct: 7   LILIEGLDRTGKT----TQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSD 62

Query: 104 HDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLK 158
               L     R             IK+DL + + +VMDR+ +S  AY  A          
Sbjct: 63  QAIHLLFSANRW-------EIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGT------- 108

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKK-NAKFRELL 216
              + D        L+KPDL ++L+  +       S   +   E  +  +K    F +LL
Sbjct: 109 NGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLL 168

Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
                   +  +  VD + K + E    I +++  +
Sbjct: 169 DK-EIRKGDESITIVDVTNKGIQEVEALIWQIVEPV 203

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Length = 204

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 54/213 (25%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------TPPSS---------IMSLREKFDA 103
           LIVFEGLD  GK+    T    +  S+ +        P  S          ++ ++ ++ 
Sbjct: 6   LIVFEGLDKSGKT----TQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYND 61

Query: 104 HDSLL----RRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLK 158
           H   L     R  +       A  I++ L++   +++DR+  S  AY  A        + 
Sbjct: 62  HIVNLLFCANRWEF-------ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGA----SMT 110

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
           L        S+   L KPDLVI+L        + +        E+        F++ +  
Sbjct: 111 L------SKSYESGLPKPDLVIFLESGSKEINRNVGEEI---YEDVT------FQQKVLQ 155

Query: 219 IYRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
            Y+ M         + +S +   +   ++++ I
Sbjct: 156 EYKKMIEEGDIHWQIISS-EFEEDVKKELIKNI 187

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Length = 212

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 51/219 (23%), Positives = 78/219 (35%), Gaps = 56/219 (25%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------------TPP-----SSIMSLREKF 101
            IVFEGLD  GKS    T +K L   LK+                     S  + +    
Sbjct: 12  FIVFEGLDRSGKS----TQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSM 67

Query: 102 DAH-DSLLRRAYYSLGNYIAA-----QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVK 153
                 LL         + A       +IK  L K   VV DR+ +S  AY   A  L  
Sbjct: 68  SNETIHLL---------FSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNL-- 116

Query: 154 NSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR 213
                         +  + L+KPD+V YL V       R    +    E+ E +K  K  
Sbjct: 117 --------NKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI-YEKVETQK--KIY 165

Query: 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
           E     Y++  + +     ++ + + +  NDIV+ +  +
Sbjct: 166 E----TYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 33/163 (20%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKS--------------TPPSSIMS---LREKFD 102
           LI  EG+DG GK     T+ +KL  + ++                 ++ ++   L  +  
Sbjct: 2   LIAIEGVDGAGKR----TLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHG 57

Query: 103 AHD------SLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNS 155
                    + L    ++L    A   I+   +    V++DR+  S +AY  A      +
Sbjct: 58  DLASSVYAMATL----FALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAA 113

Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
                     I      L KPD  + L VS  +  +R   R  
Sbjct: 114 GKAA-AWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Length = 215

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 47/219 (21%), Positives = 76/219 (34%), Gaps = 54/219 (24%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------------TPP-----SSIMSLREKF 101
           LIV EG+D  GKS    T ++KL  +L +             +       SS +  +   
Sbjct: 11  LIVLEGVDRAGKS----TQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66

Query: 102 DAHDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNS 155
           + H   L     R             IK+ L +   +V+DR+  S  A+ G         
Sbjct: 67  EDHSVHLLFSANRW-------EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENF---- 115

Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
                   D        L KPDLV++L +  A   +R +       E  E   N  F+E 
Sbjct: 116 ------SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH----ERYE---NGAFQER 162

Query: 216 LTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
               +  +  +      + ++ KS+     DI  L  + 
Sbjct: 163 ALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA 201

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Length = 213

 Score = 75.8 bits (187), Expect = 9e-17
 Identities = 43/226 (19%), Positives = 78/226 (34%), Gaps = 56/226 (24%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSSIMS-------LREKFDAH 104
           LI FEG+DG GKS    + A  LK  ++            S  +         ++     
Sbjct: 6   LIAFEGIDGSGKS----SQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPL 61

Query: 105 -DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSD 156
             SL+         +         + I   L+    V+ DR+ ++  A      +     
Sbjct: 62  TFSLI---------HATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGV----- 107

Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN----------FTLEENEL 206
                + D +       +KPD+  Y+ VS  I L+R+ + K                +  
Sbjct: 108 -----DIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPE 162

Query: 207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
           +   K++ L+T +Y  +   E   V +  K+  E    I + +  L
Sbjct: 163 EGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGEL 208

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Length = 195

 Score = 72.9 bits (180), Expect = 6e-16
 Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 46/215 (21%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMS-------LREKFDAH-DS 106
           LI FEG+DG GK+  ++ + + LK           P  + +        L E+ D   + 
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTEL 61

Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
           LL         + A+      + I  DL++ + V++DRF  ST AY G    L       
Sbjct: 62  LL---------FEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGL------- 105

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
             +   ++  +    +KPD+ + L +   I L+RL  +  F   EN+     +F E +  
Sbjct: 106 DVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF---ENK-----EFLEKVRK 157

Query: 219 IYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
            +  +    E V V ++     E   +I+  +  +
Sbjct: 158 GFLELAKEEENVVVIDASGEEEEVFKEILRALSGV 192

>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205

 Score = 72.6 bits (179), Expect = 8e-16
 Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 43/217 (19%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLK--------STPPS----SIMSLREKFDAH-DS 106
            I FEG +G GK+     V  +L               P       I+      D   ++
Sbjct: 4   FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEA 63

Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
           +L         + A+        +   L++ + V+ DR+  S+ AY G A  +       
Sbjct: 64  ML---------FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGI------- 107

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELKKNAKFRELLT 217
             +E   +  +  + + PDL IYL VS  +  +R +   ++    + E   + KF E + 
Sbjct: 108 GVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE---DLKFHEKVI 164

Query: 218 TIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
             Y+ +  N  +     N+++ +     D  + I   
Sbjct: 165 EGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 201

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 43/217 (19%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLK--------STPPS----SIMSLREKFDAH-DS 106
            I FEG +G GK+     V  +L               P       I+      D   ++
Sbjct: 28  FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEA 87

Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
           +L         + A+        +   L++ + V+ DR+  S+ AY G A  +       
Sbjct: 88  ML---------FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGI------- 131

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELKKNAKFRELLT 217
             +E   +  +  + + PDL IYL VS  +  +R +   ++    + E   + KF E + 
Sbjct: 132 GVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE---DLKFHEKVI 188

Query: 218 TIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
             Y+ +  N  +     N+++ +     D  + I   
Sbjct: 189 EGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 54/224 (24%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-------------------- 99
            IV EGL+G GKS    T  + +  +L+      I   RE                    
Sbjct: 29  FIVIEGLEGAGKS----TAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPG 84

Query: 100 -KFDAH-DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMAN 149
            +     + LL           AA        IK  L + + VV DR   S+ AY G   
Sbjct: 85  EELQDITELLL---------VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGR 135

Query: 150 ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN 209
           ++        P     +        KPDL +YL +   + L+R   R      E     +
Sbjct: 136 QI-------APSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKM---D 185

Query: 210 AKFRELLTTIYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
             F E     Y  + N+ + V + ++ +S+ + + DI   + + 
Sbjct: 186 ISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDW 229

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Length = 213

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 42/219 (19%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-----------------KFD 102
            IV EGL+G GK+    T    +  +L+      ++  RE                 K  
Sbjct: 5   YIVIEGLEGAGKT----TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSV 60

Query: 103 AHDSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
             + +  +A   +  + AA        IK  L     V+ DR   ST AY G    +   
Sbjct: 61  GDEVITDKAEVLM--FYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGI--- 115

Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
                      +        +PDL +YL V+  + L+R   R      E E   +  F  
Sbjct: 116 ----DQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQE---SFDFFN 168

Query: 215 LLTTIYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
                Y  +    + +   ++ + +    + I   + + 
Sbjct: 169 RTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW 207

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A* Length = 213

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 46/220 (20%), Positives = 73/220 (33%), Gaps = 47/220 (21%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM-----------SLREKFDAHDSLL 108
            +  EG +G GKS    T    L   L+       +            +RE       LL
Sbjct: 8   FVTLEGPEGAGKS----TNRDYLAERLRERGIEVQLTREPGGTPLAERIRE------LLL 57

Query: 109 RRAYYSLGN------YIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
             +   +          AA        I+  L +   V+ DRF  +T AY G    L   
Sbjct: 58  APSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGL--- 114

Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
                      + S+ +  ++PDL +   +   I L R + R      E E   + +F E
Sbjct: 115 ----PEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE---DRRFFE 167

Query: 215 LLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
            +   Y       PE   V ++   + E    +  L+ NL
Sbjct: 168 AVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNL 207

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Length = 227

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 46/220 (20%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------------LREKFDA 103
            I FEG+DG GK+   Q    +L+  L       +++                L +  D 
Sbjct: 27  FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDL 86

Query: 104 H-DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
             ++LL           A         I+  L +   VV DRF  +T AY G    L   
Sbjct: 87  ETEALL---------MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGL--- 134

Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
                 D+ + +  W +   +PDL +   V   I   R    +     E+E   +  F  
Sbjct: 135 ----PRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESE---SDAFFA 187

Query: 215 LLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
                Y       P    + +S + + +    +  ++  L
Sbjct: 188 RTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAAL 227

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Length = 223

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 53/222 (23%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLK-----------STPPS----SIMSLREKFDAH 104
            I FEG+DG GK+  S  +A+ L                 T  +    +++   +  D+ 
Sbjct: 23  FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSL 82

Query: 105 -DSLLRRAYYSLGNYIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNS 155
            + L          +IA       + IK  L ++ +V+ DRF  ST AY G    +    
Sbjct: 83  SELLF---------FIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGI---- 129

Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
                   D +     D+  PD+   + V     L R  +      E      + +F   
Sbjct: 130 ---DCSLIDQLNDLVIDV-YPDITFIIDVDINESLSRSCKNG---YE----FADMEFYYR 178

Query: 216 LTTIYRNM--NNPELVFVDNSEKS---VHESSNDIVELIHNL 252
           +   + ++   NP    V   +     + + +   +E+I  L
Sbjct: 179 VRDGFYDIAKKNPHRCHVITDKSETYDIDDINFVHLEVIKVL 220

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 51/333 (15%), Positives = 111/333 (33%), Gaps = 95/333 (28%)

Query: 1   MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPL 60
           + S  +   + PS+++ + I +  +  +  +V    N+ SR+         + + R    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKN 152

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI--MSLREKFDAHDSL--LRRAYYSL- 115
           ++ +G+ G GK+  +  V    K  ++      I  ++L+        L  L++  Y + 
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 116 GNYIAAQDI--------------KQDLQKQP------VVMDRFWHS-------------- 141
            N+ +  D                + L K        +V+    ++              
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 142 -TSAYGMAN----------ELVKNSDLKLPDEDDDIYS-W----PKDL------MKPDLV 179
            T    + +           L  +S    PDE   +   +    P+DL        P   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RR 329

Query: 180 IYLTVSEAIRLQRLSRRKNF-----------------TLEENELKKNAKFRELLTTIYR- 221
           + + ++E+IR   L+   N+                  LE  E +K   F  L  +++  
Sbjct: 330 LSI-IAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRL--SVFPP 383

Query: 222 NMNNPELVFV---DNSEKSVHESSNDIVELIHN 251
           + + P ++      +  KS       +V  +H 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVM---VVVNKLHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 48/219 (21%)

Query: 54  DDRKYPLIVFEGLDGCGKSHTSQTVAKKL-KASL--KSTPPS--SIMSL--------REK 100
                P I+   +           V  KL K SL  K    S  SI S+          +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 101 FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMAN-ELVKNSDL-- 157
           +  H S++   Y     +    D   DL    +  D++++S   + + N E  +   L  
Sbjct: 443 YALHRSIVDH-YNIPKTF----D-SDDLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 158 -----------KLPDEDDDIYSWPKDLMKPDLVI-------YLTVSEAIRLQRLSRRKNF 199
                      K+     D  +W       + +        Y+  ++    + ++   +F
Sbjct: 495 MVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 200 TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSV 238
             +  E    +K+ +LL      +   +    + + K V
Sbjct: 552 LPKIEENLICSKYTDLLRIA---LMAEDEAIFEEAHKQV 587

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 32/193 (16%)

Query: 59  PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
            LI+ EG D C KS    TVA KL   LK         + +      +            
Sbjct: 2   TLIILEGPDCCFKS----TVAAKLSKELK-------YPIIKGSSFELAKSGNEKLFEH-- 48

Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
                  +   +  V++DRF +S   Y  A +    S L    +   I      +     
Sbjct: 49  -----FNKLADEDNVIIDRFVYSNLVY--AKKFKDYSILT-ERQLRFI---EDKIKAKAK 97

Query: 179 VIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVF--VDNSEK 236
           V+YL    ++  +RL  R +  +E  ++        +L      M+N  L     D  + 
Sbjct: 98  VVYLHADPSVIKKRLRVRGDEYIEGKDIDS------ILELYREVMSNAGLHTYSWDTGQW 151

Query: 237 SVHESSNDIVELI 249
           S  E + DI+ L+
Sbjct: 152 SSDEIAKDIIFLV 164

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 47.8 bits (113), Expect = 6e-07
 Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 27/199 (13%)

Query: 53  GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY 112
            DD    +++  G  G GKS    T+A+ L                 K   H   L    
Sbjct: 4   TDDLGGNILLLSGHPGSGKS----TIAEALANLPG----------VPKVHFHSDDLWGY- 48

Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
             + +      + Q  Q+  ++M         Y      V    +  PD           
Sbjct: 49  --IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAF----TA 102

Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
           L +P   I L  + A  ++R   R   +L +  +         L + + ++   E   + 
Sbjct: 103 LARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLV------VADLHSQFADLGAFEHHVLP 156

Query: 233 NSEKSVHESSNDIVELIHN 251
            S K   ++    +  + +
Sbjct: 157 VSGKDTDQALQSAINALQS 175

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 37/210 (17%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------SIM-------SLREKFD 102
           K  ++V  G+ G G +    T ++    +L+    +       S+M       +L    D
Sbjct: 2   KNKVVVVTGVPGVGST----TSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD 57

Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
               +       +   +A + I +  ++ PV +D   HST         V      LP  
Sbjct: 58  QMRKMDPETQKRI-QKMAGRKIAEMAKESPVAVD--THST---------VSTPKGYLPGL 105

Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR---RKNFTLEENELKKNAKFRELLTTI 219
              +     + + PDL+I +  +    L R      R       + ++++          
Sbjct: 106 PSWVL----NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS 161

Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELI 249
           Y  +    +  V N    + ++  ++  ++
Sbjct: 162 YGVLTGATVKIVQNRNGLLDQAVEELTNVL 191

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 30/202 (14%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
           L +  G  G GKS    T  K+L A L ++       +                 +G Y 
Sbjct: 4   LYIITGPAGVGKS----TTCKRLAAQLDNSAYIEGDIINHMV-------------VGGYR 46

Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS--WPKDLMKPD 177
              +  + L    +        T  + +A   V    +  PDE + +      K      
Sbjct: 47  PPWESDELLA---LTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103

Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
             I L  +    L+R + RK    +E   ++  +  E     + +    E  F + S   
Sbjct: 104 RFIILWTNREELLRRDALRKK---DEQMGERCLELVEE----FESKGIDERYFYNTSHLQ 156

Query: 238 VHESSNDIVELIHNLPMFKHSL 259
               + DIV+ +   P F   +
Sbjct: 157 PTNLN-DIVKNLKTNPRFIFCM 177

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 32/202 (15%)

Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----DAHDSLLRRA 111
               LI+  GL G GKS  S+ +AK L  +           +RE F    + ++  ++++
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61

Query: 112 YYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
            Y L        I   L+   V++D     T+ Y                   D+ +  K
Sbjct: 62  TYRL--------IDSALKNYWVIVD----DTNYY--------------NSMRRDLINIAK 95

Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
              K   +IYL  S  + ++R   R      E   K   KF E         + P L+  
Sbjct: 96  KYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEP--GKKYKWDEPFLIID 153

Query: 232 DNSEKSVHESSNDIVELIHNLP 253
              +   +E +  ++E    +P
Sbjct: 154 TTKDIDFNEIAKKLIEKSKEIP 175

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Length = 205

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 35/213 (16%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL------LRRAYYS 114
           I   G  G GKS    T++ ++   L           +E  + +         L++  + 
Sbjct: 3   IAIFGTVGAGKS----TISAEISKKLGYEI------FKEPVEENPYFEQYYKDLKKTVFK 52

Query: 115 LGNYI---AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-- 169
           +  Y+    ++ +KQ    + ++ DR       +   N  + N D    +   D Y+   
Sbjct: 53  MQIYMLTARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVV 112

Query: 170 ------PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY--- 220
                 P++ +  D+VIYL VS    + R+ +R        EL    ++ E L   Y   
Sbjct: 113 LENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR----SEELLIGEEYWETLNKNYEEF 168

Query: 221 -RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
            +        FV ++E  V      I+  ++++
Sbjct: 169 YKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 41/203 (20%)

Query: 54  DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY 113
           +    P I+  G  G GK+    T+ K+L +       +     RE+             
Sbjct: 7   EFMLLPNILLTGTPGVGKT----TLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCP 62

Query: 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
            L       ++   +++  V++D                                     
Sbjct: 63  ILDEDRVVDELDNQMREGGVIVDYHG----------------------------CDFFPE 94

Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY---RNMNNPELVF 230
               +V  L     +  +RL  R      E +L  N +  E+   +Y         E+V 
Sbjct: 95  RWFHIVFVLRTDTNVLYERLETRGY---NEKKLTDNIQ-CEIFQVLYEEATASYKEEIVH 150

Query: 231 VDNSEK--SVHESSNDIVELIHN 251
              S K   +  + + I++ I  
Sbjct: 151 QLPSNKPEELENNVDQILKWIEQ 173

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 33/207 (15%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLK---ASLKSTPPSSIM-------SLREKFDAHDSLLR 109
           + +  G+ G GKS     V + L     + K       M          +  D    L  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 110 RAYYSLGNYIAAQDIKQD---LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
                L    AA+ I ++     +  + +D   H+          ++     LP     +
Sbjct: 63  EKQKKLQI-DAAKGIAEEARAGGEGYLFIDT--HAV---------IRTPSGYLPGLPSYV 110

Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRL----SRRKNFTLEENELKKNAKFRELLTTIYRN 222
                  + P ++  L     I L R     +R +N   +E+ + +   F     T    
Sbjct: 111 I----TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAV 166

Query: 223 MNNPELVFVDNSEKSVHESSNDIVELI 249
           +    +  + N E     ++N+I+  +
Sbjct: 167 LAGSTVKVIVNVEGDPSIAANEIIRSM 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.96
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.95
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.95
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.94
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.94
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.94
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.93
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.93
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.89
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.87
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.82
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.81
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.8
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.8
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.8
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.78
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.78
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.78
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.77
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.77
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.74
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.73
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.72
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	99.72
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.71
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.7
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.7
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.68
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.67
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.67
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.67
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.66
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.65
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.64
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.64
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.63
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.62
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.62
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.61
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.6
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.6
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.6
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.6
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.59
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.59
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.58
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.55
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.54
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	99.54
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.53
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.52
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.51
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.51
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.5
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.5
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.49
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.48
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.47
1via_A	175	Shikimate kinase; structural genomics, transferase	99.47
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.47
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.44
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.39
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.38
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.38
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.36
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.36
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.33
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.32
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.31
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.3
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.3
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.3
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.27
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.26
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.26
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.24
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.22
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.22
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.2
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.17
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.14
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.13
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.06
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.05
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.93
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.92
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.91
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.88
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.87
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.85
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.83
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.83
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.82
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.82
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.78
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.78
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.77
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.71
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.66
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.6
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.6
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.55
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.53
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.43
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.31
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.28
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.19
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.98
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.96
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.69
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.69
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.67
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.62
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.62
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.6
1g6h_A	257	High-affinity branched-chain amino acid transport	97.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.59
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.58
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.58
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.58
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.57
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.57
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.55
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.55
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.54
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.54
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.54
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.54
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.54
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.53
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.53
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.53
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.52
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.52
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.52
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.51
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.51
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.49
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.49
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.48
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.48
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.47
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.46
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.45
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.45
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.45
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.43
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.42
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.42
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.42
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.41
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.39
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.39
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.39
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.38
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.38
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.36
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.36
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.34
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.33
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.31
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.31
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.29
2og2_A	359	Putative signal recognition particle receptor; nuc	97.29
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.29
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.26
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.26
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.25
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.25
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.24
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.21
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.21
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.2
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.18
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.16
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.15
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.15
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.15
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.12
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.12
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.11
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.08
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.05
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.04
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.01
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.01
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.0
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.99
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.98
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.97
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.96
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.94
3bos_A	242	Putative DNA replication factor; P-loop containing	96.92
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.91
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.89
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.88
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.88
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.88
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.87
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.87
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.85
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.84
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.8
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.8
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.79
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.79
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.78
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.78
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.77
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.76
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.75
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.75
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.75
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.75
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	96.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.74
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.73
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.73
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.72
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.71
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.71
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.7
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.68
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.64
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.63
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.62
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.6
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.6
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.6
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.59
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.58
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.57
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.56
3pvs_A	447	Replication-associated recombination protein A; ma	96.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.54
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.54
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.53
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.52
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.52
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.52
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.5
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.49
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.49
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.48
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.48
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.47
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.46
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.43
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.42
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.41
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.41
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.4
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.4
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.39
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.39
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.38
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.38
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.37
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.37
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.37
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.37
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.36
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.36
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.35
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.34
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.34
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.33
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.31
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.31
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.3
3co5_A	143	Putative two-component system transcriptional RES	96.3
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.29
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.28
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.28
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.27
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.26
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.26
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.23
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.23
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.22
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.22
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.21
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.21
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.21
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.2
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.17
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.15
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.14
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.14
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.11
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.1
2qgz_A	308	Helicase loader, putative primosome component; str	96.09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.08
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.07
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.06
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.06
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.06
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.05
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.03
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.02
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.0
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.99
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.99
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.96
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.96
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.96
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.95
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.95
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.93
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.92
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.91
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.89
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.85
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.85
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.83
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.82
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.8
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.78
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.78
2xxa_A	433	Signal recognition particle protein; protein trans	95.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.76
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.75
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.73
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.72
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.71
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.71
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.7
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.7
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.69
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.69
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.68
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.68
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.68
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.68
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.68
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.68
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.66
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.65
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.65
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.64
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.63
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.63
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.62
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.62
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.62
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.61
2fna_A	357	Conserved hypothetical protein; structural genomic	95.61
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.57
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.55
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.53
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	95.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.52
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.52
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.51
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.51
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.5
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.48
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.47
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.47
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.47
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.47
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.47
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.46
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.45
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.43
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.42
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.42
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.4
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.37
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.37
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.36
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.35
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.35
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.34
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.33
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.32
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.3
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.29
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.27
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.27
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.27
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.27
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.25
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.25
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.25
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.23
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.23
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.22
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.22
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.2
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.19
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.18
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.18
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.17
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.15
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.15
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.15
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.13
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.13
3ice_A	422	Transcription termination factor RHO; transcriptio	95.12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.12
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.11
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.1
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.1
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.06
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.04
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.04
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.03
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.03
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.01
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.01
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.0
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.92
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.9
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.9
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.88
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.86
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.84
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.82
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.82
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.82
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.82

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.96  E-value=2.8e-28  Score=199.87  Aligned_cols=183  Identities=20%  Similarity=0.303  Sum_probs=134.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc----cccCCCCc--hHHHHHHhccccch---HHHHHHHHHHH-HHHHHHHHHh-
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSS--IMSLREKFDAHDSL---LRRAYYSLGNY-IAAQDIKQDL-  128 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~----~~~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~i~~~l-  128 (259)
                      +|+|+|++||||||+++.|+++|...    ...+|+++  +..+++.+.+...+   ....+|+++++ +..+.+.+++ 
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~   83 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK   83 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            39999999999999999999999532    24577764  46778777654332   23345666664 4667788877 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELK  207 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e  207 (259)
                      +|..||+|||++|+++|+..   +++++   .+....+..+....+.||++|||++||+++++|+.+|+.. ++.+.+  
T Consensus        84 ~g~~Vi~DRy~~S~~ayq~~---~~~~~---~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~--  155 (205)
T 4hlc_A           84 EGKVVLCDRYIDSSLAYQGY---ARGIG---VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE--  155 (205)
T ss_dssp             TTCEEEEECCHHHHHHHTTT---TTSSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHH--
T ss_pred             cCCEEEecCcccchHHHHhc---cccch---HHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhcc--
Confidence            69999999999999999753   23331   2234555566666788999999999999999999988742 222221  


Q ss_pred             HHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        208 KNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                       ..+|++++++.|.++.  .+ .+++||++.+ ++++.++|.+.|.+.
T Consensus       156 -~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~-~e~V~~~i~~~i~~~  201 (205)
T 4hlc_A          156 -DLKFHEKVIEGYQEIIHNESQRFKSVNADQP-LENVVEDTYQTIIKY  201 (205)
T ss_dssp             -HHHHHHHHHHHHHHHHHSCCTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHhCCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence             5678999999999983  33 4999999987 999999999888764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.95  E-value=5.8e-27  Score=192.99  Aligned_cols=183  Identities=21%  Similarity=0.270  Sum_probs=136.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc--hHHHHHHhccc-----cch---HHHHHHHHHH-HHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS--IMSLREKFDAH-----DSL---LRRAYYSLGN-YIAAQ  122 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~--~~~~~~~~~~~-----~~~---~~~~~~~~~~-~~~~~  122 (259)
                      +|+|+|++||||||+++.|++++....      ..+|+++  +..+++.+...     ..+   ....+|.+.+ ++..+
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~   84 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVET   84 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999986543      3567654  36677776521     122   2233455555 55667


Q ss_pred             HHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch
Q psy16563        123 DIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL  201 (259)
Q Consensus       123 ~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~  201 (259)
                      .|.|++ +|.+||+|||++|+++|+.+   +.+++   .+....+..|....+.||++|||++|++++++|+.+|+..++
T Consensus        85 ~i~paL~~g~~VI~DRy~~S~~AYq~~---~~g~~---~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr  158 (213)
T 4tmk_A           85 VIKPALANGTWVIGDRHDLSTQAYQGG---GRGID---QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDR  158 (213)
T ss_dssp             THHHHHHTTCEEEEECCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCT
T ss_pred             HHHHHHHCCCEEEEcCcHhHHHHHccc---ccCCC---HHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccc
Confidence            788887 69999999999999999853   22321   122344555666778999999999999999999999975433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        202 EENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .+.+   ..+|++++++.|.++.  ...+++||++.+ ++++.++|.+.|...
T Consensus       159 ~E~~---~~~f~~rv~~~y~~la~~~~~~~vIDa~~s-~eeV~~~I~~~l~~~  207 (213)
T 4tmk_A          159 IEQE---SFDFFNRTRARYLELAAQDKSIHTIDATQP-LEAVMDAIRTTVTHW  207 (213)
T ss_dssp             TTTS---CHHHHHHHHHHHHHHHHTCTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             hhhh---HHHHHHHHHHHHHHHHHHCCcEEEECCCCC-HHHHHHHHHHHHHHH
Confidence            3321   4678999999999884  246999999987 999999999998765

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.95  E-value=1.5e-26  Score=188.46  Aligned_cols=180  Identities=25%  Similarity=0.374  Sum_probs=133.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCc--hHHHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHh-
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSS--IMSLREKFDAHDS--LLRRAYYSLGNYIAAQDIKQDL-  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l-  128 (259)
                      ++|+|+|++||||||+++.|+++|...     ...+|+++  ++.+++.+.....  .....+|++.+++....+.+.+ 
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~   80 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS   80 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999654     34678765  3666765543321  2233456677777777888887 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      +|..||+|||++|+++|+.+   +.+.+   .+....+..+....+.||++|||++||+++.+|...|++.+        
T Consensus        81 ~g~~Vi~DRy~~S~~ayq~~---~~~~~---~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e--------  146 (197)
T 3hjn_A           81 EGYAVLLDRYTDSSVAYQGF---GRNLG---KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFE--------  146 (197)
T ss_dssp             TTCEEEEESCHHHHHHHHTT---TTCSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTC--------
T ss_pred             CCCeEEecccchHHHHHHHh---ccCCC---HHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccc--------
Confidence            58999999999999999853   22221   22244555566667889999999999999999976654321        


Q ss_pred             HHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        209 NAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ..+|++++++.|.++.  .+ .+++||++.+ ++++.++|.+.|++..
T Consensus       147 ~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~-~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          147 KREFLERVREGYLVLAREHPERIVVLDGKRS-IEEIHRDVVREVKRRW  193 (197)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHSCC-
T ss_pred             cHHHHHHHHHHHHHHHHhCCCCEEEEcCCCC-HHHHHHHHHHHHHHHh
Confidence            2358899999999884  33 4899999987 9999999999998753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.94  E-value=2.2e-26  Score=189.60  Aligned_cols=187  Identities=22%  Similarity=0.287  Sum_probs=138.1

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCCc--hHHHHHHhcccc--ch---HHHHHHHHHHHH-H
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSS--IMSLREKFDAHD--SL---LRRAYYSLGNYI-A  120 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~~--~~~~~~~~~~~~--~~---~~~~~~~~~~~~-~  120 (259)
                      .+|.+  |+|+|++||||||+++.|++++....     ..+|+++  +..+++.+.+..  .+   ....+|+++++. +
T Consensus         4 m~g~~--i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~   81 (213)
T 4edh_A            4 MTGLF--VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHL   81 (213)
T ss_dssp             -CCEE--EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCceE--EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34444  99999999999999999999997543     3567654  356777665432  12   233556666654 5


Q ss_pred             HHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        121 AQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       121 ~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      .+.+.+++ +|..||+|||++|+++|+.+   +.+++   .+....+..|....+.||++|||++|++++++|+.+|+..
T Consensus        82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~---~~g~~---~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~  155 (213)
T 4edh_A           82 AGVIRPALARGAVVLCDRFTDATYAYQGG---GRGLP---EARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL  155 (213)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred             HHHHHHHHHCCCEEEECccHhHHHHHhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            67788877 69999999999999999864   22321   1234555556666789999999999999999999999743


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++.+.+   ..++++++.+.|.++.  .+ .+++||++.+ ++++.++|.+.|...
T Consensus       156 dr~E~~---~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s-~eeV~~~I~~~l~~~  207 (213)
T 4edh_A          156 DRFEQE---DRRFFEAVRQTYLQRAAQAPERYQVLDAGLP-LAEVQAGLDRLLPNL  207 (213)
T ss_dssp             CTTTTS---CHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             Cccccc---HHHHHHHHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence            333321   3568899999998873  33 5999999987 999999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.94  E-value=6.6e-27  Score=194.23  Aligned_cols=188  Identities=24%  Similarity=0.296  Sum_probs=134.6

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc---------cccCCCCc--hHHHHHHhcccc--chHHHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS---------LKSTPPSS--IMSLREKFDAHD--SLLRRAYYSLGNYI  119 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~---------~~~~p~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~  119 (259)
                      +.+|.+  |+|+|++||||||+++.|+++++..         .+++|+++  +..+++.+.+..  ......+|.++++.
T Consensus        22 m~~g~~--I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~   99 (227)
T 3v9p_A           22 MARGKF--ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRRE   99 (227)
T ss_dssp             -CCCCE--EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ccCCeE--EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            344544  9999999999999999999999654         24567654  355677665432  12334556666654


Q ss_pred             -HHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        120 -AAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       120 -~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                       ..+.+++++ +|..||+|||++|+++|+.+   +.+++   .+....+..|....+.||++|||++|++++.+|+.+|+
T Consensus       100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~---~~gl~---~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A          100 HLALVIEPALARGDWVVSDRFTDATFAYQGG---GRGLP---RDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHHTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHcCCEEEEeccHhHHHHHhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence             556788877 69999999999999999853   22221   12345555666677899999999999999999999997


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        198 NFTLEENELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       198 ~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..++.+.+   ..+|++++.+.|.++.  .+ .+++||++.+ ++++.++|.+.|..+
T Consensus       174 ~~dr~E~~---~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s-~eeV~~~I~~~l~~l  227 (227)
T 3v9p_A          174 MPDKFESE---SDAFFARTRAEYLRRAQEAPHRFVIVDSSEP-IAQIRKQLEGVLAAL  227 (227)
T ss_dssp             CC---CCH---HHHHHHHHHHHHHHHHHHCTTTEEEEETTSC-HHHHHHHHHHHHHHC
T ss_pred             Cccchhhh---hHHHHHHHHHHHHHHHHHhcCCEEEEeCCCC-HHHHHHHHHHHHHhC
Confidence            43333321   4678999999999884  33 5999999987 999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.94  E-value=3.9e-26  Score=190.61  Aligned_cols=185  Identities=24%  Similarity=0.330  Sum_probs=132.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc------ccCCCCc--hHHHHHHhccc---cch---HHHHHHHHHHH-HHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL------KSTPPSS--IMSLREKFDAH---DSL---LRRAYYSLGNY-IAAQD  123 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~------~~~p~~~--~~~~~~~~~~~---~~~---~~~~~~~~~~~-~~~~~  123 (259)
                      .+|+|+|++||||||+++.|++++....      +.+|+++  +..+++.+..+   ..+   ....+|.++++ ...+.
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~  107 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENV  107 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999987543      3466654  36677777421   122   23334566654 45567


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE  202 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~  202 (259)
                      +.+++ +|.+||+|||++|+++|+.+   +.+++   .+....+..|....+.||++|||++|++++++|+.+|+..++.
T Consensus       108 I~paL~~g~~VI~DRy~~S~~AYq~~---~rgl~---~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~  181 (236)
T 3lv8_A          108 IKPALARGEWVVGDRHDMSSQAYQGG---GRQIA---PSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI  181 (236)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHTTT---TTCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred             HHHHHHcCCEEEEeeecchHHhhhhh---ccCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence            88887 69999999999999999864   22321   1234455566666789999999999999999999999753333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        203 ENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       203 ~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +.+   ..++++++.+.|.++.  .+.+++||++.+ ++++.++|.+.|....
T Consensus       182 E~~---~~~~~~rv~~~y~~la~~~~~~~vIDa~~s-ieeV~~~I~~~l~~~l  230 (236)
T 3lv8_A          182 EKM---DISFFERARERYLELANSDDSVVMIDAAQS-IEQVTADIRRALQDWL  230 (236)
T ss_dssp             TTS---CHHHHHHHHHHHHHHHHHCTTEEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred             hhh---HHHHHHHHHHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHHHHHHHHH
Confidence            321   3578899999998884  345999999987 9999999999997654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.93  E-value=1.5e-25  Score=184.62  Aligned_cols=179  Identities=25%  Similarity=0.335  Sum_probs=135.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc--ccccCCC-Cc--hHHHHHHhcccc-c---hHHHHHHHHHHHHHHHHHHHHh-
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA--SLKSTPP-SS--IMSLREKFDAHD-S---LLRRAYYSLGNYIAAQDIKQDL-  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~--~~~~~p~-~~--~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~i~~~l-  128 (259)
                      .+|+|+|++||||||+++.|+++++.  ..+.+|+ ++  +..+++.+.+.. .   .....+|+++++...+.+.+++ 
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~paL~   85 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLL   85 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999986  3456774 33  355677665432 1   2344577788877667788887 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE-ecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL-TVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L-~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                      +|..||+|||++|+.+|+.++.    ++   .....++..+....+.||++||| ++||+++.+|+..|+  ++.|    
T Consensus        86 ~g~~VI~DRy~~S~~ayq~~~~----l~---~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr~E----  152 (216)
T 3tmk_A           86 EGKNIVMDRYVYSGVAYSAAKG----TN---GMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ERYE----  152 (216)
T ss_dssp             TTCEEEEESCHHHHHHHHHTTC----CT---TCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CTTC----
T ss_pred             cCCEEEEeccHhHHHHHHHhcC----CC---HHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--cccc----
Confidence            6999999999999999986432    21   12356677777777899999999 999999999986543  2222    


Q ss_pred             HHHHHHHHHHHHHHhcC------C-CCeEEEe-CCCCCHhhHHHHHHHHHhcc
Q psy16563        208 KNAKFRELLTTIYRNMN------N-PELVFVD-NSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~------~-~~~~vID-~s~~~~eev~~~I~~~l~~~  252 (259)
                       ..+|++++++.|.++.      . ..+++|| ++.+ ++++.++|.+.|...
T Consensus       153 -~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s-~eeV~~~I~~~i~~~  203 (216)
T 3tmk_A          153 -TVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKG-IQEVEALIWQIVEPV  203 (216)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCC-HHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCC-HHHHHHHHHHHHHHH
Confidence             2579999999999883      2 3599999 6666 999999999988765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.93  E-value=2.1e-25  Score=184.55  Aligned_cols=180  Identities=23%  Similarity=0.278  Sum_probs=122.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc----cc---ccCCCCc--hHHHHHHhccccch---HHHHHHHHHHHHHH-HHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA----SL---KSTPPSS--IMSLREKFDAHDSL---LRRAYYSLGNYIAA-QDI  124 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~----~~---~~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~i  124 (259)
                      .++|+|+|++||||||+++.|+++++.    .+   ..+|+++  ++.+++.+.+...+   ....+|+++++... +.+
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~I  100 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKII  100 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHTH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            445999999999999999999999877    22   3467754  35577766543222   23346777776544 458


Q ss_pred             HHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHH
Q psy16563        125 KQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE  203 (259)
Q Consensus       125 ~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~  203 (259)
                      .+++ +|.+||+|||++|+++|+.+   +.+.+   .+....+..|... +.||++|||++|++++++|+ +|+..   +
T Consensus       101 ~paL~~g~~VI~DRy~~S~~Ayq~~---~~g~~---~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr~---E  169 (223)
T 3ld9_A          101 KPSLMQKKIVICDRFIDSTIAYQGY---GQGID---CSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNGY---E  169 (223)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHTT---TTCCC---HHHHHHHHHHHCS-SCCSEEEEEECC------------------
T ss_pred             HHHHhcCCeEEEccchhhHHHhccc---cCCcc---HHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCcc---c
Confidence            8877 68999999999999999753   22221   2234556666666 88999999999999999999 54432   1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC--CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        204 NELKKNAKFRELLTTIYRNMN--NP-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       204 ~~~e~~~~~~~~~~~~y~~~~--~~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .   ...+|++++++.|.++.  .+ ++++||++++ ++++ ++|.+.|..+.
T Consensus       170 ~---~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~s-ieeV-~~I~~~l~~~l  217 (223)
T 3ld9_A          170 F---ADMEFYYRVRDGFYDIAKKNPHRCHVITDKSE-TYDI-DDINFVHLEVI  217 (223)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCTTTEEEEESSCS-SSCC-CHHHHHHHHHH
T ss_pred             c---chHHHHHHHHHHHHHHHHHCCCCEEEEcCCCC-HHHH-HHHHHHHHHHH
Confidence            1   14678899999999883  33 6999999987 9999 99999887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.89  E-value=7.9e-23  Score=170.29  Aligned_cols=184  Identities=19%  Similarity=0.291  Sum_probs=125.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc--ccc--cCCCCc--hHHHHHHhccccch---HHHHHHHHHHHH-HHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA--SLK--STPPSS--IMSLREKFDAHDSL---LRRAYYSLGNYI-AAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~--~~~--~~p~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~i~~~l  128 (259)
                      ++|+|+|++||||||+++.|+++++.  .++  .+|..+  +..+++.+.+...+   ....++.+.++. ..+.+.+.+
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l  106 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL  106 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999974  222  344443  34566665543211   222334444432 233456666


Q ss_pred             -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563        129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL  206 (259)
Q Consensus       129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~  206 (259)
                       +|..||+|||++++.+|+.+   +.+++   .+...++..+....+.||++|||++|++++.+|+.+|+.. ++.+.  
T Consensus       107 ~~g~~Vi~DRy~~s~~ayqg~---~r~~~---~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~--  178 (229)
T 4eaq_A          107 KEGKVVLCDRYIDSSLAYQGY---ARGIG---VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQ--  178 (229)
T ss_dssp             HTTCEEEEECCHHHHCCCCCC---CSCSC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCH--
T ss_pred             HCCCEEEECCchhHHHHHHHh---hcCCC---HHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhh--
Confidence             68899999999999999742   12221   1123345555556678999999999999999999998632 22221  


Q ss_pred             HHHHHHHHHHHHHHHhcCC--C-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        207 KKNAKFRELLTTIYRNMNN--P-ELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~--~-~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                       ...++++++.+.|.++..  + .+++||++++ ++++.++|.+.|...
T Consensus       179 -~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s-~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          179 -EDLKFHEKVIEGYQEIIHNESQRFKSVNADQP-LENVVEDTYQTIIKY  225 (229)
T ss_dssp             -HHHHHHHHHHHHHHHHTTTCTTTEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-HHHHHHHHHHHHHHH
Confidence             145688999999998853  2 4899999987 999999999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.82  E-value=6.4e-19  Score=141.89  Aligned_cols=178  Identities=24%  Similarity=0.355  Sum_probs=114.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh---hccccc--CCCCc--hHHHHHHhccccchHH---HHHHHHHH-HHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL---KASLKS--TPPSS--IMSLREKFDAHDSLLR---RAYYSLGN-YIAAQDIKQD  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~--~p~~~--~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~i~~~  127 (259)
                      ++|+|+|++||||||+++.|++++   |..++.  +|...  +..+++.+.+. .+..   ..++...+ ..+.+.+.+.
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999998   555543  34332  24566666442 2211   12222222 2334455665


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      + ++..|++|||++++.++...   +...  . .+....+..+......||++|||+||++++.+|+.+|+..+.     
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~---~~~~--~-~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~-----  148 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGY---GKGL--D-VEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFEN-----  148 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTT---TTCC--C-HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCC-----
T ss_pred             HhCCCEEEECcchhHHHHHccc---cCCC--C-HHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccch-----
Confidence            5 68899999999887766421   1111  0 112222222333234699999999999999999987764331     


Q ss_pred             HHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        207 KKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                         .++.+++...|.++.  ...+++||++++ ++++.++|.+.+...
T Consensus       149 ---~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          149 ---KEFLEKVRKGFLELAKEEENVVVIDASGE-EEEVFKEILRALSGV  192 (195)
T ss_dssp             ---HHHHHHHHHHHHHHHHHSTTEEEEETTSC-HHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHHHHhhCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence               124455555565553  135799999876 999999999998765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.82  E-value=4.6e-19  Score=143.82  Aligned_cols=186  Identities=22%  Similarity=0.267  Sum_probs=107.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHHhCCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQD---IKQDLQKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~l~~~~vi~  135 (259)
                      ++|+|+|++||||||+++.|+++++..++.+|.... .+.+.|..++.-   .-+..+.......   +.+.+....+|+
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~vi~   76 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEEN-PYFEQYYKDLKK---TVFKMQIYMLTARSKQLKQAKNLENIIF   76 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGC-TTHHHHTTCHHH---HHHHHHHHHHHHHHHHHC------CEEE
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEccccccc-HHHHHHHhCccc---cchhHHHHHHHHHHHHHHHhhccCCEEE
Confidence            369999999999999999999999987776654211 112233222110   1111111222222   333333335999


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhc-cccc-------CCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKD-------LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~-------~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                      ||++.++.+|+.....++.+.......+..++. +...       ...||++|||++|++++.+|+.+|+..  .+... 
T Consensus        77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~--~~~~~-  153 (205)
T 2jaq_A           77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRS--EELLI-  153 (205)
T ss_dssp             ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCH--HHHHS-
T ss_pred             EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCCh--hhhcC-
Confidence            999999888765321111110000011112222 2222       257999999999999999999988642  11100 


Q ss_pred             HHHHHHHHHHHHHHhc----C-CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        208 KNAKFRELLTTIYRNM----N-NPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~----~-~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                       ...+.+++...|.++    . ..++++||++++ ++++.++|.+.+..+.
T Consensus       154 -~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~-~~~v~~~I~~~l~~~~  202 (205)
T 2jaq_A          154 -GEEYWETLNKNYEEFYKQNVYDFPFFVVDAELD-VKTQIELIMNKLNSIK  202 (205)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSC-HHHHHHHHHHHHHHC-
T ss_pred             -cHHHHHHHHHHHHHHHHHccccCcEEEEECCCC-HHHHHHHHHHHHHHhc
Confidence             113445555555542    2 335899999985 9999999999997654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.81  E-value=1.5e-18  Score=141.71  Aligned_cols=182  Identities=20%  Similarity=0.261  Sum_probs=115.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc--cc--cCCCCchHHHHHHhcccc---ch---HHHHHHHHHHH-HHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS--LK--STPPSSIMSLREKFDAHD---SL---LRRAYYSLGNY-IAAQDIKQD  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~--~~--~~p~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~-~~~~~i~~~  127 (259)
                      ++|+|+|++||||||+++.|+++++..  ++  .+|.  ...+++.+.+..   .+   ....++...++ ...+.+.+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~   82 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNS--SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPM   82 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTC--CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCc--HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999864  22  2332  234455443321   11   11223333332 223344555


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh-hccCCchH---
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKNFTLE---  202 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~-~R~~~~~~---  202 (259)
                      + .+..||+|+|+.+..+|+.    +++.+      ...+..+......||++|||++|++++.+|+. +|+..++.   
T Consensus        83 l~~g~~vi~D~~~~~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g  152 (213)
T 2plr_A           83 LKSGFIVISDRYIYTAYARDS----VRGVD------IDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAG  152 (213)
T ss_dssp             HHTTCEEEEESCHHHHHHHHH----TTTCC------HHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTT
T ss_pred             HhCCCEEEEeCcHhHHHHHHH----hhCCC------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccc
Confidence            5 6889999999998877762    22221      12222222223459999999999999999999 88631220   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        203 ------ENELKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       203 ------~~~~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                            .+..+....+.+++...|.++.. ..+++||++.+ ++++.++|.+.+..+.
T Consensus       153 ~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~-~e~v~~~I~~~l~~~~  209 (213)
T 2plr_A          153 ADIFPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKT-PKEIQIQIRKFVGELI  209 (213)
T ss_dssp             TTTCTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence                  00011124567777778877642 25899999876 9999999999987653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.80  E-value=1.4e-18  Score=137.18  Aligned_cols=165  Identities=21%  Similarity=0.250  Sum_probs=106.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRF  138 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~  138 (259)
                      ++|+|+|++||||||+++.|++.++..++..+.     +.....   ..  ..+        .........+..|++||+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~-----~~~~~~---~~--~~~--------~~~~~~l~~~~~vi~dr~   63 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS-----FELAKS---GN--EKL--------FEHFNKLADEDNVIIDRF   63 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC-----HHHHTT---CH--HHH--------HHHHHHHTTCCSEEEESC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc-----cccchh---HH--HHH--------HHHHHHHHhCCCeEEeee
Confidence            469999999999999999999999987765431     111000   00  011        112223336889999999


Q ss_pred             ccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q psy16563        139 WHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT  218 (259)
Q Consensus       139 ~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~  218 (259)
                      ..++.+|+..   +.......+.....+   ......||++|||++|++++.+|+.+|++....       .++.+++.+
T Consensus        64 ~~~~~v~~~~---~~~~~~~~~~~~~~l---~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~-------~~~~~~~~~  130 (173)
T 3kb2_A           64 VYSNLVYAKK---FKDYSILTERQLRFI---EDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIE-------GKDIDSILE  130 (173)
T ss_dssp             HHHHHHHTTT---BTTCCCCCHHHHHHH---HHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCC-------HHHHHHHHH
T ss_pred             ecchHHHHHH---HHHhhHhhHHHHHHH---hccCCCCCEEEEEeCCHHHHHHHHHhcCCcchh-------hhHHHHHHH
Confidence            9888777531   111101001111111   112356899999999999999999998642211       124455556


Q ss_pred             HHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        219 IYRNMN---NPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       219 ~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .|.+..   ...+++||+++.+++++.++|.+.++..++
T Consensus       131 ~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          131 LYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHH  169 (173)
T ss_dssp             HHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence            666542   335899999975599999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.80  E-value=1.5e-18  Score=141.07  Aligned_cols=174  Identities=22%  Similarity=0.302  Sum_probs=114.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh-hcccc--cCCC-Cc--hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHh-
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLK--STPP-SS--IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQDL-  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~--~~p~-~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~l-  128 (259)
                      ++|+|+|++||||||+++.|++++ |..++  .+|. .+  +..+++.|.....+.   ...++...++...+.+.+.+ 
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~   84 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQLE   84 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999998 44443  4444 22  355677775543221   12233333332224556655 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ++..||+|||+.++.+|+..    ++++      .+.+..+......||++|||++|++++.+   +|+.. +.+     
T Consensus        85 ~~~~vi~Dr~~~s~~~~~~~----~g~~------~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d-~~e-----  145 (204)
T 2v54_A           85 QGITLIVDRYAFSGVAYAAA----KGAS------MTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE-IYE-----  145 (204)
T ss_dssp             TTCEEEEESCHHHHHHHHHH----TTCC------HHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS-TTC-----
T ss_pred             CCCEEEEECchhhHHHHHHc----cCCC------HHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc-ccc-----
Confidence            68899999999998888742    2221      12222222233579999999999999988   45421 111     


Q ss_pred             HHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        209 NAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..++.+++...|.++..   ..+++||++.+ ++++.++|.+.+...
T Consensus       146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~-~~~v~~~i~~~l~~~  191 (204)
T 2v54_A          146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFE-EDVKKELIKNIVIEA  191 (204)
T ss_dssp             CSHHHHHHHHHHHHHHTTCSSCEEEECTTSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHHHH
Confidence            12466777777876632   35799999876 999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.80  E-value=4.1e-18  Score=139.45  Aligned_cols=178  Identities=26%  Similarity=0.273  Sum_probs=112.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCC--Cc-hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPP--SS-IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~  126 (259)
                      .++|+|+|++||||||+++.|+++++..++     .+|.  .. +..+++.|.....+.   ...+|...++...+.+.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~   88 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKE   88 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999999886543     2343  12 345677776532221   122333333322234556


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE  205 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~  205 (259)
                      .+ .+..||+|||+.++.+|....   .++    .  ...+..+......||++|||++|++++.+|+..|.+  +.+  
T Consensus        89 ~l~~~~~vi~dr~~~s~~~~~~~~---~~~----~--~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~--~~~--  155 (215)
T 1nn5_A           89 KLSQGVTLVVDRYAFSGVAFTGAK---ENF----S--LDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE--RYE--  155 (215)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTS---TTC----C--HHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C--TTC--
T ss_pred             HHHCCCEEEEeCCcccHHHHHhhc---CCC----C--HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcc--ccc--
Confidence            55 688999999999887775321   011    1  122222222335689999999999999999964422  111  


Q ss_pred             HHHHHHHHHHHHHHHHhcCC---CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRNMNN---PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~---~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                         ..++.+++...|.++..   .++++||++.+ ++++.++|.+.+..+
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~e~~~~~i~~~l~~~  201 (215)
T 1nn5_A          156 ---NGAFQERALRCFHQLMKDTTLNWKMVDASKS-IEAVHEDIRVLSEDA  201 (215)
T ss_dssp             ---SHHHHHHHHHHHHHHTTCTTSCEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHhCCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence               12355667777776642   35799998776 999999999988764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.78  E-value=1.7e-18  Score=141.53  Aligned_cols=178  Identities=25%  Similarity=0.318  Sum_probs=116.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCC--Cc-hHHHHHHhccccchH---HHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPP--SS-IMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~  126 (259)
                      .++|+|+|++||||||+++.|+++++..++     .+|.  .. +..+++.+.....+.   ...+|..+++...+.+.+
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   89 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKS   89 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999999987643     3343  12 244566665432221   123333333322234566


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE  205 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~  205 (259)
                      .+ .+..||+|+|+.+..+|...+.   ++    .  ...+..+......||++|||++|++++.+|+.+|.+.  .+  
T Consensus        90 ~l~~~~~vi~D~~~~~~~~~~~~~~---~~----~--~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r--~~--  156 (212)
T 2wwf_A           90 LLLKGIWVVCDRYAYSGVAYSSGAL---NL----N--KTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI--YE--  156 (212)
T ss_dssp             HHHHTCEEEEECCHHHHHHHHHHHS---CC----C--HHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSST--TC--
T ss_pred             HHhCCCEEEEecchhhHHHHHHhcc---CC----C--HHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCccc--cc--
Confidence            55 5788999999988776654320   11    1  1222222233356999999999999999999765321  11  


Q ss_pred             HHHHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                         ..++.+++...|.+... ..+++||++.+ ++++.++|.+.+..+
T Consensus       157 ---~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          157 ---KVETQKKIYETYKHFAHEDYWINIDATRK-IEDIHNDIVKEVTKI  200 (212)
T ss_dssp             ---SHHHHHHHHHHGGGGTTCTTEEEEECSSC-HHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHHHHHHHhccCCEEEEECCCC-HHHHHHHHHHHHHHh
Confidence               12456777788877753 35899999976 999999999999776

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.78  E-value=2.8e-20  Score=154.85  Aligned_cols=183  Identities=15%  Similarity=0.211  Sum_probs=95.3

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCCCc-----hHHHHHHhccccchHHHHHHHHHHHHH----HH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSS-----IMSLREKFDAHDSLLRRAYYSLGNYIA----AQ  122 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  122 (259)
                      ..+|.  +|+|+|++||||||+++.|+..-+.. +..+|...     ...+++.++..+.   ..-+..+...+    ..
T Consensus        17 ~~~g~--~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~l~~~~~~   91 (230)
T 2vp4_A           17 GTQPF--TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPK---KWAMPFQSYVTLTMLQS   91 (230)
T ss_dssp             TCCCE--EEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHH---HHHHHHHHHHHHHHHHH
T ss_pred             CCCce--EEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChH---hhhhhhHHHHHHHHHHH
Confidence            34444  49999999999999999999872212 22333211     1233443322111   00111111111    11


Q ss_pred             H----HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-----cCCCCCEEEEEecCHHHHHHH
Q psy16563        123 D----IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-----DLMKPDLVIYLTVSEAIRLQR  192 (259)
Q Consensus       123 ~----i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~pdlvI~L~a~~ev~~~R  192 (259)
                      .    +.+.+ .+..|++|||.+++.+|+..     +++   ++....+..|..     ....||++|||++|++++++|
T Consensus        92 ~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~-----~l~---~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~R  163 (230)
T 2vp4_A           92 HTAPTNKKLKIMERSIFSARYCFVENMRRNG-----SLE---QGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYER  163 (230)
T ss_dssp             HHCCCCSSEEEEESCHHHHHHTHHHHHHHHT-----SSC---HHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHH
T ss_pred             HHhccccCceeecCCccccHHHHHHHHHHcC-----CCC---hHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHH
Confidence            1    11222 35677788888888888642     221   111222222221     356799999999999999999


Q ss_pred             HhhccCCchHHHHHHHHHHHHHHHHHHHHhcC------CC-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        193 LSRRKNFTLEENELKKNAKFRELLTTIYRNMN------NP-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       193 l~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~------~~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +.+|+...  +.  ....++++++...|.++.      .+ ++++||++++ ++++.++|.+.+..+.
T Consensus       164 i~~R~r~~--e~--~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~-~eev~~~I~~~l~~~~  226 (230)
T 2vp4_A          164 IRQRARSE--ES--CVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLN-LENIGTEYQRSESSIF  226 (230)
T ss_dssp             HHHHCCGG--GT--TCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred             HHHcCCcc--cc--cCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCC-HHHHHHHHHHHHHHHh
Confidence            99886421  11  113467888888888772      23 3799999987 9999999999887653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.78  E-value=2.6e-20  Score=157.95  Aligned_cols=188  Identities=17%  Similarity=0.144  Sum_probs=111.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCC--------------------chHHHHHHhccccc-h--HHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPS--------------------SIMSLREKFDAHDS-L--LRRAY  112 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~--------------------~~~~~~~~~~~~~~-~--~~~~~  112 (259)
                      +.++|+|+|++||||||+++.|++++ +..++.+|..                    .+..+++.|+.++. +  ....+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~  102 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTY  102 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCchHHHHHhCchhcchHHHHH
Confidence            34569999999999999999999998 4444544321                    12246666655432 1  11111


Q ss_pred             --HHHHHHHHHH---H----HHHHh-CCCcEEEcCCccchhhhhhhhhhccccC-C-CCCcchhhhhcccccCCCCCEEE
Q psy16563        113 --YSLGNYIAAQ---D----IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSD-L-KLPDEDDDIYSWPKDLMKPDLVI  180 (259)
Q Consensus       113 --~~~~~~~~~~---~----i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~-~-~l~~~~~~l~~~~~~~~~pdlvI  180 (259)
                        +...++....   .    +.+.+ .|..||+|||++++.+|+....   +.+ . ...+....+..+......||++|
T Consensus       103 ~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~---~~~e~~~~~~~~~~l~~~~~~~~~pd~vi  179 (263)
T 1p5z_B          103 ACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECM---NETEWTIYQDWHDWMNNQFGQSLELDGII  179 (263)
T ss_dssp             HHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHCCSEEE
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhhhccCCCCeEE
Confidence              1111111111   1    12223 4788999999999888864210   000 0 00011112222221124699999


Q ss_pred             EEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-------------CCCCeEEEeCCCCCHhhHHHHHHH
Q psy16563        181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-------------NNPELVFVDNSEKSVHESSNDIVE  247 (259)
Q Consensus       181 ~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-------------~~~~~~vID~s~~~~eev~~~I~~  247 (259)
                      ||++|++++++|+.+|++.... .   ...++++++...|+.+             ...++++||++++ ++++.++|.+
T Consensus       180 ~L~~~~e~~~~Ri~~R~r~~~~-~---~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~-~eev~~~I~~  254 (263)
T 1p5z_B          180 YLQATPETCLHRIYLRGRNEEQ-G---IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNED-FKDKYESLVE  254 (263)
T ss_dssp             EEECCHHHHHHHHHHHCCGGGT-T---CCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSC-HHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHhcCCcccc-C---ccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCC-HHHHHHHHHH
Confidence            9999999999999988642110 0   0234555555555543             1234899999985 9999999999


Q ss_pred             HHhcc
Q psy16563        248 LIHNL  252 (259)
Q Consensus       248 ~l~~~  252 (259)
                      .|...
T Consensus       255 ~l~~~  259 (263)
T 1p5z_B          255 KVKEF  259 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.77  E-value=1.7e-19  Score=150.99  Aligned_cols=188  Identities=14%  Similarity=0.117  Sum_probs=109.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh-cccccCCCCc-----------------hHHHHHHhccccc---hHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK-ASLKSTPPSS-----------------IMSLREKFDAHDS---LLRRAYYSLGN  117 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~-~~~~~~p~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~~  117 (259)
                      ++|+|+|++||||||+++.|+++++ ...+.+|...                 +..+++.++.++.   +....++...+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~r   82 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSR   82 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCeeeecchhhhccccccccccccccccCCchHHHHHhCcccchhHHHHHHHHHH
Confidence            4599999999999999999999994 4455666532                 1346666664432   11112221211


Q ss_pred             HHH-H----HHHH----HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHH
Q psy16563        118 YIA-A----QDIK----QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEA  187 (259)
Q Consensus       118 ~~~-~----~~i~----~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~e  187 (259)
                      +.. .    +.+.    +.+ .+..|++|||.+++.+|+....-+.... ...+....+..+......||++|||++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~-~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~  161 (241)
T 2ocp_A           83 LKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWH-IYQDWHSFLLWEFASRITLHGFIYLQASPQ  161 (241)
T ss_dssp             HHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHH-HHHHHHHHHHHHSHHHHCCCEEEEEECCHH
T ss_pred             HHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHhcccccCCCEEEEEECCHH
Confidence            111 0    0111    111 3556777777777776653210000000 000001111112212246999999999999


Q ss_pred             HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-------------CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        188 IRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-------------NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       188 v~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-------------~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++.+|+.+|+..... .   ...++++++.+.|..+.             ..++++||++++ ++++.+.+.++++.+
T Consensus       162 ~~~~R~~~R~r~~e~-~---~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~-~~~v~~~i~~i~~~i  234 (241)
T 2ocp_A          162 VCLKRLYQRAREEEK-G---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDD-FSEEVTKQEDLMREV  234 (241)
T ss_dssp             HHHHHHHHSCCTTTT-T---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSC-TTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccc-c---CCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCC-hhhCHHHHHHHHHHH
Confidence            999999998753211 0   02457788888888752             235899999995 888777777776654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.77  E-value=3.9e-17  Score=134.40  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=102.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH--------HHHHHHHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG--------NYIAAQDIKQ  126 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~i~~  126 (259)
                      +.++|+|.|||||||+|+|+.|++.++..+++.    ++.+|+.+..+..+...  .+....        ...+.+.+..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst----GdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~  103 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS----GDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK  103 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH----HHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH----HHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence            456799999999999999999999999988753    55666665554433211  111100        1122233333


Q ss_pred             Hh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHH
Q psy16563        127 DL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEEN  204 (259)
Q Consensus       127 ~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~  204 (259)
                      .. ....+|+|.|+.+..                     +...+......++++|+|+||.+++.+|+..|... .+.++
T Consensus       104 ~~~~~~g~ilDGfPRt~~---------------------Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD  162 (217)
T 3umf_A          104 LVDKNCHFLIDGYPRELD---------------------QGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDD  162 (217)
T ss_dssp             HTTTCSEEEEETBCSSHH---------------------HHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHH
T ss_pred             ccccccCcccccCCCcHH---------------------HHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCC
Confidence            22 356789998765421                     11111122356899999999999999999999632 22222


Q ss_pred             HHHH----HHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        205 ELKK----NAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       205 ~~e~----~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ..+.    ...|.+.   +.+.|.+  ...++.||++++ +++|+++|.+.|++++
T Consensus       163 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~--~~~l~~Idg~~~-~eeV~~~I~~~l~k~G  215 (217)
T 3umf_A          163 NEETIVKRFRTFNELTKPVIEHYKQ--QNKVITIDASGT-VDAIFDKVNHELQKFG  215 (217)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHT--TTCEEEEETTSC-HHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHHHHcC
Confidence            2111    1111111   2222322  124789999987 9999999999998764

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.74  E-value=7.5e-18  Score=146.74  Aligned_cols=156  Identities=14%  Similarity=0.142  Sum_probs=99.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc----ccCCCC---c--h-HHHHHHhcc-----ccchHH----------HHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL----KSTPPS---S--I-MSLREKFDA-----HDSLLR----------RAYY  113 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~----~~~p~~---~--~-~~~~~~~~~-----~~~~~~----------~~~~  113 (259)
                      ++|+|+|++||||||+++.|+++++...    +.+|++   +  . +.+++.+.+     +..+..          ..+|
T Consensus         8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~lQLlf   87 (334)
T 1p6x_A            8 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQSRF   87 (334)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHHHHHH
Confidence            3499999999999999999999997542    567763   1  2 445555431     111110          1122


Q ss_pred             HH----HHHHHHHHHH-----HHh-CCCcEEEcCCccchhh-hhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE
Q psy16563        114 SL----GNYIAAQDIK-----QDL-QKQPVVMDRFWHSTSA-YGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL  182 (259)
Q Consensus       114 ~~----~~~~~~~~i~-----~~l-~~~~vi~Dr~~~s~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L  182 (259)
                      +.    ..+++.+.+.     +.+ .|..||+|||++++.+ |+.++..+++++   .+....+..+......||++|||
T Consensus        88 ~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~---~~~i~~l~~~~~~~~~PDLtIyL  164 (334)
T 1p6x_A           88 TTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMS---MCALMAMVATLPREPQGGNIVVT  164 (334)
T ss_dssp             HHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSC---HHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             HhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCC---HHHHHHHHHHccCCCCCCEEEEE
Confidence            21    1122222221     444 3678999999999987 443322233331   22344555565555789999999


Q ss_pred             ecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        183 TVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       183 ~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      ++|++++++|+.+|++. ++.      ..+|++++++.|.++
T Consensus       165 d~~pe~~l~RI~~RgR~~Eri------~~eyl~~vr~~Y~~l  200 (334)
T 1p6x_A          165 TLNVEEHIRRLRTRARIGEQI------DITLIATLRNVYFML  200 (334)
T ss_dssp             ECCHHHHHHHHHHHSCTTCCC------CHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence            99999999999988742 221      346889999999887

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.73  E-value=1.7e-16  Score=129.81  Aligned_cols=166  Identities=23%  Similarity=0.320  Sum_probs=102.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHHh-CCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQDL-QKQ  131 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~l-~~~  131 (259)
                      |+|+|.|||||||+|+|+.|++.++..+++.    ++-+|+.+..+..+...  .+....    .......+...+ +..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~ist----GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~   76 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHIST----GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG   76 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEH----HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcH----HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC
Confidence            5799999999999999999999999988853    55666665544433211  111110    123334455544 456


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-----------
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-----------  199 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-----------  199 (259)
                      .+|+|.|+.+....                  ..+..++ .....+|.+|+|+||.+++.+|+..|.-.           
T Consensus        77 ~~ilDGfPRt~~Qa------------------~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~  138 (206)
T 3sr0_A           77 NVIFDGFPRTVKQA------------------EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKY  138 (206)
T ss_dssp             CEEEESCCCSHHHH------------------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTT
T ss_pred             ceEecCCchhHHHH------------------HHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeec
Confidence            78999887653211                  1111111 22356899999999999999999988410           


Q ss_pred             ----------chHHHHHHHHHHHHHHHHHHHHhc--------CC-CCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        200 ----------TLEENELKKNAKFRELLTTIYRNM--------NN-PELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       200 ----------~~~~~~~e~~~~~~~~~~~~y~~~--------~~-~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                                .+.++.    .+..++..+.|.+.        .. ..+..||++++ +++|+++|.++|..
T Consensus       139 ~pp~~g~~l~~r~DD~----~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~-~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          139 NPPPPGVKVIQREDDK----PEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKP-VEEVYRQVLEVIGD  204 (206)
T ss_dssp             BCCCTTCCCBCCGGGS----HHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSC-HHHHHHHHHHHHC-
T ss_pred             cCCCCCceecccCCCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHcc
Confidence                      012221    11222222223322        12 23788999997 99999999999864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.72  E-value=1.1e-17  Score=145.59  Aligned_cols=156  Identities=13%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc---ccccCCCCc-----h-HHHHHHhcccc-----chHH--HHH--HHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA---SLKSTPPSS-----I-MSLREKFDAHD-----SLLR--RAY--YSLGNYIA  120 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~---~~~~~p~~~-----~-~~~~~~~~~~~-----~~~~--~~~--~~~~~~~~  120 (259)
                      ++|+|+|++||||||+++.|++++..   ..+.+|++.     + +.+++.+.+..     .+..  ...  +.++.+.+
T Consensus         5 ~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~qL~fa   84 (331)
T 1e2k_A            5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMG   84 (331)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999863   345677531     2 45665554321     1111  111  11111121


Q ss_pred             ------HHHHH----HH------h-CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE
Q psy16563        121 ------AQDIK----QD------L-QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL  182 (259)
Q Consensus       121 ------~~~i~----~~------l-~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L  182 (259)
                            ++++.    +.      + .|..||+|||++++. +|+.++..+++++   .+....+..+......||+++++
T Consensus        85 ~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~---~~~~~~l~~~~~~~~ppdlt~ll  161 (331)
T 1e2k_A           85 MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMT---PQAVLAFVALIPPTLPGTNIVLG  161 (331)
T ss_dssp             HHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSC---HHHHHHHHHTCCCCCTTCEEEEE
T ss_pred             hhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCC---HHHHHHHHHhcccCCCCeEEEEE
Confidence                  33332    22      2 478899999999997 6885543334432   22344455555444567899999


Q ss_pred             ecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        183 TVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       183 ~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      ++|++++++|+.+|++. ++.      ..+|++++++.|.++
T Consensus       162 dl~pe~~l~RI~~Rgr~~Eri------~~~yl~rvr~~Y~~l  197 (331)
T 1e2k_A          162 ALPEDRHIDRLAKRQRPGERL------DLAMLAAIRRVYGLL  197 (331)
T ss_dssp             ECCHHHHHHHHHHSCCTTCCC------CHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence            99999999999988742 221      356888888888765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=99.72  E-value=1.7e-17  Score=146.14  Aligned_cols=157  Identities=13%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc---ccccCCCCc-----h-HHHHHHhccc-----cchHH--HHHH--HHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA---SLKSTPPSS-----I-MSLREKFDAH-----DSLLR--RAYY--SLGNYI  119 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~---~~~~~p~~~-----~-~~~~~~~~~~-----~~~~~--~~~~--~~~~~~  119 (259)
                      .++|+|+|++||||||+++.|++++..   ..+.+|+..     + +.+++.+.+.     ..+..  ...|  ..+.++
T Consensus        49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~~QL~f  128 (376)
T 1of1_A           49 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITM  128 (376)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHHHHHHH
Confidence            345999999999999999999999863   345677521     2 4555555332     11111  1111  111122


Q ss_pred             H------HHHH----HHH------h-CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEE
Q psy16563        120 A------AQDI----KQD------L-QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIY  181 (259)
Q Consensus       120 ~------~~~i----~~~------l-~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~  181 (259)
                      +      .+++    .+.      + .|..||+|||++++. +|+.+...+++++   .+....+..+......||++++
T Consensus       129 a~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~---~~~i~~l~~~~~~~~ppdlt~L  205 (376)
T 1of1_A          129 GMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMT---PQAVLAFVALIPPTLPGTNIVL  205 (376)
T ss_dssp             HHHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSC---HHHHHHHHHTCCCCCTTCEEEE
T ss_pred             hccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCC---HHHHHHHHHhcccCCCCeEEEE
Confidence            2      3332    222      2 478899999999997 6885543334432   2234445555544455788999


Q ss_pred             EecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        182 LTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       182 L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      +++|++++++|+.+|++. ++.      ..+|++++++.|.++
T Consensus       206 ldl~pe~~l~RI~~RgR~~Eri------~leyl~rVr~~Y~~l  242 (376)
T 1of1_A          206 GALPEDRHIDRLAKRQRPGERL------DLAMLAAIRRVYGLL  242 (376)
T ss_dssp             EECCHHHHHHHHHHSCCTTCCC------CHHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhcCCCcccC------CHHHHHHHHHHHHHH
Confidence            999999999999988742 221      356888888888765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.71  E-value=3.6e-16  Score=125.66  Aligned_cols=172  Identities=16%  Similarity=0.182  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCC-c-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPS-S-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      ++|+|+|++||||||+++.|++.++..++..         |+. . ...+++.+..............-.......+...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~   83 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAAN   83 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccc
Confidence            4599999999999999999999998765531         111 1 2223333322111101111010001112222222


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chH----
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLE----  202 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~----  202 (259)
                      ..+..+|+|+++.+...+..                  +..++.....||++|||++|++++.+|+.+|+.. .+.    
T Consensus        84 ~~~~~vi~dg~~~~~~~~~~------------------~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~  145 (196)
T 1tev_A           84 AQKNKFLIDGFPRNQDNLQG------------------WNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR  145 (196)
T ss_dssp             TTCCEEEEESCCCSHHHHHH------------------HHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCH
T ss_pred             cCCCeEEEeCCCCCHHHHHH------------------HHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCH
Confidence            24788999988776433221                  1111122245789999999999999999888521 111    


Q ss_pred             HHHHHHHHHHHHHHH---HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        203 ENELKKNAKFRELLT---TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       203 ~~~~e~~~~~~~~~~---~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      +........+.+...   +.|.+.  ..+++||++.+ +++++++|.+.+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~id~~~~-~~~v~~~i~~~l~~  194 (196)
T 1tev_A          146 ESLEKRIQTYLQSTKPIIDLYEEM--GKVKKIDASKS-VDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEETTSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHh
Confidence            110011112222222   234332  23679999965 99999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.71  E-value=2.2e-16  Score=126.72  Aligned_cols=171  Identities=15%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCC-chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPS-SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      .++|+|+|++||||||+++.|++.++..++..         ++. .+..+++.|...........    ...+...+.+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~l~~~i~~~   81 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT----VKLLKNAIDAN   81 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHH----HHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHhc
Confidence            35699999999999999999999998766532         111 12334444433211000000    11112222221


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHH
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENEL  206 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~  206 (259)
                       .+..+|+|+++.+...+.                  .+..+......||++|||++|++++.+|+.+|+.. .+.+...
T Consensus        82 -~~~~vi~d~~~~~~~~~~------------------~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~  142 (194)
T 1qf9_A           82 -QGKNFLVDGFPRNEENNN------------------SWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNI  142 (194)
T ss_dssp             -TTCCEEEETCCCSHHHHH------------------HHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSH
T ss_pred             -CCCCEEEeCcCCCHHHHH------------------HHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCH
Confidence             577899998766432211                  11111111235889999999999999999988632 1111110


Q ss_pred             HH----HHHHHHHHHHHHHhcC-CCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        207 KK----NAKFRELLTTIYRNMN-NPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       207 e~----~~~~~~~~~~~y~~~~-~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +.    ...+.+.....+..+. ...+++||++.+ ++++.++|.+.+...
T Consensus       143 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~i~~~l~~~  192 (194)
T 1qf9_A          143 ESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRD-VNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCC-HHHHHHHHHHHHHHc
Confidence            00    1111111112122221 123689999966 999999999998763

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.71  E-value=1.4e-16  Score=128.43  Aligned_cols=166  Identities=15%  Similarity=0.210  Sum_probs=95.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      .++|+|+|++||||||+++.|+++++..++..         ++.. +..+++.+...........    ...+.+.+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~   84 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV----LDMLRDAMVAK   84 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHH----HHHHHHHHHhc
Confidence            34699999999999999999999998776532         1111 2233333332111111111    11233444454


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE  205 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~  205 (259)
                      + .+..||+|+|+...                     .....|......||++|||++|++++.+|+..|+.. .+.+..
T Consensus        85 ~~~~~~vi~d~~~~~~---------------------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~  143 (196)
T 2c95_A           85 VNTSKGFLIDGYPREV---------------------QQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDN  143 (196)
T ss_dssp             TTTCSCEEEESCCCSH---------------------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGS
T ss_pred             cccCCcEEEeCCCCCH---------------------HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCC
Confidence            4 57889999765431                     011111111245899999999999999999988621 111111


Q ss_pred             HHHHHHHHHHHHHHHHh-------cCCC-CeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRN-------MNNP-ELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~-------~~~~-~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                         ...+.+++...+..       .... .+++||++.+ +++++++|.+.+..+
T Consensus       144 ---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~-~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          144 ---EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGS-VDSVFSQVCTHLDAL  194 (196)
T ss_dssp             ---HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSC-HHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHHHHh
Confidence               01112222222211       1111 2578999866 999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.70  E-value=4.7e-16  Score=125.57  Aligned_cols=166  Identities=15%  Similarity=0.193  Sum_probs=96.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCC---------CCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      .++|+|+|++||||||+++.|+++++..++...         +.. +..+.+.+...........    ...+.+.+.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~----~~~~~~~i~~~   87 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV----LELLKEAMVAS   87 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHH----HHHHHHHHhcc
Confidence            346999999999999999999999997765320         011 1223333332111111111    11223334444


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHH
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENE  205 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~  205 (259)
                      + .+..||+|+++.+....                  ..+   ......||++|||++|++++.+|+.+|+.. .+.+..
T Consensus        88 ~~~~~~vi~dg~~~~~~~~------------------~~l---~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~  146 (199)
T 2bwj_A           88 LGDTRGFLIDGYPREVKQG------------------EEF---GRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDT  146 (199)
T ss_dssp             TTSCSCEEEETCCSSHHHH------------------HHH---HHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHH
T ss_pred             cccCccEEEeCCCCCHHHH------------------HHH---HHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCC
Confidence            4 57889999876643110                  111   111235899999999999999999999742 222221


Q ss_pred             HHHHHHHHHHHHHHHHh-------cCCCC-eEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        206 LKKNAKFRELLTTIYRN-------MNNPE-LVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       206 ~e~~~~~~~~~~~~y~~-------~~~~~-~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .   ..+.+++...+..       ..... +++||++.+ +++++++|.+.+...
T Consensus       147 ~---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          147 T---KTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT-PEDVFLQLCTAIDSI  197 (199)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSC-HHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC-HHHHHHHHHHHHHHh
Confidence            1   1222222222211       11123 588998766 999999999988754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.70  E-value=1.3e-18  Score=142.50  Aligned_cols=184  Identities=18%  Similarity=0.229  Sum_probs=111.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCC--c--hHHHHHHhccc------cchHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPS--S--IMSLREKFDAH------DSLLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~--~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  123 (259)
                      ++|+|+|++||||||+++.|++.++...     +.+|+.  +  .+.++......      .......++...++...+.
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence            3699999999999999999999997532     334431  1  23455444221      1122223344444322344


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc---ccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP---KDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      +.+.+ .+..||+|||+.+..+|+.+.......    ......+..+.   ...+.||++|||++|++++.+|+..|+..
T Consensus        81 i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~  156 (214)
T 1gtv_A           81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAA----GKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQR  156 (214)
T ss_dssp             HHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEE----EHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             HHHHhhCCCEEEECCCcccchhhhhcccCcccc----HHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccccc
Confidence            55655 478999999999988887543110000    00011122111   12346999999999999999999998642


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEEeCCCCCHhhHHHHHHH
Q psy16563        200 T--LEENELKKNAKFRELLTTIYRNMNN----PELVFVDNSEKSVHESSNDIVE  247 (259)
Q Consensus       200 ~--~~~~~~e~~~~~~~~~~~~y~~~~~----~~~~vID~s~~~~eev~~~I~~  247 (259)
                      .  +..+..+...++++++...|.++..    .++++||++++ ++++.++|.+
T Consensus       157 ~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~-~~~v~~~i~~  209 (214)
T 1gtv_A          157 DPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVD-PGRLAATLAP  209 (214)
T ss_dssp             BBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEB-HHHHHHHHC-
T ss_pred             ccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-HHHHHHHhcC
Confidence            0  0001111124577788888877642    24789999987 9999888754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.68  E-value=8.1e-16  Score=124.84  Aligned_cols=164  Identities=17%  Similarity=0.163  Sum_probs=91.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC-c-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS-S-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      .++|+|+|++||||||+++.|+++++..++..        ++. . +..+++.+...........    ...+.+.+...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~----~~~~~~~~~~~   95 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT----NELVDDRLNNP   95 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHH----HHHHHHHTTSG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHH----HHHHHHHHhcc
Confidence            45799999999999999999999998776532        011 1 1222222221110000000    01112222222


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      ..+..+|+|.++.....                  ...+..++. ....||++|||++|++++.+|+.+|++.+....  
T Consensus        96 ~~~~~vIldg~~~~~~~------------------~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e--  155 (201)
T 2cdn_A           96 DAANGFILDGYPRSVEQ------------------AKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDD--  155 (201)
T ss_dssp             GGTTCEEEESCCCSHHH------------------HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHH--
T ss_pred             cCCCeEEEECCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHH--
Confidence            24567889876443110                  011111111 124589999999999999999999864321111  


Q ss_pred             HHHHHHHHHHHHHHHh------cCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        207 KKNAKFRELLTTIYRN------MNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~------~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                          .+.+++...+..      .....+++||++.+ ++++.++|.+.+.
T Consensus       156 ----~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~-~eev~~~I~~~l~  200 (201)
T 2cdn_A          156 ----VILNRMKVYRDETAPLLEYYRDQLKTVDAVGT-MDEVFARALRALG  200 (201)
T ss_dssp             ----HHHHHHHHHHHHTTTHHHHTTTTEEEEECCSC-HHHHHHHHHHHTT
T ss_pred             ----HHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCC-HHHHHHHHHHHHc
Confidence                122222222211      11335789999876 9999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.3e-15  Score=121.22  Aligned_cols=171  Identities=13%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHH-HHHhccccchHHHHHHHHHH-----HH
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSL-REKFDAHDSLLRRAYYSLGN-----YI  119 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~  119 (259)
                      +++.|....++.  +|+|.|++||||||+++.|++.++..++..     +.+ .+.....  +  ..++....     ..
T Consensus        15 ~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l~~~~i~~-----d~~~~~~~g~~--i--~~~~~~~~~~~~~~~   83 (199)
T 3vaa_A           15 TENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKLNVPFIDL-----DWYIEERFHKT--V--GELFTERGEAGFREL   83 (199)
T ss_dssp             ---------CCC--EEEEECCTTSCHHHHHHHHHHHHTCCEEEH-----HHHHHHHHTSC--H--HHHHHHHHHHHHHHH
T ss_pred             CCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc-----hHHHHHHhCCc--H--HHHHHhcChHHHHHH
Confidence            344444555544  499999999999999999999998877642     121 1111111  1  01111111     11


Q ss_pred             HHHHHHHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh-hccC
Q psy16563        120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS-RRKN  198 (259)
Q Consensus       120 ~~~~i~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~-~R~~  198 (259)
                      ..+.+.....+..+|++-              |++. ...++....+       ..++.+|||++|++++.+|+. .|+.
T Consensus        84 e~~~l~~l~~~~~~vi~~--------------ggg~-~~~~~~~~~l-------~~~~~vi~L~~~~e~l~~Rl~~~~~~  141 (199)
T 3vaa_A           84 ERNMLHEVAEFENVVIST--------------GGGA-PCFYDNMEFM-------NRTGKTVFLNVHPDVLFRRLRIAKQQ  141 (199)
T ss_dssp             HHHHHHHHTTCSSEEEEC--------------CTTG-GGSTTHHHHH-------HHHSEEEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHhhcCCcEEEC--------------CCcE-EccHHHHHHH-------HcCCEEEEEECCHHHHHHHHhcCCCC
Confidence            222334444444444441              2121 0001111122       126789999999999999998 4432


Q ss_pred             Cch-----HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        199 FTL-----EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       199 ~~~-----~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ...     .+...+.....++.....|..    ..++||+++.++++++++|.+.+..+.
T Consensus       142 Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~----ad~~Idt~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          142 RPILQGKEDDELMDFIIQALEKRAPFYTQ----AQYIFNADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             CGGGTTCCHHHHHHHHHHHHHHHHHHHTT----SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred             CCCcCCCChhhHHHHHHHHHHHHHHHHhh----CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            110     000011112222333333432    468999999669999999999997653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.67  E-value=2.9e-15  Score=121.64  Aligned_cols=171  Identities=15%  Similarity=0.204  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CC-Cc-hHHHHHHhccccchHHHHHHHHHHHHHHHH
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PP-SS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (259)
                      ...+++|+|+|++||||||+++.|++.++..++..         +. .. ...+++.+.++.......    ....+.+.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~l~~~   87 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI----TLALLRNA   87 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHH----HHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHH----HHHHHHHH
Confidence            33456799999999999999999999998765532         11 11 122333332211000100    11122334


Q ss_pred             HHHHh-CC-CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC--
Q psy16563        124 IKQDL-QK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--  199 (259)
Q Consensus       124 i~~~l-~~-~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--  199 (259)
                      +.+.+ .| ..+++|.++....                  ....+..+   ...||++|||++|++++.+|+.+|+..  
T Consensus        88 i~~~l~~g~~~~i~dg~~~~~~------------------~~~~~~~~---~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~  146 (203)
T 1ukz_A           88 ISDNVKANKHKFLIDGFPRKMD------------------QAISFERD---IVESKFILFFDCPEDIMLERLLERGKTSG  146 (203)
T ss_dssp             HHHHHHTTCCEEEEETCCCSHH------------------HHHHHHHH---TCCCSEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred             HHhhhccCCCeEEEeCCCCCHH------------------HHHHHHHh---cCCCCEEEEEECCHHHHHHHHHhccccCC
Confidence            44444 44 5778886543210                  00111111   234899999999999999999988521  


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        200 ---TLEENELKKNAKFRELLTTIYRNMNNPE-LVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       200 ---~~~~~~~e~~~~~~~~~~~~y~~~~~~~-~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                         +..+........+.+.....++.....+ +++||++.+ ++++.++|.+.+..
T Consensus       147 ~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~-~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRS-VEDVYKDVQDAIRD  201 (203)
T ss_dssp             CTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSC-HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHHhc
Confidence               1111100011122222222222222233 567999976 99999999998865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.67  E-value=4.6e-15  Score=121.57  Aligned_cols=169  Identities=22%  Similarity=0.264  Sum_probs=92.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHHh----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQDL----  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~l----  128 (259)
                      +.|+|+|++||||||+++.|++.++..++..    ...+++.+..+......  .++...    .......+...+    
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~----d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~   76 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHIST----GDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD   76 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH----HHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeH----HHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc
Confidence            3599999999999999999999998776632    11222222221111000  000000    011112222222    


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc----------
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK----------  197 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~----------  197 (259)
                      .+..+|+|.|+......                  ..+..+. .....||++|||++|++++.+|+.+|.          
T Consensus        77 ~~~~~ildg~p~~~~~~------------------~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~  138 (216)
T 3fb4_A           77 CQKGFLLDGFPRTVAQA------------------DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYH  138 (216)
T ss_dssp             GTTCEEEESCCCSHHHH------------------HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEE
T ss_pred             CCCcEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccc
Confidence            36788999765432111                  1111111 112458999999999999999999981          


Q ss_pred             -----------------------CCchHH--HHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        198 -----------------------NFTLEE--NELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       198 -----------------------~~~~~~--~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                                             +.+.+.  ..+.........+.+.|..  ...+++||++++ ++++.++|.+.|..+
T Consensus       139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~--~~~~~~id~~~~-~~~v~~~i~~~l~~~  215 (216)
T 3fb4_A          139 TIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQ--KGVLKDIDGQQD-IKKVFVDINDLLGGL  215 (216)
T ss_dssp             TTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEECSSC-HHHHHHHHHHHHHTC
T ss_pred             cccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHc--CCcEEEEECCCC-HHHHHHHHHHHHHhc
Confidence                                   111110  0111111111222223322  124789999987 999999999998764

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.66  E-value=3.3e-16  Score=136.53  Aligned_cols=156  Identities=17%  Similarity=0.137  Sum_probs=100.0

Q ss_pred             CeEEEEcCCCCcHHHHH-HHHHHHhhcc----cccCCCC---c--h-HHHHHHhccc-----cchH--------HH--HH
Q psy16563         59 PLIVFEGLDGCGKSHTS-QTVAKKLKAS----LKSTPPS---S--I-MSLREKFDAH-----DSLL--------RR--AY  112 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~-~~l~~~~~~~----~~~~p~~---~--~-~~~~~~~~~~-----~~~~--------~~--~~  112 (259)
                      ++|+|+|+.||||||++ +.|+++++..    ++.+|++   +  . +.+++.+.+.     ..+.        ..  .+
T Consensus        13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e~ql~   92 (341)
T 1osn_A           13 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSL   92 (341)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHHHHHH
Confidence            45999999999999999 9999998754    5677765   2  2 4666666431     1111        00  12


Q ss_pred             HHHHHHHHHHHHHH------------Hh-CCCcEEEcCCccchhhhhhhh-hhccccCCCCCcchhhhhcccccCCCCCE
Q psy16563        113 YSLGNYIAAQDIKQ------------DL-QKQPVVMDRFWHSTSAYGMAN-ELVKNSDLKLPDEDDDIYSWPKDLMKPDL  178 (259)
Q Consensus       113 ~~~~~~~~~~~i~~------------~l-~~~~vi~Dr~~~s~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~pdl  178 (259)
                      |+.....+++++.+            .+ .+..||+||+++++.+|.... ..-++++   .+....+..+......||+
T Consensus        93 fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~---~~~~~~L~~~~~~~~~PDl  169 (341)
T 1osn_A           93 FCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMS---PAALPGLLFTLPAEPPGTN  169 (341)
T ss_dssp             THHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSC---GGGHHHHHTTCCCCCSCCE
T ss_pred             HHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCC---HHHHHHHHHhhhcCCCCCe
Confidence            22222334555443            22 356799999999998665321 1112332   2335667777776778999


Q ss_pred             EEEEecCHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        179 VIYLTVSEAIRLQRLSRRKNF-TLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       179 vI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      +|||++|+++..+|+.+|++. ++.      ..+|++++++.|.++
T Consensus       170 tI~Ld~~pe~~l~RI~~RgR~~Eri------e~~yl~rvr~~Y~~l  209 (341)
T 1osn_A          170 LVVCTVSLPSHLSRVSKRARPGETV------NLPFVMVLRNVYIML  209 (341)
T ss_dssp             EEEEECCHHHHHHHCC------CCC------CHHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHhhCCCcccC------CHHHHHHHHHHHHHH
Confidence            999999999999999888642 221      246888888888876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.65  E-value=3.5e-15  Score=122.36  Aligned_cols=169  Identities=20%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCC---------CCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      +.|+|+|++||||||+++.|++.++..++...         +.. +..+.+.+...........    ...+...+....
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~~   76 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT----IGIVKERLGKDD   76 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHH----HHHHHHHHTSGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhccc
Confidence            35999999999999999999999987765320         001 1222222322111100000    011112222112


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhc-----------
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRR-----------  196 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R-----------  196 (259)
                      .+..+|+|.|+......                  ..+..++ .....||++|||++|++++.+|+.+|           
T Consensus        77 ~~~~~ildg~p~~~~~~------------------~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~  138 (216)
T 3dl0_A           77 CERGFLLDGFPRTVAQA------------------EALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYH  138 (216)
T ss_dssp             GTTCEEEESCCCSHHHH------------------HHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEE
T ss_pred             ccCCEEEeCCCCCHHHH------------------HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccc
Confidence            36788999765542111                  1111111 12345899999999999999999999           


Q ss_pred             ----------------------cCCchHH--HHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        197 ----------------------KNFTLEE--NELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       197 ----------------------~~~~~~~--~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                                            .+.+.+.  .+++........+.+.|.+.  ..+++||++++ ++++.++|.+.|+.+
T Consensus       139 ~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~--~~~~~id~~~~-~~~v~~~i~~~l~~~  215 (216)
T 3dl0_A          139 LVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEK--GYLVNVNGQQD-IQDVYADLKVLLGGL  215 (216)
T ss_dssp             TTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEECSSC-HHHHHHHHHHHHGGG
T ss_pred             cccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHhc
Confidence                                  1111111  01111111122223333322  23789999988 999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.65  E-value=2.3e-15  Score=124.41  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC------C--CCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST------P--PSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~------p--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      ++|+|+|++||||||+++.|+++++..++..      +  +.+  +..+++.+........        ......+.+.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~--------~~~~~~i~~~l   72 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD--------DITIPMVLETL   72 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCH--------HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcH--------HHHHHHHHHHH
Confidence            3599999999999999999999998766532      1  111  1233333332110000        12223333333


Q ss_pred             -C--CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-c---
Q psy16563        129 -Q--KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-T---  200 (259)
Q Consensus       129 -~--~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~---  200 (259)
                       .  +..||+|.|+....                  ....+..++ .....||++|||++|++++.+|+.+|+.. +   
T Consensus        73 ~~~~g~~vIlDg~~~~~~------------------~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g  134 (223)
T 2xb4_A           73 ESKGKDGWLLDGFPRNTV------------------QAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPN  134 (223)
T ss_dssp             HHHCTTCEEEESCCCSHH------------------HHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTT
T ss_pred             hcccCCeEEEeCCcCCHH------------------HHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccC
Confidence             3  78899997654311                  011122221 12246899999999999999999988621 0   


Q ss_pred             --------------------------hHHHHHH-----HHHHHHHHH---HH---HHHhcC---CCCeEEEeCCCCCHhh
Q psy16563        201 --------------------------LEENELK-----KNAKFRELL---TT---IYRNMN---NPELVFVDNSEKSVHE  240 (259)
Q Consensus       201 --------------------------~~~~~~e-----~~~~~~~~~---~~---~y~~~~---~~~~~vID~s~~~~ee  240 (259)
                                                +.++..+     ....|.++.   .+   .|.++.   ...+++||++.+ +++
T Consensus       135 ~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~-~~~  213 (223)
T 2xb4_A          135 HPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGS-IDS  213 (223)
T ss_dssp             SCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSC-HHH
T ss_pred             CccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCC-HHH
Confidence                                      0111111     111244442   55   777653   224799999887 999


Q ss_pred             HHHHHHHHH
Q psy16563        241 SSNDIVELI  249 (259)
Q Consensus       241 v~~~I~~~l  249 (259)
                      ++++|.+.|
T Consensus       214 v~~~i~~~l  222 (223)
T 2xb4_A          214 IKDTLLAQL  222 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.64  E-value=5.9e-15  Score=121.64  Aligned_cols=169  Identities=17%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHH-HH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDI-KQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~  126 (259)
                      +++|+|+|++||||||+++.|+++++..++..        ++.+  +..+++.+..........+.    ....+.+ .+
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~----~~~~~~~~~~   80 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV----NMVKERLRQP   80 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHSH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHH----HHHHHHHhhc
Confidence            34599999999999999999999999776542        0110  12233333221111111110    1111221 22


Q ss_pred             HhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-------
Q psy16563        127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-------  199 (259)
Q Consensus       127 ~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-------  199 (259)
                      ...+..+|+|.|.....                  ....+.   .....||++|||++|++++.+|+..|+..       
T Consensus        81 ~~~~~~~vidg~~~~~~------------------~~~~l~---~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~  139 (222)
T 1zak_A           81 DAQENGWLLDGYPRSYS------------------QAMALE---TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIY  139 (222)
T ss_dssp             HHHHTCEEEESCCCSHH------------------HHHHHH---TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEE
T ss_pred             cccCCcEEEECCCCCHH------------------HHHHHH---HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCcc
Confidence            22234455586543210                  011111   12345899999999999999999877521       


Q ss_pred             -------------chHHHH-HHHHHHHHHHHHHHHH---h---cCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 -------------TLEENE-LKKNAKFRELLTTIYR---N---MNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 -------------~~~~~~-~e~~~~~~~~~~~~y~---~---~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                                   .+...+ .+......+++...|.   .   .+...+++||++.+ +++++++|.+.+...
T Consensus       140 ~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~-~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          140 HLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDAT-VDAVFAKIDELLGSI  211 (222)
T ss_dssp             ESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred             ccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCC-HHHHHHHHHHHHHhh
Confidence                         000000 0000112222222222   2   12234789999766 999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.64  E-value=6.2e-15  Score=116.06  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc----chHH--HHHHHH-HHHHHHHHHHHHh---
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD----SLLR--RAYYSL-GNYIAAQDIKQDL---  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~~~~~~i~~~l---  128 (259)
                      ++|+|+|++||||||+++.| +.+|..++..    .+.+++......    .+..  ..++.. ........+.+.+   
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM----SDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTS   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH----HHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH----hHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence            46999999999999999999 8888876642    123333322211    0100  001110 0112233334434   


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      .+..||+|.+ ...                  .....+..+.   ..|+++|||++|++++.+|+..|++......    
T Consensus        77 ~~~~vi~dg~-~~~------------------~~~~~l~~~~---~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~----  130 (179)
T 3lw7_A           77 NHDLVVFDGV-RSL------------------AEVEEFKRLL---GDSVYIVAVHSPPKIRYKRMIERLRSDDSKE----  130 (179)
T ss_dssp             CCSCEEEECC-CCH------------------HHHHHHHHHH---CSCEEEEEEECCHHHHHHHHHTCC----CCC----
T ss_pred             CCCeEEEeCC-CCH------------------HHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHhccCCCCcch----
Confidence            4678899865 211                  1111222222   2478999999999999999999975321110    


Q ss_pred             HHHHHHHH-------HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        209 NAKFRELL-------TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       209 ~~~~~~~~-------~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ...+.++.       ...|...   ..++||++++ ++++.++|.+++..+
T Consensus       131 ~~~~~~r~~~~~~~~~~~~~~~---ad~vId~~~~-~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          131 ISELIRRDREELKLGIGEVIAM---ADYIITNDSN-YEEFKRRCEEVTDRV  177 (179)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHT---CSEEEECCSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccChHhHHHh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            11111221       1122222   3488999885 999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.64  E-value=7.2e-16  Score=123.90  Aligned_cols=166  Identities=15%  Similarity=0.126  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh----ccccc-hHHHHHHHHHHHHHHHHHHHHh-CCC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----DAHDS-LLRRAYYSLGNYIAAQDIKQDL-QKQ  131 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~i~~~l-~~~  131 (259)
                      .++|+|+|++||||||+++.|++.++..++..     +.+++.+    ...+. +.. .............+...+ .|.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~-----D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~   78 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK-----DAFKEVMFDGLGWSDREWSR-RVGATAIMMLYHTAATILQSGQ   78 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH-----HHHHHHHHHHHCCCSHHHHH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH-----HHHHHHHHHhcCccchHHHH-HhhHHHHHHHHHHHHHHHhCCC
Confidence            34699999999999999999999998766542     3333322    11111 111 111111112233344444 688


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-chHHHHHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TLEENELKKNA  210 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~~~~~~e~~~  210 (259)
                      .||+|++. +.. ..                ...+..+......|+++|||++|++++.+|+.+|+.. ++.....  ..
T Consensus        79 ~vi~d~~~-~~~-~~----------------~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~--~~  138 (193)
T 2rhm_A           79 SLIMESNF-RVD-LD----------------TERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHC--DD  138 (193)
T ss_dssp             CEEEEECC-CHH-HH----------------HHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC---------
T ss_pred             eEEEecCC-CCH-HH----------------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccc--cC
Confidence            89999876 210 00                0011111122345889999999999999999988631 1110000  01


Q ss_pred             HHHH--HHHHHHHh---cCC-CCeEEEeCCCC---CHhhHHHHHHHHH
Q psy16563        211 KFRE--LLTTIYRN---MNN-PELVFVDNSEK---SVHESSNDIVELI  249 (259)
Q Consensus       211 ~~~~--~~~~~y~~---~~~-~~~~vID~s~~---~~eev~~~I~~~l  249 (259)
                      .+..  .+...|..   +.. .++++||+++.   .++++.+.|.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l  186 (193)
T 2rhm_A          139 RSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHL  186 (193)
T ss_dssp             -CHHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred             ccCcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence            1222  22233333   222 45899999986   2344444444444

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.63  E-value=2.2e-15  Score=120.82  Aligned_cols=167  Identities=14%  Similarity=0.132  Sum_probs=93.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc-----ccccCCCCchHHHHHHh-----cccc----chHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA-----SLKSTPPSSIMSLREKF-----DAHD----SLLRRAYYSLGNYIAAQDI  124 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~-----~~~~~p~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~i  124 (259)
                      ++|+|+|++||||||+++.|+++++.     .++  +.  .+.+++.+     ....    .+........ .......+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII--NY--GDFMLATALKLGYAKDRDEMRKLSVEKQKKL-QIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE--EH--HHHHHHHHHTTTSCSSHHHHTTSCHHHHHHH-HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE--EC--ChHHHHHHHhcccccchhhhhcCCHHHHHHH-HHHHHHHH
Confidence            36999999999999999999999983     333  11  12222222     1110    0100100000 11123345


Q ss_pred             HHHh---CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHH-Hhh--ccC
Q psy16563        125 KQDL---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSR--RKN  198 (259)
Q Consensus       125 ~~~l---~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~R-l~~--R~~  198 (259)
                      .+.+   .+..||+|+|  +...++..  ...++    +  ...+..     ..|+++|||++|++++++| +..  |+.
T Consensus        77 ~~~l~~~~~~~vi~d~~--~~~~~~~~--~~~~~----~--~~~~~~-----~~~~~vi~l~~~~~~~~~rr~~~~~R~~  141 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTH--AVIRTPSG--YLPGL----P--SYVITE-----INPSVIFLLEADPKIILSRQKRDTTRNR  141 (194)
T ss_dssp             HHHHHHTCSSEEEEEEC--SEEEETTE--EEESS----C--HHHHHH-----HCCSEEEEEECCHHHHHHHHHHCTTTCC
T ss_pred             HHHhhccCCCEEEECCc--hhhccccc--cccCC----C--HHHHHh-----cCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence            5554   5788999998  22223210  01111    1  111211     1389999999999999866 767  764


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEE-eCCCCCHhhHHHHHHHHH
Q psy16563        199 FTLEENELKKNAKFRELLTTIYRNMN----NPELVFV-DNSEKSVHESSNDIVELI  249 (259)
Q Consensus       199 ~~~~~~~~e~~~~~~~~~~~~y~~~~----~~~~~vI-D~s~~~~eev~~~I~~~l  249 (259)
                      .+....+   ...+.+++...|.+..    ..++++| |++.+ +++++++|.+.+
T Consensus       142 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~-~e~v~~~I~~~l  193 (194)
T 1nks_A          142 NDYSDES---VILETINFARYAATASAVLAGSTVKVIVNVEGD-PSIAANEIIRSM  193 (194)
T ss_dssp             CCCCSHH---HHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSC-HHHHHHHHHHHH
T ss_pred             CCccCHH---HHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHh
Confidence            1111110   2334455555555542    2357889 88776 999999998876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.63  E-value=2e-14  Score=119.42  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH----HHHHHHHHHHHHh---
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL----GNYIAAQDIKQDL---  128 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~i~~~l---  128 (259)
                      .+.|+|+|++||||||+++.|+++++..++..    .+.+++.......+..  +.++..    ........+.+.+   
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~----d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   91 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT----GDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP   91 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH----HHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecH----HHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            45699999999999999999999999776642    1122222111111100  001000    0112222333332   


Q ss_pred             -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhccC--------
Q psy16563        129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRKN--------  198 (259)
Q Consensus       129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~~--------  198 (259)
                       .+..+|+|+|......                  ...+..|+. ....||++|||++|++++.+|+..|..        
T Consensus        92 ~~~~g~ildg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y  153 (233)
T 1ak2_A           92 PCKNGFLLDGFPRTVRQ------------------AEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSY  153 (233)
T ss_dssp             GGTTCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEE
T ss_pred             cccCcEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCcc
Confidence             2456889987643210                  111222221 124589999999999999999988841        


Q ss_pred             ------------------C--chHHHHHH----HHHHHHHHH---HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        199 ------------------F--TLEENELK----KNAKFRELL---TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       199 ------------------~--~~~~~~~e----~~~~~~~~~---~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                                        .  .+.++..+    ....|.+..   .+.|.+  ...+++||++.+ +++++++|.+.|..
T Consensus       154 ~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~--~~~~~~id~~~~-~~~v~~~I~~~l~~  230 (233)
T 1ak2_A          154 HEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSK--RGIHSAIDASQT-PDVVFASILAAFSK  230 (233)
T ss_dssp             BTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEETTSC-HHHHHHHHHHHHHH
T ss_pred             ccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHHHh
Confidence                              0  01111100    011122211   112221  123789999976 99999999999875


Q ss_pred             c
Q psy16563        252 L  252 (259)
Q Consensus       252 ~  252 (259)
                      +
T Consensus       231 ~  231 (233)
T 1ak2_A          231 A  231 (233)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.62  E-value=8.3e-15  Score=118.92  Aligned_cols=162  Identities=16%  Similarity=0.124  Sum_probs=93.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      ++++|+|+|++||||||+++.|++.++..++...................+..     .........+...+ .+..+|+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~l~~~~~~~~~viv   91 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTD-----DDRWPWLAAIGERLASREPVVV   91 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCH-----HHHHHHHHHHHHHHTSSSCCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCc-----hhhHHHHHHHHHHHhcCCCEEE
Confidence            35579999999999999999999999877664321110100111110000100     00111122333333 5677788


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |......                  .....+...   ...|+.+|||++|++++.+|+.+|++.....       +..++
T Consensus        92 d~~~~~~------------------~~~~~l~~~---~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~-------~~~~~  143 (202)
T 3t61_A           92 SCSALKR------------------SYRDKLRES---APGGLAFVFLHGSESVLAERMHHRTGHFMPS-------SLLQT  143 (202)
T ss_dssp             ECCCCSH------------------HHHHHHHHT---STTCCEEEEEECCHHHHHHHHHHHHSSCCCH-------HHHHH
T ss_pred             ECCCCCH------------------HHHHHHHHh---cCCCeEEEEEeCCHHHHHHHHHHhhccCCCH-------HHHHH
Confidence            7443211                  011122111   1346789999999999999999997432111       12233


Q ss_pred             HHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        216 LTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       216 ~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ....+..... ..+++||++.+ +++++++|.+.|...
T Consensus       144 ~~~~~~~~~~~~~~~~Id~~~~-~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          144 QLETLEDPRGEVRTVAVDVAQP-LAEIVREALAGLARL  180 (202)
T ss_dssp             HHHHCCCCTTSTTEEEEESSSC-HHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCCCeEEEeCCCC-HHHHHHHHHHHHHHh
Confidence            3333333322 35899999965 999999999999765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.62  E-value=4.6e-15  Score=122.01  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      +.|+|+|++||||||+++.|+++++..++..        ++.  .+..+++.+.......        .....+.+.+.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~--------~~~~~~~i~~~l   77 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVG--------DEIVLGLVKEKF   77 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCC--------HHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCC--------HHHHHHHHHHHH
Confidence            4599999999999999999999999877642        110  1122333332211000        111222233322


Q ss_pred             ----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        129 ----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       129 ----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                          .+..+|+|.|+.....                  ...+..++ .....||++|||++|++++.+|+..|+
T Consensus        78 ~~~~~~~~~i~dg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           78 DLGVCVNGFVLDGFPRTIPQ------------------AEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             HTTTTTTCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             hccccCCCEEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence                3678899976543110                  11111111 122458999999999999999999885

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.61  E-value=7.1e-15  Score=117.50  Aligned_cols=164  Identities=18%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      ++|+|+|++||||||+++.|+++++..++..        ++.+  +..+++.+.......        .......+...+
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~--------~~~~~~~~~~~l   76 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVP--------DDLILELIREEL   76 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--------HHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCC--------HHHHHHHHHHHh
Confidence            3599999999999999999999998776532        0100  112222222211000        011222334434


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc-cCCCCCEEEEEecCHHHHHHHHhhcc----CCchHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK-DLMKPDLVIYLTVSEAIRLQRLSRRK----NFTLEE  203 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~  203 (259)
                      .. .+|+|+++......                  ..+..++. ....||++|||++|++++.+|+..|+    ..+...
T Consensus        77 ~~-~~i~dg~~~~~~~~------------------~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~  137 (186)
T 3cm0_A           77 AE-RVIFDGFPRTLAQA------------------EALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNE  137 (186)
T ss_dssp             CS-EEEEESCCCSHHHH------------------HHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             cC-CEEEeCCCCCHHHH------------------HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCH
Confidence            32 38899776542110                  01111111 11247899999999999999999884    211111


Q ss_pred             HHHH-HHHHHHHHHHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        204 NELK-KNAKFRELLTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       204 ~~~e-~~~~~~~~~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .... ....+.+.....+..... ..+++||++.+ ++++.++|.+.+.
T Consensus       138 ~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~-~~~v~~~i~~~l~  185 (186)
T 3cm0_A          138 ETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGT-PDEVYARIRAALG  185 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSC-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHHHHhc
Confidence            1111 011222221111111111 23789999876 9999999998774

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.60  E-value=5.7e-15  Score=121.09  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCC--chHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPS--SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  129 (259)
                      .|+|+|++||||||+++.|+++++..++..        ++.  .+..+++.+.......        .......+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~--------~~~~~~~i~~~l~   73 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT--------DELVIALVKERIA   73 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCC--------HHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCC--------HHHHHHHHHHHHh
Confidence            599999999999999999999998766542        000  0111222221110000        1122233333332


Q ss_pred             ----CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        130 ----KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       130 ----~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                          +..+|+|+|......                  ...+   ......||++|||++|++++.+|+..|+
T Consensus        74 ~~~~~~~~i~dg~~~~~~~------------------~~~l---~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           74 QEDCRNGFLLDGFPRTIPQ------------------ADAM---KEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             SGGGGGCEEEESCCCSHHH------------------HHHH---HHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             ccccCCCEEEeCCCCCHHH------------------HHHH---HhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence                356888876432110                  0111   1112358999999999999999998875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.60  E-value=2.2e-14  Score=118.53  Aligned_cols=167  Identities=16%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH--------HHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL--------GNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~i~~~  127 (259)
                      .+.++|.|++||||||+++.|++.++..+++.    ++.+++.+.....+...  .++..        -...+.+.+...
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~----gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~   83 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQIST----GDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEA   83 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECH----HHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSG
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeec----hHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCc
Confidence            45599999999999999999999999887743    22333332222111110  00000        001122222221


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC--C------
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN--F------  199 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~--~------  199 (259)
                      -....+|+|.|+.+..                     +...+......||++|+|+||++++.+|+.+|.-  .      
T Consensus        84 ~~~~g~ILDGfPRt~~---------------------Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh  142 (230)
T 3gmt_A           84 DCANGYLFDGFPRTIA---------------------QADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYH  142 (230)
T ss_dssp             GGTTCEEEESCCCSHH---------------------HHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEE
T ss_pred             ccCCCeEecCCCCcHH---------------------HHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccc
Confidence            1235688898766421                     1111111234689999999999999999999851  0      


Q ss_pred             --------------------chHHHHHH-------HHHHHHHHHHHHHHhcC---------CCCeEEEeCCCCCHhhHHH
Q psy16563        200 --------------------TLEENELK-------KNAKFRELLTTIYRNMN---------NPELVFVDNSEKSVHESSN  243 (259)
Q Consensus       200 --------------------~~~~~~~e-------~~~~~~~~~~~~y~~~~---------~~~~~vID~s~~~~eev~~  243 (259)
                                          .+.++..+       ...+...-+.+.|.+..         ...+..||++++ +++|.+
T Consensus       143 ~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~-~~eV~~  221 (230)
T 3gmt_A          143 VKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGA-VEEIRA  221 (230)
T ss_dssp             TTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------
T ss_pred             ccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCC-HHHHHH
Confidence                                02222111       12222233444555420         134789999998 999999


Q ss_pred             HHHHHHh
Q psy16563        244 DIVELIH  250 (259)
Q Consensus       244 ~I~~~l~  250 (259)
                      +|.++|.
T Consensus       222 ~i~~~l~  228 (230)
T 3gmt_A          222 RVRRAQV  228 (230)
T ss_dssp             -------
T ss_pred             HHHHHHh
Confidence            9998774

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.60  E-value=2.4e-15  Score=119.86  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHh--CCCcEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-DSLLRRAYYSLGNYIAAQDIKQDL--QKQPVV  134 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l--~~~~vi  134 (259)
                      .++|+|+|++||||||+++.|++.++..++..+...+..+++.+... ..+...   ........+.+...+  .+..||
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~---~~~~~~~~~~i~~~l~~~g~~vi   81 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEH---PMWIPLMLDALQYASREAAGPLI   81 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGS---TTHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhh---HHHHHHHHHHHHHHHHhCCCcEE
Confidence            45699999999999999999999999877632211134455555411 111000   000012223333433  377788


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      +|..+.....+                  ..+..++.....+-..|||++|++++.+|+..|+... ..      .+.++
T Consensus        82 ~d~~~~~~~~~------------------~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~-~~------~~~~~  136 (183)
T 2vli_A           82 VPVSISDTARH------------------RRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ-VN------VGTVE  136 (183)
T ss_dssp             EEECCCCHHHH------------------HHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-----CC------HHHHH
T ss_pred             EeeeccCHHHH------------------HHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccc-hh------HHHHH
Confidence            88544321111                  1111111111112246999999999999999986311 11      11223


Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .+...+... .... +||+++.++++++++|.+.+....
T Consensus       137 ~~~~~~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          137 DRLNELRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             HHHHHHTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             HHHHhhccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence            333444433 2234 999996569999999999997754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.60  E-value=1.9e-14  Score=120.52  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=93.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---------CCCc-hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---------PPSS-IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---------p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      +++|+|+|++||||||+++.|+++++..+++.         ++.. +..+.+.+........        ......+...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~--------~~~~~~~~~~  100 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD--------QMVLSLVDEK  100 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCH--------HHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcH--------HHHHHHHHHH
Confidence            45699999999999999999999998776632         1111 1222333322211111        1112222322


Q ss_pred             h----CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC---
Q psy16563        128 L----QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF---  199 (259)
Q Consensus       128 l----~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~---  199 (259)
                      +    .+..+++|.|+......                  ..+..++ .....||.+|+|++|++++.+|+.+|+..   
T Consensus       101 l~~~~~~~~~ildg~p~~~~q~------------------~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~  162 (243)
T 3tlx_A          101 LKTPQCKKGFILDGYPRNVKQA------------------EDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPS  162 (243)
T ss_dssp             TTSGGGSSEEEEESCCCSHHHH------------------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTT
T ss_pred             HhcccccCCEEecCCCCcHHHH------------------HHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCccc
Confidence            2    26778999876542111                  1111111 11245899999999999999999998620   


Q ss_pred             -------------------------chHHHHHHHHHHHHHHHHHHHHhc-------CCC-CeEEEeCCCCCHhhHHHHHH
Q psy16563        200 -------------------------TLEENELKKNAKFRELLTTIYRNM-------NNP-ELVFVDNSEKSVHESSNDIV  246 (259)
Q Consensus       200 -------------------------~~~~~~~e~~~~~~~~~~~~y~~~-------~~~-~~~vID~s~~~~eev~~~I~  246 (259)
                                               .+.++.   .....+++...+.+.       ... .++.||++++ +++++++|.
T Consensus       163 g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~---~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~-~~~v~~~i~  238 (243)
T 3tlx_A          163 GRIYHKIFNPPKVPFRDDVTNEPLIQREDDN---EDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQP-ANDLEKKIS  238 (243)
T ss_dssp             TEEEETTTBCCSSTTBCTTTCCBCBCCGGGS---HHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSC-HHHHHHHHH
T ss_pred             CcccccccCCCcccCccccccccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCC-HHHHHHHHH
Confidence                                     011111   112223333322222       112 3788999988 999999999


Q ss_pred             HHHh
Q psy16563        247 ELIH  250 (259)
Q Consensus       247 ~~l~  250 (259)
                      +.|.
T Consensus       239 ~~l~  242 (243)
T 3tlx_A          239 QHID  242 (243)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.60  E-value=2.2e-14  Score=117.96  Aligned_cols=165  Identities=14%  Similarity=0.205  Sum_probs=91.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccC--------CCCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD-  127 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~--------p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-  127 (259)
                      ++|+|+|++||||||+++.|+++++..++..        ++.+  +..+++.+...........    ...+...+... 
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~----~~~l~~~l~~~~   80 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM----VNMIKDELTNNP   80 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHCG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHH----HHHHHHHHHhcc
Confidence            4599999999999999999999999876642        1111  1223333322111101110    01112222211 


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhccc-ccCCCCCEEEEEecCHHHHHHHHhhccCC-------
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP-KDLMKPDLVIYLTVSEAIRLQRLSRRKNF-------  199 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-------  199 (259)
                      ..+..+|+|+|+.....                  ...+..++ .....||++|||++|++++++|+..|+..       
T Consensus        81 ~~~~~~i~dg~~~~~~~------------------~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y  142 (220)
T 1aky_A           81 ACKNGFILDGFPRTIPQ------------------AEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSY  142 (220)
T ss_dssp             GGGSCEEEESCCCSHHH------------------HHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEE
T ss_pred             ccCCCeEEeCCCCCHHH------------------HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCcc
Confidence            13567889986543110                  01111111 11345899999999999999999887510       


Q ss_pred             ---------------------chHHHHHHHHHHHHHHHHH----------HHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563        200 ---------------------TLEENELKKNAKFRELLTT----------IYRNMNNPELVFVDNSEKSVHESSNDIVEL  248 (259)
Q Consensus       200 ---------------------~~~~~~~e~~~~~~~~~~~----------~y~~~~~~~~~vID~s~~~~eev~~~I~~~  248 (259)
                                           .+.++.   ...+.+++..          .|.+  ...+++||++.+ +++++++|.+.
T Consensus       143 ~~~~~pp~~~~~d~~~~~~l~~r~dd~---~~~~~~rl~~~~~~~~~l~~~y~~--~~~~~~id~~~~-~~~v~~~i~~~  216 (220)
T 1aky_A          143 HKIFNPPKEDMKDDVTGEALVQRSDDN---ADALKKRLAAYHAQTEPIVDFYKK--TGIWAGVDASQP-PATVWADILNK  216 (220)
T ss_dssp             ETTTBCCSSTTBCTTTCCBCBCCTTCS---HHHHHHHHHHHHHHTTHHHHHHHH--HTCEEEEETTSC-HHHHHHHHHHH
T ss_pred             ccccCCCcccccccccccccccCCCCC---HHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEECCCC-HHHHHHHHHHH
Confidence                                 011111   1112223321          2321  123788999876 99999999998


Q ss_pred             Hhc
Q psy16563        249 IHN  251 (259)
Q Consensus       249 l~~  251 (259)
                      |..
T Consensus       217 l~~  219 (220)
T 1aky_A          217 LGK  219 (220)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.59  E-value=1.6e-14  Score=122.12  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh---hcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL---KASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVV  134 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi  134 (259)
                      +++|+|+|++||||||+++.|++.+   |..++..   +.+.+++.+..-.......+..    .....+...+....||
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~---~~D~~~~~l~~~~~~~e~~~~~----~~~~~i~~~l~~~~vI   76 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL---GSDLIRESFPVWKEKYEEFIKK----STYRLIDSALKNYWVI   76 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE---CTHHHHTTSSSCCGGGHHHHHH----HHHHHHHHHHTTSEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE---CchHHHHHHhhhhHHHHHHHHH----HHHHHHHHHhhCCEEE
Confidence            4579999999999999999999984   4443311   1133333221100000111111    1123344455447889


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      +|+.....                  ...+.+..+......|+++|||+||++++.+|+.+|+....        .+.++
T Consensus        77 iD~~~~~~------------------~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~--------~~~l~  130 (260)
T 3a4m_A           77 VDDTNYYN------------------SMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP--------NEVIK  130 (260)
T ss_dssp             ECSCCCSH------------------HHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC--------HHHHH
T ss_pred             EeCCcccH------------------HHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC--------HHHHH
Confidence            99744321                  01223333333345689999999999999999999874221        12334


Q ss_pred             HHHHHHHhcC-----CCCeEEEeCCC-CCHhhHHHHHHHHHhcccc
Q psy16563        215 LLTTIYRNMN-----NPELVFVDNSE-KSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       215 ~~~~~y~~~~-----~~~~~vID~s~-~~~eev~~~I~~~l~~~~~  254 (259)
                      ++...|++..     ..+.++||++. .+++++++.|.+.+...+.
T Consensus       131 ~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~  176 (260)
T 3a4m_A          131 KMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK  176 (260)
T ss_dssp             HHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence            4444454321     23578999998 3699999999999876553

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.59  E-value=1.5e-14  Score=115.77  Aligned_cols=171  Identities=16%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh-----cccccCCCCchHHHHHHhcccc------chH---HHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK-----ASLKSTPPSSIMSLREKFDAHD------SLL---RRAYYSLGNYIAAQDI  124 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~-----~~~~~~p~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~i  124 (259)
                      ++|+|+|++||||||+++.|+++++     ..++..    .+.+++......      .+.   ....... .....+.+
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i   78 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF----GSVMFEVAKEENLVSDRDQMRKMDPETQKRI-QKMAGRKI   78 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH----HHHHHHHHHHTTSCSSGGGGSSCCHHHHHHH-HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh----HHHHHHHHhccCCCCCHHHHhcCCHHHHHHH-HHHHHHHH
Confidence            4599999999999999999999998     444421    123333321110      110   0000000 01112334


Q ss_pred             HHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHH-HHhh--ccCCch
Q psy16563        125 KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQ-RLSR--RKNFTL  201 (259)
Q Consensus       125 ~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~-Rl~~--R~~~~~  201 (259)
                      .+...+..||+|.+........    ...+    ++.  ..+..     ..||++|||++|++++.+ |+..  |+....
T Consensus        79 ~~~~~~~~viid~~~~~~~~~~----~~~~----~~~--~~~~~-----~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~  143 (192)
T 1kht_A           79 AEMAKESPVAVDTHSTVSTPKG----YLPG----LPS--WVLNE-----LNPDLIIVVETTGDEILMRRMSDETRVRDLD  143 (192)
T ss_dssp             HHHHTTSCEEEECCSEEEETTE----EEES----SCH--HHHHH-----HCCSEEEEEECCHHHHHHHHHTSSSCSSSCC
T ss_pred             HhhccCCeEEEccceecccccc----cccc----CcH--HHHhc-----cCCCEEEEEeCCHHHHHHHHhhhcccCCCcC
Confidence            4444566777886542110000    0000    110  11111     137899999999999996 9987  763211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        202 EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       202 ~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      .....+......+.....|.......+++|++...++++++++|.+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          144 TASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            111111111122222222322223345666444333999999998876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.58  E-value=6.5e-14  Score=113.59  Aligned_cols=162  Identities=10%  Similarity=0.067  Sum_probs=89.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLRE-KFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      .+|+|.|++||||||+++.|++.+|..++...... ....+. .....  +.....+. ........+...+ .+..+|+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~~~~~g~~vii  106 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIP--LTDEDRWP-WLRSLAEWMDARADAGVSTII  106 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCC--CCHHHHHH-HHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCC--CCCccccc-HHHHHHHHHHHHHhcCCCEEE
Confidence            45999999999999999999999987655421110 011111 11110  00000000 0011122222222 5667777


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |..+...                  .....+    .....+..+|||+||++++.+|+.+|+.......       ..+.
T Consensus       107 d~~~~~~------------------~~~~~l----~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~-------~l~~  157 (200)
T 4eun_A          107 TCSALKR------------------TYRDVL----REGPPSVDFLHLDGPAEVIKGRMSKREGHFMPAS-------LLQS  157 (200)
T ss_dssp             EECCCCH------------------HHHHHH----TTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGG-------GHHH
T ss_pred             EchhhhH------------------HHHHHH----HHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHH-------HHHH
Confidence            7432211                  001111    1122256799999999999999999974322111       1122


Q ss_pred             HHHHHHhcCC-CCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        216 LTTIYRNMNN-PELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       216 ~~~~y~~~~~-~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ..+.++..+. ...++||++.+ ++++.++|.+.+....
T Consensus       158 ~~~~~~~~~~~~~~~~Id~~~~-~~e~~~~I~~~l~~~~  195 (200)
T 4eun_A          158 QLATLEALEPDESGIVLDLRQP-PEQLIERALTWLDIAP  195 (200)
T ss_dssp             HHHHCCCCCTTSCEEEEETTSC-HHHHHHHHHHHHCCCG
T ss_pred             HHHHhCCCCCCCCeEEEECCCC-HHHHHHHHHHHHHhcc
Confidence            2222333332 35799999885 9999999999997653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.55  E-value=8.6e-14  Score=115.05  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCC--------CCc--hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP--------PSS--IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (259)
                      .++|+|+|++||||||+++.|++.++..++...        +.+  +..+++.+............    ..+.+.+...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~----~~~~~~l~~~   82 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT----RLALHELKNL   82 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHH----HHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHH----HHHHHHHhcc
Confidence            356999999999999999999999987766321        000  11222333221111010000    0111222111


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc-----CC---
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK-----NF---  199 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~-----~~---  199 (259)
                       .+..+|+|+|....  .+.                ..+..    ...||++|||++|++++.+|+..|+     +.   
T Consensus        83 -~~~~~vid~~~~~~--~~~----------------~~l~~----~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~  139 (227)
T 1zd8_A           83 -TQYSWLLDGFPRTL--PQA----------------EALDR----AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYN  139 (227)
T ss_dssp             -TTSCEEEESCCCSH--HHH----------------HHHHT----TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEE
T ss_pred             -cCCCEEEeCCCCCH--HHH----------------HHHHH----hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccc
Confidence             35678899876431  110                11111    1458899999999999999998873     10   


Q ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHhc-------C--CCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        200 --------------------TLEENELKKNAKFRELLTTIYRNM-------N--NPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       200 --------------------~~~~~~~e~~~~~~~~~~~~y~~~-------~--~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                                          .+.++.   ...+.+++ ..|.+.       +  ...+++||++ + +++++++|.+.+.
T Consensus       140 ~~~~pp~~~~~~~~~~~~l~~r~~~~---~e~~~~r~-~~y~~~~~~l~~~y~~~~~~~~id~~-~-~~~v~~~i~~~l~  213 (227)
T 1zd8_A          140 IEFNPPKTVGIDDLTGEPLIQREDDK---PETVIKRL-KAYEDQTKPVLEYYQKKGVLETFSGT-E-TNKIWPYVYAFLQ  213 (227)
T ss_dssp             TTTBCCSSTTBCTTTCCBCBCCGGGS---HHHHHHHH-HHHHHHHHHHHHHHHHHTCEEEEECS-S-HHHHHHHHHHHHT
T ss_pred             cccCCCCcccccccccccccCCCCCC---HHHHHHHH-HHHHHHHHHHHHHHHccCCEEEEeCC-C-HHHHHHHHHHHHH
Confidence                                011111   11122222 223221       1  1237899998 5 9999999999997


Q ss_pred             ccc
Q psy16563        251 NLP  253 (259)
Q Consensus       251 ~~~  253 (259)
                      ...
T Consensus       214 ~~~  216 (227)
T 1zd8_A          214 TKV  216 (227)
T ss_dssp             TTS
T ss_pred             hhc
Confidence            653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.54  E-value=1.1e-13  Score=109.02  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHH-----HHHHHHHHHHHHhC-CC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL-----GNYIAAQDIKQDLQ-KQ  131 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~-~~  131 (259)
                      ..+|+|+|++||||||+++.|+++++..++...    ..+++.....  + . .++..     .+....+.+..... +.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D----~~~~~~~g~~--~-~-~~~~~~g~~~~~~~~~~~l~~~~~~~~   78 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD----MIISERVGLS--V-R-EIFEELGEDNFRMFEKNLIDELKTLKT   78 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH----HHHHHHHTSC--H-H-HHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh----HHHHHHhCCC--H-H-HHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            346999999999999999999999998776431    1111111110  0 0 01000     00111122333333 33


Q ss_pred             c-EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH-HHHHH
Q psy16563        132 P-VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN-ELKKN  209 (259)
Q Consensus       132 ~-vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~-~~e~~  209 (259)
                      . |+..               ++++...     ..       +..+|.+|||++|++++.+|+.+|....+... +.+..
T Consensus        79 ~~Vi~~---------------g~g~~~~-----~~-------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~  131 (168)
T 1zuh_A           79 PHVIST---------------GGGIVMH-----EN-------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQA  131 (168)
T ss_dssp             CCEEEC---------------CGGGGGC-----GG-------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHH
T ss_pred             CEEEEC---------------CCCEech-----hH-------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHH
Confidence            3 4431               1122100     11       12368999999999999999988721011000 01112


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       210 ~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ..........|...   ..++||+++ ++++++++|.+.+
T Consensus       132 ~~~~~~r~~~~~~~---a~~~Id~~~-~~e~~~~~I~~~l  167 (168)
T 1zuh_A          132 KELFEKRQALYEKN---ASFIIDARG-GLNNSLKQVLQFI  167 (168)
T ss_dssp             HHHHHHHHHHHHHT---CSEEEEGGG-CHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH---CCEEEECCC-CHHHHHHHHHHHh
Confidence            22223333445433   348899999 5999999988755

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=99.54  E-value=6.9e-15  Score=125.67  Aligned_cols=162  Identities=13%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc-----cCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK-----STPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK  130 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~  130 (259)
                      ..+|+|+|.+||||||+++.|.+++...++     .+|+  ...++     .+              ...++.+.+  +|
T Consensus        86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt--~eE~~-----~~--------------yl~R~~~~LP~~G  144 (304)
T 3czq_A           86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT--ETERG-----QW--------------YFQRYVATFPTAG  144 (304)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC--HHHHT-----SC--------------TTHHHHTTCCCTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC--hHHHh-----ch--------------HHHHHHHhcccCC
Confidence            456999999999999999999999987643     2332  22221     11              112334444  69


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCc----chhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccC-----
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPD----EDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-----  198 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~----~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-----  198 (259)
                      .+||+||||++.+++...   .+..+   .+    .+.++..   ++.....|++++||++|+++..+|+..|..     
T Consensus       145 ~IvIfDRswYs~v~~~rv---~g~~~---~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~  218 (304)
T 3czq_A          145 EFVLFDRSWYNRAGVEPV---MGFCT---PDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKI  218 (304)
T ss_dssp             CEEEEEECGGGGTTHHHH---HTSSC---HHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTG
T ss_pred             eEEEEECCcchHHHHHHH---hcCCC---HHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccc
Confidence            999999999999888643   22221   11    1222222   233345799999999999999999987742     


Q ss_pred             --CchHHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCC--HhhHHHHHHHHH
Q psy16563        199 --FTLEENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKS--VHESSNDIVELI  249 (259)
Q Consensus       199 --~~~~~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~--~eev~~~I~~~l  249 (259)
                        .++.+..   ..+++.+...+|.++    .  ..+|++||++.+.  .-.+.+.|.+.|
T Consensus       219 Wk~s~~D~~---~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l  276 (304)
T 3czq_A          219 WKLSPMDIA---ALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKL  276 (304)
T ss_dssp             GGCCHHHHH---GGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHH
Confidence              1222211   233445555555544    1  3479999999851  233444444444

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.53  E-value=5.2e-13  Score=108.92  Aligned_cols=158  Identities=18%  Similarity=0.161  Sum_probs=94.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc---------CCCC-chHHHHHHhccc-----cch----HHHHHHHH--HH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS---------TPPS-SIMSLREKFDAH-----DSL----LRRAYYSL--GN  117 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---------~p~~-~~~~~~~~~~~~-----~~~----~~~~~~~~--~~  117 (259)
                      .-|+|+|.+||||||+++.|++ +|..++.         .|+. ....+.+.|+.+     +.+    +....|..  .+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            4599999999999999999998 8887653         3443 346666666532     222    22223321  12


Q ss_pred             HHHHHHHHHHh-----------CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchh--hhhcccccCCCCCEEEEEec
Q psy16563        118 YIAAQDIKQDL-----------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD--DIYSWPKDLMKPDLVIYLTV  184 (259)
Q Consensus       118 ~~~~~~i~~~l-----------~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~--~l~~~~~~~~~pdlvI~L~a  184 (259)
                      ..+...+.|..           .+..|++|-                      |-.++  .+.      ...|.+|+++|
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~----------------------pLL~E~~~~~------~~~D~vi~V~a  140 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVV----------------------PLLVESRNWK------ARCDRVLVVDC  140 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC----------------------TTCTTCHHHH------HHCSEEEEEEC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE----------------------ecccccCCcc------ccCCeEEEEEC
Confidence            33344444321           133556652                      11111  111      11588999999


Q ss_pred             CHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCC-CCCHhhHHHHHHHHHhcc
Q psy16563        185 SEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNS-EKSVHESSNDIVELIHNL  252 (259)
Q Consensus       185 ~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s-~~~~eev~~~I~~~l~~~  252 (259)
                      |++++.+|+.+|++.+.++..   .....+...+.+.+.   ..++|||+ ++ ++++.++|.+++..+
T Consensus       141 p~e~r~~Rl~~Rdg~s~eea~---~ri~~Q~~~eek~~~---AD~VIdN~~gs-le~l~~qV~~l~~~~  202 (210)
T 4i1u_A          141 PVDTQIARVMQRNGFTREQVE---AIIARQATREARLAA---ADDVIVNDAAT-PDALAVQVDALHQRY  202 (210)
T ss_dssp             CHHHHHHHHHHHHCCCHHHHH---HHHHHSCCHHHHHHT---CSEEEECSSCC-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCHHHHH---HHHHHcCChHHHHHh---CCEEEECCCCC-HHHHHHHHHHHHHHH
Confidence            999999999999766544321   111111111222222   24899999 76 999999999888765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.52  E-value=2.3e-13  Score=108.57  Aligned_cols=159  Identities=18%  Similarity=0.197  Sum_probs=84.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH-HhccccchHHHHHHHHHH-----HHHHHHHHHHh-CCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-KFDAHDSLLRRAYYSLGN-----YIAAQDIKQDL-QKQ  131 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~l-~~~  131 (259)
                      +.|+|.|++||||||+++.|++.++..++..     +.+.+ .....  +.  .++....     ......+.... ...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~-----d~~~~~~~g~~--~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~   76 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS-----DKEIEKRTGAD--IA--WIFEMEGEAGFRRREREMIEALCKLDN   76 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH-----HHHHHHHHTSC--HH--HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC-----hHHHHHHcCCC--hh--hHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence            4599999999999999999999999877643     22222 22111  10  1111111     11112233333 233


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH--hhccC-Cch-HHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL--SRRKN-FTL-EENELK  207 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl--~~R~~-~~~-~~~~~e  207 (259)
                      .|+..               |++. ..-+.....+..       .+++|||++|++++.+|+  ..|.. ... .....+
T Consensus        77 ~vi~~---------------gg~~-~~~~~~~~~l~~-------~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~  133 (185)
T 3trf_A           77 IILAT---------------GGGV-VLDEKNRQQISE-------TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKE  133 (185)
T ss_dssp             CEEEC---------------CTTG-GGSHHHHHHHHH-------HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHH
T ss_pred             cEEec---------------CCce-ecCHHHHHHHHh-------CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHH
Confidence            44432               1111 000011111111       236999999999999999  44321 110 111011


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ............|.+.+   .++||+++.++++++++|.+.+...
T Consensus       134 ~l~~~~~~r~~~y~~~a---d~~Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          134 KLQQLNEIRKPLYQAMA---DLVYPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             HHHHHHHHHHHHHHHHC---SEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHhhcC---CEEEECCCCCHHHHHHHHHHHHHHH
Confidence            12222333344454433   4999999966999999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.51  E-value=3e-13  Score=106.61  Aligned_cols=158  Identities=13%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhccccchHHHHHHHHHHH----HHHHHHHHHhCCCcE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHDSLLRRAYYSLGNY----IAAQDIKQDLQKQPV  133 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~~~~v  133 (259)
                      ++|+|+|++||||||+++.|++.++..++..     +.+. +..+..  . . .++.....    .....+...+.+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~-----d~~~~~~~g~~--~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   73 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDT-----DIFMQHTSGMT--V-A-DVVAAEGWPGFRRRESEALQAVATPNR   73 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH-----HHHHHHHHCSC--H-H-HHHHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc-----cHHHHHHhCCC--H-H-HHHHHcCHHHHHHHHHHHHHHhhcCCe
Confidence            3599999999999999999999999876642     1221 111111  1 0 01110000    111111122223333


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHh--hc-cC-CchH-HHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLS--RR-KN-FTLE-ENELKK  208 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~--~R-~~-~~~~-~~~~e~  208 (259)
                      |++.              |++. ...+.....+.       .++++|||++|++++.+|+.  .| +. .... +...+.
T Consensus        74 vi~~--------------g~~~-~~~~~~~~~l~-------~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~  131 (173)
T 1e6c_A           74 VVAT--------------GGGM-VLLEQNRQFMR-------AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEE  131 (173)
T ss_dssp             EEEC--------------CTTG-GGSHHHHHHHH-------HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHH
T ss_pred             EEEC--------------CCcE-EeCHHHHHHHH-------cCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHH
Confidence            3331              1110 00011111111       15789999999999999999  77 32 1111 111111


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ...........|..    ..++||+++.+++++.++|.+.+..
T Consensus       132 ~~~~~~~~~~~~~~----~~~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          132 MEAVLREREALYQD----VAHYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             HHHHHHHHHHHHHH----HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh----CcEEEECCCCCHHHHHHHHHHHhcc
Confidence            11112222222322    3488999965599999999988753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.51  E-value=3.9e-14  Score=113.45  Aligned_cols=170  Identities=14%  Similarity=0.074  Sum_probs=87.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR  137 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr  137 (259)
                      .+|+|+|++||||||+++.|++.++.......-...+.++..+..+..+........ ...........+ .|..|++|+
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~g~~vi~d~   92 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH-LKRIAWIARLLARNGVIVICSF   92 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHH-HHHHHHHHHHHHTTTCEEEEEC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHH-HHHHHHHHHHHHhCCCEEEEeC
Confidence            459999999999999999999998753211100112334332222111111000000 000011111122 577888897


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLT  217 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~  217 (259)
                      +..    +...              .+.+..+......|+++|||++|++++.+|+..+. ..+...  + ....+....
T Consensus        93 ~~~----~~~~--------------r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~-~~~~~~--~-~~~~~~~~~  150 (186)
T 2yvu_A           93 VSP----YKQA--------------RNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGL-YKKALK--G-ELENFTGIT  150 (186)
T ss_dssp             CCC----CHHH--------------HHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHH-HHHHHT--T-CCSSCHHHH
T ss_pred             ccc----cHHH--------------HHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhh-hhHHhh--c-chhhhhhhh
Confidence            532    1110              11111112222358999999999999999975321 000000  0 011112222


Q ss_pred             HHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        218 TIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       218 ~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..|.+. ..++++||+++.++++++++|.+.+...
T Consensus       151 ~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~  184 (186)
T 2yvu_A          151 DPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAV  184 (186)
T ss_dssp             SCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             hcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence            333322 2246999999656999999999988653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.50  E-value=4.1e-13  Score=105.42  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v  133 (259)
                      +.|+|+|++||||||+++.|+++++..++......    +..+++.+.....    ..|.   ......+..+. .+..|
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~----~~~~---~~~~~~l~~l~~~~~~V   73 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGE----AYFR---KLEFEVLKDLSEKENVV   73 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCH----HHHH---HHHHHHHHHHTTSSSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhCh----HHHH---HHHHHHHHHHhccCCeE
Confidence            45999999999999999999999997766421000    0011111111100    0010   01111222222 34455


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR  213 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~  213 (259)
                      |.+..    ...         .   .+.....+       ..+|++|||++|++++.+|+..|+.........+.....+
T Consensus        74 i~~g~----~~~---------~---~~~~~~~l-------~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~  130 (168)
T 2pt5_A           74 ISTGG----GLG---------A---NEEALNFM-------KSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLF  130 (168)
T ss_dssp             EECCH----HHH---------T---CHHHHHHH-------HTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHH
T ss_pred             EECCC----CEe---------C---CHHHHHHH-------HcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHH
Confidence            55411    000         0   00111111       1268999999999999999988742111110011111222


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ......|..    ..++||++.+ ++++.++|.+.+...+
T Consensus       131 ~~~~~~~~~----~~~~i~~~~~-~~~~~~~i~~~l~~~~  165 (168)
T 2pt5_A          131 EERRKIYSK----ADIKVKGEKP-PEEVVKEILLSLEGNA  165 (168)
T ss_dssp             HHHHHHHTT----SSEEEECSSC-HHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHh----CCEEECCCCC-HHHHHHHHHHHHHhcc
Confidence            222333322    2345544444 9999999999987653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.50  E-value=6.2e-14  Score=111.12  Aligned_cols=160  Identities=12%  Similarity=0.021  Sum_probs=77.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH-HhhcccccCCCCchHHHHHHhccc-c----chHHHHHHHHHHHHHHHHHHHHh----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK-KLKASLKSTPPSSIMSLREKFDAH-D----SLLRRAYYSLGNYIAAQDIKQDL----  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~-~~~~~~~~~p~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~l----  128 (259)
                      .+|+|.|++||||||+++.|++ .++..++..     +.+++.+... .    .+..... ........+.+...+    
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-----d~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~   76 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR-----DDYRQSIMAHEERDEYKYTKKKE-GIVTGMQFDTAKSILYGGD   76 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-----HHHHHHHTTSCCGGGCCCCHHHH-HHHHHHHHHHHHHHHTSCS
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-----HHHHHHhhCCCccchhhhchhhh-hHHHHHHHHHHHHHHhhcc
Confidence            3699999999999999999999 566655532     4455443221 1    1211000 000112233445544    


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      .|..||+|.+..+....                  ..+..+......+..+|||++|++++.+|+..|+.....      
T Consensus        77 ~g~~vi~d~~~~~~~~~------------------~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~------  132 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERR------------------LAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVP------  132 (181)
T ss_dssp             SCCEEEECSCCCSHHHH------------------HHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCC------
T ss_pred             CCCeEEEeCCCCCHHHH------------------HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCC------
Confidence            47889999876543111                  111111111123557999999999999999999742211      


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                       .+.+++....|.+....+.++||++.+  +++..+|...+..
T Consensus       133 -~~~i~~~~~~~~~~~~~~~~~id~~~~--~~v~~~i~~~l~~  172 (181)
T 1ly1_A          133 -IDVLRSMYKSMREYLGLPVYNGTPGKP--KAVIFDVDGTLAK  172 (181)
T ss_dssp             -HHHHHHHHHHHHHHHTCCCC----------------------
T ss_pred             -HHHHHHHHHHhhccCCCCccccCCCCC--ceeeehhhhhhhc
Confidence             123344444455443223455887753  7777777776654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.50  E-value=6.2e-14  Score=117.79  Aligned_cols=160  Identities=15%  Similarity=0.118  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHh-C
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDL-Q  129 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l-~  129 (259)
                      +..  |+|.|++||||||+++.|++.++..++..     +.+.+.......+  ..++...     +....+.+.... .
T Consensus        48 g~~--i~l~G~~GsGKSTl~~~La~~lg~~~~d~-----d~~~~~~~~g~~i--~~i~~~~ge~~fr~~e~~~l~~l~~~  118 (250)
T 3nwj_A           48 GRS--MYLVGMMGSGKTTVGKIMARSLGYTFFDC-----DTLIEQAMKGTSV--AEIFEHFGESVFREKETEALKKLSLM  118 (250)
T ss_dssp             TCC--EEEECSTTSCHHHHHHHHHHHHTCEEEEH-----HHHHHHHSTTSCH--HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCE--EEEECCCCCCHHHHHHHHHHhcCCcEEeC-----cHHHHHHhcCccH--HHHHHHhCcHHHHHHHHHHHHHHHhh
Confidence            555  99999999999999999999999877643     1222111111111  0111110     111112233332 2


Q ss_pred             -CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH-HH---
Q psy16563        130 -KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE-EN---  204 (259)
Q Consensus       130 -~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~---  204 (259)
                       ...||..               |+|.. ..++....+    .    .+++|||++|++++.+|+.+|+...+. ..   
T Consensus       119 ~~~~Via~---------------GgG~v-~~~~~~~~l----~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~  174 (250)
T 3nwj_A          119 YHQVVVST---------------GGGAV-IRPINWKYM----H----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDE  174 (250)
T ss_dssp             CSSEEEEC---------------CGGGG-GSHHHHHHH----T----TSEEEEEECCHHHHHHHHHC-------------
T ss_pred             cCCcEEec---------------CCCee-cCHHHHHHH----h----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCC
Confidence             3455544               22320 001111111    1    378999999999999999864311110 00   


Q ss_pred             -------HHHHHHHHHHHHHHHHHhcCCCCeEEE------------eCCCCCHhhHHHHHHHHHhcc
Q psy16563        205 -------ELKKNAKFRELLTTIYRNMNNPELVFV------------DNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       205 -------~~e~~~~~~~~~~~~y~~~~~~~~~vI------------D~s~~~~eev~~~I~~~l~~~  252 (259)
                             ..+.....++.....|..    ..++|            |+++.++++++++|.+.+...
T Consensus       175 ~~d~~~~~~~~l~~l~~eR~~lY~~----ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          175 SGDTYTAALNRLSTIWDARGEAYTK----ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHTT----SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhh----CCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence                   011122233333344432    33555            899888999999999999765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.49  E-value=4.3e-13  Score=107.02  Aligned_cols=159  Identities=19%  Similarity=0.230  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhcccc-chHH---HHHHHHHHHHHHHHHHHHh-CCCc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHD-SLLR---RAYYSLGNYIAAQDIKQDL-QKQP  132 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~~~i~~~l-~~~~  132 (259)
                      ++|+|+|++||||||+++.|++.+|..++..     +.+. +.++... .+..   ...|.   ....+.+...+ ....
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~-----D~~~~~~~g~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~   74 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT-----DVAIEQRTGRSIADIFATDGEQEFR---RIEEDVVRAALADHDG   74 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH-----HHHHHHHHSSCHHHHHHHHCHHHHH---HHHHHHHHHHHHHCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC-----chHHHHHcCCCHHHHHHHhChHHHH---HHHHHHHHHHHhcCCe
Confidence            4599999999999999999999999877642     2222 2222110 0000   00110   11112223222 2334


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch--HHHHHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL--EENELKKNA  210 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~--~~~~~e~~~  210 (259)
                      |+....               ++... +.....+    .    .+.+|||+||++++.+|+..|+....  .....+...
T Consensus        75 vi~~g~---------------~~v~~-~~~~~~l----~----~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~  130 (184)
T 2iyv_A           75 VLSLGG---------------GAVTS-PGVRAAL----A----GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR  130 (184)
T ss_dssp             EEECCT---------------TGGGS-HHHHHHH----T----TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred             EEecCC---------------cEEcC-HHHHHHH----c----CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence            443311               00000 0011111    1    45799999999999999998853110  011011111


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .........|...   ..++||+++.++++++++|.+.+...
T Consensus       131 ~~~~~r~~~~~~~---~~~~Idt~~~s~ee~~~~I~~~l~~~  169 (184)
T 2iyv_A          131 ALMAKRAPLYRRV---ATMRVDTNRRNPGAVVRHILSRLQVP  169 (184)
T ss_dssp             HHHHHHHHHHHHH---CSEEEECSSSCHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHhcc---CCEEEECCCCCHHHHHHHHHHHHhhc
Confidence            2222223344333   24899999656999999999888654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.48  E-value=1.2e-12  Score=107.24  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=45.5

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH--HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL--TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~--~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .+|++|||++|++++.+|+..|++.+..+.     .......  ...|...+   .++||++++ ++++.++|.+.+..+
T Consensus       125 ~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~-----~~~~~~~~~~~~~~~~a---d~vId~~~~-~~~~~~~I~~~l~~~  195 (218)
T 1vht_A          125 KANRVLVVDVSPETQLKRTMQRDDVTREHV-----EQILAAQATREARLAVA---DDVIDNNGA-PDAIASDVARLHAHY  195 (218)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHHTCCHHHH-----HHHHHHSCCHHHHHHHC---SEEEECSSC-TTSHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHHHcCCCCHHHH-----HHHHHhcCChHHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHH
Confidence            378999999999999999999865432211     1111110  11122222   388999984 999999999888654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.47  E-value=1.3e-12  Score=103.33  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLRE-KFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      .+|+|.|++||||||+++.|++.+|..++...... ...+++ .+...  +........ .......+...+ .+..+|+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~vi   85 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP--LNDDDRKPW-LQALNDAAFAMQRTNKVSLI   85 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCC--CCHHHHHHH-HHHHHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcC--CCccccccH-HHHHHHHHHHHHhcCCcEEE
Confidence            35999999999999999999999887665431110 111221 11111  100000000 011122333333 3666777


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      |.....                  +.....+..    . .++ .+|||+||++++.+|+..|++......       ..+
T Consensus        86 ~~~~~~------------------~~~~~~l~~----~-~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~-------~~~  135 (175)
T 1knq_A           86 VCSALK------------------KHYRDLLRE----G-NPNLSFIYLKGDFDVIESRLKARKGHFFKTQ-------MLV  135 (175)
T ss_dssp             ECCCCS------------------HHHHHHHHT----T-CTTEEEEEEECCHHHHHHHHHTSTTCCCCHH-------HHH
T ss_pred             EeCchH------------------HHHHHHHHh----c-CCCEEEEEEECCHHHHHHHHHhccCCCCchH-------HHH
Confidence            732110                  000111111    1 135 699999999999999999974321111       111


Q ss_pred             HHHHHHHhc-C-CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        215 LLTTIYRNM-N-NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       215 ~~~~~y~~~-~-~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .....++.. + ....++||++.+ ++++.++|.+.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~Id~~~~-~~~~~~~i~~~l~~  173 (175)
T 1knq_A          136 TQFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK  173 (175)
T ss_dssp             HHHHHCCCCCTTCTTEEEEECSSC-HHHHHHHHHHHHHC
T ss_pred             HHHHhhhCcccCCCCeEEEeCCCC-HHHHHHHHHHHHhc
Confidence            111223332 2 235799999965 99999999988753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.47  E-value=9.2e-13  Score=104.34  Aligned_cols=159  Identities=18%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHH-HHhcccc-chHHHHHHHHHHHHHHHHHHHHhCCCcEEEcC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLR-EKFDAHD-SLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR  137 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr  137 (259)
                      .|+|.|++||||||+++.|++.++..++..     +.+. ....... .+....-....+......+..+.....++++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~-----d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~   80 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS-----DFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIAT   80 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH-----HHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc-----cHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEEC
Confidence            599999999999999999999999877642     2222 1111110 00000000000011112233333333333331


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc--CCchHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK--NFTLEENELKKNAKFREL  215 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~--~~~~~~~~~e~~~~~~~~  215 (259)
                                    |++...   . .. +       ...+.+|||++|++++.+|+.+|.  ....... .+......+.
T Consensus        81 --------------g~~~~~---~-~~-l-------~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~-~~~i~~~~~~  133 (175)
T 1via_A           81 --------------GGGFVN---V-SN-L-------EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD-EIKAKKLYNE  133 (175)
T ss_dssp             --------------CTTGGG---S-TT-G-------GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC-HHHHHHHHHH
T ss_pred             --------------CCCEeh---h-hH-H-------hcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc-HHHHHHHHHH
Confidence                          111100   0 00 1       114679999999999999998773  1111100 1112222233


Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ....|.+.   ..++||+++.+++++++.|.+.+..-.
T Consensus       134 r~~~y~~~---~~~~Idt~~~~~eev~~~I~~~l~~~~  168 (175)
T 1via_A          134 RLSKYEQK---ANFILNIENKNIDELLSEIKKVIKEGG  168 (175)
T ss_dssp             HHHHHHHH---CSEEEECTTCCHHHHHHHHHHHHC---
T ss_pred             HHHHHHhc---CCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            33444332   359999997669999999999987543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.47  E-value=1.1e-12  Score=106.71  Aligned_cols=75  Identities=8%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-----CC--CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-----NP--ELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-----~~--~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      .++|||++|++++.+|+.+|.+.+..+.. +......+.....|....     .+  ..++||++..+++++++.|.+.+
T Consensus       118 ~~~V~L~A~~e~r~~R~~~~~~~~~~~~~-~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i  196 (201)
T 3fdi_A          118 MISAFILGDKDTKTKRVMEREGVDEKTAL-NMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYI  196 (201)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHH
Confidence            47999999999999999887544322211 111112223333444431     11  25999999988999999999998


Q ss_pred             hcc
Q psy16563        250 HNL  252 (259)
Q Consensus       250 ~~~  252 (259)
                      ...
T Consensus       197 ~~~  199 (201)
T 3fdi_A          197 DSR  199 (201)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.44  E-value=4.8e-13  Score=109.36  Aligned_cols=164  Identities=17%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh------cccccCCCCchHHHHHHhccccchHHHHHHHHHHH----HHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK------ASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY----IAAQDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l  128 (259)
                      ++|+|+|++||||||+++.|++.++      ..++.     .+.++..+.....+.     ...+.    .....+.+.+
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-----~d~~r~~l~~~~~~~-----~~~r~~~~~~~~~~~~~~l   95 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-----GDNIRFGLNKDLGFS-----EADRNENIRRIAEVAKLFA   95 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-----HHHHTTTTTTTCCSS-----HHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-----ChHHhhhhccccCCC-----HHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999987      22221     222322221111110     01111    1122233444


Q ss_pred             -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccc---cCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK---DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                       .|..||+| |. +  .|...+           +....+..+..   ....|+++|||++|++++.+|+ .|+-   ...
T Consensus        96 ~~g~~VI~d-~~-~--~~~~~~-----------~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~~---~~~  156 (211)
T 1m7g_A           96 DSNSIAITS-FI-S--PYRKDR-----------DTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKGL---YKK  156 (211)
T ss_dssp             HTTCEEEEE-CC-C--CCHHHH-----------HHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTCH---HHH
T ss_pred             HCCCEEEEe-cC-C--ccHHHH-----------HHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHHH---HHH
Confidence             57889999 44 2  221100           01112222211   2346899999999999999996 2210   000


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        205 ELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+......+.+...|+.. ..+.++||+++.++++++++|.+.+...
T Consensus       157 ~r~~~~~~~~~~~~~y~~~-~~~~~~IDt~~~s~eev~~~I~~~l~~~  203 (211)
T 1m7g_A          157 AREGVIKEFTGISAPYEAP-ANPEVHVKNYELPVQDAVKQIIDYLDTK  203 (211)
T ss_dssp             HHHTSSSSCBTTTBCCCCC-SSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred             HHhcchhhhhhhhhhccCC-CCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence            0000000000111112111 1235899999955999999999999764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.40  E-value=8.5e-12  Score=99.13  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=26.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|+|++||||||+++.|++.++..++.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~   41 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGLKYIN   41 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence            349999999999999999999999877663

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.39  E-value=6.5e-12  Score=100.42  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=27.5

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHH-hhccccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKK-LKASLKS   88 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~-~~~~~~~   88 (259)
                      +.++|+|+|++||||||+++.|++. +|..++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id   41 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE   41 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence            3456999999999999999999999 7877664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.39  E-value=1.3e-11  Score=103.76  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=44.9

Q ss_pred             CCEEEEEecCHHHHHHHHhh-----ccCCchHHHHHHHHHHHHHHHH-H---HHHhcCC-CCeEEEeCCCCCHhhHHHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRLSR-----RKNFTLEENELKKNAKFRELLT-T---IYRNMNN-PELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~-----R~~~~~~~~~~e~~~~~~~~~~-~---~y~~~~~-~~~~vID~s~~~~eev~~~I  245 (259)
                      .+++|||+||++++.+|+.+     +...+.++.    .....++.. +   ....+.. .+.++||+++.+++++++.|
T Consensus       163 ~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~----~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I  238 (252)
T 4e22_A          163 APVKIFLDASSQERAHRRMLQLQERGFNVNFERL----LAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQA  238 (252)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHH----HHHHC------------CCCCCTTEEEEECSSSCHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHH
Confidence            57899999999999999865     323222211    011111111 0   1111111 22589999997899999999


Q ss_pred             HHHHhccc
Q psy16563        246 VELIHNLP  253 (259)
Q Consensus       246 ~~~l~~~~  253 (259)
                      .+.+....
T Consensus       239 ~~~i~~~~  246 (252)
T 4e22_A          239 LAYAQRIL  246 (252)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99997653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.38  E-value=1.9e-11  Score=104.44  Aligned_cols=69  Identities=10%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH-HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL-LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~-~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +|.+|||+||++++.+|+.+|++.+.++.. .   .+... ....+...   ..++||++++ ++++.++|.+++..+
T Consensus       200 ~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~-~---ri~~q~~~~~~~~~---AD~vIdn~~s-~eel~~~I~~~l~~l  269 (281)
T 2f6r_A          200 VHEVWTVVIPETEAVRRIVERDGLSEAAAQ-S---RLQSQMSGQQLVEQ---SNVVLSTLWE-SHVTQSQVEKAWNLL  269 (281)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHCCCHHHHH-H---HHHTSCCHHHHHHT---CSEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHcCCCCHHHHH-H---HHHHcCChHhhHhh---CCEEEECCCC-HHHHHHHHHHHHHHH
Confidence            688999999999999999998644322210 0   00000 01111111   2478999985 999999999988764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.38  E-value=1.3e-11  Score=100.23  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHh----hHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH----ESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~e----ev~~~I~~~l~~  251 (259)
                      .|.+|||++|++++.+|+.+|++.+.++.  ...........+.|. .   ..++||++++ ++    ++.++|.+++..
T Consensus       124 ~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~--~~r~~~q~~~~~~~~-~---ad~vIdn~~~-~~~~~~~~~~~i~~~~~~  196 (206)
T 1jjv_A          124 CDRILVVDVSPQTQLARSAQRDNNNFEQI--QRIMNSQVSQQERLK-W---ADDVINNDAE-LAQNLPHLQQKVLELHQF  196 (206)
T ss_dssp             CSEEEEEECCHHHHHHHHC-----CHHHH--HHHHHHSCCHHHHHH-H---CSEEEECCSC-HHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHH--HHHHHhcCChHHHHH-h---CCEEEECCCC-ccccHHHHHHHHHHHHHH
Confidence            57899999999999999999864332211  000000001122222 2   2389999995 99    999999988865


Q ss_pred             c
Q psy16563        252 L  252 (259)
Q Consensus       252 ~  252 (259)
                      +
T Consensus       197 ~  197 (206)
T 1jjv_A          197 Y  197 (206)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.36  E-value=1.1e-11  Score=97.65  Aligned_cols=73  Identities=18%  Similarity=0.298  Sum_probs=38.5

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCC---chHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~---~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .++++||++|++++.+|+.+|+..   ...+...+............|...+   .++||+++.++++++++|.+.+..
T Consensus        97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a---~~~id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A           97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIA---DVTIRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHC---SEEC-----CHHHHHHHHHHHHC-
T ss_pred             CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhC---CEEEECCCCCHHHHHHHHHHHHHh
Confidence            367999999999999999887421   1010001111222223334454433   499999965699999999988753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.36  E-value=6.6e-12  Score=99.36  Aligned_cols=157  Identities=15%  Similarity=0.075  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccc-----c--ch------HHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAH-----D--SL------LRRAYYSLGNYIAAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~-----~--~~------~~~~~~~~~~~~~~~~i~  125 (259)
                      ++|+|.|++||||||+++.|++.++..++..   ..+.+++.....     .  .+      .....+..........+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~---~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF---GVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE---EHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe---ccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHH
Confidence            4699999999999999999999988654421   012222211100     0  00      000001000001112233


Q ss_pred             HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                      ..+ .|..||+|-.+......                 ...+.....  ..+..+|||+||++++.+|+.+|+...... 
T Consensus        81 ~~~~~g~~vi~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~-  140 (178)
T 1qhx_A           81 AMARAGARIIIDDVFLGGAAA-----------------QERWRSFVG--DLDVLWVGVRCDGAVAEGRETARGDRVAGM-  140 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHH-----------------HHHHHHHHT--TCCEEEEEEECCHHHHHHHHHHTSSSCTTH-
T ss_pred             HHHhcCCeEEEEeccccChHH-----------------HHHHHHHhc--CCcEEEEEEECCHHHHHHHHHhhCCcccch-
Confidence            333 56678887532211000                 001111111  123468999999999999999987432110 


Q ss_pred             HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        205 ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                          .       ...+....  ....++||+++.+++++++.|.+.+
T Consensus       141 ----~-------~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          141 ----A-------AKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             ----H-------HHHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             ----h-------hhhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence                0       01111111  1246899999977999999987654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.33  E-value=6.4e-11  Score=95.84  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=46.8

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-CCCC-eEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-NNPE-LVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-~~~~-~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .+|++|||+||++++.+|+.+|...+..+     .....+.....|.+. .... +++||+++.+++++.+.|.+.+.
T Consensus       135 ~~d~~i~l~a~~e~~~~R~~~r~~~~~~~-----~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          135 EAAHKFYLTASPEVRAWRRARERPQAYEE-----VLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHTSSSCHHH-----HHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCHHHHHHHHHhhcccCHHH-----HHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            37899999999999999999886533211     122222222223221 1223 59999998559999999998875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.33  E-value=4.2e-11  Score=98.43  Aligned_cols=76  Identities=13%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             CCCCEEEEEecCHHHHHHHHh----hccCCchHHHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEeCCCCCHhhHHHH
Q psy16563        174 MKPDLVIYLTVSEAIRLQRLS----RRKNFTLEENELKKNAKFRELLTTIY----RNMNN-PELVFVDNSEKSVHESSND  244 (259)
Q Consensus       174 ~~pdlvI~L~a~~ev~~~Rl~----~R~~~~~~~~~~e~~~~~~~~~~~~y----~~~~~-~~~~vID~s~~~~eev~~~  244 (259)
                      ..+|++|||++|++++.+|+.    .|+.....+..   ...+.++....|    .++.. ...++||+++.+++++.++
T Consensus       139 ~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~---~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~  215 (227)
T 1cke_A          139 PDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERL---LAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEK  215 (227)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHH---HHHHC-------------CCCCTTCEEEETTTSCHHHHHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHH---HHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHH
Confidence            347999999999999999943    44421111111   112223322222    22222 2358999996559999999


Q ss_pred             HHHHHhcc
Q psy16563        245 IVELIHNL  252 (259)
Q Consensus       245 I~~~l~~~  252 (259)
                      |.+.+...
T Consensus       216 I~~~l~~~  223 (227)
T 1cke_A          216 ALQYARQK  223 (227)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.32  E-value=6.6e-11  Score=98.08  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             CCEEEEEecCHHHHHHHHhhc----c-CCchHHHHHHHHHHHHHHHHHHHHhcC--CCC--eEEEeCCCCCHhhHHHHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRR----K-NFTLEENELKKNAKFRELLTTIYRNMN--NPE--LVFVDNSEKSVHESSNDIV  246 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R----~-~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~~--~~vID~s~~~~eev~~~I~  246 (259)
                      .++.|||++|++++.+|..++    + ..+..+.. . ...-...... ...+.  .+.  -++||++..+++++.+.|.
T Consensus       146 a~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~-~-~i~~rD~~d~-~r~~~pl~~~~dal~IDTs~l~iee~v~~I~  222 (233)
T 3r20_A          146 ADVKIFLTASAEERARRRNAQNVANGLPDDYATVL-A-DVQRRDHLDS-TRPVSPLRAADDALVVDTSDMDQAQVIAHLL  222 (233)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHH-H-HHHHHHHHHH-HSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHH-H-HHHHHHHhhh-hccccccccccCcEEEECCCCCHHHHHHHHH
Confidence            468999999999999998752    3 22222110 0 1111111111 11222  111  3999999988999999999


Q ss_pred             HHHhcc
Q psy16563        247 ELIHNL  252 (259)
Q Consensus       247 ~~l~~~  252 (259)
                      +.+...
T Consensus       223 ~~i~~~  228 (233)
T 3r20_A          223 DLVTAQ  228 (233)
T ss_dssp             HHC---
T ss_pred             HHHHHh
Confidence            988764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.31  E-value=7.9e-12  Score=103.14  Aligned_cols=76  Identities=12%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             CEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc-----CCC--CeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-----NNP--ELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       177 dlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~-----~~~--~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      .++|||++|++++.+|+.+|.+.+..+. .+......+.....|..+     ..+  ..++||++..+++++++.|.+.+
T Consensus       138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a-~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i  216 (223)
T 3hdt_A          138 LIRIFVYTDKVKKVQRVMEVDCIDEERA-KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYI  216 (223)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHH
Confidence            4799999999999999988754332221 111122223334445532     122  25999999988999999999999


Q ss_pred             hccc
Q psy16563        250 HNLP  253 (259)
Q Consensus       250 ~~~~  253 (259)
                      +...
T Consensus       217 ~~~~  220 (223)
T 3hdt_A          217 RLKG  220 (223)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            7653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.31  E-value=5.3e-12  Score=102.64  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=47.0

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchH-HHHHH-HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLE-ENELK-KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~-~~~~e-~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .+|.+|||++|++++.+|+..|+..... ...+. ..........+.+.+. ...+++||++.+ ++++.++|.+.+...
T Consensus       129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~Id~~~~-~eev~~~I~~~l~~~  206 (207)
T 2qt1_A          129 IWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDI-TWEVVYLDGTKS-EEDLFLQVYEDLIQE  206 (207)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGC-SSCCEEEETTSC-HHHHHHHHHHHHTTT
T ss_pred             hcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhc-CCeEEEecCCCC-HHHHHHHHHHHHHhh
Confidence            4789999999999999999888622110 11111 0111111111222222 124678999987 999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.30  E-value=2.1e-11  Score=98.29  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHH--HhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY--RNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y--~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +|.+|||++|++++.+|+..|+..+..+.     ..........+  ...+   .++||++++ ++++.++|.+.+..+.
T Consensus       125 ~d~~i~l~~~~e~~~~R~~~R~~~~~~~~-----~~~i~~~~~~~~~~~~a---d~vId~~~~-~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          125 LHGTLLVAAPLEERVRRVMARSGLSREEV-----LARERAQMPEEEKRKRA---TWVLENTGS-LEDLERALKAVLAELT  195 (203)
T ss_dssp             SSEEEEECCCHHHHHHHHHTTTCCTTHHH-----HHHHTTSCCHHHHHHHC---SEEECCSSH-HHHHHHHHHHHHHSCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCCHHHH-----HHHHHHCCChhHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHHH
Confidence            68999999999999999999864332211     00110000111  1222   278999985 9999999999998654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.30  E-value=6.9e-11  Score=95.30  Aligned_cols=31  Identities=26%  Similarity=0.271  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .++|+|+|++||||||+++.|++.+|..++.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid   42 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN   42 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence            5679999999999999999999998887664

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.30  E-value=1e-10  Score=94.65  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH-----HHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT-----IYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~-----~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      +|.+|||++|++++.+|+.+|+ .+.++        ..+++..     .|.+.   ..++||++.+ ++++.++|.+.+.
T Consensus       124 ~~~~i~l~~~~e~~~~Rl~~R~-~~~~~--------~~~~~~~~~~~~~~~~~---ad~vId~~~~-~~~~~~~i~~~l~  190 (204)
T 2if2_A          124 YDKLIVVYAPYEVCKERAIKRG-MSEED--------FERRWKKQMPIEEKVKY---ADYVIDNSGS-IEETYKQVKKVYE  190 (204)
T ss_dssp             SSEEEEECCCHHHHHHHHHHTC-CCHHH--------HHHHHTTSCCHHHHGGG---CSEECCCSSC-HHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHcC-CCHHH--------HHHHHHhCCChhHHHhc---CCEEEECCCC-HHHHHHHHHHHHH
Confidence            6889999999999999999984 32211        1111111     12221   2378999965 9999999999997


Q ss_pred             cc
Q psy16563        251 NL  252 (259)
Q Consensus       251 ~~  252 (259)
                      .+
T Consensus       191 ~~  192 (204)
T 2if2_A          191 EL  192 (204)
T ss_dssp             TT
T ss_pred             HH
Confidence            65

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.27  E-value=5.3e-10  Score=93.27  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +.+|+|.|++||||||+++.|++++|...+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            456999999999999999999999986543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.26  E-value=8.8e-11  Score=98.47  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCEEEEEecCHHHHHHHHhhcc----CCchHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEE----eCCCCCHhhHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRK----NFTLEENELKKNAKFRELLTTIYRN----MNNPELVFV----DNSEKSVHESSN  243 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~----~~~~~~~~~e~~~~~~~~~~~~y~~----~~~~~~~vI----D~s~~~~eev~~  243 (259)
                      +|++|||++|++++++|+..|+    +.+.++.    ...+..+....|.+    ......++|    |++.+ ++++.+
T Consensus       151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i----~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s-~e~v~~  225 (252)
T 1uj2_A          151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQI----LSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVA-INLIVQ  225 (252)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH----HHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHH-HHHHHH
T ss_pred             cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHH----HHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhH-HHHHHH
Confidence            5789999999999999998885    2222211    11122222222332    112233666    88555 999999


Q ss_pred             HHHHHHhcc
Q psy16563        244 DIVELIHNL  252 (259)
Q Consensus       244 ~I~~~l~~~  252 (259)
                      +|.+.+...
T Consensus       226 ~I~~~l~~~  234 (252)
T 1uj2_A          226 HIQDILNGG  234 (252)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHccc
Confidence            999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.26  E-value=1.4e-11  Score=100.05  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             EEEEEe-cCHHHHHHHHhhccCCchHHHHHHHHHH-HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        178 LVIYLT-VSEAIRLQRLSRRKNFTLEENELKKNAK-FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       178 lvI~L~-a~~ev~~~Rl~~R~~~~~~~~~~e~~~~-~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++|||+ +|++++.+|+.+|+..+..+  .+.... ..+.+...|....  + ++|+++ + +++++++|.++|...
T Consensus       128 ~~i~l~~~s~e~l~~Rl~~R~~~~~~~--i~~rl~~~~~~~~~~~~~~~--d-~vi~n~-~-~e~~~~~i~~~i~~~  197 (204)
T 2qor_A          128 IYIFVKPPSIDILLGRLKNRNTEKPEE--INKRMQELTREMDEADKVGF--N-YFIVND-D-LARTYAELREYLLGS  197 (204)
T ss_dssp             EEEEEECSCHHHHHHHHHTCTTSCHHH--HHHHHHHHHHHHHHHHHHTC--S-EEEECS-S-HHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHhhhccC--c-EEEECc-C-HHHHHHHHHHHHHHH
Confidence            689998 99999999999998543221  111111 1111111133322  2 456665 4 999999999999764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.24  E-value=9.2e-12  Score=116.55  Aligned_cols=166  Identities=13%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh---hcccccCCCCchHHHHHHhccccchH---HHHHHHHHHHHHHHHHHHHh-CC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL---KASLKSTPPSSIMSLREKFDAHDSLL---RRAYYSLGNYIAAQDIKQDL-QK  130 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~l-~~  130 (259)
                      .++|+|+|++||||||+++.|++++   |..++...   .+.++..+..+..+.   ....+    ..+.+.....+ .|
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD---gD~iR~~L~~~~~fs~~dree~~----r~i~eva~~~l~~G  124 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD---GDNIRQGLNKNLGFSPEDREENV----RRIAEVAKLFADAG  124 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES---HHHHTTTTTTTCCSSHHHHHHHH----HHHHHHHHHHHHTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec---hHHhhhccCccccCChhhhHHHH----HHHHHHHHHHHhCC
Confidence            4569999999999999999999999   55443221   122332221111111   00111    01122223333 57


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHH
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNA  210 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~  210 (259)
                      .+|+.+ +..   .|..              ..+.+.........|+++|||++|++++.+|+.++. ..+  .+.. ..
T Consensus       125 ~iVI~d-~~s---~~~~--------------~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~l-y~~--aR~~-~~  182 (630)
T 1x6v_B          125 LVCITS-FIS---PYTQ--------------DRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGL-YKK--ARAG-EI  182 (630)
T ss_dssp             CEEEEE-CCC---CCHH--------------HHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSH-HHH--HTTC---
T ss_pred             CEEEEe-Cch---hhHH--------------HHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcccc-chh--hhhh-hH
Confidence            778877 321   1110              011222222223457899999999999999986421 000  0000 00


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        211 KFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       211 ~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ..+..+...|+... .+.++||+++.++++++++|.+.|....
T Consensus       183 ~~~~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~~~  224 (630)
T 1x6v_B          183 KGFTGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQERD  224 (630)
T ss_dssp             --CBTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            01122223333221 2358999998679999999999997653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.22  E-value=1.2e-09  Score=90.66  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCEEEEEecCHHHHHHHH----hhcc-CCchHHHHHHHHHHHHHHHHHHHH----hcCCC-CeEEEeCCCCCHhhHHHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRL----SRRK-NFTLEENELKKNAKFRELLTTIYR----NMNNP-ELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl----~~R~-~~~~~~~~~e~~~~~~~~~~~~y~----~~~~~-~~~vID~s~~~~eev~~~I  245 (259)
                      .|++|||+||++++.+|+    ..|+ ..+..+.    ...+.++......    +++.. ..++||+++.+++++.++|
T Consensus       153 ~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~----~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I  228 (236)
T 1q3t_A          153 AELKIFLVASVDERAERRYKENIAKGIETDLETL----KKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKI  228 (236)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHH
Confidence            478999999999999997    4565 2222111    1111111111111    12222 3489999975599999999


Q ss_pred             HHHHhc
Q psy16563        246 VELIHN  251 (259)
Q Consensus       246 ~~~l~~  251 (259)
                      .+.+..
T Consensus       229 ~~~l~~  234 (236)
T 1q3t_A          229 KAEAEK  234 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.22  E-value=3.9e-11  Score=97.09  Aligned_cols=158  Identities=13%  Similarity=0.013  Sum_probs=80.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQP  132 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~  132 (259)
                      .+|+|.|++||||||+++.|++.++..     ++.     .+.++..+.....+........ ............ .+..
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d-----~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   99 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD-----GDNVRHGLNRDLSFKAEDRAEN-IRRVGEVAKLFADAGII   99 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-----HHHHTTTTTTTCCSSHHHHHHH-HHHHHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec-----CchhhhHhhcccCcChHHHHHH-HHHHHHHHHHHHhCCce
Confidence            459999999999999999999998532     221     1222221111111111111000 011111111222 4666


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHH------hhccCCchHHHHH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRL------SRRKNFTLEENEL  206 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl------~~R~~~~~~~~~~  206 (259)
                      ++.+.....                  +.....+.....  ..+.++|||++|++++.+|+      ..|.+......  
T Consensus       100 vi~~~~~~~------------------~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~--  157 (200)
T 3uie_A          100 CIASLISPY------------------RTDRDACRSLLP--EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFT--  157 (200)
T ss_dssp             EEEECCCCC------------------HHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCB--
T ss_pred             EEEecCCch------------------HHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCC--
Confidence            665421110                  011122222211  11345799999999999997      33322110000  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCC-CCHhhHHHHHHHHHhccc
Q psy16563        207 KKNAKFRELLTTIYRNMNNPELVFVDNSE-KSVHESSNDIVELIHNLP  253 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~-~~~eev~~~I~~~l~~~~  253 (259)
                              .+...|++. ..+.++||+++ .++++++++|.+.|....
T Consensus       158 --------~~~~~~~~~-~~~~~~idt~~~~~~~e~v~~i~~~l~~~~  196 (200)
T 3uie_A          158 --------GIDDPYEPP-LNCEISLGREGGTSPIEMAEKVVGYLDNKG  196 (200)
T ss_dssp             --------TTTBCCCCC-SSCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             --------CCCCcCcCC-CCCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence                    011112221 12468999998 579999999999997653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.22  E-value=1e-11  Score=98.57  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|+++|||+||++++.+|+.+|.-  ..... . .......+...|++. ..+.++||+++.+++++.++|.+.+...
T Consensus       104 ~~~~~i~l~~~~e~~~~R~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~-~~ad~vid~~~~~~~~~~~~i~~~l~~~  176 (179)
T 2pez_A          104 LPFFEVFVDAPLHVCEQRDVKGLY--KKARA-G-EIKGFTGIDSEYEKP-EAPELVLKTDSCDVNDCVQQVVELLQER  176 (179)
T ss_dssp             CCEEEEEEECCHHHHHHHCTTSHH--HHHHT-T-SSCSCBTTTBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCHHHHHHHHhhhhH--HHHhc-c-cccccccCCccccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence            588999999999999999876420  00000 0 000000011112111 1134788888756999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.20  E-value=9.6e-11  Score=100.53  Aligned_cols=116  Identities=16%  Similarity=0.071  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh-hcccccCCCCchHHHHHHhccc-c----chHHHHHHHHHHHHHHHHHHHHh----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL-KASLKSTPPSSIMSLREKFDAH-D----SLLRRAYYSLGNYIAAQDIKQDL----  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~l----  128 (259)
                      .+|+|.|++||||||+++.|++.+ +..++..     +.+++.+... .    .+....- ........+.+...+    
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~-----D~~r~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~   76 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR-----DDYRQSIMAHEERDEYKYTKKKE-GIVTGMQFDTAKSILYGGD   76 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-----HHHHHHHTTSCCCC---CCHHHH-HHHHHHHHHHHHHHTTSCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc-----cHHHHHhccCCcccccccchhhh-hHHHHHHHHHHHHHHhhcc
Confidence            369999999999999999999975 6555532     3455443221 1    1110000 000112223344444    


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN  198 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~  198 (259)
                      .+..||+|.+..+...                  ...+..+......++.+|||++|++++.+|+.+|+.
T Consensus        77 ~g~~vi~d~~~~~~~~------------------~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (301)
T 1ltq_A           77 SVKGVIISDTNLNPER------------------RLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (301)
T ss_dssp             TCCEEEECSCCCCHHH------------------HHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred             CCCEEEEeCCCCCHHH------------------HHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence            4778999976543210                  111122222223356899999999999999999974

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.17  E-value=3.7e-11  Score=109.73  Aligned_cols=170  Identities=12%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCC
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQ  131 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~  131 (259)
                      +...+|+|+|.+||||+|+++.|.+++...++.   ...++..+..     .+.+             -+....+- .|.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~-----~~yl-------------~R~~~~lP~~G~  102 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE-----RPPQ-------------WRFWRRLPPKGR  102 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT-----SCTT-------------HHHHHHCCCTTC
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc-----CChh-------------hhHHHhCCCCCe
Confidence            345669999999999999999999999876432   1111111111     1111             11112221 699


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCc----chhhhhc---ccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch--
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPD----EDDDIYS---WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL--  201 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~----~~~~l~~---~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~--  201 (259)
                      ++|+||+|++.+.+....  | ..+   .+    .+.++..   .+.....|++++||++|++++.+|+..|... ..  
T Consensus       103 IvIfdRSwYs~~~v~rv~--g-~~~---~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~W  176 (500)
T 3czp_A          103 TGIFFGNWYSQMLYARVE--G-HIK---EAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSW  176 (500)
T ss_dssp             EEEEESCHHHHHHHHHHT--T-SSC---HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----------
T ss_pred             EEEEeCchhhHHHHHHHh--c-CCC---HHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence            999999999987665321  1 111   11    1222222   2455677999999999999999999998631 11  


Q ss_pred             -H-HHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEeCCCCC--HhhHHHHHHHHHh
Q psy16563        202 -E-ENELKKNAKFRELLTTIYRNM----N--NPELVFVDNSEKS--VHESSNDIVELIH  250 (259)
Q Consensus       202 -~-~~~~e~~~~~~~~~~~~y~~~----~--~~~~~vID~s~~~--~eev~~~I~~~l~  250 (259)
                       . ..+.+ ..++......+|+.+    .  ..+|++||++...  ...+.+.|.+.|.
T Consensus       177 k~s~~D~~-~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~  234 (500)
T 3czp_A          177 KLSPLDWK-QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQ  234 (500)
T ss_dssp             --CSSCTT-SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHH-HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHH
Confidence             0 00111 122333333333332    2  3479999999731  3445555555554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.14  E-value=4.1e-09  Score=86.00  Aligned_cols=72  Identities=21%  Similarity=0.316  Sum_probs=44.0

Q ss_pred             CCEEEEEecCHHHHHHHHh----hccCC-chHHHHHHHHHHHHHHH-HHHHH---hcCCC-CeEEEeCCCCCHhhHHHHH
Q psy16563        176 PDLVIYLTVSEAIRLQRLS----RRKNF-TLEENELKKNAKFRELL-TTIYR---NMNNP-ELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~----~R~~~-~~~~~~~e~~~~~~~~~-~~~y~---~~~~~-~~~vID~s~~~~eev~~~I  245 (259)
                      .+++|||+||++++.+|+.    .|+.. +.++.    ...+.++. .+...   +++.. ..++||+++.+++++++.|
T Consensus       136 ~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~----~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I  211 (219)
T 2h92_A          136 ADLKVYMIASVEERAERRYKDNQLRGIESNFEDL----KRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEI  211 (219)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHH----HHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHH
Confidence            5789999999999999975    34421 21111    11111111 11111   22222 3499999986699999999


Q ss_pred             HHHHhc
Q psy16563        246 VELIHN  251 (259)
Q Consensus       246 ~~~l~~  251 (259)
                      .+.+..
T Consensus       212 ~~~l~~  217 (219)
T 2h92_A          212 LAMVSQ  217 (219)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998864

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.13  E-value=5.3e-11  Score=110.45  Aligned_cols=168  Identities=13%  Similarity=0.079  Sum_probs=88.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR  137 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr  137 (259)
                      .+|+|+|++||||||+++.|++.++......+-.+.+.+++.+..+..+....... ....+...+...+ .|..||+|.
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~-~l~~i~~~~~~~l~~G~~VI~d~  451 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT-NILRVGFVASEIVKHNGVVICAL  451 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHH-HHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHH-HHHHHHHHHHHHHhCCCEEEEEc
Confidence            45999999999999999999999885321111112345555543332221100000 0001122223333 578899983


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCC-EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD-LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pd-lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~  216 (259)
                      ..    .|...              ......++.   .++ ++|||++|++++.+|+. |+.... +. .. ....+..+
T Consensus       452 ~~----~~~~~--------------r~~~~~~l~---~~d~~vV~L~~~~e~~~~Rl~-r~~~~~-~~-~~-~i~~~~~v  506 (546)
T 2gks_A          452 VS----PYRSA--------------RNQVRNMME---EGKFIEVFVDAPVEVCEERDV-KGLYKK-AK-EG-LIKGFTGV  506 (546)
T ss_dssp             CC----CCHHH--------------HHHHHTTSC---TTCEEEEEEECCGGGHHHHCC-SSHHHH-C--------CCBTT
T ss_pred             CC----CCHHH--------------HHHHHHHhh---cCCEEEEEEeCCHHHHHHHhh-cccccc-cc-HH-HHHHHHhh
Confidence            21    11110              111122221   256 89999999999999986 331100 00 00 00000011


Q ss_pred             HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ++.|.+. ..+.++||+++.++++++++|.+.|....
T Consensus       507 r~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~~g  542 (546)
T 2gks_A          507 DDPYEPP-VAPEVRVDTTKLTPEESALKILEFLKKEG  542 (546)
T ss_dssp             TBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             hhccccc-cCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            1112211 12369999986669999999999997643

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.06  E-value=1.7e-10  Score=105.45  Aligned_cols=171  Identities=15%  Similarity=0.201  Sum_probs=101.3

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc---CCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CC
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS---TPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QK  130 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~  130 (259)
                      +...+|+|+|.+||||+|+++.|.+++...++.   ...++..+..     .+.+              .+....+  .|
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~-----~~yl--------------~R~~~~lP~~G  358 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA-----QPYL--------------WRFWRHIPARR  358 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT-----SCTT--------------HHHHTTCCCTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc-----chHH--------------HHHHHhCCCCC
Confidence            345679999999999999999999999876432   1111111110     1111              1112223  59


Q ss_pred             CcEEEcCCccchhhhhhhhhhccccCCCCCcch----hhhhcc---cccCCCCCEEEEEecCHHHHHHHHhhccC-C---
Q psy16563        131 QPVVMDRFWHSTSAYGMANELVKNSDLKLPDED----DDIYSW---PKDLMKPDLVIYLTVSEAIRLQRLSRRKN-F---  199 (259)
Q Consensus       131 ~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~----~~l~~~---~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~---  199 (259)
                      .++|+||+|++.+.+....  | ..  . ++..    .++..+   +.....|++++||++|++++.+|+..|.. .   
T Consensus       359 ~i~IfDRswY~~~~v~rv~--g-~~--~-~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~  432 (500)
T 3czp_A          359 QFTIFDRSWYGRVLVERIE--G-FC--A-PADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR  432 (500)
T ss_dssp             CEEEEESCGGGGGTHHHHH--T-SS--C-HHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred             eEEEEeCcchhhHHHHHHh--c-CC--C-HHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            9999999999987665321  1 11  1 1211    222222   34456689999999999999999998852 1   


Q ss_pred             ---chHHH-HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCC--HhhHHHHHHHHHhc
Q psy16563        200 ---TLEEN-ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKS--VHESSNDIVELIHN  251 (259)
Q Consensus       200 ---~~~~~-~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~--~eev~~~I~~~l~~  251 (259)
                         ++.+. ..+...+|.+...+.+....  ..+|++|+++...  .-.+.+.|.+.|..
T Consensus       433 Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~  492 (500)
T 3czp_A          433 YKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA  492 (500)
T ss_dssp             SCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence               11111 11112345444444444443  3579999999831  34566666665544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.06  E-value=6.5e-09  Score=88.88  Aligned_cols=117  Identities=11%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh--cccccCC-----CCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK--ASLKSTP-----PSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-  128 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~--~~~~~~p-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-  128 (259)
                      ..+|+|.|++||||||+++.|++.++  ..+++..     -..+..+.+.+.... .... .++   .......+...+ 
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~-~~~---~~~~~~~v~~~l~  108 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT-PYS---NRMTEAIISRLSD  108 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhh-HHH---HHHHHHHHHHHHh
Confidence            34699999999999999999999884  3333210     000111112222211 1100 000   011223344444 


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHH----HHHHhhc
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIR----LQRLSRR  196 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~----~~Rl~~R  196 (259)
                      .|..||+|..+.....                  ...+...+.....+..++++.+|++++    .+|+..|
T Consensus       109 ~g~~vIld~~~~~~~~------------------~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDV------------------PIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HTCCEEECCCCCCSHH------------------HHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCHHH------------------HHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            5888999965543211                  111111122222344579999999999    8887654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.05  E-value=1.2e-10  Score=108.55  Aligned_cols=171  Identities=12%  Similarity=0.030  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc-ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL-KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      .++|+|+|++||||||+++.|++.++... ....-.+.+.++..+..+..+....- ..........+.... .|..||+
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er-~~~i~ri~~v~~~~~~~g~~VI~  474 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDR-HTNIQRIAFVATELTRAGAAVIA  474 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHH-HHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHH-HHHHHHHHHHHHHHHhCCCEEEE
Confidence            34699999999999999999999988421 10000123445544433222211000 000011222333333 5778888


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      +-.  +.  |...              ...+..+.... -++++|||++|++++.+|..+ +-.  ...... ....+..
T Consensus       475 ~~i--s~--~~~~--------------R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~r-~l~--~~~~~~-~i~~~~~  531 (573)
T 1m8p_A          475 API--AP--YEES--------------RKFARDAVSQA-GSFFLVHVATPLEHCEQSDKR-GIY--AAARRG-EIKGFTG  531 (573)
T ss_dssp             ECC--CC--CHHH--------------HHHHHHHHHTT-SEEEEEEECCCHHHHHHHCSS-CHH--HHHHTT-SSSSCBT
T ss_pred             EcC--CC--cHHH--------------HHHHHHHHHhc-CCeEEEEEeCCHHHHHHHhcc-cch--hhhhHH-HHHHHHh
Confidence            721  11  1110              11111111111 145899999999999999532 100  000000 0000001


Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ..+.|... ..+.++||+++.++++++++|.+.|....
T Consensus       532 ~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~~~  568 (573)
T 1m8p_A          532 VDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLESQG  568 (573)
T ss_dssp             TTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred             cccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            11111111 12358999998779999999999997754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.05  E-value=2.4e-10  Score=92.23  Aligned_cols=29  Identities=17%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|..  |+|.||+||||||+++.|+..+.
T Consensus         4 m~~g~i--i~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            4 MNKANL--FIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             -CCCCE--EEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCCcE--EEEECcCCCCHHHHHHHHHhhCC
Confidence            344554  99999999999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.93  E-value=3.5e-10  Score=91.35  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +|+|.|++||||||+++.|++.+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            49999999999999999999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.92  E-value=2.2e-09  Score=85.87  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |+|.||+||||||+++.|.+.+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999887653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.91  E-value=3.9e-10  Score=91.81  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+|+|.||+||||||+++.|++.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            45999999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.88  E-value=2.1e-08  Score=79.96  Aligned_cols=62  Identities=16%  Similarity=0.092  Sum_probs=36.5

Q ss_pred             EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCC---CHhhHHHHHH
Q psy16563        178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEK---SVHESSNDIV  246 (259)
Q Consensus       178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~---~~eev~~~I~  246 (259)
                      .+++|++|++++.+|+..|......+.  ..... .+    .+.++......+|+++..   ++++++++|.
T Consensus       104 ~~i~L~~~~e~l~~R~~~r~~d~~ld~--~~~~~-~~----~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          104 RFIILWTNREELLRRDALRKKDEQMGE--RCLEL-VE----EFESKGIDERYFYNTSHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             EEEEEECCHHHHHHHTTTSCC----CG--GGGHH-HH----HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHhccccccCCH--HHHHH-HH----HHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence            468999999999999998863211111  10111 22    233333334577888765   5777777776

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.87  E-value=1.2e-08  Score=85.98  Aligned_cols=174  Identities=14%  Similarity=0.090  Sum_probs=98.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC---CCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh--CCCc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST---PPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL--QKQP  132 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l--~~~~  132 (259)
                      ..+|+|+|.+||||+++++.|.++++..++..   ..++-.+..     .+.+              .+....+  .|.+
T Consensus        75 ~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~-----~~yl--------------wR~~~~lP~~G~I  135 (289)
T 3rhf_A           75 RLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS-----HDFL--------------WRIEKQVPAAGMV  135 (289)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT-----SCTT--------------HHHHTTCCCTTCE
T ss_pred             cEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc-----CCHH--------------HHHHHhCCCCCeE
Confidence            45699999999999999999999998775421   111111100     0001              1122333  5999


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchh---hhhcccccCCCCCEEEEEecCHHHHHHHHhhccC-Cc------hH
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDD---DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN-FT------LE  202 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~---~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~-~~------~~  202 (259)
                      +|+||+|++.....-..  |-..+......+.   .+...+......-+.+||.+|.+++.+|+.+|.. ..      +.
T Consensus       136 ~IFdRSwY~~vlverV~--g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~  213 (289)
T 3rhf_A          136 GVFDRSQYEDVLIHRVH--GWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRG  213 (289)
T ss_dssp             EEEESCGGGGGTHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHH
T ss_pred             EEEeCchhhhHhHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHH
Confidence            99999999876543211  1100000000111   1222233444566789999999999999998852 11      11


Q ss_pred             HH-HHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCC--HhhHHHHHHHHHhcc
Q psy16563        203 EN-ELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKS--VHESSNDIVELIHNL  252 (259)
Q Consensus       203 ~~-~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~--~eev~~~I~~~l~~~  252 (259)
                      +. +.+...+|.+...+.+....  ..||++|+++...  --.+.+.|.+.|+.+
T Consensus       214 D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~  268 (289)
T 3rhf_A          214 DLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGL  268 (289)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence            11 11112333444444443332  3579999999851  123667777777665

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.85  E-value=3e-09  Score=84.84  Aligned_cols=69  Identities=14%  Similarity=0.135  Sum_probs=44.8

Q ss_pred             EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+++.++.+++.+|+..|+.....+      ....+.+.+.+.++.....++||+++.++++++++|.+.+...
T Consensus       108 ~~ls~~~~~~v~~~R~~~r~~~~lld------~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~~  176 (191)
T 1zp6_A          108 HYIVLRTTAAEAIERCLDRGGDSLSD------PLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSG  176 (191)
T ss_dssp             EEEEEECCHHHHHHHHHTTCTTSCCC------HHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             EEEEecCCHHHHHHHHHhcCCCccCC------HHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHhh
Confidence            47899999999999999986421110      1122223333333322234678988766999999999988653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.83  E-value=2.8e-09  Score=95.81  Aligned_cols=104  Identities=17%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~v  133 (259)
                      .+...+|+|.|++||||||+++.|++.++..++...     .+       ..+          ......+...+ .+..|
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D-----~~-------~~~----------~~~~~~~~~~l~~g~~v  312 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD-----TL-------GSW----------QRCVSSCQAALRQGKRV  312 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG-----GS-------CSH----------HHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc-----hH-------HHH----------HHHHHHHHHHHhcCCcE
Confidence            334568999999999999999999999987776431     11       001          01122223333 67889


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccC
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN  198 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~  198 (259)
                      |+|.........                  ..+.........+..+|||++|.+++.+|+..|..
T Consensus       313 IiD~~~~~~~~r------------------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          313 VIDNTNPDVPSR------------------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             EEESCCCSHHHH------------------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHH------------------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence            999654432111                  11111111122345689999999999999999863

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.83  E-value=2.7e-09  Score=92.44  Aligned_cols=27  Identities=30%  Similarity=0.244  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+|+|.|++||||||+++.|+..++
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            355799999999999999999999876

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.82  E-value=7.3e-09  Score=83.73  Aligned_cols=26  Identities=19%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|+|.|++||||||+++.|+..+.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34699999999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.82  E-value=2e-08  Score=84.07  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+|+|.|++||||||+++.|++.++.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~~   58 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQG   58 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            346999999999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.78  E-value=8.9e-08  Score=77.52  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.|++||||||+++.|+..++
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999999988

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.78  E-value=1.6e-07  Score=87.05  Aligned_cols=203  Identities=12%  Similarity=0.041  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHHhhc----cCChHHHHHHHH-HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         10 QYPSLVSVLSILKSAQ----YSSLPEVEELLN-IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        10 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.-|-..+++.|..-.    .-..+++..... .++          ....+|..  |+|.|++||||||+++.|+..++.
T Consensus       328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~----------~~~~~G~i--I~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTP----------PRERQGFT--VFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSC----------CGGGSCEE--EEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcc----------cccccceE--EEEECCCCChHHHHHHHHHHhhcc
Confidence            4446677888887611    111134433332 221          12444544  999999999999999999999873


Q ss_pred             cc---ccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCC
Q psy16563         85 SL---KSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLP  160 (259)
Q Consensus        85 ~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~  160 (259)
                      ..   +..  ...+.+++.......+....... ............. .+..++.........                 
T Consensus       396 ~~G~~i~~--lDgD~~~~~l~~~l~f~~~~r~~-~~r~i~~v~q~l~~~~~ivi~~~~~~~~~-----------------  455 (552)
T 3cr8_A          396 MGGRCVTL--LDGDIVRRHLSSELGFSKAHRDV-NVRRIGFVASEITKNRGIAICAPIAPYRQ-----------------  455 (552)
T ss_dssp             TCSSCEEE--ESSHHHHHHTTSSCCCSHHHHHH-HHHHHHHHHHHHHHTTCEEEECCCCCCHH-----------------
T ss_pred             cCCceEEE--ECCcHHHHhhccccCCCHHHHHH-HHHHHHHHHHHHHhcCCEEEEecCCccHH-----------------
Confidence            21   100  01223333221111111100000 0001111111122 455666543210000                 


Q ss_pred             cchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEeCCCCCH
Q psy16563        161 DEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNN--PELVFVDNSEKSV  238 (259)
Q Consensus       161 ~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~--~~~~vID~s~~~~  238 (259)
                       .......++.... ..++|||++|.+++.+|.. |+-.....      ...+..+......++.  .+.++||++..++
T Consensus       456 -~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~-r~l~~~~~------~~~i~~l~~~r~~~e~P~~adl~Idt~~~s~  526 (552)
T 3cr8_A          456 -TRRDVRAMIEAVG-GFVEIHVATPIETCESRDR-KGLYAKAR------AGLIPEFTGVSDPYEVPETPELAIDTTGLAI  526 (552)
T ss_dssp             -HHHHHHHHHHTTS-EEEEEEECC------------------------------------CCCCCCSSCSEEECCSSCCH
T ss_pred             -HHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhcc-cccccccc------HhHHHHHHhccccccCCCCCCEEEECCCCCH
Confidence             0011111111111 2368999999999999974 33111000      0001111111122222  1358999998779


Q ss_pred             hhHHHHHHHHHhccc
Q psy16563        239 HESSNDIVELIHNLP  253 (259)
Q Consensus       239 eev~~~I~~~l~~~~  253 (259)
                      ++++++|.+.|....
T Consensus       527 ~e~v~~Il~~L~~~~  541 (552)
T 3cr8_A          527 DEAVQQILLKLEHEG  541 (552)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999997643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.77  E-value=4e-09  Score=87.02  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=19.8

Q ss_pred             CCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH-HHhh
Q psy16563         48 QDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA-KKLK   83 (259)
Q Consensus        48 ~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~-~~~~   83 (259)
                      +.|....+|..  |+|.||+||||||+++.|+ ..+.
T Consensus        19 ~~sl~v~~G~i--i~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           19 PGSMLKSVGVI--LVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             ---CCEECCCE--EEEECSCC----CHHHHHHC----
T ss_pred             CCCcccCCCCE--EEEECCCCCCHHHHHHHHHhcCCC
Confidence            34455666665  9999999999999999999 7763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.72  E-value=7.7e-08  Score=82.93  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|+|.|++||||||+++.|+..++
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34699999999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.71  E-value=1.1e-07  Score=79.15  Aligned_cols=39  Identities=18%  Similarity=0.084  Sum_probs=26.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+++.|....+|.  +|+|.|++||||||+++.|+..+|..
T Consensus        14 ~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           14 GTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ---------CCSE--EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHhchh
Confidence            4455555566554  49999999999999999999988754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.66  E-value=1.7e-08  Score=86.42  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++|+|+|++||||||+++.|++.++
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999888

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.60  E-value=2.1e-07  Score=73.65  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.||+||||||+++.|+..+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            499999999999999999999764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.60  E-value=4.8e-07  Score=83.46  Aligned_cols=31  Identities=26%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ...+|++.|++||||||+++.|++.++..++
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~   64 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV   64 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            3457999999999999999999999986654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.55  E-value=1.5e-07  Score=78.79  Aligned_cols=30  Identities=17%  Similarity=0.181  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|.|++||||||+++.|++.++..++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~   31 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVA   31 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEe
Confidence            369999999999999999999999876654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.53  E-value=1.2e-07  Score=76.85  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=23.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|+|.|++||||||+++.|+..+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3599999999999999999999987

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.43  E-value=1.4e-06  Score=71.29  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.||+||||||+++.|+..+.
T Consensus        13 ~~~G~i--i~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTL--YIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCE--EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHhccCC
Confidence            445555  99999999999999999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.31  E-value=4.4e-07  Score=78.81  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .++|+|.||+||||||++..||+.++..+++
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs   70 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVIN   70 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence            3479999999999999999999999976543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.28  E-value=1.7e-06  Score=69.53  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++|.||+||||||+++.|...+.
T Consensus         7 i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            7 VVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHhhCc
Confidence            99999999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.19  E-value=1.3e-05  Score=73.01  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE   99 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~   99 (259)
                      ..+|+|.|.+||||||+++.|++.++..++....-..+.++.
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~   80 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR   80 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence            346999999999999999999999986655433323333443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.98  E-value=2.5e-05  Score=61.07  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHH
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTV   78 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l   78 (259)
                      ...+|..  ++|.|++||||||+++.+
T Consensus         5 ~i~~gei--~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            5 TIPELSL--VVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEESSEE--EEEECCTTSCHHHHHHHH
T ss_pred             cCCCCEE--EEEECCCCCCHHHHHHHH
Confidence            4556655  999999999999999974

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.96  E-value=4.3e-06  Score=68.23  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=24.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|..  ++|.||+||||||+++.|+..+
T Consensus        12 ~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CCCC--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhC
Confidence            34556667888877  9999999999999999999977

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.83  E-value=6.3e-05  Score=60.47  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|+|+|.+||||+|+++.|.+.++
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g   36 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLG   36 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcC
Confidence            45799999999999999999999886

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=2.4e-05  Score=61.83  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .++|.|++||||||+++.|+..++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999998863

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.69  E-value=7.6e-06  Score=67.66  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        20 ~L~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           20 ALKNVNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eEEeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            56667778888887  99999999999999999987543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.69  E-value=6.9e-06  Score=69.53  Aligned_cols=44  Identities=23%  Similarity=0.077  Sum_probs=34.4

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|++...++++.|..+.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        16 ~y~~~~~~L~~isl~i~~Ge~--~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           16 NYSDGTHALKGINMNIKRGEV--TAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             ECTTSCEEEEEEEEEEETTSE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EECCCCeEEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCC
Confidence            343333356677778888887  99999999999999999987653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.67  E-value=2.5e-05  Score=62.79  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|++  |+|.||+||||||+++.|.+.+.
T Consensus        16 ~~~g~~--ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKT--LVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCE--EEEECcCCCCHHHHHHHHHhhCC
Confidence            445554  99999999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.63  E-value=2.6e-05  Score=67.40  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|.||+||||||++..|++.++..+++
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis   35 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELIS   35 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEe
Confidence            469999999999999999999999876543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.62  E-value=6.2e-06  Score=70.81  Aligned_cols=39  Identities=18%  Similarity=0.083  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++++.+..+.+|..  ++|.||+||||||+++.|+..+...
T Consensus       115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~~G~  153 (305)
T 2v9p_A          115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFLGGS  153 (305)
T ss_dssp             HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred             hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhcCce
Confidence            34444556777777  9999999999999999999987443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.62  E-value=2.9e-05  Score=62.56  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.4

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+|..  ++|.||+||||||+++.|+..+.
T Consensus        16 ~i~~Gei--~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRV--VVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCE--EEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            4666666  99999999999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.62  E-value=1e-05  Score=66.41  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=30.7

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        19 ~l~~vsl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           19 ILKGISLSVKKGEF--VSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEEEEEETTCE--EEEEECTTSCHHHHHHHHTTSSC
T ss_pred             eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45566677888887  99999999999999999987543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.60  E-value=1.3e-05  Score=66.24  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        20 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           20 TLNGITFSIPEGAL--VAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             SEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTCSE
T ss_pred             eeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45566677888887  99999999999999999988653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.59  E-value=1.5e-05  Score=66.73  Aligned_cols=37  Identities=24%  Similarity=0.195  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           22 ALDGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            56667778888887  99999999999999999987653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.59  E-value=2.5e-05  Score=60.48  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=25.9

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  ++|.|++||||||+++.|+..++
T Consensus        29 ~i~~Ge~--v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           29 HTEKAIM--VYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEE--EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ccCCCCE--EEEECCCCCCHHHHHHHHHHhCC
Confidence            3566665  99999999999999999999883

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.58  E-value=1.2e-05  Score=67.71  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=32.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        25 ~vL~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           25 ALINDVSLHIASGEM--VAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEEEEEEEETTCE--EEEECCTTSCHHHHHHHHTSSSC
T ss_pred             eEEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            356667778888887  99999999999999999987653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.58  E-value=3.5e-05  Score=67.01  Aligned_cols=29  Identities=38%  Similarity=0.445  Sum_probs=25.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ++|+|.||+||||||++..|++.++..++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~ii   36 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEII   36 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCcee
Confidence            36999999999999999999999986543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.58  E-value=1.4e-05  Score=65.05  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        24 il~~vsl~i~~Ge~--~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           24 VLERITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEEEEEEEETTCC--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC
Confidence            45566677888887  9999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.57  E-value=4.3e-05  Score=65.12  Aligned_cols=27  Identities=37%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|+|.|++||||||+++.|++.++.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            456999999999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.57  E-value=1.4e-05  Score=67.18  Aligned_cols=37  Identities=22%  Similarity=0.069  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           21 VLKGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666777888887  99999999999999999987654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.55  E-value=1.8e-05  Score=66.01  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=30.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..
T Consensus        18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           18 ILKGVNLVVPKGEV--HALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCC
Confidence            45566677888887  999999999999999999985

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.55  E-value=1.9e-05  Score=69.24  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        19 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           19 VLNDISLSLDPGEI--LFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCchHHHHHHHHhcCCC
Confidence            45666777888887  99999999999999999998643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.54  E-value=1.3e-05  Score=68.89  Aligned_cols=74  Identities=18%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             ccccccHHHHHHHHHhhcc-C------------ChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHH
Q psy16563          8 FAQYPSLVSVLSILKSAQY-S------------SLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHT   74 (259)
Q Consensus         8 ~~~~~~~~~~~~~l~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~   74 (259)
                      ...+.+.+.+..+++.+.. .            ..-+++++...|+....++++.|..+.+|..  ++|.|++||||||+
T Consensus        19 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTL   96 (306)
T 3nh6_A           19 SHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT--LALVGPSGAGKSTI   96 (306)
T ss_dssp             CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCE--EEEESSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCE--EEEECCCCchHHHH
Confidence            3456777888888876211 0            0012333444554434467777778888887  99999999999999


Q ss_pred             HHHHHHHhh
Q psy16563         75 SQTVAKKLK   83 (259)
Q Consensus        75 ~~~l~~~~~   83 (259)
                      ++.|+..+.
T Consensus        97 l~ll~gl~~  105 (306)
T 3nh6_A           97 LRLLFRFYD  105 (306)
T ss_dssp             HHHHTTSSC
T ss_pred             HHHHHcCCC
Confidence            999988654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.54  E-value=1.6e-05  Score=66.82  Aligned_cols=37  Identities=16%  Similarity=0.039  Sum_probs=31.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        39 vL~~vsl~i~~Gei--~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           39 VLKGINVHIREGEV--VVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEeeEEEEcCCCE--EEEEcCCCCcHHHHHHHHHcCCC
Confidence            56667777888887  99999999999999999987653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.54  E-value=1.5e-05  Score=66.37  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        24 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           24 ILDNINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666777888887  99999999999999999987653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.54  E-value=1.5e-05  Score=66.03  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        21 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           21 AIKGIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999987643

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.54  E-value=0.00016  Score=66.28  Aligned_cols=63  Identities=16%  Similarity=0.068  Sum_probs=44.1

Q ss_pred             ccccHHHHHHHHHh----hccCChHHHHHHH-HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         10 QYPSLVSVLSILKS----AQYSSLPEVEELL-NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        10 ~~~~~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.-|--.+++.|..    |..-..|++..+. ..++..          .+.  .++|+|+|++||||||+++.|++.|+.
T Consensus       354 ~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~----------~~~--~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          354 LNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPR----------PKQ--GFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             BCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCG----------GGC--CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccc----------ccc--ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            66677888999988    2233345554444 444211          222  346999999999999999999999985

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.53  E-value=1.7e-05  Score=65.30  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        23 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           23 VLKDINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             SEEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence            45556677888887  99999999999999999988654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.53  E-value=2.1e-05  Score=66.27  Aligned_cols=35  Identities=26%  Similarity=0.119  Sum_probs=30.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..
T Consensus        35 vl~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           35 ILRGLSLDVHPGEV--HAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCC
Confidence            56666777888887  999999999999999999885

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.53  E-value=1.9e-05  Score=66.69  Aligned_cols=37  Identities=16%  Similarity=0.077  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        34 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           34 VLQGLTFTLYPGKV--TALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eeEeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666777888887  99999999999999999987653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.52  E-value=5.2e-05  Score=59.50  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|..  ++|.||+||||||+++.++..+.
T Consensus        36 ~~g~~--~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           36 EEGKG--LTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             GGCCE--EEECCSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCE--EEEECCCCCCHHHHHHHHHHHHH
Confidence            33444  99999999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.52  E-value=1.6e-05  Score=65.97  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        17 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           17 ILRDISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             SEEEEEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45556677888877  99999999999999999987653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.52  E-value=5.5e-05  Score=64.84  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .++|+|.||+||||||++..|++.++..++
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~ii   39 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELI   39 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEE
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEE
Confidence            457999999999999999999999986543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.51  E-value=1.9e-05  Score=66.16  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        30 vl~~vsl~i~~Gei--~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           30 ILKGISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            55666677888887  99999999999999999987643

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.51  E-value=2e-05  Score=66.06  Aligned_cols=36  Identities=17%  Similarity=0.063  Sum_probs=30.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        35 vl~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           35 TLKSINFFIPSGTT--CALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             SEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEeeEEEECCCCE--EEEECCCCCCHHHHHHHHhccC
Confidence            55666677888887  9999999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.49  E-value=2e-05  Score=65.65  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +++.|....+|..  ++|.|++||||||+++.|+..+
T Consensus        16 l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           16 LGPLSGEVRAGEI--LHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence            4445567788877  9999999999999999998765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.49  E-value=2.5e-05  Score=68.98  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        18 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           18 VSKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEeeeEEEECCCCE--EEEEcCCCchHHHHHHHHHcCCC
Confidence            45666777888887  99999999999999999998653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.48  E-value=4.4e-05  Score=65.52  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=25.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ++|+|.||+||||||++..|++.++..+
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~~i   31 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNGEV   31 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTEEE
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCccce
Confidence            4699999999999999999999998653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.48  E-value=2e-05  Score=66.77  Aligned_cols=37  Identities=16%  Similarity=0.076  Sum_probs=31.5

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        36 vL~~isl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           36 ILKKISWQIAKGDK--WILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            56667777888887  99999999999999999987653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.47  E-value=2.3e-05  Score=65.95  Aligned_cols=36  Identities=28%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        22 vl~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           22 ALENVSLVINEGEC--LLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Confidence            45566677888887  9999999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.46  E-value=2.8e-05  Score=68.07  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        30 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           30 SVRGVSFQIREGEM--VGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             CEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999998653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.45  E-value=2.3e-05  Score=65.47  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+.+.|+..+.
T Consensus        20 vl~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           20 LFQQLNFDLNKGDI--LAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEEEEEEETTCE--EEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEEEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45556667888887  99999999999999999988653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.45  E-value=0.00022  Score=61.10  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=25.1

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|.  +|+|.|++||||||+++.|+..+..
T Consensus        97 ~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           97 FRKPA--VIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             SSSCE--EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCc--EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            44444  5999999999999999999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.45  E-value=3.1e-05  Score=67.97  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|....+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           18 AVDGVSFEVKDGEF--VALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEeeeEEEEcCCCE--EEEEcCCCchHHHHHHHHHCCCC
Confidence            45556677888887  99999999999999999998653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.44  E-value=3.2e-05  Score=67.93  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|....+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           18 ALNNINLKIKDGEF--MALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCC
Confidence            45556677888887  99999999999999999998653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.43  E-value=6.9e-05  Score=64.54  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|+|.|++||||||+++.|+..+.
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHhhcc
Confidence            3599999999999999999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.42  E-value=3.4e-05  Score=68.02  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        26 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           26 AVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence            45566677888887  99999999999999999998653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.42  E-value=3.4e-05  Score=67.73  Aligned_cols=37  Identities=19%  Similarity=0.036  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.|++||||||+++.|+..+.
T Consensus        43 aL~~vsl~i~~Gei--~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           43 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEeeEEEEcCCCE--EEEEcCCCchHHHHHHHHhcCCC
Confidence            56677788888887  99999999999999999987543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.42  E-value=3.7e-05  Score=68.23  Aligned_cols=38  Identities=18%  Similarity=0.086  Sum_probs=32.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|..+.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        35 ~~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           35 AILENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CSEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EEeeceeEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC
Confidence            456667778888888  99999999999999999997543

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.41  E-value=7.8e-05  Score=61.77  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=43.9

Q ss_pred             CCCEEEEEecCHHHHHHHHhhccC----CchHHHHHHHHHHHHHHHHH-HHHh-c-CCCCeEEEeCCCCCHhhHHHHHHH
Q psy16563        175 KPDLVIYLTVSEAIRLQRLSRRKN----FTLEENELKKNAKFRELLTT-IYRN-M-NNPELVFVDNSEKSVHESSNDIVE  247 (259)
Q Consensus       175 ~pdlvI~L~a~~ev~~~Rl~~R~~----~~~~~~~~e~~~~~~~~~~~-~y~~-~-~~~~~~vID~s~~~~eev~~~I~~  247 (259)
                      ..|.+|.++|++++.++|+++|+.    ......         .++.. .-+. . .....++|||+++ +++..++|.+
T Consensus       167 ~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~---------~~i~~Q~se~~~k~~~AD~VI~N~gs-le~l~~qV~~  236 (241)
T 1dek_A          167 GYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ---------KSNDTHITEAGLPIRDGDLVITNDGS-LEELFSKIKN  236 (241)
T ss_dssp             SCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC---------CCSCCSGGGSCCCCCTTCEEEECCSC-HHHHHHHHHH
T ss_pred             cCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc---------chhhcCCCcccccccCCCEEEECCCC-HHHHHHHHHH
Confidence            358899999999999999999964    111100         00000 0001 1 1224689999987 9999999998


Q ss_pred             HHhc
Q psy16563        248 LIHN  251 (259)
Q Consensus       248 ~l~~  251 (259)
                      +++.
T Consensus       237 ll~~  240 (241)
T 1dek_A          237 TLKV  240 (241)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.40  E-value=3e-05  Score=67.78  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        15 ~l~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           15 SLDNLSLKVESGEY--FVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEEEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCccHHHHHHHHHcCCC
Confidence            45556677888887  99999999999999999997643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.39  E-value=5.8e-05  Score=63.74  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=24.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ++|.||+||||||+++.|+..++..++
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            999999999999999999999876544

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.39  E-value=3.7e-05  Score=67.82  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        18 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           18 AVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCcHHHHHHHHHHcCCC
Confidence            45556677888887  99999999999999999998643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.39  E-value=3.6e-05  Score=65.60  Aligned_cols=38  Identities=13%  Similarity=0.133  Sum_probs=31.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        52 ~vl~~isl~i~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           52 PVLKDINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CSEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHTTSSC
T ss_pred             eEEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Confidence            355666677888877  99999999999999999988654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.38  E-value=4.1e-05  Score=63.47  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=27.4

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++.|....+ ..  ++|.|++||||||+++.|+..+.
T Consensus        15 l~~isl~i~~-e~--~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           15 RLNVDFEMGR-DY--CVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEEEEECS-SE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EeeeEEEECC-EE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            3444555665 55  99999999999999999998653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.38  E-value=2.8e-05  Score=68.14  Aligned_cols=37  Identities=16%  Similarity=0.055  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        20 vl~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           20 ALDNVNINIENGER--FGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             eEeceEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            45566677888887  99999999999999999998643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.36  E-value=0.00037  Score=56.18  Aligned_cols=62  Identities=15%  Similarity=0.207  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         13 SLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +...+.+.|+=+..+...-+..+..-..+.           .+.+.  |+|.||+|+||||+|..|++.+....+
T Consensus        26 ~w~~I~~~l~yq~~~~~~f~~~l~~~~~~i-----------Pkkn~--ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           26 DWRPIVQFLRYQQIEFITFLGALKSFLKGT-----------PKKNC--LVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSHHHHHHHHHTTCCHHHHHHHHHHHHHTC-----------TTCSE--EEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CHHHHHHHHHHcCcCHHHHHHHHHHHHhcC-----------CcccE--EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            556777777776666555555554444321           11223  999999999999999999999876544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.36  E-value=0.00023  Score=64.81  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=26.9

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+....+|.  +|+|.|++||||||+++.|+..+..
T Consensus       286 Isl~i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          286 LNVEGKAPF--VILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             CCCCSCTTE--EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceeeccCCe--EEEEECCCcccHHHHHHHHHHHhhh
Confidence            444445444  4999999999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.35  E-value=0.00018  Score=62.73  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ..+|..+.|+|.|++||||||+++.|++.++..+
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3345556699999999999999999999998765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.34  E-value=0.00011  Score=60.80  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ++|.||+||||||+++.++..++..++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i   78 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFI   78 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            899999999999999999998875443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.00021  Score=63.39  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.||||||||++|+.+|..++..++..
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             eEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            99999999999999999999999887643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.31  E-value=0.00011  Score=65.30  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++|+|.||+||||||++..|++.++..+++
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis   32 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN   32 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence            469999999999999999999999876543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.31  E-value=0.00078  Score=58.85  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=25.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|+|||++|+.|++.++..++.
T Consensus        54 vll~GppGtGKT~la~~ia~~~~~~~~~   81 (363)
T 3hws_A           54 ILLIGPTGSGKTLLAETLARLLDVPFTM   81 (363)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999876653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.29  E-value=0.0001  Score=57.79  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++|+|.|++||||||+++.|...+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            459999999999999999999988654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.29  E-value=0.00038  Score=61.01  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=23.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+|+|.|++||||||+++.|+..+..
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhccc
Confidence            35999999999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.29  E-value=0.00012  Score=61.27  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=24.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.||+||||||+++.|+..+.
T Consensus        22 i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           22 HRKMGL--ILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             GCSSEE--EEEECSTTCSHHHHHHHHHHHHH
T ss_pred             hCCCCE--EEEECCCCccHHHHHHHHHHhCC
Confidence            344444  99999999999999999999765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.26  E-value=0.00021  Score=55.92  Aligned_cols=28  Identities=11%  Similarity=0.061  Sum_probs=24.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .++|+|.|++||||||++..|+..+...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            5679999999999999999999987643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.26  E-value=5.3e-05  Score=63.66  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|.... |..  ++|.|++||||||+.+.|+..+
T Consensus        20 il~~vsl~i~-Ge~--~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           20 SLENINLEVN-GEK--VIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEEEEEEC-SSE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEeeeEEEC-CEE--EEEECCCCCCHHHHHHHHhCCC
Confidence            4555666777 876  9999999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0002  Score=64.14  Aligned_cols=28  Identities=29%  Similarity=0.424  Sum_probs=26.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||||||||++|+.+|..++..++.
T Consensus       209 iLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            9999999999999999999999988654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.25  E-value=0.00021  Score=60.77  Aligned_cols=29  Identities=24%  Similarity=0.247  Sum_probs=25.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+.|.||+|+|||++++.+|+.++..++.
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~   66 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKMGINPIM   66 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            48888999999999999999999887654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.25  E-value=0.0002  Score=57.09  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|++||||||+++.|+..+.
T Consensus         4 i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHHhhcc
Confidence            99999999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00023  Score=64.50  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         29 LPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..++.++...|+...       ....+|..  ++|.|++||||||+++.|+..+
T Consensus       118 mi~~~nl~~~y~~vs-------l~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          118 MKYIYNLHFMLEKIR-------MSNFEGPR--VVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHHHHHHHHHHHH-------HHSSSCCC--EEEEESTTSSHHHHHHHHHHTT
T ss_pred             hhhhhhhhehhhcCc-------eEeCCCCE--EEEECCCCCCHHHHHHHHhCcc
Confidence            356667777775332       34566666  9999999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.21  E-value=0.00052  Score=57.63  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +.|.||+|+||||+++.+++.++..++
T Consensus        54 ~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           54 ILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            999999999999999999999987654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.21  E-value=0.00026  Score=60.68  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|+|.|++||||||+++.|+..+..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            446999999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00025  Score=63.72  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=26.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.||||||||++|+.+|..++..++..
T Consensus       218 vLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999999887643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.19  E-value=0.00019  Score=60.36  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |+|.||+||||||+++.|+..++..++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            899999999999999999998875443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.18  E-value=0.00027  Score=55.51  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=24.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .++|+|.|++||||||+++.|...+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            567999999999999999999988653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.18  E-value=0.00016  Score=63.85  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=28.2

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ..++..  |+|.||+||||||+++.|+..++..++.
T Consensus       166 i~~~~~--i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          166 IPKKRY--WLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CTTCCE--EEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             cCCCCE--EEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            455554  9999999999999999999988776554

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.17  E-value=0.00099  Score=56.78  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=35.7

Q ss_pred             EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++|||..| .+++. |+.+|+..+....    .+.-..+....+....   .++|+++  ++++..+++.++|...
T Consensus       217 i~IfI~pps~~~L~-~L~~R~t~~~i~~----rl~~a~~~e~~~~~~f---d~vivNd--~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          217 IAIFIRPRSLENVL-EINKRITEEQARK----AFDRATKLEQEFTECF---SAIVEGD--SFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             EEEEECCSSHHHHH-HHCTTSCHHHHHH----HHHHHHHHHHHHGGGC---SEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHH-HHHhcCCHHHHHH----HHHHHHHHHHhccccC---eEEEECc--CHHHHHHHHHHHHHhc
Confidence            78999977 55554 4888874321111    1111111122222221   2556655  4899999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.16  E-value=0.00019  Score=54.85  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++|.|++||||||+++.++..+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            399999999999999999999874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0003  Score=63.42  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=26.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|||||++|+.+|..++..++.
T Consensus       246 ILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          246 ILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             EEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            9999999999999999999999988754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.15  E-value=0.00018  Score=58.24  Aligned_cols=29  Identities=21%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.|++||||||+++.|+..+.
T Consensus        22 i~~G~~--~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           22 IETQAI--TEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EESSEE--EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHHHHHh
Confidence            555665  99999999999999999998543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.15  E-value=0.00023  Score=59.07  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |+|.|++|+||||+++.++..++..++.
T Consensus        48 vll~G~~GtGKT~la~~la~~~~~~~~~   75 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence            8999999999999999999998866543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.15  E-value=0.00017  Score=58.29  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      ++|.|++||||||+++.|+..
T Consensus        25 ~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           25 VFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999999986

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.12  E-value=0.00027  Score=60.26  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+||||||+++.++..++..++.
T Consensus        52 vLL~Gp~GtGKT~la~ala~~~~~~~i~   79 (301)
T 3cf0_A           52 VLFYGPPGCGKTLLAKAIANECQANFIS   79 (301)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999999998876553

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.12  E-value=0.00012  Score=68.61  Aligned_cols=44  Identities=11%  Similarity=0.109  Sum_probs=34.5

Q ss_pred             HhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         38 IYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|+....++++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus       363 ~y~~~~~~l~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          363 SYDKKKPVLKDITFHIKPGQK--VALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CSSSSSCSCCSEEEECCTTCE--EEEECCTTSSTTHHHHHHTTSSC
T ss_pred             ECCCCCccccceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCcC
Confidence            443333466777777888887  99999999999999999987654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.11  E-value=0.00016  Score=67.42  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=33.5

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..++++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus       356 ~~~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             ccccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            3467778888888887  99999999999999999988654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.08  E-value=0.00025  Score=62.18  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .++|.|++||||||+++.|+..+...
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            39999999999999999999987653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0003  Score=63.12  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||||||||++|+.+|..++..++.
T Consensus       218 vLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          218 ALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999999999988654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.05  E-value=0.00033  Score=57.95  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.|++|+||||+++.+++.++..++
T Consensus        42 vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           42 ALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            899999999999999999999987654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.04  E-value=0.00017  Score=61.30  Aligned_cols=30  Identities=20%  Similarity=0.140  Sum_probs=25.9

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  ++|.|++||||||+++.|+..+.
T Consensus        31 ~l~~G~~--~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           31 GARGGEV--IMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             SBCTTCE--EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCeE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            4666766  99999999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.04  E-value=0.00033  Score=60.65  Aligned_cols=27  Identities=22%  Similarity=0.516  Sum_probs=24.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .++|.||+|+||||+++.++..++..+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            399999999999999999999997654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.02  E-value=0.00081  Score=56.85  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=24.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +.|.|++|+|||++++.+++.++..++
T Consensus        53 vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           53 ILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            899999999999999999999986543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.01  E-value=0.00044  Score=59.87  Aligned_cols=27  Identities=37%  Similarity=0.541  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|+|.|++||||||+++.|+..+..
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            446999999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.01  E-value=0.00035  Score=59.10  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=25.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      -|.|.||+|+||||+++.+++.++..++
T Consensus        56 ~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           56 GLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            3999999999999999999999987654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.00  E-value=0.0012  Score=51.11  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.|++|+||||+++.+++.+..
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3899999999999999999998754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.99  E-value=0.002  Score=57.87  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.||+||||||+++.||+.++..++
T Consensus        53 iLl~GppGtGKT~lar~lA~~l~~~~~   79 (444)
T 1g41_A           53 ILMIGPTGVGKTEIARRLAKLANAPFI   79 (444)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence            999999999999999999999988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.98  E-value=0.00034  Score=64.63  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.| .+.+|..  ++|.|++||||||+++.|+..+
T Consensus        37 ~l~~vs-~i~~Ge~--~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           37 VLYRLP-VVKEGMV--VGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEECCC-CCCTTSE--EEEECCTTSSHHHHHHHHHTSS
T ss_pred             cccCcC-cCCCCCE--EEEECCCCCCHHHHHHHHhCCC
Confidence            455566 6778777  9999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.97  E-value=0.00045  Score=60.53  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.||+||||||+++.|...+..
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccC
Confidence            5999999999999999999988753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.96  E-value=0.00059  Score=52.95  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.|++|+||||+++.+++.+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3899999999999999999999854

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.96  E-value=0.00047  Score=55.69  Aligned_cols=28  Identities=25%  Similarity=0.200  Sum_probs=23.8

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|..  ++|.|++||||||+++.++..+
T Consensus        20 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFF--IALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCE--EEEEcCCCCCHHHHHHHHHHHH
Confidence            455655  9999999999999999999765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.96  E-value=0.00018  Score=63.10  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  |+|.|++||||||+++.|...+.
T Consensus       171 ~i~~G~~--i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          171 AVQLERV--IVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHTTCC--EEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHhcCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence            3556666  99999999999999999998765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.94  E-value=0.0011  Score=50.00  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~   82 (259)
                      |.|.|++|+|||++|+.+++..
T Consensus        27 vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.92  E-value=0.00058  Score=55.34  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.|++|+||||+++.+++.+..
T Consensus        54 ~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           54 AIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3999999999999999999998874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.92  E-value=0.0002  Score=66.89  Aligned_cols=38  Identities=16%  Similarity=0.115  Sum_probs=31.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus       357 ~~l~~v~~~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          357 PALRNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CSEEEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTC
T ss_pred             ccccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccC
Confidence            355566667777776  99999999999999999988654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.91  E-value=0.00051  Score=57.80  Aligned_cols=24  Identities=33%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++|.|++||||||+.+.|+....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            489999999999999999998753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.89  E-value=0.0023  Score=54.19  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.|++|+||||+++.+++.+..
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHcC
Confidence            3999999999999999999998853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.88  E-value=0.0005  Score=60.54  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.|++||||||+++.|+..+..
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCc
Confidence            4999999999999999999998753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.88  E-value=0.00056  Score=57.19  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      -+.|.|++|+||||+|+.+++.++..++
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            3999999999999999999999887654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.88  E-value=0.00076  Score=57.79  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|+|.|++||||||++..||..+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            346999999999999999999998753

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00058  Score=61.02  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.||||||||++|+.+|..++..++..
T Consensus       219 vLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             EEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            99999999999999999999999887643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.87  E-value=0.00042  Score=57.69  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=25.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.|++|+||||+++.+++.++..++..
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            78999999999999999999998776543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.85  E-value=0.0014  Score=59.92  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |+|.||+||||||+++.++..++..++
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~~~~i   93 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEARVPFI   93 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            899999999999999999999876554

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.84  E-value=0.0006  Score=58.63  Aligned_cols=29  Identities=31%  Similarity=0.372  Sum_probs=25.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      -|.|.||+|+|||++|+.+++.++..++.
T Consensus        53 ~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            39999999999999999999999877653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.82  E-value=0.0004  Score=55.69  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .|+|.|++|+||||++..|+++.. ..+
T Consensus        36 ~ilI~GpsGsGKStLA~~La~~g~-~iI   62 (205)
T 2qmh_A           36 GVLITGDSGVGKSETALELVQRGH-RLI   62 (205)
T ss_dssp             EEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence            499999999999999999999876 443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.80  E-value=0.00079  Score=52.56  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+|.|++||||||+++.|.-.++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5999999999999999999887764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.80  E-value=0.00081  Score=53.92  Aligned_cols=26  Identities=12%  Similarity=-0.047  Sum_probs=22.9

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..+|..  ++|.|++||||||++..++.
T Consensus        17 i~~G~~--~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVL--TQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSE--EEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEE--EEEECCCCCCHHHHHHHHHH
Confidence            555555  99999999999999999998

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.79  E-value=0.0022  Score=57.62  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.+|++.|++|+||||++..||.++...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            45679999999999999999999987644

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.001  Score=52.92  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.|.|++|+||||+++.+++.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~   64 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG   64 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.78  E-value=0.00088  Score=53.88  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=23.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .++|.|++|+||||+++.+++.++..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            49999999999999999999988754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.78  E-value=0.00065  Score=58.99  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..++.  +|+|.|++||||||+.+.|+..+.
T Consensus        52 ~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           52 TGRAI--RVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             CCCSE--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCe--EEEEECCCCCCHHHHHHHHHHhhh
Confidence            44444  499999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.77  E-value=0.00091  Score=58.43  Aligned_cols=28  Identities=32%  Similarity=0.438  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|+|||++|+.+++.++..++.
T Consensus        87 iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           87 ILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            8999999999999999999999876653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.76  E-value=0.00018  Score=67.03  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|....+|..  ++|.||+||||||+++.|...+.
T Consensus       355 ~~l~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          355 PILKDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CSEEEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cceeeeEEEECCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence            355566667778877  99999999999999999987654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.75  E-value=0.00062  Score=58.58  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .++++|+|++||||||+++.|....
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            5679999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.75  E-value=0.00096  Score=53.00  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .|.|.|++|+||||+++.++..+..
T Consensus        56 ~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           56 GLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3999999999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.75  E-value=0.00082  Score=58.15  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .++-+.|.||+|+||||+++.+++.+..
T Consensus        45 ~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           45 KLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3344899999999999999999998754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.75  E-value=0.0011  Score=56.47  Aligned_cols=26  Identities=31%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|+|.|++|+||||++..|+..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44699999999999999999999876

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=96.74  E-value=0.0083  Score=57.33  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      ++||+..|.-+.++++..|+..+  +  .+..++-..+++..|...   -.++|+++  ++++.++++.++|.....
T Consensus       643 ~~ifi~pps~~~L~~l~~R~t~~--~--~~~rl~~a~~~e~~~~~~---fd~vi~Nd--~l~~a~~~l~~~i~~~~~  710 (721)
T 2xkx_A          643 IAIFIRPRSLENVLEINKRITEE--Q--ARKAFDRATKLEQEFTEC---FSAIVEGD--SFEEIYHKVKRVIEDLSG  710 (721)
T ss_pred             EEEEEeCCcHHHHHHHhccCCHH--H--HHHHHHHHHHHHHhcccc---CcEEEECc--CHHHHHHHHHHHHHhccC
Confidence            79999987555555588887431  1  111111111111112111   13566665  489999999999976543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.74  E-value=0.00058  Score=63.98  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.| .+.+|..  ++|.|++||||||+++.|+..+
T Consensus       107 ~l~~vs-~i~~Ge~--~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          107 VLYRLP-IVKDGMV--VGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEECCC-CCCTTSE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeCCCC-CCCCCCE--EEEECCCCChHHHHHHHHhCCC
Confidence            455565 5677776  9999999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.73  E-value=0.00078  Score=58.06  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh-hccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL-KASL   86 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~-~~~~   86 (259)
                      -|.|.||+|+|||++++.+++.+ +..+
T Consensus        47 ~iLL~GppGtGKT~la~ala~~~~~~~~   74 (322)
T 1xwi_A           47 GILLFGPPGTGKSYLAKAVATEANNSTF   74 (322)
T ss_dssp             EEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred             eEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence            39999999999999999999998 5444

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.73  E-value=0.001  Score=57.34  Aligned_cols=27  Identities=19%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|+|.|++|+||||++..||..+..
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            446999999999999999999998764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.72  E-value=0.00082  Score=58.99  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.|++|+||||+|+.|++.++..++
T Consensus        75 ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           75 ILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            999999999999999999999986643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.71  E-value=0.00026  Score=66.19  Aligned_cols=38  Identities=13%  Similarity=0.091  Sum_probs=31.1

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|....+|..  ++|.|++||||||+++.|+..+.
T Consensus       357 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          357 PVLSGVNFSVKPGSL--VAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             CSEEEEEEEECTTCE--EEEECSSSSSHHHHHHTTTTSSC
T ss_pred             cceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcc
Confidence            355566667777777  99999999999999999988654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.71  E-value=0.00089  Score=59.87  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.||+||||||+++.|...+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4999999999999999999998753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.70  E-value=0.00025  Score=61.51  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=24.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.|++||||||+++.|+..+.
T Consensus       168 i~~g~~--v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          168 IAIGKN--VIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HHHTCC--EEEEESTTSCHHHHHHHGGGGSC
T ss_pred             ccCCCE--EEEECCCCCCHHHHHHHHhCCCc
Confidence            445555  99999999999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.68  E-value=0.00094  Score=56.65  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.|.|++|+||||+++.+++.++..
T Consensus        70 vll~G~~GtGKT~la~~la~~l~~~   94 (309)
T 3syl_A           70 MSFTGNPGTGKTTVALKMAGLLHRL   94 (309)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0015  Score=56.17  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+.+.|.||+|+|||++++.+++.+.
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345599999999999999999999985

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.64  E-value=0.001  Score=54.22  Aligned_cols=27  Identities=19%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+|..  ++|.|++||||||++..|+..
T Consensus        21 i~~G~~--~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSI--TEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeE--EEEECCCCCcHHHHHHHHHHH
Confidence            455555  999999999999999999985

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.63  E-value=0.0014  Score=56.53  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      -+.|.||+|+||||+++.+++.++.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELYG   84 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3899999999999999999999763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.62  E-value=0.0013  Score=56.51  Aligned_cols=28  Identities=29%  Similarity=0.596  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.|++|+||||+++.+++.++..++.
T Consensus        58 vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           58 ILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            9999999999999999999998876543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.60  E-value=0.00069  Score=60.62  Aligned_cols=30  Identities=23%  Similarity=0.117  Sum_probs=24.0

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ...+|..+-++|.|++||||||+++.|+..
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            456665445899999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.60  E-value=0.0012  Score=57.13  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.+.|.||+|+||||+++.+++.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            339999999999999999999965

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.60  E-value=0.0011  Score=57.95  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      -|.|.|++|+||||+++.+++.++..++
T Consensus       119 ~vLl~GppGtGKT~la~aia~~~~~~~~  146 (357)
T 3d8b_A          119 GILLFGPPGTGKTLIGKCIASQSGATFF  146 (357)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            4999999999999999999999987654

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.59  E-value=0.004  Score=52.11  Aligned_cols=58  Identities=19%  Similarity=0.219  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         13 SLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +-..+.++|+-+..+...-...+.+-+.+.          ..+.+.  |+|.||+|+|||+++..|+..+
T Consensus        71 ~~n~i~~~l~~qg~~~~~~~~~l~~~l~~~----------~~~~n~--~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           71 SSNRIYKILELNGYDPQYAASVFLGWATKK----------FGKRNT--IWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             GGCHHHHHHHHTTCCHHHHHHHHHHHHTTC----------STTCCE--EEEECSTTSSHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHhCC----------CCCCcE--EEEECCCCCCHHHHHHHHHhhh
Confidence            345778888776666554444444544332          111224  9999999999999999999974

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.58  E-value=0.0015  Score=56.00  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.|++|+||||+++.++..+.
T Consensus        40 lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           40 IFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999883

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.57  E-value=0.00072  Score=61.47  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=25.3

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+..+.+ .  +++|.|++||||||+++.|+..+.
T Consensus        23 vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           23 RTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             EEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCC
Confidence            3334444 3  499999999999999999998764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.56  E-value=0.0013  Score=60.82  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=25.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      .+.++|.||+||||||+++.|+..++..+.
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            345999999999999999999999876543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.54  E-value=0.0016  Score=58.84  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=26.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+-+.|.||+|+||||+++.+++.++..++.
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            3459999999999999999999999876543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.54  E-value=0.00083  Score=62.03  Aligned_cols=29  Identities=17%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|..  ++|.|++||||||+++.|+..+.
T Consensus       291 i~~Gei--~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          291 AKEGEI--IGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EETTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            456665  99999999999999999988653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.54  E-value=0.0026  Score=54.15  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|++.|++|+||||++..|+..+..
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345999999999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.53  E-value=0.0031  Score=54.97  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +..++|+|.|.+|+||||++..|+..+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3466799999999999999999998874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.52  E-value=0.0015  Score=51.52  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..|+|.|++||||||+.+.|...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            45999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.52  E-value=0.001  Score=61.38  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=24.1

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|..  ++|.|++||||||+++.|+..+.
T Consensus       310 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          310 KKGEV--IGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            45665  99999999999999999998653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.52  E-value=0.0015  Score=58.81  Aligned_cols=31  Identities=19%  Similarity=0.100  Sum_probs=26.9

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...+|..  ++|.|++||||||+++.|+.....
T Consensus       153 ~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          153 TVGRGQR--MGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CCBTTCE--EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EecCCCE--EEEECCCCCCHHHHHHHHhcccCC
Confidence            4667776  999999999999999999998753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.51  E-value=0.00052  Score=65.09  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~   79 (259)
                      .+++.|..+.+|.+  ++|.||+||||||+++.+.
T Consensus       337 ~L~~vsl~I~~Ge~--vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTF--VAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSE--EEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCE--EEEEeeCCCCHHHHHHHHH
Confidence            45666677788877  9999999999999997653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0032  Score=54.62  Aligned_cols=23  Identities=39%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .++|.|++|+||||+++.+++.+
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999999987

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.50  E-value=0.0017  Score=56.56  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++|+|.|++||||||+.+.|...+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            56799999999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.50  E-value=0.0019  Score=56.14  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.||+|+|||++++.+++.++.
T Consensus        72 ~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3999999999999999999999875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.49  E-value=0.0017  Score=59.59  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      +.+.|.||+|+||||+++.+++.++..++.
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            459999999999999999999999876653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.48  E-value=0.0015  Score=59.45  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=25.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|+||||+++.++..++..++.
T Consensus        52 vLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            8999999999999999999999877653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.48  E-value=0.0015  Score=54.86  Aligned_cols=29  Identities=17%  Similarity=0.104  Sum_probs=24.1

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.|++||||||++..++..+.
T Consensus        27 l~~G~i--~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGTV--GALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTSE--EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCE--EEEEcCCCCCHHHHHHHHHHHHh
Confidence            455555  99999999999999999997553

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.48  E-value=0.0026  Score=61.33  Aligned_cols=28  Identities=29%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|||||++++.+|..++..++.
T Consensus       241 ILL~GPPGTGKT~LAraiA~elg~~~~~  268 (806)
T 3cf2_A          241 ILLYGPPGTGKTLIARAVANETGAFFFL  268 (806)
T ss_dssp             EEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            9999999999999999999999987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0011  Score=62.21  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             CCCCCCcccCCCC---CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         46 NDQDSGVGDDRKY---PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        46 ~~~~~~~~~~~~~---~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++.+....+|.+   -+++|.|++||||||+++.|+..+.
T Consensus       363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3444445555533   3599999999999999999988653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.47  E-value=0.0044  Score=55.03  Aligned_cols=28  Identities=21%  Similarity=0.076  Sum_probs=22.7

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+.+|.+  ++|.|++||||||++..|+-.
T Consensus       174 GI~~Gei--~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          174 GVETGSI--TELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             SEETTSE--EEEEESTTSSHHHHHHHHHHH
T ss_pred             CcCCCcE--EEEEcCCCCChHHHHHHHHHH
Confidence            3555555  999999999999999987643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.46  E-value=0.0012  Score=61.92  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|..  ++|.|++||||||+++.|+..+.
T Consensus       380 ~~Gei--~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          380 RKGEV--IGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            45665  99999999999999999998653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.44  E-value=0.00088  Score=61.67  Aligned_cols=36  Identities=19%  Similarity=0.050  Sum_probs=27.0

Q ss_pred             cCCCCCC-cccCCCCCeEEEEcCCCCcHHHHHHH--HHHHh
Q psy16563         45 TNDQDSG-VGDDRKYPLIVFEGLDGCGKSHTSQT--VAKKL   82 (259)
Q Consensus        45 ~~~~~~~-~~~~~~~~ii~~~g~~g~gkst~~~~--l~~~~   82 (259)
                      .+++.+. ...+|..  ++|.|++||||||+++.  ++..+
T Consensus        27 ~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           27 GFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             THHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3444444 5677776  99999999999999999  44544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.43  E-value=0.00076  Score=66.22  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=26.4

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +++.|..+.+|..  ++|.|++||||||+++.|+.
T Consensus       451 L~~vsl~I~~Ge~--v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          451 LNKTQLRLKRARR--YGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHH
T ss_pred             EecceEEEcCCCE--EEEECCCCCCHHHHHHHHhC
Confidence            3444555666665  99999999999999999984

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.42  E-value=0.0017  Score=56.62  Aligned_cols=31  Identities=19%  Similarity=0.059  Sum_probs=26.7

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...+|..  ++|.|++||||||+++.|+.....
T Consensus        67 ~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           67 TCGIGQR--IGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEETTCE--EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             eecCCCE--EEEECCCCCCHHHHHHHHhcCCCC
Confidence            4666766  999999999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.41  E-value=0.0021  Score=52.41  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|..  ++|.|++||||||++..++..+
T Consensus        20 l~~G~~--~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           20 IPERNV--VLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             EETTCE--EEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHHHHH
Confidence            555665  9999999999999988887654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.41  E-value=0.0016  Score=56.00  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=24.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +.|.|++|+|||++++.+++.++..+
T Consensus        49 vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            99999999999999999999988654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.40  E-value=0.0017  Score=58.18  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ...+|++.|++||||||++..|+.++...
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            35579999999999999999999987643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.40  E-value=0.0018  Score=51.21  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|++||||||+.+.|...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4999999999999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.39  E-value=0.0038  Score=54.21  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+.|.||+|+||||+++.+++.+
T Consensus        46 ~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           46 NALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CEEECBCTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999999988

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0016  Score=60.95  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=24.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.||+||||||+.+.|+..+.
T Consensus       100 ~~~Gei--~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          100 PRPGQV--LGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             CCTTSE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence            455665  99999999999999999998653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.38  E-value=0.0018  Score=57.20  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      -|.|.|++|+|||++++.++..++..++..
T Consensus       150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          150 GLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            399999999999999999999998876543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.38  E-value=0.0018  Score=58.53  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=22.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.||+|+|||++|+.+|+.++
T Consensus        66 iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           66 VLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCcCCHHHHHHHHHHHhC
Confidence            99999999999999999999998

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.37  E-value=0.0042  Score=54.12  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+.|.|++|+||||+++.+++.+
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.0023  Score=51.41  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=23.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.|+|.|.+|+||||++..|+..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45699999999999999999998864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.37  E-value=0.0016  Score=55.52  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +.|.|++|+||||+++.+++.++..++
T Consensus        41 vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           41 LLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            899999999999999999999987654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.37  E-value=0.0006  Score=69.42  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=31.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|..+.+|..  ++|.|++||||||++++|.+.+.
T Consensus       432 ~vL~~isl~i~~G~~--vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          432 PILRGMNLRVNAGQT--VALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             CSEEEEEEEECTTCE--EEEEECSSSCHHHHHHHHTTSSC
T ss_pred             ceeeceEEeecCCcE--EEEEecCCCcHHHHHHHhccccc
Confidence            356667777788877  99999999999999999988765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.36  E-value=0.0022  Score=55.97  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.++|.|++|+||||+++.+++.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHh
Confidence            4599999999999999999999884

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.36  E-value=0.0012  Score=60.85  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+|..  ++|.|++||||||+++.|+..+
T Consensus        23 ~~Gei--~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTI--LGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCE--EEEECCCCCcHHHHHHHHhcCC
Confidence            44444  9999999999999999998754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.35  E-value=0.0012  Score=60.67  Aligned_cols=28  Identities=14%  Similarity=0.217  Sum_probs=23.6

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..|..  |+|.|++||||||+++.|...+.
T Consensus       258 ~~g~~--i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          258 EHKFS--AIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HTTCC--EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             hCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            34444  99999999999999999988764

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.34  E-value=0.042  Score=46.84  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      |+|.||   ||+|+.+.|-..+...+
T Consensus       148 vVl~GP---~k~~l~~~L~~~~P~~F  170 (308)
T 3kfv_A          148 VVILGP---VADIAMQKLTAEMPDQF  170 (308)
T ss_dssp             EEEEST---THHHHHHHHHHHCTTTE
T ss_pred             EEEeCc---cHHHHHHHHHHhCcccc
Confidence            899999   79999999988877654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.34  E-value=0.0019  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |.|.|++||||||+|+.|+.. +.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCC
Confidence            889999999999999999876 543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.33  E-value=0.0057  Score=54.70  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ..+|+|.|++||||||++..|+..+...
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4469999999999999999999998643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.31  E-value=0.00067  Score=69.09  Aligned_cols=49  Identities=18%  Similarity=0.197  Sum_probs=38.2

Q ss_pred             HHHHHHhhhcc--ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         33 EELLNIYSRIN--ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        33 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++.-.|+..+  .++++.|..+.+|..  |+|.|++||||||++++|.+.+.
T Consensus      1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A         1080 KNVRFAYPERPEIEILKGLSFSVEPGQT--LALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp             EEEEECCTTSCSSCSEEEEEEEECTTCE--EEEECSTTSSTTSHHHHHTTSSC
T ss_pred             EEEEEeCCCCCCCccccceeEEECCCCE--EEEECCCCChHHHHHHHHhcCcc
Confidence            33444565433  367778888889888  99999999999999999988664

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.31  E-value=0.003  Score=53.62  Aligned_cols=26  Identities=31%  Similarity=0.622  Sum_probs=23.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +-+.|.|++|+||||+++.+++.+..
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~~   72 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELFG   72 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence            34999999999999999999998754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.30  E-value=0.0012  Score=62.69  Aligned_cols=49  Identities=20%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             ccCChHHHHHHHHHhhh--ccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         25 QYSSLPEVEELLNIYSR--INETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        25 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      ....+|+-..+...+..  ....+++.|..+.+|..  ++|.||+||||||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~i~~Ge~--~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           11 SSGLVPRGSHMDKIIVKGARAHNLKNIDVEIPRGKL--VVLTGLSGSGKSSLA   61 (670)
T ss_dssp             -----------CEEEEEEECSTTCCSEEEEEETTSE--EEEECSTTSSHHHHH
T ss_pred             ccCcccCCCCcceEEEcCCCccceeccEEEECCCCE--EEEECCCCCCHHHHh
Confidence            34556666666544422  23467788888888887  999999999999996

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.30  E-value=0.0012  Score=49.73  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |.|.|++|+|||++|+.+++..+
T Consensus        30 vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCCTTS
T ss_pred             EEEECCCCccHHHHHHHHHHhCC
Confidence            89999999999999999988765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.29  E-value=0.0029  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.|++||||||++..++..+
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999997766655

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.28  E-value=0.0042  Score=51.51  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |.|.|++|+|||++++.+++.+.
T Consensus        32 vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           32 VLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTST
T ss_pred             EEEECCCCCcHHHHHHHHHHhcC
Confidence            89999999999999999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.28  E-value=0.0022  Score=54.78  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++|.|++||||||+++.|. .+
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            359999999999999999998 43

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.27  E-value=0.0021  Score=57.33  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +|+|.|++||||||+.+.|...+
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            59999999999999999998743

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.26  E-value=0.002  Score=65.39  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|..+.+|..  ++|.|++||||||+++.|...+.
T Consensus      1047 ~~l~~vsl~i~~Ge~--v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKGQT--LALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             CSBSSCCEEECSSSE--EEEECSSSTTHHHHHHHHTTSSC
T ss_pred             eeecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcC
Confidence            467888888899887  99999999999999999988654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.26  E-value=0.0021  Score=57.93  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh-hcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL-KASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~-~~~~~   87 (259)
                      -|.|.||+|+|||++++.++..+ +..++
T Consensus       169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~  197 (444)
T 2zan_A          169 GILLFGPPGTGKSYLAKAVATEANNSTFF  197 (444)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence            39999999999999999999998 55544

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.23  E-value=0.0034  Score=53.08  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      -+.|.||+|+||||+++.+++.+.
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhc
Confidence            399999999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.23  E-value=0.0024  Score=48.82  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|++|+||||+.+.|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999999975

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.22  E-value=0.0023  Score=55.73  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=24.6

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+.+|..  +.|.|++||||||++..++...
T Consensus       127 gi~~G~i--~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAI--TEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEE--EEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeE--EEEECCCCCCHHHHHHHHHHHh
Confidence            3455555  9999999999999999999876

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.22  E-value=0.0023  Score=55.96  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +++|.|++||||||+++.|+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            49999999999999999998644

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.21  E-value=0.0007  Score=66.47  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|.....|..  ++|.|++||||||+++.|+..+.
T Consensus       688 iL~dVSl~I~~Gei--vaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          688 QITDINFQCSLSSR--IAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             SEEEEEEEEETTCE--EEECSCCCHHHHHHHHHHTTSSC
T ss_pred             eeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            34555666777776  99999999999999999987543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.21  E-value=0.0028  Score=48.20  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|.|++||||||+...|.-.+.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            589999999999999999986653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.21  E-value=0.0079  Score=54.98  Aligned_cols=29  Identities=34%  Similarity=0.519  Sum_probs=23.9

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ....+|+|.|++||||||++..|+.++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34557999999999999999999988753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.20  E-value=0.0031  Score=56.57  Aligned_cols=28  Identities=29%  Similarity=0.615  Sum_probs=24.2

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+.+|+|.|++|+||||++..|+.++.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3345699999999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.17  E-value=0.0072  Score=51.44  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+|++.|++|+||||++..|+..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            446999999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.15  E-value=0.0032  Score=49.27  Aligned_cols=24  Identities=21%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |+|.|++|+||||++..|.++ |..
T Consensus        19 vli~G~SGaGKStlal~L~~r-G~~   42 (181)
T 3tqf_A           19 VLITGEANIGKSELSLALIDR-GHQ   42 (181)
T ss_dssp             EEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred             EEEEcCCCCCHHHHHHHHHHc-CCe
Confidence            999999999999999999884 444

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.14  E-value=0.0022  Score=54.70  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++|.|++||||||+.+.|+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            359999999999999999997643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.14  E-value=0.0037  Score=54.19  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=23.5

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|+|.|++|+||||+++.|+..+.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            355699999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.13  E-value=0.0031  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|++.|.+|+||||+++.|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999998753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.11  E-value=0.0038  Score=50.20  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.|+|.|.+|+||||++..|+..+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45699999999999999999998753

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.10  E-value=0.0021  Score=55.36  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |.|.|++|+|||++++.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            99999999999999999999886

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.09  E-value=0.0034  Score=53.68  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.|++|+|||+++..++..+.
T Consensus       155 lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          155 LYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999877

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.08  E-value=0.0013  Score=66.78  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.|++||||||+++.|...+.
T Consensus       405 vL~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQT--VALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             SEEEEEEEECTTCE--EEEECCSSSSHHHHHHHTTTSSC
T ss_pred             ceecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCC
Confidence            55666667777777  99999999999999999987654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.07  E-value=0.0068  Score=52.28  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=24.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .+.|.|++|+||||+++.+++.+....
T Consensus        26 a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           26 ALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             eEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            499999999999999999999987643

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.06  E-value=0.0044  Score=52.51  Aligned_cols=25  Identities=24%  Similarity=0.530  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.|.|++|+||||+++.+++.+..
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~~   68 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELLG   68 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcC
Confidence            3999999999999999999998743

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.06  E-value=0.00064  Score=55.72  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++|.||+||||||+++.|+-.+.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            378999999999999999988765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.06  E-value=0.0018  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|+|.|++||||||+.+.|..
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3499999999999999998864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0085  Score=46.67  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+.|+|.|++|+||||+++.|...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            445999999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.05  E-value=0.0017  Score=55.66  Aligned_cols=28  Identities=32%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|..  ++|.|++|+||||+++.|....
T Consensus       170 ~~~G~~--~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          170 HFQDKT--TVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             GGTTSE--EEEEESHHHHHHHHHHHHCC--
T ss_pred             hcCCCE--EEEECCCCCCHHHHHHHhcccc
Confidence            445554  9999999999999999997543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.03  E-value=0.00094  Score=59.28  Aligned_cols=32  Identities=22%  Similarity=0.150  Sum_probs=25.7

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+..+.+|   +++|.|++||||||+.+.|.-.++
T Consensus        54 v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           54 LELELGGG---FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEEECCSS---EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             EEEecCCC---cEEEECCCCCCHHHHHHHHHHHhC
Confidence            34445555   499999999999999999977765

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.02  E-value=0.0021  Score=60.22  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .|.|+|.|++||||||+++.|+..+
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCC
Confidence            4559999999999999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.00  E-value=0.0019  Score=62.54  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      .+-+++++..+.++++  ++|+|++|||||||+
T Consensus        23 ~hNLkni~v~iP~~~l--~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           23 QHNLKDISVKVPRDAL--VVFTGVSGSGKSSLA   53 (842)
T ss_dssp             STTCCSEEEEEESSSE--EEEESSTTSSHHHHH
T ss_pred             ccCCCCeeEEecCCCE--EEEECCCCCCHHHHH
Confidence            4456777777777776  999999999999998

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.00  E-value=0.0029  Score=49.27  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+.+.+..
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999999875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.99  E-value=0.0033  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.|++|+|||++++.++..++..++
T Consensus       241 vLL~GppGtGKT~lAraia~~~~~~fv  267 (489)
T 3hu3_A          241 ILLYGPPGTGKTLIARAVANETGAFFF  267 (489)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence            999999999999999999999887655

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.96  E-value=0.0038  Score=48.47  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +.|+|.|++|+||||+.+.|..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3499999999999999999976

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.96  E-value=0.004  Score=55.96  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.|++|+||||+++.++..+.
T Consensus       133 lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          133 LFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999874

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.96  E-value=0.002  Score=63.05  Aligned_cols=30  Identities=23%  Similarity=0.250  Sum_probs=23.1

Q ss_pred             CCCcccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         49 DSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        49 ~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+....+|.+  ++|+||+||||||+.+.++.
T Consensus       666 vsl~~~~g~i--~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          666 TDLSEDSERV--MIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEECTTSCCE--EEEESCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCeE--EEEECCCCCchHHHHHHHHH
Confidence            3333444554  99999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.95  E-value=0.0054  Score=48.95  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+.|+|.|++|+||||++..|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34569999999999999999998753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.95  E-value=0.0048  Score=52.69  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ++.+.||+|+||||+++.+++.++..++.
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~   78 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDVNADMMF   78 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence            47788889999999999999999876653

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.94  E-value=0.0049  Score=49.34  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.++|++|||||+.+..+...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            567999999999999999886544

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.93  E-value=0.0045  Score=46.84  Aligned_cols=22  Identities=32%  Similarity=0.299  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+++.|...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3999999999999999998763

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.92  E-value=0.008  Score=54.91  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |.|.|++|+|||++|+.|+..++.
T Consensus        44 VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           44 VFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             EEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             eEeecCchHHHHHHHHHHHHHHhh
Confidence            999999999999999999998753

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.91  E-value=0.0047  Score=53.54  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.|.|++|+||||+++.+++.++..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            38999999999999999999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.91  E-value=0.0027  Score=62.08  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      .+-+++++.++.++++  ++|+|++|||||+||
T Consensus        11 ~hNLkni~~~ip~~~l--~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           11 VHNLKNITVRIPKNRL--VVITGVSGSGKSSLA   41 (916)
T ss_dssp             STTCCSBCCEEETTSE--EEEEESTTSSSHHHH
T ss_pred             ccccCcceeccCCCcE--EEEECCCCCcHHHHH
Confidence            4457777778888777  999999999999998

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.91  E-value=0.0046  Score=46.43  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |++.|.+|+||||+++.|...
T Consensus         6 i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.89  E-value=0.0044  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+.+.|...
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3999999999999999999754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.85  E-value=0.0066  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.85  E-value=0.0073  Score=46.21  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44599999999999999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.85  E-value=0.005  Score=46.35  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+.+.|..
T Consensus         6 i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999988875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.85  E-value=0.0045  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|.+|+||||+.+.+..
T Consensus        25 ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            399999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.83  E-value=0.0071  Score=46.97  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+.|+|.|.+|+||||+++.|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            456999999999999999988654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.82  E-value=0.0053  Score=46.28  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|.+|+||||+.+.|...
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            999999999999999998753

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.80  E-value=0.0031  Score=60.91  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++|+||+||||||+.+.++..
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            35999999999999999999875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.78  E-value=0.0063  Score=50.12  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++++.|..|+||||++..|+..+.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999999998875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.77  E-value=0.0076  Score=54.08  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.+|++.|+.|+||||++..||.++...
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999988654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.76  E-value=0.0028  Score=61.97  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      .+-+++++..+.++++  |+|+|++||||||||
T Consensus        31 ~hNLkni~v~iP~~~l--vv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           31 AHNLKNIDVEIPRGKL--VVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSSCCSEEEEEETTSE--EEEEESTTSSHHHHH
T ss_pred             cccCCceeeeccCCcE--EEEECCCCCCHHHHH
Confidence            4466777777777776  999999999999997

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.75  E-value=0.0048  Score=57.70  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++|.|++||||||+++.|+..+..
T Consensus        63 vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           63 VLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             EEEEeCCCCCHHHHHHHHhccCCc
Confidence            999999999999999999998753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.73  E-value=0.017  Score=55.37  Aligned_cols=26  Identities=31%  Similarity=0.570  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +.|.||+|+|||++|+.|++.++..+
T Consensus       491 ~ll~G~~GtGKT~la~~la~~l~~~~  516 (758)
T 1r6b_X          491 FLFAGPTGVGKTEVTVQLSKALGIEL  516 (758)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCE
Confidence            89999999999999999999997554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.72  E-value=0.0061  Score=46.08  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|.+|+||||+.+.|...
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            999999999999999988653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.71  E-value=0.013  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..|.|+|.|.+|+||||+.+.|...
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            3567999999999999999999653

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.71  E-value=0.023  Score=48.18  Aligned_cols=65  Identities=6%  Similarity=0.065  Sum_probs=37.1

Q ss_pred             EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ++||+..| .+++.+|++.|+..+. +.    ...-..+.+..|..+.   .++|.++  ++++++++|.++|...
T Consensus       212 i~IFI~PpS~e~L~~r~~~r~~e~~-~~----~~~r~~k~e~e~~~~f---D~vIvNd--dle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          212 VAVFIKPKSVDSVMEMNRRMTEEQA-KK----TYERAIKMEQEFGEYF---TGVVQGD--TIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             EEEEECCSCHHHHHHTCTTSCTTHH-HH----HHHHHHHHHHHHTTTC---SEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHhCCCchhH-HH----HHHHHHHHHHhhhhhC---CEEEECc--CHHHHHHHHHHHHHHh
Confidence            57888875 6677777766654321 11    1111223333343322   2555544  3899999999999754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.70  E-value=0.0031  Score=61.78  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+++|+||+||||||+.+.++-
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999853

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.70  E-value=0.0062  Score=46.59  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            499999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.69  E-value=0.0063  Score=46.07  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         6 i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHh
Confidence            99999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.69  E-value=0.0063  Score=46.65  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|++|+||||+.+.|...
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999988753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.68  E-value=0.0057  Score=53.60  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.+|.|++||||||+...|.-.+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999988553

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.68  E-value=0.0048  Score=52.55  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+.+.|..
T Consensus        21 I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.68  E-value=0.0067  Score=52.97  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++.|.|++||||||++..++..+.
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            499999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.68  E-value=0.0065  Score=45.85  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         6 i~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999999875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.68  E-value=0.0074  Score=49.18  Aligned_cols=25  Identities=16%  Similarity=0.096  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +++++|++|+||||.+-.++.++..
T Consensus        14 i~litG~mGsGKTT~ll~~~~r~~~   38 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHRLEY   38 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHh
Confidence            5999999999999999988887753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.68  E-value=0.0065  Score=46.02  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|.+|+||||+.+.|...
T Consensus         9 i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.68  E-value=0.0065  Score=46.08  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            399999999999999998875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.66  E-value=0.0078  Score=48.12  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+.+|.|++||||||+...|.-.++.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            35999999999999999999877765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.65  E-value=0.0063  Score=46.12  Aligned_cols=20  Identities=30%  Similarity=0.378  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         6 i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999998874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.65  E-value=0.0057  Score=55.40  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.|.|++|+|||++++.|++.+..
T Consensus       204 ~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          204 PVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHh
Confidence            889999999999999999999854

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.64  E-value=0.002  Score=51.06  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+.+.+..
T Consensus        28 i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           28 LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEETTSSHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999998853

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.63  E-value=0.015  Score=48.84  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHC
Confidence            45699999999999999999964

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.63  E-value=0.0064  Score=46.36  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            399999999999999998864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.62  E-value=0.014  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |.|.|++|+|||++|+.+++...
T Consensus        28 vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           28 VLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHSS
T ss_pred             EEEECCCCchHHHHHHHHHHhCc
Confidence            89999999999999999999653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.62  E-value=0.0061  Score=46.08  Aligned_cols=20  Identities=25%  Similarity=0.431  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~   79 (259)
                      -|+|.|.+|+||||+.+.|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            39999999999999998885

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.62  E-value=0.0066  Score=46.05  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999999998863

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.61  E-value=0.0069  Score=46.37  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .-|+|.|.+|+||||+.+.|...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            34999999999999999998764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.61  E-value=0.008  Score=51.45  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++++|.|+.|+||||+++.+++.++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            359999999999999999999987543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.57  E-value=0.0076  Score=45.56  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            399999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.57  E-value=0.0074  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+++.|...
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4999999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.55  E-value=0.0096  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.|...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.53  E-value=0.0083  Score=55.12  Aligned_cols=30  Identities=17%  Similarity=0.078  Sum_probs=25.4

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  ++|.|++||||||+++.++....
T Consensus       277 ~i~~G~i--~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          277 GFFKDSI--ILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SEESSCE--EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            3566665  99999999999999999998654

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=95.53  E-value=0.31  Score=41.93  Aligned_cols=70  Identities=11%  Similarity=0.256  Sum_probs=37.7

Q ss_pred             EEEEEecC-HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        178 LVIYLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       178 lvI~L~a~-~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      +.||+..| .+++.+|+..||..  .+..+...++-.+.....|....  + ++|.++  ++++.++++.++|..+..
T Consensus       253 i~IFI~PPS~eeLe~RL~~RGt~--~~~rl~~al~~ae~E~~~~~~~F--D-yvIVND--dLe~A~~~L~~iI~~~~~  323 (337)
T 4dey_A          253 IVVYVKISSPKVLQRLIKSRGKS--QAKHLNVQMVAADKLAQCPPELF--D-VILDEN--QLEDACEHLADYLEAYWK  323 (337)
T ss_dssp             EEEEECCSCHHHHHHHHHTTCHH--HHTTHHHHHHHHHHHHHSCGGGC--S-EEECCS--SHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHhhCcccC--C-EEEECC--CHHHHHHHHHHHHHHHHh
Confidence            46777765 79999999999852  11111111111111111111111  2 444443  389999999999977643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.52  E-value=0.0078  Score=46.48  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            399999999999999999975

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.52  E-value=0.025  Score=54.29  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.|.||+|+|||++|+.|++.+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            399999999999999999999973

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.51  E-value=0.0069  Score=50.55  Aligned_cols=22  Identities=14%  Similarity=0.205  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|++||||||+.+.|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999999754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.51  E-value=0.008  Score=46.55  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.50  E-value=0.0083  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|.+|+||||+.+.|..
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999999864

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.48  E-value=0.009  Score=51.41  Aligned_cols=26  Identities=15%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++.|.|++|+||||++..++...+..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~~G~~  150 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEALGGK  150 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence            48999999999999999999874433

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.47  E-value=0.0086  Score=45.14  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|.+|+||||+.+.+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.47  E-value=0.014  Score=51.09  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .++|+|.|++||||||+.+.|...
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            566999999999999999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.47  E-value=0.0085  Score=45.77  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            499999999999999998874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.47  E-value=0.0087  Score=51.11  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++|.|+.|+||||+++.+++..+
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEECCCcCCHHHHHHHHHHHcC
Confidence            499999999999999999998875

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.46  E-value=0.0088  Score=52.08  Aligned_cols=28  Identities=14%  Similarity=0.153  Sum_probs=23.0

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|..  +.|.|++||||||++..++...
T Consensus        58 l~~G~i--v~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           58 LPRGRV--IEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             EETTSE--EEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCeE--EEEECCCCCCHHHHHHHHHHHH
Confidence            344444  9999999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.46  E-value=0.0085  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .-|+|.|.+|+||||+.+.|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            34999999999999999988763

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.45  E-value=0.0075  Score=46.15  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +-|+|.|.+|+||||+++.|..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3499999999999999988853

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.45  E-value=0.0089  Score=46.26  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999998865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.43  E-value=0.0084  Score=51.01  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|++|+||||+.+.|...
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4999999999999999999754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.42  E-value=0.009  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .-|+|.|.+|+||||+.+.|...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            34999999999999999998754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.42  E-value=0.0062  Score=54.40  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|++||||||+++.|...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            799999999999999999764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.41  E-value=0.0091  Score=45.94  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+++.|...
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4999999999999999998753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.40  E-value=0.0091  Score=46.28  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.|...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3999999999999999998763

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.37  E-value=0.0094  Score=46.00  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+++.|...
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.37  E-value=0.0095  Score=49.47  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      +.|+|.|.+||||||+.+.|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999999654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.36  E-value=0.009  Score=45.69  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            399999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.35  E-value=0.0086  Score=48.81  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +.|+|.|.+|+||||+++.|..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHcC
Confidence            4599999999999999998865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.0099  Score=45.55  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            499999999999999999865

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.34  E-value=0.014  Score=50.78  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.6

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|.|+|.|.+||||||+.+.|..
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhC
Confidence            356799999999999999999976

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.33  E-value=0.011  Score=50.56  Aligned_cols=29  Identities=17%  Similarity=0.295  Sum_probs=24.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.|++|+||||++..++....
T Consensus        65 l~~G~l--~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           65 YKRRNF--VLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             BCTTCE--EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            455555  99999999999999999997654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.32  E-value=0.0089  Score=57.62  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=26.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.||+|||||.+|+.+|..++..++..
T Consensus       514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          514 VLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             CEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             EEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            89999999999999999999999887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.31  E-value=0.01  Score=46.26  Aligned_cols=22  Identities=18%  Similarity=0.037  Sum_probs=19.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+++.+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3499999999999999987765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.30  E-value=0.01  Score=45.49  Aligned_cols=21  Identities=33%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            499999999999999998875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.29  E-value=0.0088  Score=57.46  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +++|+||+||||||+.+.++...
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhhh
Confidence            59999999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.27  E-value=0.011  Score=45.56  Aligned_cols=20  Identities=20%  Similarity=0.160  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         8 i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999998864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.27  E-value=0.011  Score=45.61  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+.+.|...
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.27  E-value=0.0089  Score=47.77  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+.|+|.|.+|+||||+.+.|...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3456999999999999999988654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.27  E-value=0.0028  Score=62.00  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.6

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTV   78 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l   78 (259)
                      .+++.+..+..|..  ++|.|++||||||+++.|
T Consensus       639 ~Lk~Vsl~I~~Gei--v~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          639 NLKNVSVKIPLGTF--VAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SCCSEEEEEESSSE--EECCBCTTSSHHHHHTTT
T ss_pred             ccccceEEEcCCCE--EEEEcCCCCCHHHHHHHH
Confidence            35566667777776  999999999999999985

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.25  E-value=0.011  Score=46.50  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .-|+|.|.+|+||||+.+.|...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34999999999999999988753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.25  E-value=0.014  Score=44.78  Aligned_cols=21  Identities=19%  Similarity=0.083  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999988875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.25  E-value=0.011  Score=46.27  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.|...
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4999999999999999998753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.23  E-value=0.0078  Score=51.65  Aligned_cols=23  Identities=22%  Similarity=0.370  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.+|.|++||||||+...|.-.+
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             cEEEECCCCCcHHHHHHHHHHHh
Confidence            59999999999999999998544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.23  E-value=0.013  Score=52.81  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=24.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+|..  ++|.|++|+||||++..++..+.
T Consensus       200 l~~G~l--iiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          200 FQRSDL--IIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             BCTTCE--EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCE--EEEECCCCCCHHHHHHHHHHHHH
Confidence            455555  99999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.22  E-value=0.0098  Score=46.12  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..|+|.|.+|+||||+.+.|...
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            34999999999999999988653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.22  E-value=0.011  Score=45.37  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|.+|+||||+.+.|..
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            499999999999999998874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.21  E-value=0.012  Score=47.75  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+|..  +.|.|++|+||||++..++..
T Consensus        27 l~~G~l--~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           27 FPEGTT--VLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EETTCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeE--EEEEeCCCCCHHHHHHHHHHH
Confidence            455555  999999999999999887653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.20  E-value=0.011  Score=45.86  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+.+.|..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3499999999999999999865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.19  E-value=0.0098  Score=46.21  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      -|+|.|.+|+||||+.+.|...+.
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            499999999999999988876544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.18  E-value=0.012  Score=46.44  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3499999999999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.18  E-value=0.012  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            3499999999999999999875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.17  E-value=0.0021  Score=62.23  Aligned_cols=34  Identities=18%  Similarity=0.065  Sum_probs=27.0

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHHHH-HHHH
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQT-VAKK   81 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~-l~~~   81 (259)
                      +++.+..+..|..  ++|.|++||||||+++. |...
T Consensus       513 L~~vsl~i~~Gei--v~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          513 LDNLDVRFPLGVM--TSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             EEEEEEEEESSSE--EEEECCTTSSHHHHCCCCCHHH
T ss_pred             cccceEEEcCCCE--EEEEcCCCcCHHHHHHHHHHHH
Confidence            4555667777776  99999999999999996 5543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.15  E-value=0.012  Score=46.32  Aligned_cols=22  Identities=23%  Similarity=0.367  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+.+.|...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4999999999999999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.15  E-value=0.012  Score=45.94  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            499999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.15  E-value=0.012  Score=45.86  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .-|+|.|.+|+||||+++.|...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            34999999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.13  E-value=0.01  Score=45.43  Aligned_cols=22  Identities=18%  Similarity=0.057  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.+...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3999999999999999998763

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.13  E-value=0.012  Score=46.03  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.|...
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998763

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.12  E-value=0.016  Score=51.19  Aligned_cols=30  Identities=13%  Similarity=0.056  Sum_probs=25.6

Q ss_pred             cccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         52 VGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        52 ~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...+|..  ++|.|++|+||||+++.|++...
T Consensus       170 pi~rGQr--~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          170 PIGRGQR--GLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CCBTTCE--EEEECCSSSSHHHHHHHHHHHHH
T ss_pred             eecCCcE--EEEecCCCCChhHHHHHHHHHHh
Confidence            3555665  99999999999999999999864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.12  E-value=0.011  Score=51.01  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+|.||+||||||+..++.--+.
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~l~   48 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3589999999999999998855443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.12  E-value=0.014  Score=46.34  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      +.|+|.|.+|+||||+...|...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            34999999999999999998764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.12  E-value=0.013  Score=52.29  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      .+++|.|++||||||+.+.+.-.++.
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            35999999999999999999876654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.11  E-value=0.008  Score=46.29  Aligned_cols=21  Identities=33%  Similarity=0.475  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~   79 (259)
                      ..|+|.|++|+||||+.+.+.
T Consensus        19 ~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            349999999999999998875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.10  E-value=0.011  Score=49.47  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|.+||||||+.+.|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            499999999999999999975

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.10  E-value=0.013  Score=45.59  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+.+.|..
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3499999999999999998865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.09  E-value=0.015  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|+|.|++|+||||+.+.|..
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3599999999999999999987

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.07  E-value=0.013  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            499999999999999998875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.07  E-value=0.013  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+++.|...
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4999999999999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.06  E-value=0.013  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            499999999999999999875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.05  E-value=0.013  Score=45.99  Aligned_cols=22  Identities=32%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+++.|..
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4499999999999999999865

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.04  E-value=0.13  Score=46.39  Aligned_cols=24  Identities=8%  Similarity=-0.024  Sum_probs=18.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...|+|.||+|+|   +.+.|.+....
T Consensus       224 ~r~iVlsGPsG~G---l~~~Ll~~~p~  247 (468)
T 3shw_A          224 LRPVTIFGPIADV---AREKLAREEPD  247 (468)
T ss_dssp             CCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred             CCEEEEECCCHHH---HHHHHHHhCCC
Confidence            3459999999999   77777776554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.04  E-value=0.011  Score=56.69  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.|.|++|+||||+++.|++.+.
T Consensus       204 vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          204 PVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999999984

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.03  E-value=0.01  Score=58.06  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=23.2

Q ss_pred             CCCCCCcccCCCCCeEEEEcCCCCcHHHHH
Q psy16563         46 NDQDSGVGDDRKYPLIVFEGLDGCGKSHTS   75 (259)
Q Consensus        46 ~~~~~~~~~~~~~~ii~~~g~~g~gkst~~   75 (259)
                      +++.+..+..|.+  ++|.|++||||||++
T Consensus       600 Lk~Vsl~I~~Gei--v~I~G~SGSGKSTLl  627 (916)
T 3pih_A          600 LKNIDVEIPLGVF--VCVTGVSGSGKSSLV  627 (916)
T ss_dssp             CCSEEEEEESSSE--EEEECSTTSSHHHHH
T ss_pred             ccccceEEcCCcE--EEEEccCCCChhhhH
Confidence            5556666777776  999999999999997

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.03  E-value=0.014  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            4999999999999999888753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.01  E-value=0.012  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|+|.|.+|+||||+.+.+..
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3499999999999999998864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.01  E-value=0.017  Score=45.83  Aligned_cols=25  Identities=24%  Similarity=0.092  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|+.||||||.+-.++.++.
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~   33 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAK   33 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3599999999999999999988874

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.01  E-value=0.013  Score=51.25  Aligned_cols=21  Identities=19%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +.+|.|++||||||+.+.+.-
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            599999999999999999975

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.00  E-value=0.014  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999998865

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.00  E-value=0.0082  Score=59.50  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=18.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTV   78 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l   78 (259)
                      .+++|+||+||||||+.+.+
T Consensus       790 ~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHH
Confidence            35999999999999999998

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.00  E-value=0.014  Score=45.26  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+.+.|...
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.99  E-value=0.014  Score=46.41  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+++.|...
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999998763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.98  E-value=0.013  Score=45.97  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999998864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.96  E-value=0.014  Score=45.31  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .|+|.|.+|+||||+.+.|..
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            399999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.96  E-value=0.014  Score=46.15  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            499999999999999998875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.95  E-value=0.015  Score=45.39  Aligned_cols=22  Identities=27%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.+...
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4999999999999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.92  E-value=0.011  Score=46.58  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             CeEEEEcCCCCcHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~   79 (259)
                      ..|+|.|.+|+||||+.+.|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            459999999999999998874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.92  E-value=0.016  Score=49.81  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|.  ++.|.|++||||||++..++...
T Consensus       104 l~~G~--i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRT--MTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTS--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCc--EEEEECCCCCCHhHHHHHHHHHH
Confidence            44444  49999999999999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.90  E-value=0.045  Score=47.56  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+.|+|.|++|+||||+.+.|...
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.90  E-value=0.014  Score=45.91  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            499999999999999998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.90  E-value=0.015  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .-|+|.|.+|+||||+...|..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3499999999999999998874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.89  E-value=0.014  Score=50.68  Aligned_cols=27  Identities=19%  Similarity=0.080  Sum_probs=22.8

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+|.  ++.|.|++||||||++..++..
T Consensus       119 l~~G~--i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMA--ITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSE--EEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCe--EEEEECCCCCCHHHHHHHHHHH
Confidence            44444  4999999999999999999986

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.88  E-value=0.014  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|+|.|.+|+||||+.+.|..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            3499999999999999999874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.86  E-value=0.012  Score=50.49  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        56 ~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |..  |+|.|++|+||||++..|.++ |..
T Consensus       144 g~~--vl~~G~sG~GKSt~a~~l~~~-g~~  170 (314)
T 1ko7_A          144 GVG--VLITGDSGIGKSETALELIKR-GHR  170 (314)
T ss_dssp             TEE--EEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred             CEE--EEEEeCCCCCHHHHHHHHHhc-CCc
Confidence            445  999999999999999999885 443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.86  E-value=0.016  Score=50.62  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++.|.|++|+||||++..++...
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.84  E-value=0.014  Score=45.54  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.82  E-value=0.028  Score=53.83  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++|.|++|+||||+++.|++.+..
T Consensus       210 vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          210 PLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHh
Confidence            899999999999999999998853

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.82  E-value=0.017  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999998875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.82  E-value=0.017  Score=45.33  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.+|+||||+.+.+...
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3999999999999999988753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.82  E-value=0.014  Score=45.04  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|+|.|.+|+||||+.+.|..
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4599999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1tmka_	214	c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (S	2e-13
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	3e-11
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	7e-10
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	2e-09
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-09
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	1e-08
d1e2ka_	329	c.37.1.1 (A:) Thymidine kinase {Herpes simplex vir	3e-08
d1osna_	331	c.37.1.1 (A:) Thymidine kinase {Varicella-zoster v	3e-08
d1p6xa_	333	c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus	5e-08
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	3e-07
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	6e-07
d1p5zb_	241	c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sa	9e-07
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	2e-06
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	4e-06
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	6e-06
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	9e-06
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	1e-05
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	2e-05
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	3e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	4e-05
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	1e-04
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	2e-04
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	2e-04
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	2e-04
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	3e-04
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	4e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	6e-04
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	7e-04
d2ocpa1	241	c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (	0.001
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	0.002
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.004

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 214

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 18/204 (8%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKST--PPSS--------IMSLREKFDAHDSLLR 109
           LI+ EGLD  GK+     + KKL+ + K    P  S             + F   D  + 
Sbjct: 5   LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 64

Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
             + +    I  +  K  L+ + +VMDR+ +S  AY  A             + D     
Sbjct: 65  LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAK-------GTNGMDLDWCLQP 117

Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRNMNNPEL 228
              L+KPDL ++L+  +       S   +   E  +  +K  +    L        +  +
Sbjct: 118 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 177

Query: 229 VFVDNSEKSVHESSNDIVELIHNL 252
             VD + K + E    I +++  +
Sbjct: 178 TIVDVTNKGIQEVEALIWQIVEPV 201

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 27/202 (13%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMSLREKFDAHDSLLRR 110
           ++V  G+ G G + +SQ     L+    +             +              +  
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
                   +A + I +  ++ PV +D     ++  G    L                 W 
Sbjct: 63  ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPS---------------WV 107

Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRNMNNPE 227
            + + PDL+I +  +    L R    +         + ++++          Y  +    
Sbjct: 108 LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGAT 167

Query: 228 LVFVDNSEKSVHESSNDIVELI 249
           +  V N    + ++  ++  ++
Sbjct: 168 VKIVQNRNGLLDQAVEELTNVL 189

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.1 bits (131), Expect = 7e-10
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 32/212 (15%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-------------------- 99
           LI  EG+DG GK     T+ +KL  + ++   S    L                      
Sbjct: 2   LIAIEGVDGAGKR----TLVEKLSGAFRAAGRSVAT-LAFPRYGQSVAADIAAEALHGEH 56

Query: 100 -KFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
               +    +   +                    V++DR+  S +AY  A  L +N+  K
Sbjct: 57  GDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAAR-LHENAAGK 115

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
                  I      L KPD  + L VS   A    R   +++     +  +++A+ ++  
Sbjct: 116 AAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRT 175

Query: 217 TTIYRNM---NNPELVFVDNSEKSVHESSNDI 245
             +Y  +          V  ++      +  +
Sbjct: 176 GAVYAELAAQGWGGRWLVVGADVDPGRLAATL 207

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 36/216 (16%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG--- 116
            IV EGL+G GK+    T    +  +L+      ++  RE      +   R+        
Sbjct: 4   YIVIEGLEGAGKT----TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSV 59

Query: 117 ------------------NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
                               +    IK  L     V+      ++          +    
Sbjct: 60  GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGID---- 115

Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
                  +        +PDL +YL V+  + L+R   R      E E   +  F      
Sbjct: 116 -QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQE---SFDFFNRTRA 171

Query: 219 IYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
            Y  +   +  +  +D + + +    + I   + + 
Sbjct: 172 RYLELAAQDKSIHTIDAT-QPLEAVMDAIRTTVTHW 206

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 23/202 (11%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMSLREKFDAHDSLLRR 110
           + +  G+ G GKS     V + L     +            +++     K       L  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 111 AYYSLGNYIAAQDIKQDLQ---KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
                    AA+ I ++ +   +  + +D      +  G                   + 
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG-----------LPSYVI 111

Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE 227
           +     +   L     +  + + +  +R +N   +E+ + +   F     T    +    
Sbjct: 112 TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGST 171

Query: 228 LVFVDNSEKSVHESSNDIVELI 249
           +  + N E     ++N+I+  +
Sbjct: 172 VKVIVNVEGDPSIAANEIIRSM 193

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 12/202 (5%)

Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
           R+  LIV EG+D  GKS    T ++KL  +L +    + +    +       L  +Y   
Sbjct: 1   RRGALIVLEGVDRAGKS----TQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQK 56

Query: 116 GNYIAAQDIKQDL---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
            + +    +       + + V + +   S     + +    +       +++    W K 
Sbjct: 57  KSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ 116

Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVF 230
                    L +   ++L   ++R  F  E  E   N  F+E     +  +  +      
Sbjct: 117 PDVGLPKPDLVLFLQLQLADAAKRGAFGHERYE---NGAFQERALRCFHQLMKDTTLNWK 173

Query: 231 VDNSEKSVHESSNDIVELIHNL 252
           + ++ KS+     DI  L  + 
Sbjct: 174 MVDASKSIEAVHEDIRVLSEDA 195

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Length = 329

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 37/172 (21%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKA--------------SLKSTPPS----SIMSLREKF 101
            +  +G  G GK+ T+Q +                     L ++       +     ++ 
Sbjct: 6   RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQG 65

Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-----------------VVMDRFWHSTSA 144
           +           S    +       D    P                 ++ DR   +   
Sbjct: 66  EISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALL 125

Query: 145 YGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
              A           P       +     +    ++   + E   + RL++R
Sbjct: 126 CYPAARY--LMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKR 175

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Length = 331

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 22/179 (12%), Positives = 45/179 (25%), Gaps = 49/179 (27%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI-----MSLREKFDAHDSL-------- 107
           I  +G  G GK+    T A++       TP   +     +S        D++        
Sbjct: 8   IYLDGAYGIGKT----TAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQT 63

Query: 108 -----------LRRAYYSLGNYIAAQDIKQDLQKQP-------------------VVMDR 137
                       +R      +   +       +                      ++ DR
Sbjct: 64  RRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDR 123

Query: 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
              +++     +          P     +            ++  TVS    L R+S+R
Sbjct: 124 HPIASTICFPLSRY--LVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKR 180

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 37/171 (21%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKA---------------SLKSTPPS----SIMSLREKF 101
           I  +G+ G GKS T + +A                    +L  T          + +++ 
Sbjct: 9   IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQG 68

Query: 102 DAHDSLLRRAYYSLGNYIA---------------AQDIKQDLQKQP-VVMDRFWHSTSAY 145
           +              +                     +++  Q    +V DR   + S  
Sbjct: 69  NLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVA-STV 127

Query: 146 GMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
                     D+        + +      +   ++  T++    ++RL  R
Sbjct: 128 CFPAARYLLGDMS-MCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTR 177

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 12/189 (6%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           ++  G  G GK     T A KL   L     S+    R   +    L   A      Y+ 
Sbjct: 3   VLLLGPPGAGKG----TQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAK----RYLD 54

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
           A D+        +V DR  +  +A G   +    S  +     +      +     D V+
Sbjct: 55  AGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM---LERRGTDIDAVL 111

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
              VSE + L+RL  R      ++ +    K     T         +L  VD +  ++ E
Sbjct: 112 EFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD-AVGTMDE 170

Query: 241 SSNDIVELI 249
                +  +
Sbjct: 171 VFARALRAL 179

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF--DAHDSLLRRAYYSLGN 117
           L +  G  G GKS    T  K+L A L ++       +                  +L  
Sbjct: 4   LYIITGPAGVGKS----TTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTW 59

Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
                     L  Q  V+  +           + V+                 K      
Sbjct: 60  KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQA----------------KVDDVEI 103

Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
             I L  +    L+R + RK    +E   ++  +  E   +   +    E  F + S   
Sbjct: 104 RFIILWTNREELLRRDALRK---KDEQMGERCLELVEEFESKGID----ERYFYNTSHLQ 156

Query: 238 VHESSNDIVELIHN 251
               ++ +  L  N
Sbjct: 157 PTNLNDIVKNLKTN 170

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 27/237 (11%), Positives = 57/237 (24%), Gaps = 41/237 (17%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP-----------SSIMSLREKFDAHD 105
           +   I  EG    GKS     + +  +       P                L        
Sbjct: 1   RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60

Query: 106 SLLRRAYYSLGNYIAAQD----------------------IKQDLQKQPVVMDRFWHSTS 143
           ++L+  Y     +                            K  L  +  V    +   S
Sbjct: 61  NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120

Query: 144 AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
               +  + +       D  D + +     ++ D +IYL  +    L R+  R     + 
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180

Query: 204 NELKKNAKFRELLTTIYRNMN--------NPELVFVDNSEKSVHESSNDIVELIHNL 252
             L+   K      +   +              +   +  +   +    +VE +   
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEF 237

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 30/195 (15%)

Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
             + + V  G+ G GKS     VA ++   L          L  + +             
Sbjct: 4   HDHHIYVLMGVSGSGKS----AVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLNDD 58

Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
                 Q +                  SA                          ++   
Sbjct: 59  DRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHY-----------------RDLLREGNP 101

Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL-VFVDNS 234
               IYL     +   RL  RK    +   L    +         +     E  V V + 
Sbjct: 102 NLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFE-------TLQEPGADETDVLVVDI 154

Query: 235 EKSVHESSNDIVELI 249
           ++ +       +E+I
Sbjct: 155 DQPLEGVVASTIEVI 169

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 19/192 (9%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           I+  G    GK     T A+ +            +S  +   A             + + 
Sbjct: 3   IILLGAPVAGKG----TQAQFIMEKYGIP----QISTGDMLRAAVKSGSELGKQAKDIMD 54

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
           A  +  D     +V +R        G   +         P       +  +  +  D V+
Sbjct: 55  AGKLVTDELVIALVKERIAQEDCRNGFLLD-------GFPRTIPQADAMKEAGINVDYVL 107

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN---MNNPELVFVDNSEKS 237
              V + + + R+ +          L +  +    L   Y       N +   VD   K 
Sbjct: 108 EFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVD-GTKP 166

Query: 238 VHESSNDIVELI 249
           V E   D+ +++
Sbjct: 167 VAEVRADLEKIL 178

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 23/190 (12%), Positives = 49/190 (25%), Gaps = 18/190 (9%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
           +I+  G    GKS   + +   L     +    S++                    G  I
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
             +    +      V+            A  ++ +  L      +   S+  D     L 
Sbjct: 65  GPEFRALEGAWAEGVVAMARA------GARIIIDDVFLGGAAAQERWRSFVGD--LDVLW 116

Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
           + +    A+   R + R +                    +       ++  VD + K   
Sbjct: 117 VGVRCDGAVAEGRETARGDRVAG---------MAAKQAYVVHEGVEYDVE-VDTTHKESI 166

Query: 240 ESSNDIVELI 249
           E +  I   +
Sbjct: 167 ECAWAIAAHV 176

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 21/187 (11%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----------PSSIMSLREKFDAHDSLLR 109
            ++ EG  G GK+    T     +                   + ++L E          
Sbjct: 11  TVLIEGNIGSGKT----TYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66

Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMAN---ELVKNSDLKLPDEDDDI 166
             + S       Q       K+  +M+R   S     + N          +    E+   
Sbjct: 67  MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126

Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKK-NAKFRELLTTIYRN 222
           +      ++ DL+IYL  S  +  +R+ +R       +    L++ +    + L    R 
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRP 186

Query: 223 MNNPELV 229
            +   LV
Sbjct: 187 QSCKVLV 193

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           K  ++   G  G GK     T    +         S+   LR++  +           + 
Sbjct: 5   KPNVVFVLGGPGSGKG----TQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK 60

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
           N      I         V  +   +          + +   +  + ++      KD +  
Sbjct: 61  NGEIVPSI---------VTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDT 111

Query: 177 DLVIYLTVSEAIRLQRLSRRK-----NFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
             V++    E +  QRL +R      +    E+  K+   F      +  + N  + V +
Sbjct: 112 KFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKI 171

Query: 232 DNSEKSVHESSNDIVELIHNL 252
             + + V+E  ND+  L  ++
Sbjct: 172 IPANRDVNEVYNDVENLFKSM 192

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/200 (11%), Positives = 56/200 (28%), Gaps = 29/200 (14%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           K   I+  G  G GK+    ++A+ + A L       +  L ++   +          + 
Sbjct: 4   KGINILITGTPGTGKT----SMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII 59

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
                  +   ++   V                              D   S        
Sbjct: 60  EEKDEDRLLDFMEPIMVSRGNHVV-----------------------DYHSSELFPERWF 96

Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEK 236
            +V+ L  S  +  +RL++R+    +  E  +                  + + +     
Sbjct: 97  HMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCI--CEEEARDAYEDDIVLVREND 154

Query: 237 SVHESSNDIVELIHNLPMFK 256
           ++ + +  + E+   + + K
Sbjct: 155 TLEQMAATVEEIRERVEVLK 174

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 57  KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
           +  +I   G  G GK     T  +KL         S+   LR +     S         G
Sbjct: 7   QVSVIFVLGGPGAGKG----TQCEKLVKDYSFVHLSAGDLLRAEQGRAGS-------QYG 55

Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
             I     +  +  Q + +    ++ S    AN+     D       D   S+ +D+++ 
Sbjct: 56  ELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKM-DQAISFERDIVES 114

Query: 177 DLVIYLTVSEAIRLQRLSRRKNF-----TLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
             +++    E I L+RL  R           E+  K+   F+E    +         V  
Sbjct: 115 KFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVR 174

Query: 232 DNSEKSVHESSNDIVELIHN 251
              ++SV +   D+ + I +
Sbjct: 175 VRCDRSVEDVYKDVQDAIRD 194

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 23/191 (12%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           I   G    GK      +A+ L+ +L           R         +R    S   +  
Sbjct: 9   IFLTGYMNSGKD----AIARALQVTLNQ------QGGRSVSLLLGDTVRHELSSELGFTR 58

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
                   +   V  +      +                    ++   + +D +      
Sbjct: 59  EDRHTNIQRIAFVATELTRAGAAVIAAPI-----------APYEESRKFARDAVSQAGSF 107

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
           +L              K          +   F   +   Y      +LV VD S++SV  
Sbjct: 108 FLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTG-VDDPYETPEKADLV-VDFSKQSVRS 165

Query: 241 SSNDIVELIHN 251
             ++I+ ++ +
Sbjct: 166 IVHEIILVLES 176

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 15/158 (9%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
           +I+  G  G GKS    T A++  A        +    R+       ++         Y 
Sbjct: 4   IILTIGCPGSGKS----TWAREFIAKNPGFYNINRDDYRQS------IMAHEERDEYKYT 53

Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
             ++      +        +   S  G+       +    P+      ++ K+       
Sbjct: 54  KKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLN----PERRLAWETFAKEYGWKVEH 109

Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELL 216
               V     ++R S+R    +  + L+   K  RE L
Sbjct: 110 KVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL 147

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 28/199 (14%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           +V  GL G GK     T A+K+ A+      S+    R        L  +A      Y+ 
Sbjct: 3   LVLMGLPGAGKG----TQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAK----QYMD 54

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYG-------MANELVKNSDLKLPDEDDDIYSWPKDL 173
             D+  D     +V +R        G             +  +  L D    +       
Sbjct: 55  RGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHID 114

Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
           ++ D+++    ++       +R +    +   L    + +  L  I             N
Sbjct: 115 VRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNI-------------N 161

Query: 234 SEKSVHESSNDIVELIHNL 252
            E+ + +   DI EL+  L
Sbjct: 162 GEQDMEKVFADIRELLGGL 180

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 21/192 (10%), Positives = 51/192 (26%), Gaps = 27/192 (14%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
           +++  G  G GKS  ++ +A              +    +       L +    +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65

Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
            A D+     K+   +         +                           L +P   
Sbjct: 66  IAADVAGRYAKEGYFVILDGVVRPDWLP---------------------AFTALARPLHY 104

Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
           I L  + A  ++R   R        +   +      L + + ++   E   +  S K   
Sbjct: 105 IVLRTTAAEAIERCLDRG------GDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTD 158

Query: 240 ESSNDIVELIHN 251
           ++    +  + +
Sbjct: 159 QALQSAINALQS 170

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 25/201 (12%)

Query: 56  RKYPLIV-FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-------------LREKF 101
            K PL + F G  G GKS TS  +   L             S             L E+F
Sbjct: 24  NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQF 83

Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
             +  L  R      +    Q++   +       D+             L K    +   
Sbjct: 84  KNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQ---------DTVVLPKYDKSQFKG 134

Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
           E D   +  K  +  D+ I                 N  L  + +  NAK       ++R
Sbjct: 135 EGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWR 194

Query: 222 N--MNNPELVFVDNSEKSVHE 240
           N  + +  +VF  ++  +V+ 
Sbjct: 195 NPEIKSLGIVFTTDNINNVYG 215

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 23/189 (12%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           +   GL G GK+    TV+  L+  L                   +L             
Sbjct: 22  VWLTGLSGAGKT----TVSMALEEYLV-----------CHGIPCYTLDGDNIR----QGL 62

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
            +++    + +   + R       +  A  +   S +    +D    +  + + +   + 
Sbjct: 63  NKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQD---RNNARQIHEGASLP 119

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
           +  V     L    +R    L +       K    + + Y     PELV +      V++
Sbjct: 120 FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELV-LKTDSCDVND 178

Query: 241 SSNDIVELI 249
               +VEL+
Sbjct: 179 CVQQVVELL 187

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 59  PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR---RAYYSL 115
            ++   G  G GK     T   ++      T  S+   LR++    DS        Y   
Sbjct: 2   LVVFVLGGPGAGKG----TQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKE 57

Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
           G  +  +     L+++           + + +        +L+  ++  D  +    ++ 
Sbjct: 58  GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 117

Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
            D    + +   +   + S R +   E  E  ++   +  + +  +Y  M    +  +D 
Sbjct: 118 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGK--VKKID- 174

Query: 234 SEKSVHESSNDIVELI 249
           + KSV E  +++V++ 
Sbjct: 175 ASKSVDEVFDEVVQIF 190

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)

Query: 56  RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
           +K  +I   G  G GK     T  +K+      T  S+   LR +  +          + 
Sbjct: 6   KKSKIIFVVGGPGSGKG----TQCEKIVQKYGYTHLSTGDLLRAEVSSG--------SAR 53

Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
           G  ++    K  L     V+D    +  A    ++         P E      + + + +
Sbjct: 54  GKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGF--LIDGYPREVKQGEEFERKIGQ 111

Query: 176 PDLVIYLTVSEAIRLQRLSRRKNF-----TLEENELKKNAKFRELLTTIYRNMNNPELVF 230
           P L++Y+        +RL +R          EE   K+   + +    +        +V 
Sbjct: 112 PTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVR 171

Query: 231 VDNSEKSVHESSNDIVELIHNL 252
             N+E SV +  + +   +  L
Sbjct: 172 KVNAEGSVDDVFSQVCTHLDTL 193

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 16/190 (8%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           IV  GL G GK     T A ++     +   S+    R                  +++ 
Sbjct: 3   IVLMGLPGAGKG----TQADRIVEKYGTPHISTGDMFRAAIQEGTE----LGVKAKSFMD 54

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
              +  D     +V +R   S    G   +         P       +  + L      I
Sbjct: 55  QGALVPDEVTIGIVRERLSKSDCDNGFLLDGF-------PRTVPQAEALDQLLADMGRKI 107

Query: 181 YLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
              ++ +  + + ++R       +    +          +    ++ E++   N +K + 
Sbjct: 108 EHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIK 167

Query: 240 ESSNDIVELI 249
           +   D+  ++
Sbjct: 168 DVFKDLDVIL 177

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 21/192 (10%), Positives = 49/192 (25%), Gaps = 20/192 (10%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           +   G +  GKS     +A     +         +  +   D               +  
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
             D       +   +D  + +T A+ +              +              D+ I
Sbjct: 70  YIDYAVRHSHKIAFIDTDFITTQAFCIQ----------YEGKAHPFLDSMIKEYPFDVTI 119

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
            L  +       L    +    +        F++LL  +      P   +++    S  +
Sbjct: 120 LLKNNTEWVDDGLRSLGSQKQRQQ-------FQQLLKKLLDKYKVP---YIEIESPSYLD 169

Query: 241 SSNDIVELIHNL 252
             N +  +I  +
Sbjct: 170 RYNQVKAVIEKV 181

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 25/189 (13%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           I   G  G GKS   + +A++L      +                 L     +       
Sbjct: 5   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGF---RDRE 61

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
            + I +  +KQ +V+     S  +    N L     +   +   +               
Sbjct: 62  EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLA----------- 110

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
                   R QR  +R    +E    +           +Y  + +   V +   ++S   
Sbjct: 111 --------RTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD---VTIRTDDQSAKV 159

Query: 241 SSNDIVELI 249
            +N I+ ++
Sbjct: 160 VANQIIHML 168

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 31/224 (13%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI------------------MSLREKF 101
            +  EG    GKS   + + K       +T P +                    +L +  
Sbjct: 4   RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63

Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQK-------QPVVMDRFWHSTSAY--GMANELV 152
               +     + +       +   +   +          + +R  +S          E  
Sbjct: 64  YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123

Query: 153 KNSDLKLPDEDDDIYSWPKDLMKP---DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN 209
             SD++     D       +          IYL  S  + L+RL +R     +  EL   
Sbjct: 124 SLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYL 183

Query: 210 AKFREL-LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
            +        +           + N    V + ++D  E +   
Sbjct: 184 EQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ 227

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 20/192 (10%)

Query: 60  LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
            I   GL   GKS    T+A +L+  L          L                 L   +
Sbjct: 26  TIWLTGLSASGKS----TLAVELEHQLVRDRRVHAYRLDGDNIRFG---------LNKDL 72

Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELV--KNSDLKLPDEDDDIYSWPKDLMKPD 177
              +  ++   + +       + S        +     D     +  ++ +  ++   P 
Sbjct: 73  GFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPF 132

Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
           + +Y+ V   +  QR  +       E  +K+       ++  Y    NPE+  V N E  
Sbjct: 133 VEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTG----ISAPYEAPANPEVH-VKNYELP 187

Query: 238 VHESSNDIVELI 249
           V ++   I++ +
Sbjct: 188 VQDAVKQIIDYL 199

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 37/192 (19%)

Query: 61  IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
           IVF G  G GKS    T+A+ L   L                         +      I 
Sbjct: 3   IVFIGFMGSGKS----TLARALAKDLD----------------------LVFLDSDFLIE 36

Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
            +  ++  +      + F+                           +    +L K    I
Sbjct: 37  QKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG---FVNVSNLEKAGFCI 93

Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT---IYRNMNNPELVFVDNSEKS 237
           YL        +RL   K+   +        K ++L       Y    N     ++   K+
Sbjct: 94  YLKADFEYLKKRL--DKDEISKRPLFYDEIKAKKLYNERLSKYEQKAN---FILNIENKN 148

Query: 238 VHESSNDIVELI 249
           + E  ++I ++I
Sbjct: 149 IDELLSEIKKVI 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.94
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.94
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.93
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.78
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.76
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.74
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.74
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.72
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.71
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.7
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.7
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.69
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.69
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.68
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.67
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.65
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.64
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.63
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.62
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.62
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.62
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.62
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.61
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.6
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.59
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.48
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.48
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.46
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.37
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.36
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.35
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.35
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.34
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.34
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.29
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.26
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.23
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.23
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.17
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.16
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	99.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.99
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.97
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.89
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.73
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.64
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.52
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.19
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.17
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.13
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.88
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.79
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.77
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.76
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.76
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.74
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.73
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.73
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.72
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.72
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.7
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.68
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.68
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.68
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.67
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.57
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.56
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.54
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.52
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.51
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.5
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.49
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.49
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.41
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.41
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.41
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.39
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.39
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.38
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.36
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.36
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.33
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.32
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.32
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.27
d1okkd2	207	GTPase domain of the signal recognition particle r	97.25
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.21
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.2
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.2
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.19
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.13
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.11
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.02
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	96.99
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.88
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.87
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.84
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.79
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.61
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.56
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.41
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.39
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.39
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.31
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.18
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.17
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.15
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.12
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.06
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.02
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.02
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.88
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.82
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.82
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.81
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.81
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.79
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.76
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.73
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.72
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.69
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.66
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.65
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.64
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.63
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.63
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.61
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.58
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.55
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.49
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.43
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.42
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.42
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.36
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.32
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.3
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.29
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.27
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.24
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.23
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.2
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.19
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.18
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.15
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.11
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.03
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.95
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.94
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.88
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.78
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.74
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.67
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.65
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.64
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.64
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.58
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.52
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.41
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.36
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.36
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.35
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.35
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.32
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.27
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.26
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.18
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.13
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.11
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.97
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.8
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.72
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.68
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.67
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.67
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.27
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.62
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.56
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.56
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.28
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.19
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.94
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.93
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.82
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.8
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.77
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.56
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.45
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.41
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.15
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.15
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.08
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.07
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.66
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	90.63
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.62
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.52
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	90.37
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.67
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.59
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.45
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.27
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.25
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.02
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.72
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	87.84
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	87.69
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	87.4
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.33
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.25
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.94
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.87
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.86
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.22
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.17
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	86.13
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.1
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.02
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.32
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.26
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.83
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	83.28
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.68
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	81.56
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.53
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	81.45

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.1e-26  Score=186.25  Aligned_cols=187  Identities=22%  Similarity=0.263  Sum_probs=131.3

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccc------cCCCCc--hHHHHHHhcccc-----c---hHHHHHHHH-HH
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK------STPPSS--IMSLREKFDAHD-----S---LLRRAYYSL-GN  117 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~------~~p~~~--~~~~~~~~~~~~-----~---~~~~~~~~~-~~  117 (259)
                      +|++  |+|+|++||||||+++.|+++|....+      .+|+.+  ++.+++.+....     .   .....++.+ ..
T Consensus         1 rgkf--IviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   78 (210)
T d4tmka_           1 RSKY--IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV   78 (210)
T ss_dssp             CCCE--EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHH
Confidence            3556  999999999999999999999865432      345443  356666654321     1   111222333 33


Q ss_pred             HHHHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhc
Q psy16563        118 YIAAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR  196 (259)
Q Consensus       118 ~~~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R  196 (259)
                      +.....+.+++ ++..||+|||++++.+|+...   .+.+   ......+..+....+.||++|||++||+++.+|+.+|
T Consensus        79 ~~~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R  152 (210)
T d4tmka_          79 QLVETVIKPALANGTWVIGDRHDLSTQAYQGGG---RGID---QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  152 (210)
T ss_dssp             HHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTT---TCCC---HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccccchhhhhhhhhccc---cccc---hhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhc
Confidence            45555677776 689999999999998886421   1110   1223344444445678999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        197 KNFTLEENELKKNAKFRELLTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       197 ~~~~~~~~~~e~~~~~~~~~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +..++.+..   ..++++++++.|.++.  .+.+++||++.+ +|++.++|.+.|.+..
T Consensus       153 ~~~~~~~~~---~~~~~~~v~~~y~~~~~~~~~~~~IDa~~~-~e~v~~~I~~~i~~~l  207 (210)
T d4tmka_         153 GELDRIEQE---SFDFFNRTRARYLELAAQDKSIHTIDATQP-LEAVMDAIRTTVTHWV  207 (210)
T ss_dssp             SSCCTTTTS---CHHHHHHHHHHHHHHHHTCTTEEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred             cccchhhhc---cHHHHHHHHHHHHHHHhcCCCEEEEECCCC-HHHHHHHHHHHHHHHH
Confidence            865432221   5678899999998873  456999999987 9999999999987653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-25  Score=184.02  Aligned_cols=183  Identities=25%  Similarity=0.311  Sum_probs=122.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc--cccCCCCc---hHHHHHHhcccc-c---hHHHHHHHHHHHHHHHHHHHHh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS--LKSTPPSS---IMSLREKFDAHD-S---LLRRAYYSLGNYIAAQDIKQDL  128 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~--~~~~p~~~---~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~i~~~l  128 (259)
                      .++|+|+|++||||||++++|+++|...  .+.+|+..   +..+++.+..+. .   .....+|+++++.....+.+.+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~~l   82 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDL   82 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3449999999999999999999999654  34555532   245566654432 1   2234566677766656666655


Q ss_pred             -CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        129 -QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       129 -~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                       .|.+||+|||++|+++|+.++.    .   ......++..+....+.||++|||++||++..+|..+|+... .+    
T Consensus        83 ~~g~~VI~DRy~~S~~ayq~~~~----~---~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~-~e----  150 (214)
T d1tmka_          83 LEGKNIVMDRYVYSGVAYSAAKG----T---NGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDER-YE----  150 (214)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTC----C---TTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSST-TC----
T ss_pred             hcCCeeEecCccccchHhhhhcc----c---chHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhh-hh----
Confidence             7899999999999999986532    1   012245555666667899999999999999999987776432 11    


Q ss_pred             HHHHHHHHHHHHHHhcC-------CCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        208 KNAKFRELLTTIYRNMN-------NPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~-------~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                       ..++++++++.|.++.       ...+++||+++.+++++.++|.+.|+.+.
T Consensus       151 -~~~~~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l  202 (214)
T d1tmka_         151 -TVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL  202 (214)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence             3457788888887662       34589999987669999999999887653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=181.13  Aligned_cols=180  Identities=26%  Similarity=0.269  Sum_probs=126.6

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhccc-----ccCCCCc--h-HHHHHHhccccc---hHHHHHHHHHHHHHHHH
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASL-----KSTPPSS--I-MSLREKFDAHDS---LLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~-----~~~p~~~--~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  123 (259)
                      +|.+  |+|+|++||||||+++.|+++|....     +.+|+..  . ..++..+.....   .....+|.+.++.....
T Consensus         2 rG~l--I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~   79 (209)
T d1nn5a_           2 RGAL--IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL   79 (209)
T ss_dssp             CCCE--EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             CeeE--EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHh
Confidence            4555  99999999999999999999987543     3456532  3 334444444322   23345666666665667


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE  202 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~  202 (259)
                      +.+++ +|.+||+|||+.++++|+...   .+.      ....+..+....++||++|||++|++++.+|+..|++.  .
T Consensus        80 i~~~l~~g~~VI~DRy~~s~~ay~~~~---~~~------~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~--~  148 (209)
T d1nn5a_          80 IKEKLSQGVTLVVDRYAFSGVAFTGAK---ENF------SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHER--Y  148 (209)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTS---TTC------CHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CT--T
T ss_pred             HHHHhhcccceeecchhhhhhhhhhhc---cCc------cHHHHHHHhccCCCCceeeeecccHHHHhhhhcccccc--c
Confidence            78776 689999999999999997542   111      12334444456788999999999999999998766532  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--C-CeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        203 ENELKKNAKFRELLTTIYRNMNN--P-ELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       203 ~~~~e~~~~~~~~~~~~y~~~~~--~-~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      +     ..++++++.+.|.++..  + ++++||++++ ++++.++|.+++....
T Consensus       149 E-----~~~~~~r~~~~Y~~l~~~~~~~~~~IDa~~~-~e~V~~~I~~~v~~~l  196 (209)
T d1nn5a_         149 E-----NGAFQERALRCFHQLMKDTTLNWKMVDASKS-IEAVHEDIRVLSEDAI  196 (209)
T ss_dssp             C-----SHHHHHHHHHHHHHHTTCTTSCEEEEETTSC-HHHHHHHHHHHHHHHH
T ss_pred             c-----cHHHHHHHHHHHHHHHHhCCCCEEEEECCCC-HHHHHHHHHHHHHHHH
Confidence            1     34578888999999852  2 5899999987 9999999999987763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=3.6e-24  Score=173.17  Aligned_cols=185  Identities=19%  Similarity=0.221  Sum_probs=119.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCC--c-hHHHHHHhcccc----c---hHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPS--S-IMSLREKFDAHD----S---LLRRAYYSLGNYIAAQD  123 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~--~-~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~  123 (259)
                      ++|+|+|++||||||+++.|+++|...     .+.+|..  . ...++..+....    .   .....++....+.....
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHh
Confidence            469999999999999999999998654     2345642  2 234444332211    1   11122233333333333


Q ss_pred             HHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc--
Q psy16563        124 IKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT--  200 (259)
Q Consensus       124 i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~--  200 (259)
                      +.+.. .+..||+|||++++.+|..++...... .........+..+....+.||++|||++||+++.+|+.+|++..  
T Consensus        81 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~  159 (208)
T d1gsia_          81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAA-GKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPG  159 (208)
T ss_dssp             HHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTT-SHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhhcccccccchhhhHHHHHhhccchhhh-hhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhccccc
Confidence            33333 689999999999999887654322111 00000112222344456789999999999999999999997321  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEeCCCCCHhhHHHHH
Q psy16563        201 LEENELKKNAKFRELLTTIYRNMN----NPELVFVDNSEKSVHESSNDI  245 (259)
Q Consensus       201 ~~~~~~e~~~~~~~~~~~~y~~~~----~~~~~vID~s~~~~eev~~~I  245 (259)
                      ...+..+...+|++++++.|.++.    ..++++||++.+ +++|.++|
T Consensus       160 ~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~-~e~V~~~i  207 (208)
T d1gsia_         160 RARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVD-PGRLAATL  207 (208)
T ss_dssp             CCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCC-HHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-HHHHHHhh
Confidence            122233446789999999999983    235899999987 99999886

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.4e-20  Score=153.46  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             CCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-------------CCCeEEEeCCCCCHhh
Q psy16563        174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-------------NPELVFVDNSEKSVHE  240 (259)
Q Consensus       174 ~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-------------~~~~~vID~s~~~~ee  240 (259)
                      +.||++|||++||+++++|+.+|++.....    ...+|++++.+.|+++-             ..++++||++.+ +++
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~----~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~-ie~  225 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNEEQG----IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNED-FKD  225 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGGGTT----CCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSC-HHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhhcchhhhc----CCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCC-HHH
Confidence            569999999999999999999988532211    14668888888888751             236899999876 999


Q ss_pred             HHHHHHHHHhcc
Q psy16563        241 SSNDIVELIHNL  252 (259)
Q Consensus       241 v~~~I~~~l~~~  252 (259)
                      +.++|.+.|+..
T Consensus       226 v~~~i~~~i~~~  237 (241)
T d1p5zb_         226 KYESLVEKVKEF  237 (241)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.2e-19  Score=145.19  Aligned_cols=181  Identities=18%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc-cCCCCc------------h-----HHHHHHhccccchHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK-STPPSS------------I-----MSLREKFDAHDSLLRRAYYSLGNYIA  120 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~-~~p~~~------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (259)
                      ++|+|+|++||||||+++.|+++++...+ .+|...            .     ..+...|+.++..   ..+..+....
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~~~i~~epv~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~---~~~~~q~~~~   79 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPAR---WSYTFQTFSF   79 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHH---HHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhhcCCcccccCccceeecCCCCchHHHHHHHHHhhhhhccchh---hhhHHHHHHH
Confidence            45999999999999999999999986543 222110            0     1234444444321   1111122222


Q ss_pred             HHHH--------HHHh--CCCcEEEcCCccchhhhhhhhhhccccCCCCCcch-hhh---hc----ccccCCCCCEEEEE
Q psy16563        121 AQDI--------KQDL--QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED-DDI---YS----WPKDLMKPDLVIYL  182 (259)
Q Consensus       121 ~~~i--------~~~l--~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~-~~l---~~----~~~~~~~pdlvI~L  182 (259)
                      ..+.        .+.+  .+..+++||++.+...+........+.   ..... ...   ..    .....+.||++|||
T Consensus        80 ~~r~~~~~~~~~~~~~~~~~~~vi~dr~~~s~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~L  156 (241)
T d2ocpa1          80 LSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGS---LSDIEWHIYQDWHSFLLWEFASRITLHGFIYL  156 (241)
T ss_dssp             HHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSHHHHCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhhcccchhhhhhhhhhhhhhcc---chhHHHHHHHHHHHHHhhhhccccccceEEEe
Confidence            2211        1222  357899999999876654332222221   01111 111   11    12223569999999


Q ss_pred             ecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcC-------------CCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        183 TVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMN-------------NPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       183 ~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~-------------~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ++||+++++|+.+|++.... .   ...+|++++++.|+++-             ..++++||++.+ ++++.+.+.+++
T Consensus       157 d~~~~~~~~Ri~~r~r~~E~-~---i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~d-~~~~~~~~~~i~  231 (241)
T d2ocpa1         157 QASPQVCLKRLYQRAREEEK-G---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDD-FSEEVTKQEDLM  231 (241)
T ss_dssp             ECCHHHHHHHHHHSCCTTTT-T---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSC-TTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccchhhh-c---CCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCCc-hhhhHHHHHHHH
Confidence            99999999999999864321 1   14678899999998751             135899999864 555544444444


Q ss_pred             h
Q psy16563        250 H  250 (259)
Q Consensus       250 ~  250 (259)
                      +
T Consensus       232 ~  232 (241)
T d2ocpa1         232 R  232 (241)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.77  E-value=5.3e-18  Score=135.13  Aligned_cols=172  Identities=16%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHH--------HHHHHHHHH
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSL--------GNYIAAQDI  124 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~i  124 (259)
                      ++++++|+|.||+||||||+|+.||+.+|..++..    ++.+++..........  ..+...        ..+.....+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~----g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA----GDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAI   78 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH----HHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEch----hhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHh
Confidence            45577899999999999999999999999877642    2333433322221100  000000        001111111


Q ss_pred             HHHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc-hHH
Q psy16563        125 KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT-LEE  203 (259)
Q Consensus       125 ~~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~-~~~  203 (259)
                      . ......+++|.|+.+....                  ..+.........|+++|+|+||++++.+|+..|+... +..
T Consensus        79 ~-~~~~~~~i~dg~p~~~~~~------------------~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~  139 (194)
T d1qf9a_          79 D-ANQGKNFLVDGFPRNEENN------------------NSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSD  139 (194)
T ss_dssp             H-TSTTCCEEEETCCCSHHHH------------------HHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTT
T ss_pred             h-hhhcCCeEEEecchhhhhH------------------HHHHhhhhhcccccEEEEeecchHHHHHHHHhhcccccccc
Confidence            1 1134567888776653211                  1122222334569999999999999999998876321 111


Q ss_pred             HHHH----HHHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        204 NELK----KNAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       204 ~~~e----~~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      +..+    ....|.+.   +.+.|.+  ...+++||++.+ +++++++|.++|+.+
T Consensus       140 d~~e~~~~Rl~~y~~~~~~~~~~y~~--~~~~~~Id~~~~-ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         140 DNIESIKKRFNTFNVQTKLVIDHYNK--FDKVKIIPANRD-VNEVYNDVENLFKSM  192 (194)
T ss_dssp             CSHHHHHHHHHHHHHTHHHHHHHHHH--TTCEEEEECSSC-HHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEECCCC-HHHHHHHHHHHHHHc
Confidence            1111    01112221   1222322  234789999887 999999999999876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.77  E-value=1.3e-17  Score=132.43  Aligned_cols=165  Identities=16%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHH--------HHHHHHHHHH-HH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYS--------LGNYIAAQDI-KQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~i-~~  126 (259)
                      ++.|+|.||+||||||+|+.|+++++..++..    ...+++............  ++.        .........+ ..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   78 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAHISA----GDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQP   78 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH----HHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcEEeh----hHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhc
Confidence            55699999999999999999999999988742    222332222111110000  000        0000111111 11


Q ss_pred             HhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHH
Q psy16563        127 DLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL  206 (259)
Q Consensus       127 ~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~  206 (259)
                      ......+++|.++...                     .+...+......|+++|||++|++++.+|+..|+..+....+ 
T Consensus        79 ~~~~~~~vid~~~~~~---------------------~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~r-  136 (189)
T d1zaka1          79 DAQENGWLLDGYPRSY---------------------SQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLR-  136 (189)
T ss_dssp             HHHHTCEEEESCCCSH---------------------HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHH-
T ss_pred             ccccCcEEeeccchhh---------------------HHHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHH-
Confidence            1223456777665432                     111111222356999999999999999999888754333322 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                        ...|.+........ +...+++||++.+ +++++++|.+.|..+
T Consensus       137 --l~~y~~~~~~l~~~-y~~~~~~Id~~~~-idev~~~I~~~l~~i  178 (189)
T d1zaka1         137 --LETYYQNIESLLST-YENIIVKVQGDAT-VDAVFAKIDELLGSI  178 (189)
T ss_dssp             --HHHHHHHHHHHHHT-TCCCEEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHH-hCCCEEEEECCCC-HHHHHHHHHHHHHHH
Confidence              22333333322222 2335789999987 999999999998765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.3e-18  Score=133.51  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHH--HHHHHHH----HHHHH----HHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR--RAYYSLG----NYIAA----QDIKQDL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----~~i~~~l  128 (259)
                      |.|+|.|||||||||+|+.|+++++..+++.    .+.+++..........  ..++...    .....    ..+....
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~----~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~   76 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQIST----GDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED   76 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEH----HHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceech----hhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccc
Confidence            3589999999999999999999999887642    1222222211111000  0000000    01111    1111111


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ....++.|.|+.+..                     +...+......||++|||+||++++.+|+..|+..+....+++.
T Consensus        77 ~~~g~i~~g~pr~~~---------------------~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~  135 (179)
T d1e4va1          77 CRNGFLLDGFPRTIP---------------------QADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVE  135 (179)
T ss_dssp             GGGCEEEESCCCSHH---------------------HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cccceeecccccchH---------------------HhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHH
Confidence            234667776654421                     11112222456999999999999999999998754322233222


Q ss_pred             HHHHHHHHHHHHHhcC---CCCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        209 NAKFRELLTTIYRNMN---NPELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~---~~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      ..+....+.+.|.+..   ...++.||++.+ +++|.++|.++|
T Consensus       136 y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~-ieeV~~~I~~~l  178 (179)
T d1e4va1         136 YHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP-VAEVRADLEKIL  178 (179)
T ss_dssp             HHHHTTHHHHHHHHHHHHTSCEEEEEETTSC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCcEEEEECCCC-HHHHHHHHHHHh
Confidence            2222233566676542   334899999987 999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.74  E-value=1e-17  Score=131.60  Aligned_cols=177  Identities=14%  Similarity=0.181  Sum_probs=101.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCc-hHHHHHHhcccc------ch--HHHHHHHHHHHHHHHHHHHHhC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSS-IMSLREKFDAHD------SL--LRRAYYSLGNYIAAQDIKQDLQ  129 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~-~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~i~~~l~  129 (259)
                      ++|+|+|++||||||+++.|+++|+......+... .+..+.......      ..  ................+.....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            46999999999999999999999987765433222 222233221110      00  0000000011122333444557


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCch---HHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENEL  206 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~~  206 (259)
                      +..+++|+++.+...+...    .       .....    ......|+++|||+++|+++.+|+.+|+...+   .....
T Consensus        82 ~~~vl~d~~~~~~~~~~~~----~-------~~~~~----~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~  146 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYL----P-------GLPSW----VLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTI  146 (190)
T ss_dssp             TSCEEEECCSEEEETTEEE----E-------SSCHH----HHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHH
T ss_pred             CCeEEECCcccchHHHHHH----H-------hhhhh----hhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHH
Confidence            8899999987654322210    0       00011    11224589999999999999999987653221   11111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       207 e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      +....+.+.....|......++.+|++++.++|+++++|.+.|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         147 EQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            21233334444455545555666676666569999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.9e-17  Score=126.81  Aligned_cols=162  Identities=14%  Similarity=0.048  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-KFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      .++|+|.|++||||||+++.|++.++..++............ .......... ..... .......+...+ .+..++.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~   83 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD-DRKPW-LQALNDAAFAMQRTNKVSLI   83 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHH-HHHHH-HHHHHHHHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehh-hhHHH-HHHHHHHHHHHHhccCceEe
Confidence            456999999999999999999999998776442211111111 1111111100 00000 011112222223 3444544


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      +.....                      .....+......+..+|||+||++++.+|+.+|++......       ..+.
T Consensus        84 ~~~~~~----------------------~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~-------~~~~  134 (171)
T d1knqa_          84 VCSALK----------------------KHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQ-------MLVT  134 (171)
T ss_dssp             ECCCCS----------------------HHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHH-------HHHH
T ss_pred             eccchH----------------------HHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHH-------HHHh
Confidence            421110                      11112233345577899999999999999999975422211       1222


Q ss_pred             HHHHHHhcC--CCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        216 LTTIYRNMN--NPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       216 ~~~~y~~~~--~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      ..+.++...  .+++++||++++ +|+++++|.++|++
T Consensus       135 ~~~~~e~~~~~e~~~~~id~~~~-~e~v~~~i~~~lk~  171 (171)
T d1knqa_         135 QFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK  171 (171)
T ss_dssp             HHHHCCCCCTTCTTEEEEECSSC-HHHHHHHHHHHHHC
T ss_pred             hHHHhhCCCcccCCEEEEeCCCC-HHHHHHHHHHHhcC
Confidence            223333322  235789999987 99999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.3e-17  Score=133.07  Aligned_cols=166  Identities=16%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccc-cCCCCc-----hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH---
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK-STPPSS-----IMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQD---  127 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~-~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---  127 (259)
                      ++++|+|+|++||||||+++.|++.++...+ .+|...     ...+.+.+..++.   ...+..+...........   
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~~ep~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   84 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPK---KWAMPFQSYVTLTMLQSHTAP   84 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHH---HHHHHHHHHHHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEEEEecCccccccchhHhhhhccccc---cccchHHHHHHHHHHHHHHHH
Confidence            3557999999999999999999999976543 344221     1233344443322   112222222222222221   


Q ss_pred             hCCCcEEEcCCccc------hhhhhhhhhhccccCCCCCcchhhhhcc--cccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        128 LQKQPVVMDRFWHS------TSAYGMANELVKNSDLKLPDEDDDIYSW--PKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       128 l~~~~vi~Dr~~~s------~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      .....++.++.+.+      ..++...     .+.......+..++.+  ......||++|||++||+++++|+.+|++.
T Consensus        85 ~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~~~~~~Ri~~R~r~  159 (197)
T d2vp4a1          85 TNKKLKIMERSIFSARYCFVENMRRNG-----SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARS  159 (197)
T ss_dssp             CCSSEEEEESCHHHHHHTHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCG
T ss_pred             hcccccccCceeecchHHHHHHHHHhc-----cCChhHHHHHHHHHHHHHhhcccccchhheeecCHHHHHHHHHHhCch
Confidence            13445566655543      3333221     1100000111122221  122467999999999999999999999854


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcC-------CCCeEEEeCC
Q psy16563        200 TLEENELKKNAKFRELLTTIYRNMN-------NPELVFVDNS  234 (259)
Q Consensus       200 ~~~~~~~e~~~~~~~~~~~~y~~~~-------~~~~~vID~s  234 (259)
                      ....    ...+|++.++..|+++-       ..++++||++
T Consensus       160 ~E~~----i~~~yl~~l~~~Y~~~~~~~~~~~~~~v~~iD~n  197 (197)
T d2vp4a1         160 EESC----VPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  197 (197)
T ss_dssp             GGTT----CCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             hhhc----CCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence            2111    14568889999998861       2358999985

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=8e-17  Score=126.84  Aligned_cols=162  Identities=19%  Similarity=0.242  Sum_probs=94.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHHh----C
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQDL----Q  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~l----~  129 (259)
                      .|+|.|||||||||+|+.|++++|..++..    .+.+++.+.........  .+....    .......+...+    .
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~----~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~   77 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST----GELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA   77 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH----HHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch----HHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccc
Confidence            499999999999999999999999887742    12233322221111000  000000    011222233222    2


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhc-ccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS-WPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ...++.|.|+......                  ..+.. +......|+++++|+++++++.+|+.+|+.....+..   
T Consensus        78 ~~~~i~d~~p~~~~~~------------------~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~---  136 (181)
T d2cdna1          78 ANGFILDGYPRSVEQA------------------KALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDV---  136 (181)
T ss_dssp             TTCEEEESCCCSHHHH------------------HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHH---
T ss_pred             cccEEecccccchhHH------------------HHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHH---
Confidence            4568888876543211                  11111 1123456999999999999999999988743221111   


Q ss_pred             HHHHHHHHHHHHHhc-------CCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        209 NAKFRELLTTIYRNM-------NNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~-------~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                         ..+++. .|.+.       +...+++||++++ +++++++|.+.|++
T Consensus       137 ---i~~rl~-~y~~~~~~l~~~y~~~~~~Id~~~s-~eeV~~~I~~~l~k  181 (181)
T d2cdna1         137 ---ILNRMK-VYRDETAPLLEYYRDQLKTVDAVGT-MDEVFARALRALGK  181 (181)
T ss_dssp             ---HHHHHH-HHHHHTTTHHHHTTTTEEEEECCSC-HHHHHHHHHHHTTC
T ss_pred             ---HHHHHH-HHHHHHHHHHHHHhcCeEEEECCCC-HHHHHHHHHHHhCc
Confidence               112222 22221       1235899999987 99999999988753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-16  Score=126.49  Aligned_cols=170  Identities=16%  Similarity=0.241  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHH--HHHHH--------HHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRA--YYSLG--------NYIAAQDIKQ  126 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~--~~~~~--------~~~~~~~i~~  126 (259)
                      +|+|+|.||+||||||+|+.||+++|..++..    ++.+|+...... ......  .+...        .......+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~----g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~   76 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA----GELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQ   76 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH----HHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcH----HHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcc
Confidence            36799999999999999999999999887743    334444332211 111100  00000        0111122221


Q ss_pred             H----hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch
Q psy16563        127 D----LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL  201 (259)
Q Consensus       127 ~----l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~  201 (259)
                      .    .....++.|.|+.+....                  ..+..+......++++++++++.++..+|..+|+.. .+
T Consensus        77 ~~~~~~~~~~~~~~g~pr~~~~~------------------~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r  138 (194)
T d1teva_          77 TMAANAQKNKFLIDGFPRNQDNL------------------QGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGR  138 (194)
T ss_dssp             HHHHCTTCCEEEEESCCCSHHHH------------------HHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSC
T ss_pred             cchhhhcccceeeccchhhHHHH------------------HHHhhhhhccccccEEEeecCcchhheeecccCCCcccC
Confidence            1    135677888776542111                  111112222345789999999999999999988521 11


Q ss_pred             HHHH---HH-HHHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        202 EENE---LK-KNAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       202 ~~~~---~e-~~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .++.   .. ....|.+.   +.+.|.+.  ..+++||++.+ +++++++|.+.|++.
T Consensus       139 ~~~~~e~i~~r~~~y~~~~~~l~~~y~~~--~~~~~IDa~~s-~eeV~~~I~~il~k~  193 (194)
T d1teva_         139 SDDNRESLEKRIQTYLQSTKPIIDLYEEM--GKVKKIDASKS-VDEVFDEVVQIFDKE  193 (194)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEETTSC-HHHHHHHHHHHHHHC
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHhcC
Confidence            1111   11 11223332   23334332  24678999986 999999999999764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.70  E-value=3.5e-17  Score=140.36  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc-----cccCCCC-----chHHHHHHhcccc--------ch--HHHHHHHHH---
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS-----LKSTPPS-----SIMSLREKFDAHD--------SL--LRRAYYSLG---  116 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~-----~~~~p~~-----~~~~~~~~~~~~~--------~~--~~~~~~~~~---  116 (259)
                      .|+|+|+.||||||+++.|+++++..     ++.+|..     .+..+.+.+++.+        ..  .....+..+   
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP~~~W~~~~g~~~l~~iy~~~~r~~~g~~~~~~~~~~~~~~Q~~f   86 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLF   86 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCchHhhhccCCCcHHHHHHHhHHhccccccchhhHHHHHHHHHHHH
Confidence            39999999999999999999998754     4566621     0111222222211        11  111122222   


Q ss_pred             ---HHHHHHHHHHHh-------------CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEE
Q psy16563        117 ---NYIAAQDIKQDL-------------QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV  179 (259)
Q Consensus       117 ---~~~~~~~i~~~l-------------~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlv  179 (259)
                         .......+.+..             .+..||+||++.+.. .|...+...|.+  . ...+..++.+....++||++
T Consensus        87 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~VI~DR~~~Ss~~~F~~~~~~~G~i--~-~~~~~~l~~~~~~~~~pdli  163 (331)
T d1osna_          87 CSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDM--S-PAALPGLLFTLPAEPPGTNL  163 (331)
T ss_dssp             HHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSS--C-GGGHHHHHTTCCCCCSCCEE
T ss_pred             hhhHHHHHHHHHHHHhhhhhcccccccCCCCEEEEECCHhHHHHHHHHHhhhcCCC--C-HHHHHHHHHHhcccCCCCEE
Confidence               222333444322             134699999999874 344333222222  1 23355566666666789999


Q ss_pred             EEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       180 I~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      |||++||+++++|+++||+..  |.   ...+|+++++..|..+
T Consensus       164 IyLd~~pe~~l~RIk~RgR~~--E~---i~~eYL~~L~~~Y~~L  202 (331)
T d1osna_         164 VVCTVSLPSHLSRVSKRARPG--ET---VNLPFVMVLRNVYIML  202 (331)
T ss_dssp             EEEECCHHHHHHHCC--------CC---CCHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHcCCCC--CC---CCHHHHHHHHHHHHHH
Confidence            999999999999999998643  11   1567999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.70  E-value=2.4e-17  Score=141.05  Aligned_cols=156  Identities=12%  Similarity=0.124  Sum_probs=91.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc---cccCCCCc-----hHHHHHHhccccc--------h--HHHHHHHHHH----
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS---LKSTPPSS-----IMSLREKFDAHDS--------L--LRRAYYSLGN----  117 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~---~~~~p~~~-----~~~~~~~~~~~~~--------~--~~~~~~~~~~----  117 (259)
                      .|+|+|+.||||||+++.|++.++..   ++.+|...     ...+.+.|++++.        .  .....+.++.    
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~~~v~~~~EP~~~W~~~~~~~~L~~~y~~~~r~~~~~~~~~d~~~~~~~~Ql~fa~   85 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGM   85 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCCCCeEEeccchhhccCCCCCchHHHHHhhHHhhccccccccchhhhhHHHHHHHHH
Confidence            49999999999999999999988654   34555210     0112222222110        0  0111222222    


Q ss_pred             --HHHHHHHHHHh-----------CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEe
Q psy16563        118 --YIAAQDIKQDL-----------QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLT  183 (259)
Q Consensus       118 --~~~~~~i~~~l-----------~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~  183 (259)
                        ......+.+.+           .+.+||+||++++.. .|..++...|.+  . ...+..+..+....++||++|||+
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ivI~DRs~~S~~~vFa~~~~~~G~m--s-~~~~~~l~~~~~~~~~pdliIyLd  162 (329)
T d1e2ka_          86 PYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSM--T-PQAVLAFVALIPPTLPGTNIVLGA  162 (329)
T ss_dssp             HHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSS--C-HHHHHHHHHTCCCCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhhhhcccccccCCCceeeecchhhhhHHHHHHHHhcCCC--C-HHHHHHHHHHhcccCCCCEEEEEe
Confidence              22222222221           245799999999874 444333222222  1 233455566666677899999999


Q ss_pred             cCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        184 VSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       184 a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      +||+++++||.+|++..+  .   ...+|+++++..|..+
T Consensus       163 ~~pe~~l~RI~~RgR~~E--~---idl~YL~~L~~~Y~~L  197 (329)
T d1e2ka_         163 LPEDRHIDRLAKRQRPGE--R---LDLAMLAAIRRVYGLL  197 (329)
T ss_dssp             CCHHHHHHHHHHSCCTTC--C---CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCcC--C---CCHHHHHHHHHHHHHH
Confidence            999999999999986431  1   1467888888888765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.5e-16  Score=123.06  Aligned_cols=171  Identities=18%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHH--HHH---------HHHHHHHH
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRR--AYY---------SLGNYIAA  121 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~--~~~---------~~~~~~~~  121 (259)
                      .+++.++|+|.||+||||||+|+.|++++|..++..    ++.+|....... .+...  .++         ........
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~----gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA----GDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN   79 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH----HHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEeh----hHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHH
Confidence            345578899999999999999999999999887753    233333322211 11000  000         00011111


Q ss_pred             HHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-
Q psy16563        122 QDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-  199 (259)
Q Consensus       122 ~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-  199 (259)
                      ....... ....+++|.++...                     ++...+......|+.+++|++|++++.+|+.+|+.. 
T Consensus        80 ~~~~~~~~~~~~~vl~g~p~~~---------------------~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~  138 (196)
T d1ukza_          80 AISDNVKANKHKFLIDGFPRKM---------------------DQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS  138 (196)
T ss_dssp             HHHHHHHTTCCEEEEETCCCSH---------------------HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCceeeeccchhH---------------------HHHHHHHHhccccceeeccCCCHHHHHHHHHhccccc
Confidence            1222222 45677888665432                     111112222456899999999999999999876521 


Q ss_pred             ----chHHHHHHHHHHHHH---HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        200 ----TLEENELKKNAKFRE---LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       200 ----~~~~~~~e~~~~~~~---~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                          ...+.-......|.+   .+.+.|++  ...++.||++.+ +++++++|.+.|++.
T Consensus       139 ~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~--~~~~~~Id~~~s-~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         139 GRSDDNIESIKKRFNTFKETSMPVIEYFET--KSKVVRVRCDRS-VEDVYKDVQDAIRDS  195 (196)
T ss_dssp             CCTTCSHHHHHHHHHHHHHTTHHHHHHHHT--TTCEEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEECCCC-HHHHHHHHHHHHHhh
Confidence                111110000111221   12222321  224789999986 999999999999753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.9e-16  Score=123.63  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHH--------HHHHHHHHHHHHH-Hh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYY--------SLGNYIAAQDIKQ-DL  128 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~i~~-~l  128 (259)
                      .|+|.||+||||||+|+.|++.+|..++..    .+.+++...........  .++        ......+...+.. ..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~----~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT----GDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   79 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEH----HHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEec----cccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcc
Confidence            488999999999999999999999887743    11222222211111000  000        0001111122222 22


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ....+++|.|+.+......               ...+..  ....+||++|+|+++++++.+|+..|..   ...+.+.
T Consensus        80 ~~~g~i~dg~p~~~~q~~~---------------~~~~l~--~~~~~~~~vi~L~~~~~~~~~R~~~~~~---~~~r~~~  139 (180)
T d1akya1          80 CKNGFILDGFPRTIPQAEK---------------LDQMLK--EQGTPLEKAIELKVDDELLVARITNADA---LKKRLAA  139 (180)
T ss_dssp             GGSCEEEESCCCSHHHHHH---------------HHHHHH--HHTCCCCEEEEEECCHHHHHHHHHSHHH---HHHHHHH
T ss_pred             ccCCEeccCccchhhhHHH---------------HHhhHH--HcCCCceeeeecccccchhhhccccccc---ccchHHH
Confidence            3567888988765321110               111111  1234589999999999999999976631   1111111


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .....+.+.+.|.+..  .+++||++++ +++|+++|.+.|.+
T Consensus       140 y~~~~~~v~~~y~~~~--~~~~Id~~~~-~eeV~~~I~~~l~k  179 (180)
T d1akya1         140 YHAQTEPIVDFYKKTG--IWAGVDASQP-PATVWADILNKLGK  179 (180)
T ss_dssp             HHHHTTHHHHHHHHHT--CEEEEETTSC-HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcC--CEEEEECCCC-HHHHHHHHHHHHcc
Confidence            1122223455565432  3788999987 99999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.68  E-value=1.4e-15  Score=119.22  Aligned_cols=170  Identities=21%  Similarity=0.245  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHH----Hh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQ----DL  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~----~l  128 (259)
                      |.|+|.|||||||||+|+.||+++|..++..    .+.+++...........  .+....    .......+..    ..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~----~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHIST----GDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD   76 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH----HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceech----hHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchh
Confidence            3599999999999999999999999887743    12222222111111000  000000    0011111111    11


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKK  208 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~  208 (259)
                      ....++.+.+..........               ....  ......++++++|+++.+...+|+..|+..+....+++.
T Consensus        77 ~~~~~v~~~~~~~~~~~~~~---------------~~~~--~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~  139 (182)
T d1zina1          77 CQNGFLLDGFPRTVAQAEAL---------------ETML--ADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEV  139 (182)
T ss_dssp             GTTCEEEESCCCSHHHHHHH---------------HHHH--HHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             hhcCcccccccchhHHHHHH---------------HHhh--hccCCceeeeeccccccchhhhccccccchHHHHHHHHH
Confidence            23456777666543222110               0000  112355899999999999999999988754322222222


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        209 NAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       209 ~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .......+.+.|.+.  ..+++||++.+ +++++++|.++|..+
T Consensus       140 y~~~~~~l~~~y~~~--~~~~~Id~~~~-~eeV~~~I~~~L~~l  180 (182)
T d1zina1         140 NMKQMKPLVDFYEQK--GYLRNINGEQD-MEKVFADIRELLGGL  180 (182)
T ss_dssp             HHHHHTHHHHHHHHH--TCEEEEECSSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHhc
Confidence            222222344445443  24788999986 999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.67  E-value=4.5e-16  Score=122.45  Aligned_cols=176  Identities=13%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCC-chHHHHHHhccccc-----------hHH-HHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-SIMSLREKFDAHDS-----------LLR-RAYYSLGNYIAAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~i~  125 (259)
                      ++|+|+|++||||||+++.|+++|+..++..+.- .++..+........           ... ...+....+...+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            4689999999999999999999998765433211 11222222111100           001 1111111111111111


Q ss_pred             HHhCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchH---
Q psy16563        126 QDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLE---  202 (259)
Q Consensus       126 ~~l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~---  202 (259)
                      . .....++.|.+.........    ..++       ...+.    ..+.||++|||++|++++.+|+.+|....+.   
T Consensus        82 ~-~~~~~~i~~~~~~~~~~~~~----~~~~-------~~~~~----~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~  145 (194)
T d1nksa_          82 A-GGEGYLFIDTHAVIRTPSGY----LPGL-------PSYVI----TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYS  145 (194)
T ss_dssp             H-TCSSEEEEEECSEEEETTEE----EESS-------CHHHH----HHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCC
T ss_pred             H-hCCCcEEEEccCchHHHHHH----HHhH-------HHHHH----hhhccccceEEecCHHHHHHHHHHhhhcccccch
Confidence            1 23455556544332111110    0000       01111    1235899999999999999999887633211   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        203 -ENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       203 -~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                       +.......++.+.....+......++.+|++++.++++++++|.+.|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         146 DESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence             111111122222222223222345677777777679999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.65  E-value=3.4e-15  Score=118.21  Aligned_cols=167  Identities=17%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHH----HHHHHHHHHHH----HhC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSL----GNYIAAQDIKQ----DLQ  129 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~----~l~  129 (259)
                      .|+|.||+||||||+|+.||+++|..++..    ++.+|+....+......  .+...    ........+..    ...
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g~~~i~~----gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT----GDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEH----HHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH----HHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            378899999999999999999999888743    33444433222211100  00000    00111222222    223


Q ss_pred             CCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHHHhhccCC--chHHHHH
Q psy16563        130 KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQRLSRRKNF--TLEENEL  206 (259)
Q Consensus       130 ~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~--~~~~~~~  206 (259)
                      ...+++|.|+.+....                  ..+..+ ......++++++|+++.++..+|+..|...  ...+...
T Consensus        81 ~~g~ii~g~pr~~~qa------------------~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~  142 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQA------------------EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALK  142 (190)
T ss_dssp             TTCEEEESCCCSHHHH------------------HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHH
T ss_pred             cCceeecccccchhHH------------------HHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHH
Confidence            4567888776543111                  111111 112355889999999999999999998632  1111111


Q ss_pred             HHHHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        207 KKNAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       207 e~~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      .....|.+.   +.+.|.+.  ..+++||++++ +++|+++|.++|++
T Consensus       143 ~R~~~y~~~~~p~~~~y~~~--~~~~~Id~~~s-~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         143 IRLEAYHTQTTPLVEYYSKR--GIHSAIDASQT-PDVVFASILAAFSK  187 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--TCEEEEETTSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHH
Confidence            111223222   23334322  23688999886 99999999999875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.65  E-value=4.3e-15  Score=116.83  Aligned_cols=169  Identities=17%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHH--HHHHHH----HHHHHHHHHHH----h
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRR--AYYSLG----NYIAAQDIKQD----L  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~i~~~----l  128 (259)
                      |.|+|.|||||||||+|+.||+.++..++..    ++.+++...........  .+....    .......+...    .
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~----gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~   76 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHIST----GDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSD   76 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH----HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeH----HHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccc
Confidence            4599999999999999999999999887742    22333322211111000  000000    01111112221    1


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcc-cccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                      ....+++|.|+.+.....                  .+..+ ......+.++++|+++++.+.+|++.++..+....+++
T Consensus        77 ~~~~~vl~g~p~~~~~~~------------------~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~~e~i~~R~~  138 (182)
T d1s3ga1          77 CDNGFLLDGFPRTVPQAE------------------ALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLE  138 (182)
T ss_dssp             TSSCEEEESCCCSHHHHH------------------HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cccceeeeccccchhHHH------------------HHHHHhhcCCCeeeeccchhhhhhhhhhhhhccchhHHHHHHHH
Confidence            345678887766432221                  11111 11224478899999999999999987764332222222


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ...+....+.+.|.+.  ..+++||++.+ +++|+++|.+.|+..
T Consensus       139 ~y~~~~~~i~~~y~~~--~~~~~Id~~~~-~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         139 VNMNQTAPLLAFYDSK--EVLVNINGQKD-IKDVFKDLDVILQGN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHTT--TCEEEEECSSC-HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHhc
Confidence            2222223344445432  34789999887 999999999999765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.64  E-value=2.4e-15  Score=116.27  Aligned_cols=153  Identities=19%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHH-----HHHHHHHHHHHhCCCcEEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG-----NYIAAQDIKQDLQKQPVVM  135 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~~~~vi~  135 (259)
                      |+|+|++||||||+++.||+.+|..++..    ...+.+..+....    .++...     +......+........+|.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~----d~~ie~~~g~~i~----~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~   74 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDS----DFLIEQKFNQKVS----EIFEQKRENFFREQEQKMADFFSSCEKACI   74 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEH----HHHHHHHHTSCHH----HHHHHHCHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEec----CchhhhHHhhhhh----hHHHhhhhccchhhhhhhchhhhhcccccc
Confidence            88999999999999999999999988742    1112222211110    111111     1111222233334333333


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHH-HHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE-NELKKNAKFRE  214 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~-~~~e~~~~~~~  214 (259)
                      ..              +++. .    ....       +...+.+|||++|++++.+|+..|....+.- ..........+
T Consensus        75 ~~--------------~g~~-~----~~~~-------l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~  128 (161)
T d1viaa_          75 AT--------------GGGF-V----NVSN-------LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYN  128 (161)
T ss_dssp             EC--------------CTTG-G----GSTT-------GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHH
T ss_pred             cc--------------ccch-h----hHHH-------HHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHH
Confidence            21              1111 0    0001       1224579999999999999997765322110 00001222334


Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .....|.+.++   ++||+++.++++++++|.+.|+
T Consensus       129 ~r~~~Y~~~ad---~~Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         129 ERLSKYEQKAN---FILNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             HHHHHHHHHCS---EEEECTTCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHhC
Confidence            44556766654   8899998789999999998874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.63  E-value=7e-15  Score=114.44  Aligned_cols=154  Identities=12%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHH-HHHhccccchHHHHHHHHHHH-----HHHHHHHHHhCCCcEE
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSL-REKFDAHDSLLRRAYYSLGNY-----IAAQDIKQDLQKQPVV  134 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~l~~~~vi  134 (259)
                      |+|.|++||||||+++.||+.+|..++..     +.+ .+..+..  +  ..++....+     ...+.+........++
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~-----D~~ie~~~g~~--i--~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~   75 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDT-----DIFMQHTSGMT--V--ADVVAAEGWPGFRRRESEALQAVATPNRVV   75 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEH-----HHHHHHHHCSC--H--HHHHHHHHHHHHHHHHHHHHHHHCCSSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEeh-----hhhhhhhhhhh--h--hhhhcccchHHHHHHHHHHHHhhcccccee
Confidence            88999999999999999999999998742     221 1122111  1  011111111     1222233333334444


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC-ch----HHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF-TL----EENELKKN  209 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~-~~----~~~~~e~~  209 (259)
                      ...               ++. ...+.....+..       ...+|||++|++++.+|+..|... .+    .....+..
T Consensus        76 ~~~---------------~~~-~~~~~~~~~l~~-------~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~  132 (170)
T d1e6ca_          76 ATG---------------GGM-VLLEQNRQFMRA-------HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEM  132 (170)
T ss_dssp             ECC---------------TTG-GGSHHHHHHHHH-------HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHH
T ss_pred             ccc---------------ccc-hhhhHHHHhhhc-------cceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHH
Confidence            431               010 000111112211       235899999999999999876421 11    11111222


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        210 AKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       210 ~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      .+.++.....|.+.++   ++||++++ +++++++|.+.|+
T Consensus       133 ~~~~~er~~lY~~~a~---~~Id~~~~-~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         133 EAVLREREALYQDVAH---YVVDATQP-PAAIVCELMQTMR  169 (170)
T ss_dssp             HHHHHHHHHHHHHHCS---EEEETTSC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCC---EEEcCCCC-HHHHHHHHHHHcC
Confidence            3344445566766654   88999987 9999999888764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.62  E-value=2.8e-14  Score=113.03  Aligned_cols=165  Identities=18%  Similarity=0.181  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHHH----HHHHHHHHHHHH---
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYSL----GNYIAAQDIKQD---  127 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~---  127 (259)
                      +++.|+|.|||||||||+|+.||+++|..+++.    ++.+++............  ....    ........+...   
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~----gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~   80 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSS----GDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN   80 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEH----HHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcH----HHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhh
Confidence            466699999999999999999999999888743    344554443322111100  0000    001111111111   


Q ss_pred             hCCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHH
Q psy16563        128 LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK  207 (259)
Q Consensus       128 l~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e  207 (259)
                      .....+|+|.|+.+...                  ...+    .....|+.+|+|+||.+++.+|+..|.+.  ...+++
T Consensus        81 ~~~~~~ildGfPr~~~q------------------~~~l----~~~~~~~~vi~L~v~~~~l~~R~~~r~e~--~~kr~~  136 (189)
T d2ak3a1          81 LTQYNWLLDGFPRTLPQ------------------AEAL----DRAYQIDTVINLNVPFEVIKQRLTDRPET--VVKRLK  136 (189)
T ss_dssp             HTTSCEEEESCCCSHHH------------------HHHH----HTTCCCCEEEEEECCHHHHHHHHTGSHHH--HHHHHH
T ss_pred             hhhcCcccccccchhhH------------------HHHh----hhcCcceEEEEEeccchhhhhhcccchHH--HHHHHH
Confidence            23456788877654311                  1111    12245899999999999999999877421  112222


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        208 KNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       208 ~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ...+....+.+.|.+.  ..++.||++.  .++|+++|.+.|....
T Consensus       137 ~y~~~~~~v~~~Y~~~--~~l~~idg~~--~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         137 AYEAQTEPVLEYYRKK--GVLETFSGTE--TNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             HHHHHHHHHHHHHHHH--TCEEEEECSS--HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhc--CCEEEECCCC--hHHHHHHHHHHHHHHh
Confidence            2222333344556543  2367888873  6899999999998754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.62  E-value=3.2e-16  Score=121.90  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=93.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-----SLLRRAYYSLGNYIAAQDIKQDL-QKQPV  133 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l-~~~~v  133 (259)
                      +|+|.|++||||||+++.|++.++..++..++   +.++.......     ....... ..........+.... .+..+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v   81 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHS---DDLWGYIKHGRIDPWLPQSHQQN-RMIMQIAADVAGRYAKEGYFV   81 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCSSSCEEEECT---THHHHTCCSSCCCTTSSSHHHHH-HHHHHHHHHHHHHHHHTSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEecH---HHHHHHHhcCCcccccchhhhHH-HHHHHHHHHHHHHHHhcCCCe
Confidence            59999999999999999999999887654332   23333332211     0000000 000011112222222 57778


Q ss_pred             EEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHH
Q psy16563        134 VMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR  213 (259)
Q Consensus       134 i~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~  213 (259)
                      |+|.....                   .....+.    ....+...+||+|+++++.+|+.+|+......      .+..
T Consensus        82 i~~~~~~~-------------------~~~~~~~----~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~------~~~~  132 (176)
T d1zp6a1          82 ILDGVVRP-------------------DWLPAFT----ALARPLHYIVLRTTAAEAIERCLDRGGDSLSD------PLVV  132 (176)
T ss_dssp             EECSCCCT-------------------TTTHHHH----TTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC------HHHH
T ss_pred             EecccccH-------------------HHHHHHH----hcccccccccCCCCHHHHHHHHHhCCCccccc------hhhH
Confidence            88743211                   1111111    12335678999999999999999998543211      1122


Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       214 ~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+.+.+........++||+++.++++++++|.+.|+..
T Consensus       133 ~~~~~~~~~~~~~~~~~idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         133 ADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             HHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             HHHHHHHhhcccccCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            333333433333345789999988999999999999754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.62  E-value=1.2e-15  Score=130.76  Aligned_cols=157  Identities=12%  Similarity=0.092  Sum_probs=92.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc----cccCCCCc-----hHHHHHHhccccc--------hHHH--HHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS----LKSTPPSS-----IMSLREKFDAHDS--------LLRR--AYYSLGNYI  119 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~----~~~~p~~~-----~~~~~~~~~~~~~--------~~~~--~~~~~~~~~  119 (259)
                      ..|+|+|+.||||||+++.|+++++..    ++.+|...     +..+.+.+++.+.        ....  ..+..|.++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~EPm~yW~~~~g~~~l~~iy~~~~~~~~~~~~~~~~~~~~~~~Q~~f   86 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQSRF   86 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccCCCeEEEeCchhhhcccCCCchHHHHHHhHHhccccccchhhHHHHHHHHHHHH
Confidence            359999999999999999999998753    34555210     0112222222110        0011  112222221


Q ss_pred             ------HHHHHHHHh----------CCCcEEEcCCccchh-hhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEE
Q psy16563        120 ------AAQDIKQDL----------QKQPVVMDRFWHSTS-AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYL  182 (259)
Q Consensus       120 ------~~~~i~~~l----------~~~~vi~Dr~~~s~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L  182 (259)
                            +........          .+..||+||++.+.. .|..+. +..|. .. ...+..+..+....+.||++|||
T Consensus        87 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI~DR~~~Ss~~iF~~~~-y~~G~-ls-~~~~~~l~~~~~~~~~pd~iIyL  163 (333)
T d1p6xa_          87 TTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAAR-YLLGD-MS-MCALMAMVATLPREPQGGNIVVT  163 (333)
T ss_dssp             HHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHH-HHTTS-SC-HHHHHHHHTTCCCCCTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccCCCeEEEECCcccchHHHHHHh-hcCCC-CC-HHHHHHHHHHhcccCCCCEEEEE
Confidence                  112222211          234689999999874 343322 22221 11 22344555566566789999999


Q ss_pred             ecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Q psy16563        183 TVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM  223 (259)
Q Consensus       183 ~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~  223 (259)
                      ++||+++++|+.+||+..+  .   ...+|+++++..|..+
T Consensus       164 d~~pe~~l~RI~~RgR~~E--~---id~~YL~~L~~~Y~~l  199 (333)
T d1p6xa_         164 TLNVEEHIRRLRTRARIGE--Q---IDITLIATLRNVYFML  199 (333)
T ss_dssp             ECCHHHHHHHHHHHSCTTC--C---CCHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHcCCCcC--C---CCHHHHHHHHHHHHHH
Confidence            9999999999999986532  1   1567889999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.1e-15  Score=118.58  Aligned_cols=158  Identities=17%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHh-CCCcEEEcC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMDR  137 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~Dr  137 (259)
                      .|+|.|++||||||+++.||+.++.+++...    ..+.+..+... .+....-...-+....+.+...+ ....++.. 
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D----~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~-   77 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD----VAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSL-   77 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH----HHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEEC-
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeec----cchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccccc-
Confidence            3888899999999999999999999887421    11111221110 01000000000111122233333 23333332 


Q ss_pred             CccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCc--hHHHHHHHHHHHHHH
Q psy16563        138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFT--LEENELKKNAKFREL  215 (259)
Q Consensus       138 ~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~--~~~~~~e~~~~~~~~  215 (259)
                                    |++. . +-   ......    .....+|||+++++++.+|+.++....  ......+....+.+.
T Consensus        78 --------------gg~~-~-~~---~~~~~~----l~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~e  134 (165)
T d2iyva1          78 --------------GGGA-V-TS---PGVRAA----LAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAK  134 (165)
T ss_dssp             --------------CTTG-G-GS---HHHHHH----HTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHH
T ss_pred             --------------cccc-c-cc---cccccc----ccccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHH
Confidence                          1111 0 00   001111    113458999999999999997654210  001111112334445


Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563        216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVEL  248 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~  248 (259)
                      ....|+++++   ++||+++.++++++++|.+.
T Consensus       135 R~~~Y~~~ad---~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         135 RAPLYRRVAT---MRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             HHHHHHHHCS---EEEECSSSCHHHHHHHHHTT
T ss_pred             HHHHHHhhCC---EEEECCCCCHHHHHHHHHhc
Confidence            5567777654   89999998899999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.61  E-value=3.6e-15  Score=115.23  Aligned_cols=166  Identities=19%  Similarity=0.089  Sum_probs=92.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhcccc--chHHHHHHHHHHHHHHHHHHHHh-CCCcEEE
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD--SLLRRAYYSLGNYIAAQDIKQDL-QKQPVVM  135 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~  135 (259)
                      ++|+|+|++||||||+|+.|++.++..++..    ++.+++......  ..................+...+ .+..++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIE----GDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEE----HHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEe----hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            3699999999999999999999998664421    223333222110  00000111111122233333333 5778888


Q ss_pred             cCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q psy16563        136 DRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL  215 (259)
Q Consensus       136 Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~  215 (259)
                      |..+.........               ..+..  .....+..++||++|++++.+|+..|+........   ..   +.
T Consensus        79 d~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~---~~---~~  135 (176)
T d2bdta1          79 DYIAFPDEAEALA---------------QTVQA--KVDDVEIRFIILWTNREELLRRDALRKKDEQMGER---CL---EL  135 (176)
T ss_dssp             ESCCCHHHHHHHH---------------HHHHH--HCSSEEEEEEEEECCHHHHHHHTTTSCC----CGG---GG---HH
T ss_pred             ccccccHHHHHHH---------------HHHHH--hcCCCceEEEeccccHHHHHHHHHhCCCchhhhHH---HH---HH
Confidence            8655432211100               00000  11123566899999999999999999753221111   11   22


Q ss_pred             HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        216 LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       216 ~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+ +......+.++||+++.+++++.+.|.++++.-
T Consensus       136 ~~~-~~~~~~~~~~~id~~~~~~~~~~~~I~~i~~~~  171 (176)
T d2bdta1         136 VEE-FESKGIDERYFYNTSHLQPTNLNDIVKNLKTNP  171 (176)
T ss_dssp             HHH-HHHTTCCTTSEEECSSSCGGGHHHHHHHHHHCG
T ss_pred             HHH-HHhCCCCCeEEEECCCCCHHHHHHHHHHHHhcC
Confidence            222 222333346789999988999999999998763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=3.7e-14  Score=112.59  Aligned_cols=166  Identities=15%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHH--HHHHH----HHHHHHHHHHH----
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRA--YYSLG----NYIAAQDIKQD----  127 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~i~~~----  127 (259)
                      .++|+|.|||||||||+|+.|++.+|..++..    ++.+++............  +....    .......+...    
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~----g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST----GDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAK   83 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCCEEEEH----HHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeeEec----cHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhc
Confidence            45699999999999999999999999888743    334444433322111100  00000    01111222221    


Q ss_pred             h-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc------CCc
Q psy16563        128 L-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK------NFT  200 (259)
Q Consensus       128 l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~------~~~  200 (259)
                      . ....+++|+|+......                     ..+......|..++++++++++..+|...|.      +..
T Consensus        84 ~~~~~g~ildg~pr~~~qa---------------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~  142 (194)
T d3adka_          84 VDTSKGFLIDGYPREVKQG---------------------EEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDN  142 (194)
T ss_dssp             TTTCSCEEEESCCSSHHHH---------------------HHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccceeeeccchhHHH---------------------HHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcch
Confidence            1 35568889876643211                     1111123457889999999999999976543      111


Q ss_pred             hHHHHHHHHHHHHHH---HHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        201 LEENELKKNAKFREL---LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       201 ~~~~~~e~~~~~~~~---~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                       .+........|.+.   +.+.|++.  ..++.||++.+ +++++++|.+.|+.+
T Consensus       143 -~e~i~~R~~~y~~~~~~~~~~y~~~--~~~~~Id~~~s-~~eV~~~I~~~i~~l  193 (194)
T d3adka_         143 -EETIKKRLETYYKATEPVIAFYEKR--GIVRKVNAEGS-VDDVFSQVCTHLDTL  193 (194)
T ss_dssp             -STTHHHHHHHHHHHTHHHHHHHTTT--TCEEEEECCSC-HHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCC-HHHHHHHHHHHHHhc
Confidence             11100111222222   22334321  24788999986 999999999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=1.7e-15  Score=117.52  Aligned_cols=162  Identities=13%  Similarity=0.106  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccc-hHHHH---HHHHHHHHHHHHHHHHh-CCC
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDS-LLRRA---YYSLGNYIAAQDIKQDL-QKQ  131 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~i~~~l-~~~  131 (259)
                      +.+.|+|+|++||||||+++.|++.++...+..    ...+......... .....   ........+.+.+.... .+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   79 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE----VGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRG   79 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE----HHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEe----HHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcc
Confidence            345699999999999999999999987432211    1122211110000 00000   00000112222233333 455


Q ss_pred             cEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHH
Q psy16563        132 PVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK  211 (259)
Q Consensus       132 ~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~  211 (259)
                      .++.+......                       +     ....++.+|||+||++++++|+.+|+.......+.. ..+
T Consensus        80 ~~~~~~~~~~~-----------------------~-----~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~-~~e  130 (174)
T d1y63a_          80 NHVVDYHSSEL-----------------------F-----PERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENM-EAE  130 (174)
T ss_dssp             EEEEECSCCTT-----------------------S-----CGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHH-HHH
T ss_pred             cccccHHHHHH-----------------------H-----HHhcCceEEEEECCHHHHHHHHHhCCCcccccccch-hhh
Confidence            56665332110                       0     012257799999999999999999985432211100 111


Q ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       212 ~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      ..+.....+.+... ..++||+++.+++++.+.|.++++.+
T Consensus       131 ~~~~~~~~~~~~~~-~~~~i~~~~~t~ee~~~~V~~I~~~i  170 (174)
T d1y63a_         131 IQCICEEEARDAYE-DDIVLVRENDTLEQMAATVEEIRERV  170 (174)
T ss_dssp             HTTHHHHHHHHHSC-GGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhhc-CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            12222222222222 33556665556999988888777653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.48  E-value=3.3e-14  Score=109.77  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .|.|+|+|++||||||+|+.|+++++..++.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~   34 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYIN   34 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence            4569999999999999999999999988763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.48  E-value=2.2e-14  Score=111.14  Aligned_cols=158  Identities=15%  Similarity=0.052  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhc-------------cccchHHHHHHHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFD-------------AHDSLLRRAYYSLGNYIAAQDIK  125 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~  125 (259)
                      ++|+|+|++||||||+|+.|++.++..++..+.   +.+.....             ...................+.+.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV---DSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH---HHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec---chhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999876543211   11111110             00000000000000111122222


Q ss_pred             HHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHH
Q psy16563        126 QDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEEN  204 (259)
Q Consensus       126 ~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~  204 (259)
                      ... .+..++.+..+......                 ........  ...+...|||+||++++++|...|++......
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~--~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~  141 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAA-----------------QERWRSFV--GDLDVLWVGVRCDGAVAEGRETARGDRVAGMA  141 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHH-----------------HHHHHHHH--TTCCEEEEEEECCHHHHHHHHHHTSSSCTTHH
T ss_pred             HHHhhccceEEeeeecchHHH-----------------HHHHHHhh--cCCceeecccCCCHHHHHHHHHhcCCcchhhh
Confidence            222 45666666433221100                 00001111  13356689999999999999999975432211


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHH
Q psy16563        205 ELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVEL  248 (259)
Q Consensus       205 ~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~  248 (259)
                               +...+.+.+. ....++||+++.+++|++++|.+.
T Consensus       142 ---------~~~~~~~~~~-~~~dl~IDts~~s~ee~a~~I~~~  175 (178)
T d1qhxa_         142 ---------AKQAYVVHEG-VEYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             ---------HHHTTGGGTT-CCCSEEEETTSSCHHHHHHHHHTT
T ss_pred             ---------hhhhhhhhcC-CCCCEEEECCCCCHHHHHHHHHHh
Confidence                     1111111111 123589999998899999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=6.2e-13  Score=104.94  Aligned_cols=71  Identities=11%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .|.+||++||++++.+|+.+|++.+..+..   ...-.+.-.+.....+   .++|+++++ ++++..+|..+++++.
T Consensus       120 ~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~---~~~~~q~~~~~~~~~a---D~vI~N~~s-~~~l~~~v~~il~~l~  190 (191)
T d1uf9a_         120 LHGTLLVAAPLEERVRRVMARSGLSREEVL---ARERAQMPEEEKRKRA---TWVLENTGS-LEDLERALKAVLAELT  190 (191)
T ss_dssp             SSEEEEECCCHHHHHHHHHTTTCCTTHHHH---HHHTTSCCHHHHHHHC---SEEECCSSH-HHHHHHHHHHHHHSCC
T ss_pred             ceeEEEEecchhhHHHHHHhcccchHHHHH---HHHHhCCCHHHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHcc
Confidence            588999999999999999999755433221   0000010111122222   378999987 9999999999998763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.8e-13  Score=101.43  Aligned_cols=71  Identities=20%  Similarity=0.347  Sum_probs=39.4

Q ss_pred             CEEEEEecCHHHHHHHHhhccCCch---HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        177 DLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       177 dlvI~L~a~~ev~~~Rl~~R~~~~~---~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      ...+++.+++.++..|+..|.....   ..................|.+.++   ++||+++.+++|++++|.+.|+
T Consensus        96 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d---~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_          96 GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCS---EEC-----CHHHHHHHHHHHHC
T ss_pred             ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCC---EEEECCCCCHHHHHHHHHHHhC
Confidence            4689999999999999876542110   000111122333444556665543   8899999889999999999874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=6.1e-12  Score=100.49  Aligned_cols=70  Identities=14%  Similarity=0.166  Sum_probs=41.3

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|+++||++++.+|+..|++.+.++..   ...-.|.-.+.+...+   .++|+++++ +++..+++.+.+..+
T Consensus       124 ~d~ii~v~~~~~~r~~R~~~R~~~s~e~~~---~~~~~Q~~~~~k~~~a---D~vI~N~~~-l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         124 CDRILVVDVSPQTQLARSAQRDNNNFEQIQ---RIMNSQVSQQERLKWA---DDVINNDAE-LAQNLPHLQQKVLEL  193 (205)
T ss_dssp             CSEEEEEECCHHHHHHHHC-----CHHHHH---HHHHHSCCHHHHHHHC---SEEEECCSC-HHHHHHHHHHHHHHH
T ss_pred             hhheeeecchHHHHHHHHHhcCCchHHHHH---HHHHhCCCHHHHHHhC---CEEEECCCC-hHHHHHHHHHHHHHH
Confidence            578999999999999999999765543321   0000111111122222   488999987 888888777777654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.36  E-value=2.5e-13  Score=109.07  Aligned_cols=179  Identities=14%  Similarity=0.046  Sum_probs=92.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc-cccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS-LKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVV  134 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi  134 (259)
                      +.++|.|+|++||||||+|+.|++.+... .+..--..++.+|+.+..+..+....-... ............ .+..||
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~-~~r~~~~a~~~~~~g~~vi  101 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN-IRRIAEVAKLFADSNSIAI  101 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH-HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHH-HHHHHHHHHHHhccCCcee
Confidence            35569999999999999999999887532 111111235677776655433311110000 001111111112 577777


Q ss_pred             EcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q psy16563        135 MDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE  214 (259)
Q Consensus       135 ~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~  214 (259)
                      ++--..........+.            ......+......+.+.|||+||.+++.+|..++.-.......    ...+.
T Consensus       102 v~~i~~~~~~R~~~r~------------i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~----~~~~~  165 (208)
T d1m7ga_         102 TSFISPYRKDRDTARQ------------LHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGV----IKEFT  165 (208)
T ss_dssp             EECCCCCHHHHHHHHH------------HHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTS----SSSCB
T ss_pred             eecccccHHHHHHHHH------------HhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCc----cccee
Confidence            7622111100000000            0000112233445677899999999999996554210000000    00000


Q ss_pred             HHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        215 LLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       215 ~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      .+...|+... .+.++||++..++++.+++|.+.|.+..
T Consensus       166 gvd~~ye~P~-~~dl~Idt~~~s~~e~~~~Ii~~L~~~~  203 (208)
T d1m7ga_         166 GISAPYEAPA-NPEVHVKNYELPVQDAVKQIIDYLDTKG  203 (208)
T ss_dssp             TTTBCCCCCS-SCSEEEECSSSCHHHHHHHHHHHHHHTT
T ss_pred             cccccCCCCC-CCcEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            0111122221 1468999999789999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.35  E-value=1.3e-11  Score=99.26  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+|+|.||+||||||+|+.||++||..+++
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~is   33 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD   33 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence            459999999999999999999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.8e-13  Score=103.45  Aligned_cols=172  Identities=12%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCcEEEc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQPVVMD  136 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~vi~D  136 (259)
                      .++|.|+|++||||||+|+.|+++++..+........+.++..+........... ..........+.... .+..++.+
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDR-EENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHH-HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHH-HHHHHHHHHHHHHHHhcCCccccc
Confidence            3459999999999999999999999877654322222233322222111100000 000011122222222 45566665


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~  216 (259)
                      .........                  .....+..........+++.++..++.+|..+|........    ....+...
T Consensus        98 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~  155 (195)
T d1x6va3          98 FISPYTQDR------------------NNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG----EIKGFTGI  155 (195)
T ss_dssp             CCCCCHHHH------------------HHHHHHHHTTTCCEEEEEECC--------------------------------
T ss_pred             cccchHHHH------------------HHHHHHHhccccccccccchhheeeehhhccchhhhhhhhh----hhhhhhhh
Confidence            332211111                  11111111122234466777777777777655432111110    11111222


Q ss_pred             HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ...|+.. ..+.++|||++.++++++++|.+.|++..
T Consensus       156 ~~~~e~~-~~~dl~IdT~~~s~ee~~~~Il~~l~~~~  191 (195)
T d1x6va3         156 DSEYEKP-EAPELVLKTDSCDVNDCVQQVVELLQERD  191 (195)
T ss_dssp             --CCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred             ccccCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHCc
Confidence            2222222 12358999999889999999999998753

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.34  E-value=2.3e-12  Score=97.48  Aligned_cols=117  Identities=14%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh-cccccCCCCchHHHHHHh-cccc----chHHHHHHHHHHHHHHHHHHHHh----
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK-ASLKSTPPSSIMSLREKF-DAHD----SLLRRAYYSLGNYIAAQDIKQDL----  128 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~-~~~~~~p~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~i~~~l----  128 (259)
                      .+|+|.|++||||||+|+.|.+... ..++.     .+.++... ....    ....... ..........+...+    
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   76 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN-----RDDYRQSIMAHEERDEYKYTKKKE-GIVTGMQFDTAKSILYGGD   76 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC-----HHHHHHHHTTSCCGGGCCCCHHHH-HHHHHHHHHHHHHHHTSCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEec-----hHHHHHHHhcccchhhhhhhhhhh-HHHHHHHHHHHHHHHHhhc
Confidence            3589999999999999998876543 33332     12333222 1110    0000000 000111122222322    


Q ss_pred             CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCC
Q psy16563        129 QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF  199 (259)
Q Consensus       129 ~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~  199 (259)
                      .+..+|.|.......                  ....+..++.....+..+|||++|++++.+|+.+|+..
T Consensus        77 ~~~~vi~d~~~~~~~------------------~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~  129 (152)
T d1ly1a_          77 SVKGVIISDTNLNPE------------------RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK  129 (152)
T ss_dssp             SCCEEEECSCCCSHH------------------HHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG
T ss_pred             cCCCcccccccCCHH------------------HHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCC
Confidence            355678875443221                  11222222333344677999999999999999999743

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.1e-11  Score=97.49  Aligned_cols=70  Identities=19%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL  252 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~  252 (259)
                      .|.+|+++||++++.+|+..|++.++....   .....|.-.......+   .++||++++ ++++.++|.++++.+
T Consensus       125 ~~~iI~V~a~~e~r~~R~~~R~~~~~~~~~---~~~~~Q~~~~~k~~~a---D~vI~N~~~-le~l~~~v~~l~~~~  194 (208)
T d1vhta_         125 ANRVLVVDVSPETQLKRTMQRDDVTREHVE---QILAAQATREARLAVA---DDVIDNNGA-PDAIASDVARLHAHY  194 (208)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHTCCHHHHH---HHHHHSCCHHHHHHHC---SEEEECSSC-TTSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhhhHHHHH---HHHHhCCCHHHHHHhC---CEEEECCCC-HHHHHHHHHHHHHHH
Confidence            577999999999999999999865543221   1111111111112222   388999987 888888887776554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.9e-13  Score=107.38  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +.+|+|+|++||||||+++.|++.++...+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~   31 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEV   31 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhcc
Confidence            456999999999999999999999987644

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.26  E-value=1.4e-12  Score=102.54  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      ...+|+|+|++||||||+|+.|++.++...+
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~   51 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGI   51 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccc
Confidence            3557999999999999999999999886543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.23  E-value=3.8e-11  Score=92.94  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHhCCCcEEEc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL--LRRAYYSLGNYIAAQDIKQDLQKQPVVMD  136 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~~vi~D  136 (259)
                      +.|+|+|++||||||+|+.|+++++..++.+....  .+.+........  .........................++.+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE--FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFID   85 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH--HHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHCSSEEEES
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHH--HhhhhccCCcccccHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            34999999999999999999999998877553211  122211111100  00011111111111111112246678899


Q ss_pred             CCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q psy16563        137 RFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELL  216 (259)
Q Consensus       137 r~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~  216 (259)
                      +....+.++.....  ..    .+........    ...+++.+.+..+......+...+.....       ..++.+.+
T Consensus        86 ~~~~~~~~~~~~~~--~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  148 (192)
T d1lw7a2          86 TDFITTQAFCIQYE--GK----AHPFLDSMIK----EYPFDVTILLKNNTEWVDDGLRSLGSQKQ-------RQQFQQLL  148 (192)
T ss_dssp             SCHHHHHHHHHHHH--SC----CCHHHHHHHH----HSCCSEEEEEECCCC-----------CCS-------HHHHHHHH
T ss_pred             cccHHHHHHHHHhc--CC----chHHHHhhhh----hhhhccccccccccccccchhhhhcchhh-------hHHHHHHH
Confidence            88888777753221  10    0111111111    23356666776665555555544432211       12234455


Q ss_pred             HHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhcccc
Q psy16563        217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLPM  254 (259)
Q Consensus       217 ~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~~  254 (259)
                      .+.+.+.. .+++.|++ + +.++..+.|.+.|+.+..
T Consensus       149 ~~~l~~~~-~~~i~i~~-~-~~~e~~~~i~~~I~~ll~  183 (192)
T d1lw7a2         149 KKLLDKYK-VPYIEIES-P-SYLDRYNQVKAVIEKVLN  183 (192)
T ss_dssp             HHHHHGGG-CCCEEEEC-S-SHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCC-CCEEEeCC-C-CHHHHHHHHHHHHHHHHC
Confidence            55555553 45677775 3 388999999999877543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.23  E-value=4.7e-12  Score=97.82  Aligned_cols=31  Identities=16%  Similarity=0.133  Sum_probs=26.9

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      ..+|.|+|++||||||+|+.|+++|+..++.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~~~~~~   36 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLNQQGGR   36 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            3459999999999999999999999876553

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.9e-10  Score=91.94  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      .|+|+|.||+||||||+|+.|++++|..++++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iSt   34 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDS   34 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECH
Confidence            57899999999999999999999999988853

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.9e-11  Score=93.90  Aligned_cols=104  Identities=16%  Similarity=0.057  Sum_probs=66.7

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHh-CCCc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-QKQP  132 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~  132 (259)
                      ....+.+|++.|++||||||+++.|+..++..++..     +.++    .             .....+.++..+ .|..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~-----D~~~----~-------------~~~~~~~~~~~l~~g~~   67 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR-----DTLG----S-------------WQRCVSSCQAALRQGKR   67 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEH-----HHHC----S-------------HHHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEch-----HHHH----H-------------HHHHHHHHHHHHHCCCC
Confidence            334566899999999999999999988777655532     1111    0             011223333444 6889


Q ss_pred             EEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       133 vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                      ||+|.......                  ....+..+++....+-.+|||++|.+++.+|...|.
T Consensus        68 vIiD~t~~~~~------------------~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~  114 (172)
T d1yj5a2          68 VVIDNTNPDVP------------------SRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE  114 (172)
T ss_dssp             EEEESCCCSHH------------------HHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred             ceeeCcCCCHH------------------HHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhc
Confidence            99996544321                  122223333333445568999999999999999885

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=1.5e-08  Score=70.54  Aligned_cols=159  Identities=24%  Similarity=0.302  Sum_probs=95.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhCCCcEEEcCCc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFW  139 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~vi~Dr~~  139 (259)
                      +|.++||+.|=|||++..|.+.+..+.+...  +++ +   .            ...+..+.+....+.....||.|||+
T Consensus         2 liilegpdccfkstvaaklskelkypiikgs--sfe-l---a------------ksgneklfehfnkladednviidrfv   63 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS--SFE-L---A------------KSGNEKLFEHFNKLADEDNVIIDRFV   63 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECC--CHH-H---H------------HHCHHHHHHHHHHHTTCCSEEEESCH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCc--hhh-h---h------------hccCHHHHHHHHhhccccceeeehhh
Confidence            5999999999999999999999987765321  111 0   0            01112233333344467899999999


Q ss_pred             cchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Q psy16563        140 HSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI  219 (259)
Q Consensus       140 ~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~  219 (259)
                      ++++.|...-  .   +..+ -+..++.-.-.....-.-++||.++|.++.+|++-||++-.+..       ....+.+.
T Consensus        64 ysnlvyakkf--k---dysi-lterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegk-------didsilel  130 (164)
T d2axpa1          64 YSNLVYAKKF--K---DYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGK-------DIDSILEL  130 (164)
T ss_dssp             HHHHHHTTTB--S---SCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSS-------HHHHHHHH
T ss_pred             hhhhHHHhhc--c---ccee-hhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccC-------CHHHHHHH
Confidence            9998885310  0   0111 11222211111111223489999999999999999986422111       12234445


Q ss_pred             HHhc-CC--CCeEEEeCCCCCHhhHHHHHHHHH
Q psy16563        220 YRNM-NN--PELVFVDNSEKSVHESSNDIVELI  249 (259)
Q Consensus       220 y~~~-~~--~~~~vID~s~~~~eev~~~I~~~l  249 (259)
                      |++. .+  -..+.-|+..=+-+|++.+|.-++
T Consensus       131 yrevmsnaglhtyswdtgqwssdeiakdiiflv  163 (164)
T d2axpa1         131 YREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             HHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceeeecccCCcchHHhhhheeEee
Confidence            5554 12  235667888766899999987654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=4.6e-10  Score=87.91  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=40.5

Q ss_pred             CCEEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhc---CCCC-eEEEeCCCCCHhhHHHHHHHHHhc
Q psy16563        176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM---NNPE-LVFVDNSEKSVHESSNDIVELIHN  251 (259)
Q Consensus       176 pdlvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~---~~~~-~~vID~s~~~~eev~~~I~~~l~~  251 (259)
                      +..++++..+.+++.+|+.+|+..+..+.  +      +++.....++   .... .++|.++  +++++.++|.++|..
T Consensus       115 ~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I--~------~Rl~~~~~e~~~~~~~~fd~vI~N~--dle~a~~~l~~iI~~  184 (186)
T d1gkya_         115 ARFLFIAPPSVEDLKKRLEGRGTETEESI--N------KRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHSCSCHHHH--H------HHHHHHHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHHT
T ss_pred             ceEEEecCCcHHHHHHHHHhhccchhHHH--H------HHHHHHHHHHHhhhhcCCCEEEECc--CHHHHHHHHHHHHHh
Confidence            55677888999999999999986544321  1      1111111111   1111 2555544  389999999998853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=9.6e-10  Score=85.59  Aligned_cols=24  Identities=21%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +|+|.||+||||||+++.|.+.+.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            499999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=3.3e-09  Score=83.22  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |+|.||+||||||+++.|++.++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCc
Confidence            8899999999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.1e-08  Score=81.29  Aligned_cols=157  Identities=19%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc-------cccCCCCc------------hHHHHHHhccccchHHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS-------LKSTPPSS------------IMSLREKFDAHDSLLRRAYYSLGNYI  119 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~-------~~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (259)
                      .+|+|.||+||||||+.+.|.+.....       +...|+.+            -+.+.++...+..+ ..+.+.-..|.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~fl-E~~~~~g~~YG   81 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL-EHAEVFGNYYG   81 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE-EEEEETTEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhhe-eEEEECCceec
Confidence            359999999999999999999886421       12223211            12344333332110 00000000000


Q ss_pred             -HHHHHHHHh-CCCcEEEcCCccchhhhhhhhhhccccCCCCCcchhhhhcccccCCCCCEEEEEecCHHHHHHHHhhcc
Q psy16563        120 -AAQDIKQDL-QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRK  197 (259)
Q Consensus       120 -~~~~i~~~l-~~~~vi~Dr~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~pdlvI~L~a~~ev~~~Rl~~R~  197 (259)
                       ....+...+ +|..+++|--+..                     ...+...   .+.+-.++++-.+.+++.+|+.+|+
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g---------------------~~~lk~~---~~~~~~ifi~pps~~~l~~RL~~Rg  137 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQG---------------------AQQIRQK---MPHARSIFILPPSKIELDRRLRGRG  137 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHH---------------------HHHHHHH---CTTCEEEEEECSSHHHHHHHHHTTS
T ss_pred             cccchHHHHHhcCCceeecCcHHH---------------------HHHHHhh---hcccceeeeeccchHHHHHHHHhcC
Confidence             012333433 5788888732221                     1111111   1223335556677888999999998


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhcCCC-C-eEEEeCCCCCHhhHHHHHHHHHh
Q psy16563        198 NFTLEENELKKNAKFRELLTTIYRNMNNP-E-LVFVDNSEKSVHESSNDIVELIH  250 (259)
Q Consensus       198 ~~~~~~~~~e~~~~~~~~~~~~y~~~~~~-~-~~vID~s~~~~eev~~~I~~~l~  250 (259)
                      ..+....        ..++..+..++... . .++|.++  +++++.+++.++|.
T Consensus       138 ~~~~~~i--------~~Rl~~a~~E~~~~~~fD~vIvNd--dl~~a~~el~~iI~  182 (205)
T d1s96a_         138 QDSEEVI--------AKRMAQAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIR  182 (205)
T ss_dssp             CSCHHHH--------HHHHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHH
T ss_pred             CchHHHH--------HHHHHHHHHHHHHHhCCCEEEECc--CHHHHHHHHHHHHH
Confidence            6543321        12222233333211 1 2444444  38999999999985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=4.1e-08  Score=77.21  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=33.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCCCCchHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF  101 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p~~~~~~~~~~~  101 (259)
                      .+|++.|+|||||||+|+.|++.++..+...+.-+.+.+|...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~   45 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM   45 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhh
Confidence            4699999999999999999999998776655444445555544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.54  E-value=5.7e-09  Score=86.65  Aligned_cols=29  Identities=28%  Similarity=0.488  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.|+|+|.|++||||||+++.|++.++..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            47899999999999999999999988754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=7.3e-08  Score=80.82  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+.+|+|.|++||||||+|+.|+..+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            356799999999999999999999885

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.8e-07  Score=68.23  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=26.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .|+|+|+|++||||||+++.|++++....
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            58899999999999999999999887653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.17  E-value=3.4e-06  Score=68.34  Aligned_cols=29  Identities=14%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .|.|.|||||||||+|+.||..++..++.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~~~~~   62 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQGNVIV   62 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            49999999999999999999999876654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=1.6e-06  Score=76.22  Aligned_cols=51  Identities=22%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      +++|+|+|.... .....+..+++   |.+.||+|||||.+|+.||+.++.+++.
T Consensus        29 av~nhyrR~~~~-~~~~~ei~ksN---ILliGPTGvGKTlLAr~LAk~l~VPFv~   79 (443)
T d1g41a_          29 ALRNRWRRMQLQ-EPLRHEVTPKN---ILMIGPTGVGKTEIARRLAKLANAPFIK   79 (443)
T ss_dssp             HHHHHHHHHHSC-TTTTTTCCCCC---EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHhhcc-ccccccccccc---EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            888999876421 12223455555   9999999999999999999999988753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.95  E-value=2.6e-06  Score=64.74  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=23.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      -|+|+||+||||||+++.++..++..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            39999999999999999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.88  E-value=9e-07  Score=71.60  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             HHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         37 NIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..|+....++++.|..+.+|.+  ++|.|++||||||+++.|...+.
T Consensus         9 f~Y~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_           9 FAYDDSEQILRDISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             ECSSSSSCSEEEEEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EECCCCCceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHHhhC
Confidence            3455555577788888999988  99999999999999999988654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.82  E-value=8.2e-06  Score=65.93  Aligned_cols=67  Identities=15%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             cccccccccccHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563          3 SKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++|=.+++...-+.+..+++. +       .-+.+..+..         ...+.+.  |.|.||+|||||++++.||..+
T Consensus         4 ~~~~~~~~i~~~~~i~~i~~~-~-------~~~~~~~~~~---------~~~p~~~--vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_           4 ASYIMNGIIKWGDPVTRVLDD-G-------ELLVQQTKNS---------DRTPLVS--VLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             TTTCTTCCCCCSHHHHHHHHH-H-------HHHHHHHHHC---------SSCSEEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhccCCcCcCHHHHHHHHH-H-------HHHHHHHhcc---------CCCCCeE--EEEECcCCCCHHHHHHHHhhcc
Confidence            567778887766888888887 2       1112211111         0111112  8999999999999999999999


Q ss_pred             hccccc
Q psy16563         83 KASLKS   88 (259)
Q Consensus        83 ~~~~~~   88 (259)
                      +..++.
T Consensus        65 ~~~~~~   70 (246)
T d1d2na_          65 NFPFIK   70 (246)
T ss_dssp             TCSEEE
T ss_pred             cccccc
Confidence            987653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=2.2e-06  Score=68.62  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|.++.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        14 ~~l~~isl~i~~Gei--~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          14 VVSKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence            356677788899887  99999999999999999987654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.5e-05  Score=63.88  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+.++.+.|.||+|+||||+++.||+.++..++.
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            3445679999999999999999999999977553

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.6e-06  Score=69.20  Aligned_cols=47  Identities=13%  Similarity=0.052  Sum_probs=37.0

Q ss_pred             HHHHhhhcc--ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         35 LLNIYSRIN--ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        35 ~~~~~~~~~--~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +...|+..+  .++++.|..+.+|..  ++|.|++||||||++++|...+.
T Consensus        17 vsf~Y~~~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          17 VSFAYPNRPDVLVLQGLTFTLRPGEV--TALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEECCTTSTTCCSEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCCEeEeceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcccC
Confidence            334555432  367778888999988  99999999999999999987654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.76  E-value=2.4e-06  Score=68.40  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=31.2

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+++.|..+.+|.+  ++|.|++||||||+++.|+...
T Consensus        20 al~~isl~i~~Ge~--~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          20 ALKNVNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEeceEEEEcCCCE--EEEECCCCCCcchhhHhccCCC
Confidence            46677788999988  9999999999999999987754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.76  E-value=6.3e-06  Score=65.98  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=27.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      .+|+|+|+.||||||+|+.|++.+|..++.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEc
Confidence            469999999999999999999999887664

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=3e-06  Score=68.35  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=34.0

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.++++.|..+.+|..  |+|.|++||||||++++|...+.
T Consensus        16 ~~vL~~isl~i~~Ge~--vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          16 PVILDNINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             CEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cceEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence            3467778888999988  99999999999999999988765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.8e-06  Score=68.35  Aligned_cols=36  Identities=19%  Similarity=0.012  Sum_probs=31.3

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++++.|..+.+|.+  ++|.|++||||||+++.|+..+
T Consensus        20 al~~vsl~i~~Ge~--~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEEEEECSSCE--EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHcCCc
Confidence            46677788999987  9999999999999999997754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=4.8e-06  Score=68.68  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         43 NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        43 ~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..++++.|..+.+|..  ++|.|++||||||+++.|+..+.
T Consensus        49 ~pvL~~isl~i~~Ge~--vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEM--LAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CEEEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CeEEeCeEEEEcCCCE--EEEECCCCChHHHHHHHHhCCCc
Confidence            4578888889999998  99999999999999999988654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=1.1e-05  Score=60.82  Aligned_cols=28  Identities=11%  Similarity=0.011  Sum_probs=25.0

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ++|+|+|.+||||||+++.|..+|....
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999988654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.72  E-value=3.2e-06  Score=68.70  Aligned_cols=47  Identities=15%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             HHHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         35 LLNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        35 ~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +...|+.. ..++++.|..+.+|.+  |+|.|++||||||++++|...+.
T Consensus        19 vsf~Y~~~~~~~L~~isl~i~~Ge~--iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          19 VTFTYPGREVPALRNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEECSSSSSCCSEEEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEeCCCCCceeeceEEEEcCCCE--EEEECCCCChHHHHHHHHhcccC
Confidence            33445443 3467778888999988  99999999999999999987654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.72  E-value=3.4e-06  Score=67.85  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|.+..+|.+  ++|.||+||||||+++.|+..+.
T Consensus        17 ~al~~vsl~i~~Ge~--~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          17 TAVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEcceeeEEcCCCE--EEEECCCCChHHHHHHHHhcCCC
Confidence            356677788899887  99999999999999999987644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.70  E-value=3.5e-06  Score=66.06  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++++.|..+.+|..  ++|.||+||||||+.+.|+..+.
T Consensus        16 vl~~is~~i~~Gei--~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          16 VLERITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             EEEEEEEEEETTCC--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEeceEEEEcCCCE--EEEECCCCChHHHHHHHHhcccc
Confidence            56677778899988  99999999999999999977543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.70  E-value=3.2e-06  Score=67.46  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=32.1

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+++.|.++.+|.+  ++|.||+||||||+++.|+..+.
T Consensus        15 aL~~vs~~i~~Ge~--~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          15 SLDNLSLKVESGEY--FVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEEEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHhcCcC
Confidence            46677788899887  99999999999999999988654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.68  E-value=3e-06  Score=68.18  Aligned_cols=38  Identities=16%  Similarity=0.037  Sum_probs=33.0

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ..+++.|.+..+|.+  ++|.||+||||||+++.|+..+.
T Consensus        19 ~aL~~vsl~i~~Ge~--~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          19 VALDNVNINIENGER--FGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEEEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEeceEEEECCCCE--EEEECCCCCcHHHHHHHHHcCcC
Confidence            457778888999988  99999999999999999988543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=2.2e-05  Score=65.46  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.||||||||.+|+.||+.++..++
T Consensus        52 iLl~GPpG~GKT~lAkalA~~~~~~~~   78 (309)
T d1ofha_          52 ILMIGPTGVGKTEIARRLAKLANAPFI   78 (309)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHhhccccchh
Confidence            889999999999999999999887643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=4.6e-06  Score=66.96  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|.+..+|.+  ++|.||+||||||+.+.|+..+.
T Consensus        20 ~al~~vsl~v~~Ge~--~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          20 TAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEcceeEEECCCCE--EEEECCCCChHHHHHHHHHcCCC
Confidence            356667788899887  99999999999999999988654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=1.2e-05  Score=63.97  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=25.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      -+.|.||+|+||||+|+.|++.++..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            3899999999999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.1e-05  Score=60.96  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |.|+|++||||||+++.+++.+...
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHC
Confidence            9999999999999999999998643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=6.6e-06  Score=66.92  Aligned_cols=37  Identities=22%  Similarity=0.073  Sum_probs=32.2

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .++++.|..+.+|..  ++|.|++||||||+++.|+..+
T Consensus        16 ~al~~vs~~i~~GEi--~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          16 EVLKGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcceeeEEcCCCE--EEEECCCCCcHHHHHHHHHcCc
Confidence            466778888999987  9999999999999999998644

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=2.6e-05  Score=62.12  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      +-+.|.||+|+||||+|+.+++.++..+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~   64 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLR   64 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            33899999999999999999999987754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.54  E-value=5.4e-06  Score=67.34  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             HHHhhhc-cccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         36 LNIYSRI-NETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        36 ~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ...|+.. ..++++.|..+.+|..  ++|.|++||||||++++|...+.
T Consensus        23 sf~Y~~~~~~vL~~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          23 SFQYNDNEAPILKDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EECSCSSSCCSEEEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEeCCCCCcceeceEEEEcCCCE--EEEECCCCCcHHHHHHHHHhcCC
Confidence            3345433 3467788888999988  99999999999999999987554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.52  E-value=8e-06  Score=65.75  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             HHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         34 ELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++...|+. ..++++.|....+|..  ++|.||+||||||+.+.|+..+.
T Consensus        11 ~l~k~yg~-~~al~~vs~~i~~Gei--~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          11 SLHVYYGA-IHAIKGIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEEETT-EEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             eEEEEECC-EEEEeeeeEEECCCCE--EEEECCCCCcHHHHHHHHhCCCC
Confidence            34444543 3466778888999987  99999999999999999987654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=1.1e-05  Score=64.45  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             cCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         45 TNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        45 ~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++.|.++.+|..  ++|.|++||||||+.+.|+..
T Consensus        14 ~l~~isl~I~~Gei--~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          14 RLGPLSGEVRAGEI--LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TSCSEEEEEETTCE--EECBCCTTSSHHHHHHHHHTS
T ss_pred             eecCEEEEEcCCCE--EEEECCCCCcHHHHHHHHhCC
Confidence            35556778899988  999999999999999999763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.50  E-value=3.5e-05  Score=61.01  Aligned_cols=28  Identities=29%  Similarity=0.578  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+.+.|.||+|+||||+++.+++.+...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~~   72 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFGE   72 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            4458999999999999999999988754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=5e-05  Score=63.71  Aligned_cols=32  Identities=19%  Similarity=0.074  Sum_probs=27.2

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ..|+.++|+|+|+||+||||+...|..++...
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            44567789999999999999999999887654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.49  E-value=1.2e-05  Score=65.28  Aligned_cols=38  Identities=24%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|....+|..  ++|.||+||||||+++.|+..+.
T Consensus        18 ~aL~~vs~~v~~Gei--~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          18 KALDGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEcceEEEECCCCE--EEEECCCCCcHHHHHHHHHCCCc
Confidence            456778888999887  99999999999999999987654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=1.3e-05  Score=64.38  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=32.8

Q ss_pred             ccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         44 ETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        44 ~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .++++.|.+..+|..  ++|.||+||||||+.+.|+..+.
T Consensus        16 ~vl~~vs~~v~~Gei--~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          16 EILKGISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEccceeEEcCCCE--EEEECCCCCCHHHHHHHHhcCCC
Confidence            467777788898887  99999999999999999988654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=5e-05  Score=59.84  Aligned_cols=27  Identities=26%  Similarity=0.582  Sum_probs=24.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +-+.|.||+|+||||+|+.+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            338899999999999999999998865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00015  Score=60.46  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCC-eEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         14 LVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYP-LIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ...+.+.|++.-..+-..++.+...+.+....+.      .+.++. .+.+.||+|+|||.+|+.||+.++..+
T Consensus        13 l~~l~~~L~~~viGQ~~a~~~v~~~v~~~~~~l~------~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~   80 (315)
T d1r6bx3          13 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLG------HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL   80 (315)
T ss_dssp             HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCS------CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHhCCeecChHHHHHHHHHHHHHHHccCC------CCCCCceEEEEECCCcchhHHHHHHHHhhccCCe
Confidence            4556666666555555666666665544332221      111121 488999999999999999999998654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.0001  Score=62.70  Aligned_cols=74  Identities=22%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             cccHHHHHHHHHhhccCC----hHHHHHHHHHhhhcccc-------CCC--------CCCcccCCCCCeEEEEcCCCCcH
Q psy16563         11 YPSLVSVLSILKSAQYSS----LPEVEELLNIYSRINET-------NDQ--------DSGVGDDRKYPLIVFEGLDGCGK   71 (259)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~ii~~~g~~g~gk   71 (259)
                      .++-.++.+.|++....+    ...+.+++|+++|....       ++.        .+.+..+++   |.+.||+||||
T Consensus         5 ~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~n---iLfiGPTGvGK   81 (364)
T d1um8a_           5 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN---ILLIGPTGSGK   81 (364)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCC---EEEECCTTSSH
T ss_pred             CCCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcc---eeeeCCCCccH
Confidence            456778888888843333    33344455555542100       000        000123333   89999999999


Q ss_pred             HHHHHHHHHHhhcccc
Q psy16563         72 SHTSQTVAKKLKASLK   87 (259)
Q Consensus        72 st~~~~l~~~~~~~~~   87 (259)
                      |-+|+.||+.++..++
T Consensus        82 TElAk~LA~~~~~~~i   97 (364)
T d1um8a_          82 TLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             HHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHhhccccee
Confidence            9999999999876643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.39  E-value=6.7e-05  Score=62.81  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..++..+|+|+|++|+||||+...|.+.+..
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            4455677999999999999999999987643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.4e-05  Score=61.89  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|||||++++.||+.++.+++.
T Consensus        48 iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             EEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999987654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.38  E-value=9.8e-05  Score=59.10  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=23.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ..+.|.||+|+||||+++.|++.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            34999999999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5.8e-05  Score=62.00  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|+|.|++||||||++..|...+.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999998887763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=4.5e-05  Score=61.45  Aligned_cols=28  Identities=25%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|||||++++.|++.++..++.
T Consensus        45 iLl~GppGtGKT~la~aia~~~~~~~~~   72 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEARVPFIT   72 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             EEEecCCCCChhHHHHHHHHHcCCCEEE
Confidence            9999999999999999999999987654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6e-05  Score=57.57  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|.||+|+||+|+++.|.+....
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCCc
Confidence            4999999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.32  E-value=5.5e-05  Score=59.87  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++|+|.|+.||||||+.+.|.+++..
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            36999999999999999999987753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=9.2e-05  Score=58.18  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .+..+.+|++.||+|+||||.+..||.++...
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~   38 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE   38 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            33445579999999999999999999988644

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=8.8e-05  Score=58.55  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=22.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +-+.|.||+|+||||+++.+++.+.
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHc
Confidence            3388999999999999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.25  E-value=0.00011  Score=57.39  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=24.9

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +..+|++.||+|+||||.+..||.++...
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~   33 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL   33 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            34569999999999999999999987643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.21  E-value=7.8e-05  Score=59.56  Aligned_cols=24  Identities=33%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +++|.||+||||||+.+.|+..+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            389999999999999999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00013  Score=57.07  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=24.4

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.+|++.||+|+||||.+..||.++...
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~   36 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQ   36 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4579999999999999999999887644

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00012  Score=57.56  Aligned_cols=27  Identities=30%  Similarity=0.551  Sum_probs=23.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      |-+.|.||+|+||||+++.+++.++..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~~~   62 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIYGK   62 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhhcC
Confidence            337899999999999999999997754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.19  E-value=0.0003  Score=59.68  Aligned_cols=32  Identities=13%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhcccccCC
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP   90 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~~~~~~p   90 (259)
                      +.+++.||||+|||++|..|++.++..++...
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            34999999999999999999999999887653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00018  Score=53.60  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=27.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhccc-ccCCC
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKASL-KSTPP   91 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~~-~~~p~   91 (259)
                      +|++.|.-||||||+++.+++.+|... +.+|.
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPT   67 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT   67 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCT
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccccccCCCc
Confidence            499999999999999999999999753 55554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00012  Score=59.47  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=26.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccccC
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKST   89 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~~   89 (259)
                      |.|.||+|||||++++.+|..++.+++..
T Consensus        44 iLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          44 VLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             EEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            99999999999999999999999886543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.11  E-value=0.00018  Score=56.36  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.+|++.||+|+||||.+..||.++...
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~   39 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKK   39 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4568999999999999999999988654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00014  Score=58.74  Aligned_cols=28  Identities=29%  Similarity=0.339  Sum_probs=25.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      |.|.||+|||||++++.+|..++..++.
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~~~~~~   68 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETGAFFFL   68 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             eEEecCCCCCchHHHHHHHHHhCCeEEE
Confidence            9999999999999999999999987654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00017  Score=57.35  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +-+.|.||+|+||||+++.+++.+..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~~   59 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIFG   59 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhcC
Confidence            34889999999999999999998743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.0007  Score=56.18  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCC-eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         15 VSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYP-LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+.+.|++.-..+-..++.+.+++.+....+.      .+.++. .+.+.||+|+|||.+|+.||+.+
T Consensus        15 ~~l~~~L~~~v~GQ~~ai~~v~~~i~~~~~~l~------~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          15 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLK------DPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCS------CSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCeEeCHHHHHHHHHHHHHHHhcCCC------CCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            345556666556666667777777765543221      112222 47899999999999999999987

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.001  Score=51.29  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=37.9

Q ss_pred             EEEEEecCHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCCHhhHHHHHHHHHhccc
Q psy16563        178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNLP  253 (259)
Q Consensus       178 lvI~L~a~~ev~~~Rl~~R~~~~~~~~~~e~~~~~~~~~~~~y~~~~~~~~~vID~s~~~~eev~~~I~~~l~~~~  253 (259)
                      ++|||..|.-+...|+++|+..+....    ......+....+....+   ++|.++  ++++++++|.++|.+..
T Consensus       121 i~IfI~pps~e~l~~l~kr~~~~~i~~----r~~~~~~~e~~~~~~fd---~vI~Nd--dle~a~~~l~~iI~~~~  187 (199)
T d1kjwa2         121 IAIFIRPRSLENVLEINKRITEEQARK----AFDRATKLEQEFTECFS---AIVEGD--SFEEIYHKVKRVIEDLS  187 (199)
T ss_dssp             EEEEECCSSHHHHHHHCTTSCHHHHHH----HHHHHHHHHHHHGGGCS---EEECCS--SHHHHHHHHHHHHHHHS
T ss_pred             eEEeeccccHHHHHhhhccccHHHHHH----HHHHHHHHHHHhhccCC---EEEECc--CHHHHHHHHHHHHHHhc
Confidence            589998876666667766653221111    11122233333433322   555543  38999999999997653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.88  E-value=0.0011  Score=51.71  Aligned_cols=25  Identities=32%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.|.|++|||||.++..++..+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccC
Confidence            8899999999999999999987654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.87  E-value=0.0003  Score=54.86  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ..+|++.||+|+||||.+..||.++...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~   37 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGK   37 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3468999999999999999999988654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.84  E-value=0.0013  Score=50.75  Aligned_cols=62  Identities=16%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhccccc
Q psy16563         14 LVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS   88 (259)
Q Consensus        14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~~~~   88 (259)
                      -+.+.+.|+-+..+.++=...+..-+.+.++           .+.  |+|.||+++|||+++..|.+.++...+.
T Consensus        22 w~~I~~~l~~q~i~~~~Fl~~l~~~l~~~PK-----------kn~--i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          22 WRPIVQFLRYQQIEFITFLGALKSFLKGTPK-----------KNC--LVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             SHHHHHHHHHTTCCHHHHHHHHHHHHHTCTT-----------CSE--EEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHcCCCC-----------ceE--EEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            4577888888777777777777666654432           234  9999999999999999999999876654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.83  E-value=0.0002  Score=57.48  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++.|.||+|+||||+++.+++.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            3567899999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.00041  Score=53.04  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ....|.|+|.|.+|+||||+.+.|..
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcC
Confidence            33467799999999999999999963

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.61  E-value=0.00064  Score=54.10  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .|+|.|++|+||||+++.+++.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            49999999999999999999988765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00067  Score=52.08  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|.|+|.|++|||||||.+.|...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356999999999999999999753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.46  E-value=0.00078  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|++||||||+.+.|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00072  Score=49.26  Aligned_cols=20  Identities=30%  Similarity=0.590  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+|||||...|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999876

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00084  Score=51.20  Aligned_cols=29  Identities=17%  Similarity=0.093  Sum_probs=24.3

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|..  +.|.|++||||||++..++....
T Consensus        20 i~~G~v--~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          20 IETGSI--TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EETTSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcCCEE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            555655  99999999999999999987643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.39  E-value=0.00099  Score=55.29  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +.+.||||||||.+++.||..++.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCccHHHHHHHHHHHhcC
Confidence            556899999999999999999884

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0019  Score=49.60  Aligned_cols=45  Identities=18%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             cCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         26 YSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ...-.++..+...+.+.           .+++   ++|.|++|+|||+++..||+++..
T Consensus        25 igRd~Ei~~l~~iL~r~-----------~k~n---~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          25 IGRDEEIRRTIQVLQRR-----------TKNN---PVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             CSCHHHHHHHHHHHTSS-----------SSCE---EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcc-----------CCCC---eEEEecCCcccHHHHHHHHHHHHh
Confidence            33445666777666532           2223   899999999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0026  Score=49.22  Aligned_cols=25  Identities=16%  Similarity=0.341  Sum_probs=22.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.|.||+|+||||+++.+++.+...
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~l~~~   51 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRYLLCQ   51 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             EEEECCCCCcHHHHHHHHHHhcccc
Confidence            8999999999999999999988644

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.18  E-value=0.0014  Score=48.05  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|||||||.+.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999998864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0015  Score=51.66  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +.|.||+|+||||+|+.+++.++...
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~l~~~~   62 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKGLNCET   62 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcCcc
Confidence            88999999999999999999987653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.15  E-value=0.00091  Score=55.66  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~   82 (259)
                      |.|.|++|+||||+++.++..|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            9999999999999999999976

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0012  Score=51.81  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .|+++|+|.-||||||+.+.|.+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            5789999999999999999887753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.0015  Score=48.63  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         3 V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0032  Score=50.82  Aligned_cols=45  Identities=18%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             CChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .--.++..+...+.+.           .+++   ++|.|++|+|||++++.||+++...
T Consensus        22 gRd~Ei~~l~~iL~r~-----------~k~n---~lLVG~~GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          22 GREKELERAIQVLCRR-----------RKNN---PLLVGESGVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             SCHHHHHHHHHHHTSS-----------SSCE---EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHhcC-----------ccCC---cEEECCCCCcHHHHHHHHHHHHHhC
Confidence            3345666666666432           2223   8899999999999999999987643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.02  E-value=0.0014  Score=48.88  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+||||||+...|..
T Consensus        16 I~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.02  E-value=0.0016  Score=48.78  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999964

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.96  E-value=0.0017  Score=47.82  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++||||||+.+.|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            89999999999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.94  E-value=0.0019  Score=47.97  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+||||||++..|..
T Consensus        18 I~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999998865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0015  Score=50.99  Aligned_cols=27  Identities=22%  Similarity=0.119  Sum_probs=22.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      +.+|+.  +.|.|++||||||++-.++..
T Consensus        31 i~~G~~--~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSI--TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSE--EEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeE--EEEEcCCCCCHHHHHHHHHHH
Confidence            555555  999999999999999888754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.88  E-value=0.0082  Score=48.28  Aligned_cols=62  Identities=18%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             ccHHHHHHHHHhhccCChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         12 PSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      -+-..+.++|+-+..+...-...+..-+.+.          ..+..+  +.|.||+++||||++..|.+.+|..
T Consensus        70 ~~~~~i~~~l~~q~~~~~~f~~~l~~~L~~~----------~~k~n~--~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_          70 ISSNRIYKILELNGYDPQYAASVFLGWATKK----------FGKRNT--IWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             GGGCHHHHHHHHTTCCHHHHHHHHHHHHTTC----------STTCCE--EEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CChHHHHHHHHHcCcCHHHHHHHHHHHHcCC----------CCccEE--EEEEcCCCCCHHHHHHHHHHHhcch
Confidence            3455677777765555444444444433221          122234  9999999999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.88  E-value=0.0013  Score=54.71  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |+|.|++||||||+++.|...+..
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             EEEEeeccccchHHHHHHhhhccc
Confidence            899999999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.002  Score=50.64  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..+|.|++|+||||+.+.|..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHST
T ss_pred             eEEEECCCCCCHHHHHHhhcc
Confidence            489999999999999998853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.85  E-value=0.0015  Score=49.15  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++++||||+.+.|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999998853

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0021  Score=47.00  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0024  Score=47.57  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +|+|.|.+|+||||+.+.|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            499999999999999999964

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.82  E-value=0.0022  Score=47.95  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.+|+||||+.+.|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999998653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.81  E-value=0.0022  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      |.|.|++|+||||++-.|.+. |..+
T Consensus        17 vl~~G~sG~GKStlal~l~~~-g~~l   41 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQR-GHRL   41 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT-TCEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence            999999999999999998875 5543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.81  E-value=0.0025  Score=49.92  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=24.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +.+|..  +.|.|++|||||+++..++....
T Consensus        23 i~~gsl--~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          23 FFKDSI--ILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             EESSCE--EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcCCeE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            445555  99999999999999999998863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.76  E-value=0.0027  Score=54.25  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +|+|+||+||||||.+..+-+++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcC
Confidence            3999999999999999999998754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.0037  Score=48.01  Aligned_cols=30  Identities=13%  Similarity=-0.006  Sum_probs=25.5

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .++-+.+.|++|+||||+|..|++++....
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~   43 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFP   43 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            345599999999999999999999886543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.73  E-value=0.003  Score=49.55  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=23.3

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ...|..  +.|.|++||||||++-.++...
T Consensus        33 lp~G~~--~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAI--TEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEE--EEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEE--EEEEcCCCCCHHHHHHHHHHHh
Confidence            444555  9999999999999999998765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.72  E-value=0.0021  Score=48.20  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999853

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.0029  Score=46.93  Aligned_cols=20  Identities=25%  Similarity=0.242  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            99999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0031  Score=46.95  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999999988865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.003  Score=46.52  Aligned_cols=20  Identities=35%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.0034  Score=48.09  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+.+.|..
T Consensus         3 V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           3 VLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            99999999999999999876

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.65  E-value=0.0023  Score=48.35  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      |.|.|++|+||||++-.|.++ |..+
T Consensus        18 vli~G~sG~GKS~lal~l~~~-G~~l   42 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINK-NHLF   42 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTT-TCEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHc-CCce
Confidence            999999999999999988775 5443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.64  E-value=0.0034  Score=50.79  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .+|+|.|+.|+||||+|+.+.++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            359999999999999999987763

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.63  E-value=0.0032  Score=46.34  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|++|+||||+...|..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            89999999999999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.63  E-value=0.004  Score=48.75  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=22.6

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .|+|+|.|.+++|||||++.|....+
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcc
Confidence            57799999999999999999976543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.002  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+-|+|.|.+++|||||.+.|..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44599999999999999998843

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0032  Score=49.36  Aligned_cols=28  Identities=18%  Similarity=0.021  Sum_probs=23.4

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +.+|..  +.|.|++|||||+++..++...
T Consensus        34 ip~G~~--~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAI--TEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEE--EEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEE--EEEECCCCCCHHHHHHHHHHHH
Confidence            555555  9999999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0036  Score=46.49  Aligned_cols=20  Identities=20%  Similarity=0.390  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            89999999999999998754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0039  Score=46.20  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.004  Score=46.29  Aligned_cols=20  Identities=25%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+||||||++..+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            89999999999999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.43  E-value=0.0036  Score=46.45  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~   79 (259)
                      -|+|.|.+|+||||+.+.|.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            39999999999999998774

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0039  Score=46.72  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+.+.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            399999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0039  Score=46.88  Aligned_cols=20  Identities=20%  Similarity=0.235  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            89999999999999988753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.42  E-value=0.0037  Score=46.79  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhcccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASLK   87 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~~   87 (259)
                      |.|.|++|+||||++-.|.++ |..++
T Consensus        18 vli~G~sg~GKS~la~~l~~~-g~~li   43 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIKR-GHRLV   43 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            999999999999999888876 55443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0045  Score=46.08  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999988754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0045  Score=45.54  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |++.|.+|+||||+...+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0047  Score=45.82  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.32  E-value=0.0055  Score=49.03  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+|..  ++|.|++|+||||++..++..+
T Consensus        32 ~~~G~l--~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          32 ARGGEV--IMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             BCTTCE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeE--EEEEeCCCCCHHHHHHHHHHhh
Confidence            455655  9999999999999999998754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0048  Score=45.26  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.002  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|.+|+||||+.+.|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.005  Score=45.37  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.005  Score=45.34  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0051  Score=45.32  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.24  E-value=0.0057  Score=47.46  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +..|..  +.|.|++|+||||++..++...-
T Consensus        31 l~~G~l--~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          31 LESQSV--TEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EETTEE--EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             ccCCeE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            445554  99999999999999999998754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0052  Score=46.07  Aligned_cols=20  Identities=20%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+||||||++..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998865

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.00099  Score=50.23  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +.+|.|++||||||+..+|.--++..
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~g~   51 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALIPD   51 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            47889999999999999998776543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0054  Score=45.22  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0055  Score=44.93  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.006  Score=42.79  Aligned_cols=29  Identities=7%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             CeEEEeCCCCCHhhHHHHHHHHHhccccc
Q psy16563        227 ELVFVDNSEKSVHESSNDIVELIHNLPMF  255 (259)
Q Consensus       227 ~~~vID~s~~~~eev~~~I~~~l~~~~~~  255 (259)
                      +.++||++..++++++++|...|+....+
T Consensus        92 pDLvIdT~~~sVee~V~qII~yLee~GfI  120 (122)
T d1g8fa3          92 ADIQLESADEPISHIVQKVVLFLEDNGFF  120 (122)
T ss_dssp             CSEECSSTTCCHHHHHHHHHHHHHHTTSC
T ss_pred             CCeEEECCCCCHHHHHHHHHHHHHHCcCE
Confidence            45899999988999999999999877543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.19  E-value=0.0054  Score=47.31  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +.+|..  +.|.|++|+|||+++..++.
T Consensus        23 i~~G~~--~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRS--TLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSE--EEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeE--EEEEeCCCCCHHHHHHHHHH
Confidence            555555  99999999999999977654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0056  Score=45.11  Aligned_cols=20  Identities=25%  Similarity=0.332  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0058  Score=44.99  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0054  Score=45.32  Aligned_cols=20  Identities=30%  Similarity=0.378  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+...+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999987754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0059  Score=45.18  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+||||||++..+..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.11  E-value=0.0027  Score=50.00  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+|.|++|+||||+.+.|...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            3889999999999999988643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0061  Score=45.03  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.03  E-value=0.0056  Score=45.85  Aligned_cols=20  Identities=20%  Similarity=0.224  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+++|||||.+.|.+
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            99999999999999999964

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0066  Score=45.05  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+|||||+..+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            399999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0067  Score=45.98  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            89999999999999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.96  E-value=0.012  Score=49.75  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         27 SSLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .--.++..+...+.+.           .+++   ++|.|++|+|||+++..||+++-..
T Consensus        26 gr~~ei~~~~~~L~r~-----------~k~n---~llvG~~GvGKtaiv~~la~~i~~~   70 (387)
T d1qvra2          26 GRDEEIRRVIQILLRR-----------TKNN---PVLIGEPGVGKTAIVEGLAQRIVKG   70 (387)
T ss_dssp             SCHHHHHHHHHHHHCS-----------SCCC---CEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcC-----------CCCC---CeEECCCCCCHHHHHHHHHHHHHhC
Confidence            3445666666666432           2233   6788999999999999999986543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0071  Score=44.66  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999987754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.95  E-value=0.0044  Score=46.36  Aligned_cols=20  Identities=35%  Similarity=0.537  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVA   79 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~   79 (259)
                      -|+|.|.+|+||||+.+.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            39999999999999998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.94  E-value=0.0058  Score=48.78  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+++.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            399999999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.011  Score=47.54  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=25.8

Q ss_pred             CCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        55 ~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ++.+++|.+.|--|+||||++..||..+...
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHC
Confidence            3446779999999999999999999987543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0067  Score=44.78  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            89999999999999988754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0083  Score=45.79  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             eEEEEcCC-CCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLD-GCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~-g~gkst~~~~l~~~~~~~   85 (259)
                      .+.|+|.. |+||||++-.||..|...
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~   29 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAA   29 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHC
Confidence            38899995 999999999999998655

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0075  Score=44.50  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+|||++...+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0076  Score=44.81  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999988765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.81  E-value=0.006  Score=49.41  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +-+|.|++||||||+..+|+=.++
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            589999999999999999965443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0084  Score=44.61  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.74  E-value=0.0088  Score=44.15  Aligned_cols=20  Identities=25%  Similarity=0.405  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            99999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0088  Score=44.73  Aligned_cols=20  Identities=20%  Similarity=0.160  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.+..
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0093  Score=43.83  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+|||+++..+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            89999999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.01  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=18.6

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ++.+|.|++|+||||++..+...+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHH
Confidence            459999999999999886554433

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.0095  Score=43.87  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.64  E-value=0.006  Score=45.24  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |++.|.+|+||||+...+..
T Consensus        15 IvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            89999999999999988753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.62  E-value=0.022  Score=45.01  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |.|.|++|+||+++|+.|.+...
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCcCHHHHHHHHHHhcC
Confidence            89999999999999999987543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0093  Score=44.19  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.+|+||||+++.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999988753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.013  Score=46.83  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      ...+|++.|--|+||||++.+||..+...
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~   47 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADM   47 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            35679999999999999999999887644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.029  Score=47.61  Aligned_cols=20  Identities=30%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999963

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.36  E-value=0.006  Score=45.27  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=8.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.36  E-value=0.012  Score=43.41  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |++.|.+|+||||++..+..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88899999999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0069  Score=44.84  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||++..+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.012  Score=44.14  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+...+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            99999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.32  E-value=0.011  Score=44.55  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTV   78 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l   78 (259)
                      |+|.|.+|+||||+...+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999999999

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.013  Score=43.77  Aligned_cols=20  Identities=40%  Similarity=0.554  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+|||+++..+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.014  Score=46.31  Aligned_cols=28  Identities=18%  Similarity=0.150  Sum_probs=22.9

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+|..  +.|.|++|+||||++-.||..+.
T Consensus        27 ~pg~~--~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          27 VAGTV--GALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             ETTSE--EEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            34544  88999999999999999987653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.014  Score=45.90  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .+++|+||+++||||.++.++-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            45999999999999999988764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.014  Score=43.98  Aligned_cols=20  Identities=20%  Similarity=0.160  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+|||++...+..
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999987754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.13  E-value=0.01  Score=42.12  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +....|.+|+|||||+++-.+....+...
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~v   36 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKV   36 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCCE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCcE
Confidence            34588999999999999877666555543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.11  E-value=0.013  Score=45.40  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|.+|+||||+.+.+..
T Consensus         9 illlG~~~vGKTsll~~~~~   28 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            99999999999999998853

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.017  Score=48.60  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +-+|.|++||||||+..+|.=.||
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999964443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.90  E-value=0.014  Score=46.82  Aligned_cols=17  Identities=18%  Similarity=0.220  Sum_probs=13.8

Q ss_pred             EEEEcCCCCcHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQT   77 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~   77 (259)
                      +.|.|++||||||++-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            67889999999987543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.80  E-value=0.018  Score=44.94  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      +++|+||+.+||||+.+.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            5899999999999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.72  E-value=0.019  Score=42.96  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      |+|.|..|+||||+...+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999655

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.019  Score=42.71  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |++.|.+|+||||++..+..
T Consensus         8 i~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            99999999999999987754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.67  E-value=0.019  Score=46.50  Aligned_cols=17  Identities=18%  Similarity=0.307  Sum_probs=14.1

Q ss_pred             EEEEcCCCCcHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQT   77 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~   77 (259)
                      +.|.|++||||||++-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            77889999999987643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.67  E-value=0.024  Score=44.98  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .|+|.|-=|+||||++-+||..|...
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~   28 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAM   28 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            49999999999999999999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.27  E-value=0.025  Score=42.03  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|..|+||||+.+.+..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            89999999999999988754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.62  E-value=0.037  Score=42.47  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=21.8

Q ss_pred             eEEEE-cCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFE-GLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~-g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+|. |--|+||||++..||..+...
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~   29 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQL   29 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhC
Confidence            56766 889999999999999987654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.041  Score=43.89  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      ++.|.|++||||||++-.++.....
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~   80 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQR   80 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHc
Confidence            5999999999999999988887653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.56  E-value=0.04  Score=42.09  Aligned_cols=24  Identities=17%  Similarity=0.093  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |++.|-.++|||||+..|-...+.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHhhh
Confidence            999999999999999999876664

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.28  E-value=0.043  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|..|||||||+..|....|
T Consensus         9 i~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcC
Confidence            99999999999999999977655

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.19  E-value=0.044  Score=42.04  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             eEEEE-cCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFE-GLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~-g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+|. +--|+||||++..||..+...
T Consensus         4 vIav~~~kGGvGKTtia~nLA~~la~~   30 (237)
T d1g3qa_           4 IISIVSGKGGTGKTTVTANLSVALGDR   30 (237)
T ss_dssp             EEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence            58887 678999999999999987654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.09  E-value=0.046  Score=43.68  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|..|+||||++..|...-|
T Consensus         5 v~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcC
Confidence            99999999999999999976544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.94  E-value=0.11  Score=41.61  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CCCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         57 KYPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        57 ~~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      ..|-|+|.|.-+|||||+++.|..
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhC
Confidence            366799999999999999999953

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.041  Score=44.20  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+|+|.|+.++||||+++.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            446999999999999999998753

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.82  E-value=0.1  Score=41.95  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      +|-|+|.|..+|||||+++.|..
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhC
Confidence            57799999999999999999964

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.80  E-value=0.065  Score=43.24  Aligned_cols=23  Identities=22%  Similarity=0.208  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHH
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~   80 (259)
                      .+-|+|.|.|.|||||+-+.|..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC
Confidence            34599999999999999999985

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.77  E-value=0.05  Score=43.51  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      .|+|.|-=|+||||++.+||..|...
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~   29 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEM   29 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            48899999999999999998877643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.56  E-value=0.02  Score=39.95  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=16.3

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHH
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQ   76 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~   76 (259)
                      .+|+.  .+|.+++|||||+++-
T Consensus         5 ~~~~~--~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMT--TVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCE--EEECCCTTSSTTTTHH
T ss_pred             HcCCc--EEEEcCCCCChhHHHH
Confidence            44444  8889999999997763

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.45  E-value=0.061  Score=48.75  Aligned_cols=23  Identities=26%  Similarity=0.574  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|-+|||||+-++.+-+.|.
T Consensus        89 IiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          89 VIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.056  Score=45.70  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      +.|.|++|||||+.++.+...
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            999999999999998766554

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.15  E-value=0.066  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |+|.|-+|||||+-++.+-+.|-.
T Consensus       126 IiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         126 ILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999888753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.072  Score=42.91  Aligned_cols=30  Identities=13%  Similarity=0.051  Sum_probs=25.2

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      +-+|..  ++|.|+.|+||||++..+++....
T Consensus        40 igrGQr--~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          40 IGRGQR--GLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CBTTCE--EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             ccCCCe--eeEeCCCCCCHHHHHHHHHHHHhh
Confidence            555655  999999999999999999987653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.08  E-value=0.057  Score=40.56  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |++.|-..+|||||+..|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            89999999999999999953

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.07  E-value=0.07  Score=48.59  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|-+|||||+-++.+-++|-
T Consensus        94 IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          94 ILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988874

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.66  E-value=0.08  Score=48.15  Aligned_cols=23  Identities=26%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|-+|||||.-++.+-+.+.
T Consensus       128 IiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         128 LLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.63  E-value=0.069  Score=43.38  Aligned_cols=21  Identities=24%  Similarity=0.104  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~   80 (259)
                      -|+|.|.|.+||||+-+.|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            399999999999999999954

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.62  E-value=0.084  Score=39.43  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~   81 (259)
                      ..+.+|+|+|||.++..++..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHH
Confidence            557799999999987777654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.52  E-value=0.048  Score=43.53  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      .|+|.|.|.+||||+++.|...
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEEecCccchhhhhhhhhcc
Confidence            3999999999999999999864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=90.37  E-value=0.087  Score=48.06  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|-+|||||+-++.+-+.+.
T Consensus        97 IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          97 IIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988875

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.24  E-value=0.079  Score=39.61  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +|.|+|+..||||..|+.|+...
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC
Confidence            48899999999999999987543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.67  E-value=0.11  Score=41.43  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKK   81 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~   81 (259)
                      -|+|.|.|.+||||+-+.|...
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            4999999999999999999863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.59  E-value=0.13  Score=40.93  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++.|.|++||||||+|-.++....
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHh
Confidence            599999999999999987776543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.45  E-value=0.12  Score=41.06  Aligned_cols=24  Identities=13%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      ++-|.|++||||||+|-.++....
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHH
Confidence            599999999999999988887654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.27  E-value=0.1  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|-+|||||.-++.+-+.|.
T Consensus       124 IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         124 CLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.25  E-value=0.13  Score=38.86  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |++.|-.++|||||+..|...++
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~~   28 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKILA   28 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999876554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.02  E-value=0.11  Score=39.38  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQTVAK   80 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~   80 (259)
                      |+|.|-..+|||||+..|..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEccCCcHHHHHHHHHh
Confidence            99999999999999999853

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.72  E-value=0.096  Score=39.40  Aligned_cols=17  Identities=12%  Similarity=0.239  Sum_probs=14.8

Q ss_pred             EEEEcCCCCcHHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQT   77 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~   77 (259)
                      +++.+|+|||||+.+..
T Consensus        43 ~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             EEEECSSHHHHHHHHHH
T ss_pred             EEEEcCCCCchhHHHHH
Confidence            88999999999988644

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.69  E-value=0.15  Score=38.53  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      .+|.+++|+|||.++-.++.+++...
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~~~~  113 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELSTPT  113 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSCSCE
T ss_pred             cEEEeCCCCCceehHHhHHHHhcCce
Confidence            56778999999999999888886553

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.40  E-value=0.65  Score=36.96  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=39.8

Q ss_pred             cHHHHHHHHHh-hccC---ChHHHHHHHHHhhhccccCCCCCCcccCCCCCeEEEEcCCCCcHHHHHHHHHHHhhcc
Q psy16563         13 SLVSVLSILKS-AQYS---SLPEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKAS   85 (259)
Q Consensus        13 ~~~~~~~~l~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~g~~g~gkst~~~~l~~~~~~~   85 (259)
                      +|+++.+.|+. +...   .+.++..++..+..           +. .+.++|+|+|..  ||||.+..|+.-|...
T Consensus         2 ~~~e~~~~l~~~~~~~~~~~l~r~~~~l~~lg~-----------P~-~~lkvI~VTGTN--GKtST~~~i~~IL~~~   64 (296)
T d2gc6a2           2 NYTETVAYIHSFPRLAKTGDHRRILTLLHALGN-----------PQ-QQGRYIHVTGTN--GKGSAANAIAHVLEAS   64 (296)
T ss_dssp             CHHHHHHHHHTCCCCC---CCHHHHHHHHHTTC-----------GG-GSSCEEEEECSS--SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCcCCCCCCHHHHHHHHHHcCC-----------ch-hhCCEEEEeccC--cHHHHHHHHHHHHHhc
Confidence            47788888888 2222   34455555555531           11 236789999997  6999999999988654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.33  E-value=0.12  Score=41.03  Aligned_cols=19  Identities=16%  Similarity=0.338  Sum_probs=15.3

Q ss_pred             ccCCCCCeEEEEcCCCCcHHH
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSH   73 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst   73 (259)
                      ..+++.  +++.+++|||||+
T Consensus         6 ~~~~~~--~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRL--TIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCE--EEECCCTTSSTTT
T ss_pred             hhcCCc--EEEEECCCCCHHH
Confidence            445554  8899999999996

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=0.14  Score=41.57  Aligned_cols=16  Identities=50%  Similarity=0.725  Sum_probs=14.4

Q ss_pred             EEEEcCCCCcHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQ   76 (259)
Q Consensus        61 i~~~g~~g~gkst~~~   76 (259)
                      -++.|.+|+|||||..
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            6799999999999874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.94  E-value=0.21  Score=38.36  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |++.|-..+||||++..|....+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCC
Confidence            899999999999999999776664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.21  Score=35.21  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      +-+|.||..|||||-.-..+.++.
T Consensus         4 L~li~GpMfsGKTt~Li~~~~~~~   27 (133)
T d1xbta1           4 IQVILGPMFSGKSTELMRRVRRFQ   27 (133)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEecccCHHHHHHHHHHHHHH
Confidence            367889999999998777766654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.86  E-value=0.21  Score=39.77  Aligned_cols=28  Identities=18%  Similarity=0.107  Sum_probs=23.0

Q ss_pred             ccCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        53 ~~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      .-+|+.  +.|.|++|+|||+++..++...
T Consensus        65 igkGQr--~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          65 YAKGGK--IGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EETTCE--EEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCE--EEeeCCCCCCHHHHHHHHHHHH
Confidence            344444  9999999999999999998764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.22  E-value=0.17  Score=41.24  Aligned_cols=15  Identities=53%  Similarity=0.778  Sum_probs=14.1

Q ss_pred             EEEEcCCCCcHHHHH
Q psy16563         61 IVFEGLDGCGKSHTS   75 (259)
Q Consensus        61 i~~~g~~g~gkst~~   75 (259)
                      -++.|.+|+|||||+
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            679999999999998

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.17  E-value=0.14  Score=41.70  Aligned_cols=16  Identities=50%  Similarity=0.725  Sum_probs=14.4

Q ss_pred             EEEEcCCCCcHHHHHH
Q psy16563         61 IVFEGLDGCGKSHTSQ   76 (259)
Q Consensus        61 i~~~g~~g~gkst~~~   76 (259)
                      -++.|.+|+|||||+.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            7899999999999874

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.13  E-value=0.17  Score=38.97  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +++.+|+|+|||+.+-..+-.+
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHH
T ss_pred             EEEEecCCChHHHHHHHHHHHH
Confidence            7888999999998876665543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.10  E-value=0.25  Score=37.88  Aligned_cols=24  Identities=17%  Similarity=0.088  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |++.|-.++||||++..|-...|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             EEEEecCCCCHHHHHHHHHHHcCC
Confidence            899999999999999988766653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.02  E-value=0.25  Score=38.41  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |++.|-.++||||++..|....|.
T Consensus         9 i~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCC
Confidence            999999999999999999887774

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.26  E-value=0.23  Score=40.86  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      |+|.|..|+||||++..|-...|
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCC
Confidence            99999999999999999976555

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.83  E-value=0.42  Score=33.91  Aligned_cols=25  Identities=24%  Similarity=0.092  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCcHHHHHHHHHHHhh
Q psy16563         59 PLIVFEGLDGCGKSHTSQTVAKKLK   83 (259)
Q Consensus        59 ~ii~~~g~~g~gkst~~~~l~~~~~   83 (259)
                      .+-+|.||..|||||-+-...+++.
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~~   32 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRAK   32 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeccccHHHHHHHHHHHHhh
Confidence            3477899999999998877777654

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=83.28  E-value=0.59  Score=39.31  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      ..|.|.+|||||.++..|.+..+.+.
T Consensus        34 q~l~GltGS~ka~~iA~l~~~~~rp~   59 (413)
T d1t5la1          34 QTLLGATGTGKTFTISNVIAQVNKPT   59 (413)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCCE
T ss_pred             EEEeCCCCcHHHHHHHHHHHHhCCCE
Confidence            78999999999999999999888653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.68  E-value=0.36  Score=37.56  Aligned_cols=24  Identities=29%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhhc
Q psy16563         61 IVFEGLDGCGKSHTSQTVAKKLKA   84 (259)
Q Consensus        61 i~~~g~~g~gkst~~~~l~~~~~~   84 (259)
                      |++.|=.++|||||+..|....|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             EEEEeeCCCCHHHHHHHHHHHcCC
Confidence            999999999999999999776664

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=81.56  E-value=0.5  Score=35.68  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHhhccc
Q psy16563         58 YPLIVFEGLDGCGKSHTSQTVAKKLKASL   86 (259)
Q Consensus        58 ~~ii~~~g~~g~gkst~~~~l~~~~~~~~   86 (259)
                      +++|+|+|..  ||||...+|+.-|....
T Consensus         5 ~~vI~ITGT~--GKTTt~~~l~~iL~~~g   31 (234)
T d1e8ca3           5 LRLVGVTGTN--GKTTTTQLLAQWSQLLG   31 (234)
T ss_dssp             SEEEEEESSS--CHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCC--cHHHHHHHHHHHHHHCC
Confidence            5679999987  89999999999886543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.53  E-value=0.62  Score=32.87  Aligned_cols=23  Identities=17%  Similarity=0.118  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         60 LIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        60 ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      +-++.||..|||||-.-...+++
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHH
Confidence            35789999999999555555544

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=81.45  E-value=1.7  Score=33.29  Aligned_cols=29  Identities=17%  Similarity=-0.048  Sum_probs=23.2

Q ss_pred             cCCCCCeEEEEcCCCCcHHHHHHHHHHHh
Q psy16563         54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL   82 (259)
Q Consensus        54 ~~~~~~ii~~~g~~g~gkst~~~~l~~~~   82 (259)
                      ..+.++...|.|..|||||-++-..+...
T Consensus        72 ~~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          72 CQPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             HSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             hccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            33445668999999999999998887764