Psyllid ID: psy16694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLET
Secondary Structure (PSIPRED)
ccEEEEEcccccccccccccccEEEEccccccccEEccccccccccHHHHHHHHHHcccHHEEcccccccccccEEEEEEccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccEEcccEEccccccHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
GHVLTAVNDAvikngqlddgtdvleflskpesfpvkltftrprmttnEKIFLASMFYPLFaiasqlspepkssgievleadtfkLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADyalknpfyslempircELFDTHLQNLLQQHEktgvtnacgtlet
Flexible Loop (DISEMBL)
ghvltavndavikngqlddgTDVLEflskpesfpvkltftrprMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQqhektgvtnacgtlet
Low Complexity Region (SEG)
GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLET
Disordered region (IsUnstruct)
*****AVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQ********GIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE*************
Disordered Region (DISOPRED)
GHVLTAVNDA********DGTDVLEFLSKPESFPVKLTFT*****TNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKT***********
Disordered Region (DISEMBL)
GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLET
Disordered Region (DISPRO)
GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNAC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q5R9J9	219	Trafficking protein parti	yes	N/A	0.939	0.703	0.603	5e-53
Q9Y296	219	Trafficking protein parti	yes	N/A	0.939	0.703	0.603	5e-53
Q2TBL9	219	Trafficking protein parti	yes	N/A	0.939	0.703	0.597	1e-52
Q9ES56	219	Trafficking protein parti	yes	N/A	0.939	0.703	0.597	2e-52
Q69BT7	219	Trafficking protein parti	yes	N/A	0.939	0.703	0.584	1e-50
Q54UU1	135	Trafficking protein parti	yes	N/A	0.664	0.807	0.527	2e-26
O43041	132	Transport protein particl	yes	N/A	0.652	0.810	0.495	2e-25
Q03784	219	Trafficking protein parti	yes	N/A	0.463	0.347	0.35	8e-10
Q557G3	142	Trafficking protein parti	no	N/A	0.597	0.690	0.356	9e-10
Q2KMM2	145	Trafficking protein parti	no	N/A	0.615	0.696	0.274	4e-06

>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 120/154 (77%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Pongo abelii (taxid: 9601)

>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 120/154 (77%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1

 Score =  205 bits (521), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

May play a role in vesicular transport from endoplasmic reticulum to Golgi. May play a role in dendrite postsynaptic membrane trafficking.

Mus musculus (taxid: 10090)

>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1

 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 118/154 (76%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+     ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGKYTADGKEVLEYPGNSANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 43  RMTTNEKIFLASMFYPLFAIASQLSP-EPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 101
           +++ N  I L S F+ L AIAS LSP    SSGIEV+E + FKL C+QT TG+KF ++ D
Sbjct: 26  KLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIAD 85

Query: 102 TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151
            N   L+ +L  +YELY DY LKNPFY +EM IRC+LFD  L  LL   E
Sbjct: 86  PNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLLGVRE 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 75/107 (70%)

Query: 44  MTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 103
           +T NE + LA   + + AI++Q+SP P SSGI++LEA TF +H  QT TG+KF++  +  
Sbjct: 26  LTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKK 85

Query: 104 QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
            +   L L+K YELY+DY LKNPFY+LEMPI+C+LFD  L+  +  H
Sbjct: 86  TTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 24/100 (24%)

Query: 73  SGIEVLEADTFKLHCYQTLTGVKFMIVGDT-------------------NQSGL-----D 108
           SG+  L  D F +  YQTLTG+KF+ +  +                   + S L     D
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176

Query: 109 LILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
             L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ +++
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 52  LASMFYPLFAIASQLSPEP--KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDL 109
           L  M Y L A  +  SP+     +G    +  T+KLH Y+TL+ +KF+I+ D N   L  
Sbjct: 36  LFGMLYSLKAFITSSSPKKIDDKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRD 95

Query: 110 ILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149
            LKKIY +++ +Y +KNP Y     ++C+ F   L   L+Q
Sbjct: 96  DLKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLKQ 136

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 48  EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
           E   +  M + + +  S++SP     G    +   +KLH Y+T TG+K ++  D     +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93

Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
             +L  IY  LY ++ +KNP   L   ++ ELF + L + ++
Sbjct: 94  RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
66558617	217	PREDICTED: trafficking protein particle	0.963	0.728	0.708	4e-64
380012539	217	PREDICTED: trafficking protein particle	0.963	0.728	0.708	7e-64
322796218	159	hypothetical protein SINV_12511 [Solenop	0.963	0.993	0.696	1e-63
350410142	217	PREDICTED: trafficking protein particle	0.963	0.728	0.696	3e-63
340718883	217	PREDICTED: trafficking protein particle	0.963	0.728	0.696	3e-63
242022136	217	trafficking protein particle complex sub	0.963	0.728	0.721	3e-63
332024033	217	Trafficking protein particle complex sub	0.963	0.728	0.689	8e-63
156543860	217	PREDICTED: trafficking protein particle	0.963	0.728	0.708	8e-63
91081497	217	PREDICTED: similar to AGAP008106-PA [Tri	0.957	0.723	0.713	1e-62
307199208	217	Trafficking protein particle complex sub	0.963	0.728	0.689	1e-62

>gi|66558617|ref|XP_624818.1| PREDICTED: trafficking protein particle complex subunit 4-like [Apis mellifera]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 140/158 (88%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN++ +   +L++G DV+E L +PE+FPV L F+R RMTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAVNNSPVVGRELENGKDVIELLEQPENFPVLLRFSRARMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+ SGIEVLEADTF+LHCYQTLTG+KF++V +  QSG++++LK++YELYAD
Sbjct: 120 AIASQLSPEPRCSGIEVLEADTFRLHCYQTLTGIKFIVVAEPTQSGIEILLKRVYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+T+LQ+LL+  EK+G +N 
Sbjct: 180 YALKNPFYSLEMPIRCELFETNLQSLLENIEKSGASNV 217

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012539|ref|XP_003690337.1| PREDICTED: trafficking protein particle complex subunit 4-like [Apis florea]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 140/158 (88%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN++ +   +L++G DV+E L +PE+FPV L F+R RMTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAVNNSPVIGRELENGKDVIELLEQPENFPVLLRFSRARMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+ SGIEVLEADTF+LHCYQTLTG+KF++V +  QSG++++LK++YELYAD
Sbjct: 120 AIASQLSPEPRCSGIEVLEADTFRLHCYQTLTGIKFIVVAEPTQSGIEILLKRVYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+T+LQ+LL+  EK+G +N 
Sbjct: 180 YALKNPFYSLEMPIRCELFETNLQSLLENIEKSGSSNV 217

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796218|gb|EFZ18794.1| hypothetical protein SINV_12511 [Solenopsis invicta]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 139/158 (87%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN   I   +L+DG D+LE L +PE+FPV L F+R +MTTNEKIFLASMFYPLF
Sbjct: 2   GHVLTAVNGIAITGRELEDGRDILEMLEQPENFPVTLKFSRAKMTTNEKIFLASMFYPLF 61

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+SSGIE+LEADTF+L+C+QTLTG+KFMIV + +Q G++++LK++Y+LYAD
Sbjct: 62  AIASQLSPEPRSSGIEILEADTFRLYCFQTLTGIKFMIVAEPSQPGMEILLKRVYDLYAD 121

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFY+LEMPIRCELF+T+LQ LL+  EK+G++N 
Sbjct: 122 YALKNPFYALEMPIRCELFETNLQTLLETVEKSGISNV 159

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410142|ref|XP_003488960.1| PREDICTED: trafficking protein particle complex subunit 4-like [Bombus impatiens]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 138/158 (87%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN + +   +L++G DV E L +PE+FP+ L F+R RMTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAVNGSPVIGRELENGKDVFELLEQPENFPMSLRFSRARMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+ SGIE+LEADTF+LHCYQTLTG+KF++V +  QSG++++LK++YELYAD
Sbjct: 120 AIASQLSPEPRCSGIEILEADTFRLHCYQTLTGIKFIVVAEPTQSGIEILLKRVYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+T+LQ+LL+  EK+G +N 
Sbjct: 180 YALKNPFYSLEMPIRCELFETNLQSLLENVEKSGASNV 217

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718883|ref|XP_003397892.1| PREDICTED: trafficking protein particle complex subunit 4-like [Bombus terrestris]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 138/158 (87%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN + +   +L++G DV E L +PE+FP+ L F+R RMTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAVNGSPVIGRELENGKDVFELLEQPENFPMSLKFSRARMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+ SGIE+LEADTF+LHCYQTLTG+KF++V +  QSG++++LK++YELYAD
Sbjct: 120 AIASQLSPEPRCSGIEILEADTFRLHCYQTLTGIKFIVVAEPTQSGIEILLKRVYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+T+LQ+LL+  EK+G +N 
Sbjct: 180 YALKNPFYSLEMPIRCELFETNLQSLLENVEKSGASNV 217

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022136|ref|XP_002431497.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis] gi|212516791|gb|EEB18759.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 137/158 (86%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVL AV+   +   QL DG DV E L  P++FP+ LTF RP+MTTNEKIFLASMFYPLF
Sbjct: 60  GHVLLAVDKIPVSGRQLSDGRDVWEILEDPKNFPLSLTFGRPKMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+SSGI+VLEADTFKLHC+QTLTGVKF+ + + +Q+G++ +LKKIYELYAD
Sbjct: 120 AIASQLSPEPRSSGIKVLEADTFKLHCFQTLTGVKFITISEPHQTGMEPLLKKIYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+++LQNLL+Q EKTG++N 
Sbjct: 180 YALKNPFYSLEMPIRCELFESNLQNLLEQVEKTGISNV 217

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024033|gb|EGI64251.1| Trafficking protein particle complex subunit 4 [Acromyrmex echinatior]

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 137/158 (86%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTA N   I   +L+DG D+LE L +PE+FP+ L F+R +MTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAANGIAITGRELEDGRDILEMLEQPENFPITLKFSRAKMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+SSGIE+LEADTF+L+CYQTLTG+KFMIV + +Q G+++ LK++Y+LYAD
Sbjct: 120 AIASQLSPEPRSSGIEILEADTFRLYCYQTLTGIKFMIVAEPSQPGMEIFLKRVYDLYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFY+LEMPIRCELF+T+LQ LL+  EK+G++N 
Sbjct: 180 YALKNPFYALEMPIRCELFETNLQTLLETVEKSGISNV 217

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543860|ref|XP_001608154.1| PREDICTED: trafficking protein particle complex subunit 4-like [Nasonia vitripennis]

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 136/158 (86%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVL+AVN   +   +L+DG DVL+ L  PE+FP+ L F R +MTTNEKIFLASMFYPLF
Sbjct: 60  GHVLSAVNGQPVTGRELEDGKDVLDMLENPENFPITLKFCRSKMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+ SGIEVLEADTF+L+CYQTLTGVKFMIV + +Q G++++ KK+YELYAD
Sbjct: 120 AIASQLSPEPRCSGIEVLEADTFRLYCYQTLTGVKFMIVAEPSQPGMEILTKKVYELYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFYSLEMPIRCELF+THLQ+LL+  EK+G++N 
Sbjct: 180 YALKNPFYSLEMPIRCELFETHLQSLLEAVEKSGISNV 217

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081497|ref|XP_974526.1| PREDICTED: similar to AGAP008106-PA [Tribolium castaneum] gi|270005142|gb|EFA01590.1| hypothetical protein TcasGA2_TC007153 [Tribolium castaneum]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 134/157 (85%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVL A+N   I   QLDDG D  E L   +++P+ L F RP+MTTNEKIFLASMFYPLF
Sbjct: 60  GHVLYAINGLPITGRQLDDGRDAFEVLENKDNYPLNLKFGRPKMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEPKSSGIEVLEADTFKLHC+QTLTGVK M+V D NQ+G++++LK+IYE+YAD
Sbjct: 120 AIASQLSPEPKSSGIEVLEADTFKLHCFQTLTGVKMMVVADRNQAGVEILLKRIYEIYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTN 157
           YALKNPFYSLEMPIRCELFD +L+++L Q EK+G++N
Sbjct: 180 YALKNPFYSLEMPIRCELFDLNLKSILDQLEKSGISN 216

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199208|gb|EFN79895.1| Trafficking protein particle complex subunit 4 [Harpegnathos saltator]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 138/158 (87%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GHVLTAVN   +   +L+DG DVL+ L +PE+FP+ L F+R +MTTNEKIFLASMFYPLF
Sbjct: 60  GHVLTAVNGITVTGRELEDGRDVLDMLEQPENFPITLKFSRAKMTTNEKIFLASMFYPLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AIASQLSPEP+SSGIEVLEADTF+L+C+QTLTG+KFMIV + +Q G++++LK++Y+LYAD
Sbjct: 120 AIASQLSPEPRSSGIEVLEADTFRLYCFQTLTGIKFMIVAEPSQPGMEILLKRVYDLYAD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNA 158
           YALKNPFY+LEMPIRCELF+T+LQ LL+  EK+G+ N 
Sbjct: 180 YALKNPFYALEMPIRCELFETNLQTLLETVEKSGINNV 217

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0260861	219	Trs23 [Drosophila melanogaster	0.957	0.716	0.707	1.5e-58
UNIPROTKB|F1NU38	210	TRAPPC4 "Uncharacterized prote	0.932	0.728	0.625	3.2e-49
UNIPROTKB|F1NXY8	218	TRAPPC4 "Uncharacterized prote	0.932	0.701	0.625	3.2e-49
UNIPROTKB|Q9Y296	219	TRAPPC4 "Trafficking protein p	0.939	0.703	0.603	8.5e-49
UNIPROTKB|Q2TBL9	219	TRAPPC4 "Trafficking protein p	0.939	0.703	0.597	1.8e-48
UNIPROTKB|E2RSA9	219	TRAPPC4 "Uncharacterized prote	0.939	0.703	0.597	1.8e-48
UNIPROTKB|F2Z5G7	219	TRAPPC4 "Uncharacterized prote	0.939	0.703	0.597	1.8e-48
MGI|MGI:1926211	219	Trappc4 "trafficking protein p	0.939	0.703	0.597	2.3e-48
RGD|1302991	219	Trappc4 "trafficking protein p	0.939	0.703	0.584	8.8e-47
ZFIN|ZDB-GENE-040426-1734	219	trappc4 "trafficking protein p	0.932	0.698	0.561	3.4e-45

FB|FBgn0260861 Trs23 [Drosophila melanogaster (taxid:7227)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 111/157 (70%), Positives = 131/157 (83%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GHVL AVN   +    LDDG DV   L  PE++P+ L F+RP+MTTNEKIFLASMFYPLF
Sbjct:    60 GHVLVAVNGMPVNGVTLDDGRDVRTTLDAPENYPINLKFSRPKMTTNEKIFLASMFYPLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AIASQLSPEPKSSGIE+LEADTF LHC+QTLTG+KF+I+ +T  +G+DL+L+K+YELY+D
Sbjct:   120 AIASQLSPEPKSSGIEILEADTFTLHCFQTLTGIKFIIISETGLNGIDLLLRKVYELYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTN 157
             Y LKNPFYSLEMPIRCELFD  LQ LL Q EKTG++N
Sbjct:   180 YVLKNPFYSLEMPIRCELFDNKLQELLAQVEKTGISN 216

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|F1NU38 TRAPPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 97/155 (62%), Positives = 125/155 (80%)

Query:     1 GHVLTAVNDAVIKNGQLD-DGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPL 59
             GH + A+N A + NG+L  DG DVLEFLS P ++PV + F R R+++NEK+ LASMF+ L
Sbjct:    51 GHAVLAINGAEV-NGRLTADGKDVLEFLSNPANYPVSIRFGRHRLSSNEKLMLASMFHSL 109

Query:    60 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYA 119
             FAI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+
Sbjct:   110 FAIGSQLSPEVGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDALLRKIYEIYS 169

Query:   120 DYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             D+ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   170 DFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 204

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1NXY8 TRAPPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 97/155 (62%), Positives = 125/155 (80%)

Query:     1 GHVLTAVNDAVIKNGQLD-DGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPL 59
             GH + A+N A + NG+L  DG DVLEFLS P ++PV + F R R+++NEK+ LASMF+ L
Sbjct:    59 GHAVLAINGAEV-NGRLTADGKDVLEFLSNPANYPVSIRFGRHRLSSNEKLMLASMFHSL 117

Query:    60 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYA 119
             FAI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+
Sbjct:   118 FAIGSQLSPEVGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDALLRKIYEIYS 177

Query:   120 DYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             D+ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   178 DFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 212

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

UNIPROTKB|Q9Y296 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 93/154 (60%), Positives = 120/154 (77%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0016358 "dendrite development" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2TBL9 TRAPPC4 "Trafficking protein particle complex subunit 4" [Bos taurus (taxid:9913)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RSA9 TRAPPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F2Z5G7 TRAPPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

MGI|MGI:1926211 Trappc4 "trafficking protein particle complex 4" [Mus musculus (taxid:10090)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 92/154 (59%), Positives = 120/154 (77%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGMDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0016358 "dendrite development" evidence=IDA

GO:0030008 "TRAPP complex" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045212 "neurotransmitter receptor biosynthetic process" evidence=TAS

RGD|1302991 Trappc4 "trafficking protein particle complex 4" [Rattus norvegicus (taxid:10116)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 90/154 (58%), Positives = 118/154 (76%)

Query:     1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
             GH + A+N   +      DG +VLE+     ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct:    60 GHAVLAINGMDVNGKYTADGKEVLEYPGNSANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query:    61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
             AI SQLSPE  SSGIE+LE DTFKLHC+QTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct:   120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query:   121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct:   180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA;ISO

GO:0016358 "dendrite development" evidence=IEA;ISO

GO:0030008 "TRAPP complex" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IEA;ISO

GO:0045202 "synapse" evidence=ISO

ZFIN|ZDB-GENE-040426-1734 trappc4 "trafficking protein particle complex 4" [Danio rerio (taxid:7955)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 87/155 (56%), Positives = 121/155 (78%)

Query:     1 GHVLTAVNDAVIKNGQLD-DGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPL 59
             GH + ++N   + NG+   +G ++ E+L  P ++PV + F R ++++NEK+ LASMF+ L
Sbjct:    60 GHAVLSINGVDV-NGKFTAEGKEIQEYLRDPANYPVSIRFGRQKLSSNEKLMLASMFHSL 118

Query:    60 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYA 119
             FAI SQLSPE  SSGIE+LE D FKLHC+QTLTG+KF+++ D  QSG+D +L+KIYE+Y+
Sbjct:   119 FAIGSQLSPEVGSSGIEMLETDMFKLHCFQTLTGIKFIVLADPRQSGIDALLRKIYEIYS 178

Query:   120 DYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
             D+ALKNPFYSLEMPIRCELFD +L++ L+  EK G
Sbjct:   179 DFALKNPFYSLEMPIRCELFDQNLKSALEIAEKAG 213

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43041	TRS23_SCHPO	No assigned EC number	0.4953	0.6524	0.8106	yes	N/A
Q9ES56	TPPC4_MOUSE	No assigned EC number	0.5974	0.9390	0.7031	yes	N/A
Q69BT7	TPPC4_RAT	No assigned EC number	0.5844	0.9390	0.7031	yes	N/A
Q9Y296	TPPC4_HUMAN	No assigned EC number	0.6038	0.9390	0.7031	yes	N/A
Q54UU1	TPPC4_DICDI	No assigned EC number	0.5272	0.6646	0.8074	yes	N/A
Q2TBL9	TPPC4_BOVIN	No assigned EC number	0.5974	0.9390	0.7031	yes	N/A
Q5R9J9	TPPC4_PONAB	No assigned EC number	0.6038	0.9390	0.7031	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	3e-54
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	1e-35
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	4e-07
TIGR03916	415	TIGR03916, rSAM_link_UDG, putative DNA modificatio	0.003

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score =  167 bits (425), Expect = 3e-54
 Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 43  RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDT 102
           ++TTNE   LA M + L AI+S+LSP P SSGIE LE DTFKLHC QTLTG+KF++V D 
Sbjct: 27  KLTTNEYKLLAGMLHSLHAISSKLSPLPGSSGIESLETDTFKLHCLQTLTGIKFVLVTDP 86

Query: 103 NQS-GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
                 D +L+K YELY+DY LKNPFYSLEMPIRCELFD  L   ++  
Sbjct: 87  GTGPNRDSLLRKYYELYSDYVLKNPFYSLEMPIRCELFDEKLDQYVRSL 135

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 48/108 (44%), Positives = 64/108 (59%)

Query: 43  RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDT 102
            + +NE + LAS  + + AI +Q  P P SSG  VL    F +  +QT TG KF+ V + 
Sbjct: 27  ELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEK 86

Query: 103 NQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
                   L+KIY LY+DY  KNPFYS EMPI+C LFD HL+ + + H
Sbjct: 87  RTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH 134

Length = 134

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 88  YQTLTGVKFMIVGDT---NQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQ 144
           Y T T +KF+++ D+       +    ++++ELY    + NPFY    PIR   FD  ++
Sbjct: 64  YVTNTHIKFILLHDSSTERDDDIKQFFREVHELYIKTLM-NPFYEPNDPIRSPAFDAKVR 122

Query: 145 NL 146
            L
Sbjct: 123 RL 124

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|188431 TIGR03916, rSAM_link_UDG, putative DNA modification/repair radical SAM protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 97  MIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPI 134
           MI+G T ++    ILK    LY  Y LK  FYS  +P+
Sbjct: 220 MIIGATGETDYQ-ILKVAESLYQKYGLKRVFYSAYVPV 256

This uncharacterized protein of about 400 amino acids in length contains a radical SAM protein in the N-terminal half. Members are present in about twenty percent of prokaryotic genomes, always paired with a member of the conserved hypothetical protein TIGR03915. Roughly forty percent of the members of that family exist as fusions with a uracil-DNA glycosylase-like region, TIGR03914. In DNA, uracil results from deamidation of cytosine, forming U/G mismatches that lead to mutation, and so uracil-DNA glycosylase is a DNA repair enzyme. This indirect connection, and the recurring role or radical SAM protein in modification chemistries, suggest that this protein may act in DNA modification, repair, or both [Unknown function, Enzymes of unknown specificity]. Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3369|consensus	199		100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	100.0
KOG3368|consensus	140		100.0
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.96
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.92
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.74
KOG3444|consensus	121		99.69
KOG3487|consensus	139		99.65
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	94.46
KOG0861|consensus	198		89.1
PF08217	604	DUF1712: Fungal domain of unknown function (DUF171	84.12

>KOG3369|consensus

Probab=100.00  E-value=1.4e-43  Score=282.33  Aligned_cols=144  Identities=61%  Similarity=1.008  Sum_probs=141.2

Q ss_pred             CceEEeeeCeeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEe
Q psy16694          1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEA   80 (164)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t   80 (164)
                      ||.|.+|||++|.|..+.||      ++.+.|+|+.++++.++.++||++.|+|++||+++|++|+||.++++|++.++|
T Consensus        55 ~~~~~~vNg~~v~g~~~~~G------l~~~~~ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~Let  128 (199)
T KOG3369|consen   55 GHLVQAVNGENVNGYILYDG------LSSPRNYPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLET  128 (199)
T ss_pred             hheeeeecccccccceeccc------ccCccccccccccCCCcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEe
Confidence            78999999999999999999      899999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHh
Q psy16694         81 DTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  150 (164)
Q Consensus        81 ~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~  150 (164)
                      ++|++|||+|.||+|||+++++....++.+|++||++|.|||+|||||+++|||||++||.+++.++++.
T Consensus       129 dtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~  198 (199)
T KOG3369|consen  129 DTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA  198 (199)
T ss_pred             ccEEEEEEEccCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998865

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=100.00  E-value=2.6e-37  Score=239.63  Aligned_cols=122  Identities=51%  Similarity=0.860  Sum_probs=93.5

Q ss_pred             hccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCC------CCCCCceeEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694         26 FLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSP------EPKSSGIEVLEADTFKLHCYQTLTGVKFMIV   99 (164)
Q Consensus        26 ~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp------~~~~~g~~~~~t~~ykv~~y~T~TgiKFvli   99 (164)
                      +++++|+.+....  .+++++||.++|+|++|||++|++||+|      .++++|++.++|++||+|||||+||+|||++
T Consensus        14 Iy~~~~~~~~~~~--~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~   91 (142)
T PF04099_consen   14 IYYREWNRSKNEG--QPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLI   91 (142)
T ss_dssp             EEEEETSSSS--E---SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEE
T ss_pred             eeehhhCCCCccc--cCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEE
Confidence            4677888776332  3468999999999999999999999999      3446799999999999999999999999999


Q ss_pred             ecCCchhH-HHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694        100 GDTNQSGL-DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  149 (164)
Q Consensus       100 td~~~~~i-r~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~  149 (164)
                      ||++.+++ +.+++.+|++|+|||+|||||++||||+|++||++|++++++
T Consensus        92 td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   92 TDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             E-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             ecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            99998444 555666679999999999999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3368|consensus

Probab=100.00  E-value=1.7e-33  Score=215.42  Aligned_cols=121  Identities=29%  Similarity=0.524  Sum_probs=113.2

Q ss_pred             hccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch
Q psy16694         26 FLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS  105 (164)
Q Consensus        26 ~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~  105 (164)
                      +++++||+++..-.    .+++|+++++||++||+.|.+||+|.+..+||.++.|+.||+|+||||||+|||++||++..
T Consensus        16 l~y~EW~r~~~s~~----~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~   91 (140)
T KOG3368|consen   16 LFYREWNRTKQSGI----PNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAG   91 (140)
T ss_pred             EEehhcccccccCC----chhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCcc
Confidence            58999999998632    36778999999999999999999999888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH-HHHhhhhcCCCCC--CCCcccchhHHHHHHHHHHHh
Q psy16694        106 GLDLILKKIYE-LYADYALKNPFYS--LEMPIRCELFDTHLQNLLQQH  150 (164)
Q Consensus       106 ~ir~~l~~iy~-lYvdyVlkNPfy~--~~~pI~s~~Fd~~v~~l~~~~  150 (164)
                      ++|++|++||. +||+||++||+|+  +++||+|+.|...++++++..
T Consensus        92 ~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrsl  139 (140)
T KOG3368|consen   92 SIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRSL  139 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhccC
Confidence            99999999995 9999999999999  999999999999999998854

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.96  E-value=8.6e-30  Score=191.39  Aligned_cols=109  Identities=43%  Similarity=0.687  Sum_probs=103.7

Q ss_pred             CCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHh
Q psy16694         41 RPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD  120 (164)
Q Consensus        41 ~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvd  120 (164)
                      +.++++||+++|+|++||+++|+.|++|-++++|++.+.+++|.++.|+|.||+|||++++.+..+.+--++++|++|+|
T Consensus        25 et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t~na~~ql~kiY~lYsd  104 (134)
T COG5122          25 ETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYSLYSD  104 (134)
T ss_pred             ccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999988888887789999999999


Q ss_pred             hhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694        121 YALKNPFYSLEMPIRCELFDTHLQNLLQQ  149 (164)
Q Consensus       121 yVlkNPfy~~~~pI~s~~Fd~~v~~l~~~  149 (164)
                      ||+|||||+++|||+|.+||.+++++++.
T Consensus       105 YV~knPfys~EMPI~c~lFde~lkrm~e~  133 (134)
T COG5122         105 YVTKNPFYSPEMPIQCSLFDEHLKRMFEG  133 (134)
T ss_pred             HhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence            99999999999999999999999998865

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.92  E-value=5e-25  Score=168.44  Aligned_cols=119  Identities=25%  Similarity=0.395  Sum_probs=91.3

Q ss_pred             cCCCCCCeeeeeCCCCCCch----hhHHHhhhhh-cHHHHHhhhCCCCCCCce--eEEEeCCEEEEEEEeCCCeEEEEEe
Q psy16694         28 SKPESFPVKLTFTRPRMTTN----EKIFLASMFY-PLFAIASQLSPEPKSSGI--EVLEADTFKLHCYQTLTGVKFMIVG  100 (164)
Q Consensus        28 ~~~~n~p~~~~~~~~~~~~n----e~l~l~g~l~-SL~~i~~klsp~~~~~g~--~~~~t~~ykv~~y~T~TgiKFvlit  100 (164)
                      -++.|.|++++.-....++.    ..+ +..++| |||.|++++.... .+.+  .++++++|++|||+|+||+||||++
T Consensus         2 Ig~~n~PLy~~~~~~~~~~~~~~~~~l-~~~~~h~sLD~iee~~~~~~-~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~   79 (132)
T PF04628_consen    2 IGPNNNPLYIRSFPSEKESSSSDARHL-YQFIAHSSLDVIEEKLWKSS-SDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH   79 (132)
T ss_dssp             E-TTS-EEEEEEE--ST-CGHHHHHHH-HHHHHHHHHHHHHHCCHCSS-SCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred             CCCCCcceEEEecCCCcccccchHHHH-HHHHHHHHHHHHHHHHhhcc-cccccCceehhhhHHHHhhhccCceeEEEEE
Confidence            36789999997544222222    234 666667 8999999998722 2333  6688999999999999999999999


Q ss_pred             c-----CCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694        101 D-----TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  149 (164)
Q Consensus       101 d-----~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~  149 (164)
                      +     .+++++|++|++||++|++ +++||||.+++||+|+.|+++|+++++|
T Consensus        80 ~~~~~~~~d~~ik~fF~~vh~~Y~~-~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   80 DMSDNSIRDEDIKQFFKEVHELYVK-ALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             CGGG-S--HHHHHHHHHHHHHHHHH-HHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             ecccCCcchHHHHHHHHHHHHHHHH-HccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence            9     3489999999999999999 6789999999999999999999999986

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.74  E-value=1e-17  Score=126.78  Aligned_cols=120  Identities=19%  Similarity=0.290  Sum_probs=90.3

Q ss_pred             CCCCCCeee-eeCC--CCCCchhhHHH-hhhhh-cHHHHHhhhCCCCCCCceeE-EEeCCEEEEEEEeCCCeEEEEEecC
Q psy16694         29 KPESFPVKL-TFTR--PRMTTNEKIFL-ASMFY-PLFAIASQLSPEPKSSGIEV-LEADTFKLHCYQTLTGVKFMIVGDT  102 (164)
Q Consensus        29 ~~~n~p~~~-~~~~--~~~~~ne~l~l-~g~l~-SL~~i~~klsp~~~~~g~~~-~~t~~ykv~~y~T~TgiKFvlitd~  102 (164)
                      ++.+.|++- .++.  ++.+.+....| --++| ||+.+..+.-..+.+ -+.+ =...+.++++|.+|+|+||++++..
T Consensus         9 g~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~-Y~~~~d~f~~l~IsAYi~pSgmkf~~iH~n   87 (136)
T COG5603           9 GEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTS-YFDCLDSFGDLRISAYIMPSGMKFLFIHQN   87 (136)
T ss_pred             ecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhH-HHHHHHhhCCeEEEEEEccCCceEEEEecc
Confidence            445678773 3332  22333333333 13455 899998877665431 1222 2367889999999999999999987


Q ss_pred             C-chhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHh
Q psy16694        103 N-QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  150 (164)
Q Consensus       103 ~-~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~  150 (164)
                      . ..++|.||+++|++|++ .++||||++++||+|+.||.+|+++.|++
T Consensus        88 ~s~~N~rsF~qevHely~k-tLmspfy~~~~pirsqafd~~Vr~~ar~~  135 (136)
T COG5603          88 QSRKNARSFLQEVHELYAK-TLMSPFYEPDEPIRSQAFDDGVREAARVC  135 (136)
T ss_pred             chhhhHHHHHHHHHHHHHH-HhhCcccCCCccccchhhhhhHHHHHHhh
Confidence            5 78999999999999999 67899999999999999999999999875

>KOG3444|consensus

Probab=99.69  E-value=2e-16  Score=118.05  Aligned_cols=100  Identities=22%  Similarity=0.342  Sum_probs=82.3

Q ss_pred             cCCCCCCeeeeeCCCCCCchhhHHHhhhhh-cHHHHHhhhCCCCC----CCc-e--eEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694         28 SKPESFPVKLTFTRPRMTTNEKIFLASMFY-PLFAIASQLSPEPK----SSG-I--EVLEADTFKLHCYQTLTGVKFMIV   99 (164)
Q Consensus        28 ~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~-SL~~i~~klsp~~~----~~g-~--~~~~t~~ykv~~y~T~TgiKFvli   99 (164)
                      .++.|.|++++.-.   +.++.+.++.++| ||+.|.+|++...+    ++. +  .+++|++||+++|.|+|.+|||++
T Consensus         8 ~g~kn~~lyi~s~t---~~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNTkVKFIlv   84 (121)
T KOG3444|consen    8 AGPKNEPLYIESIT---PKEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNTKVKFILV   84 (121)
T ss_pred             EcCCCCccEEEecC---cHHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEeccEEEEEEE
Confidence            46678999988544   5666677777777 99999999964322    111 2  668999999999999999999999


Q ss_pred             ecCC-----chhHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy16694        100 GDTN-----QSGLDLILKKIYELYADYALKNPFYSLE  131 (164)
Q Consensus       100 td~~-----~~~ir~~l~~iy~lYvdyVlkNPfy~~~  131 (164)
                      +|.+     +.++|++||.+|-+|.| +++||||-++
T Consensus        85 vdssd~avreteiRsv~r~~h~l~td-~~~npfy~pg  120 (121)
T KOG3444|consen   85 VDSSDYAVRETEIRSVFRILHLLYTD-LSCNPFYLPG  120 (121)
T ss_pred             EcCCcceehhHHHHHHHHHHHHHHHH-heecceeccC
Confidence            9875     78999999999999999 8999999886

>KOG3487|consensus

Probab=99.65  E-value=5.4e-16  Score=118.64  Aligned_cols=103  Identities=20%  Similarity=0.380  Sum_probs=81.3

Q ss_pred             hhhHHHhhhhh-cHHHHHhhhCCCCCCCce--eEEEeCCEEEEEEEeCCCeEEEEEecCC-chhHHHHHHHHHHHHHhhh
Q psy16694         47 NEKIFLASMFY-PLFAIASQLSPEPKSSGI--EVLEADTFKLHCYQTLTGVKFMIVGDTN-QSGLDLILKKIYELYADYA  122 (164)
Q Consensus        47 ne~l~l~g~l~-SL~~i~~klsp~~~~~g~--~~~~t~~ykv~~y~T~TgiKFvlitd~~-~~~ir~~l~~iy~lYvdyV  122 (164)
                      +...+=.-++| ||+.+.+-.=..+  +.+  ..-..+.+-|++|+|++++||++++..+ +++++.||+++|++|++ .
T Consensus        32 ~~~~LN~FI~HAaLdiVde~~W~~s--nmYLktVDkfne~~VSAyvTas~i~f~mlh~~~~~~~ik~Ffqev~elyik-~  108 (139)
T KOG3487|consen   32 DNRHLNQFIVHAALDIVDELQWTTS--NMYLKTVDKFNELFVSAYVTASHIRFIMLHINRADDNIKLFFQEVHELYIK-T  108 (139)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhcceeEEEEEccCcEEEEEEeeccccccHHHHHHHHHHHHHH-H
Confidence            33333345566 6877766433221  111  2234678999999999999999999987 78999999999999999 5


Q ss_pred             hcCCCCCCCCcccchhHHHHHHHHHHHhhh
Q psy16694        123 LKNPFYSLEMPIRCELFDTHLQNLLQQHEK  152 (164)
Q Consensus       123 lkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~  152 (164)
                      ++||||.+++||+|+.||.+++-+.+++-.
T Consensus       109 lmnpFy~~~dpirs~afd~kv~~~~rkhl~  138 (139)
T KOG3487|consen  109 LMNPFYEINDPIRSPAFDHKVRGLARKHLS  138 (139)
T ss_pred             HhCcccccCCccccHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999998853

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=94.46  E-value=0.42  Score=32.99  Aligned_cols=58  Identities=14%  Similarity=0.259  Sum_probs=45.3

Q ss_pred             HHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHh
Q psy16694         60 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYAD  120 (164)
Q Consensus        60 ~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvd  120 (164)
                      +.|.+|+.|..  ....+++.++|.+|++. ..|+-++++||..-+  -.=.+|++|.+.|..
T Consensus         3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~   62 (83)
T PF13774_consen    3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ   62 (83)
T ss_dssp             HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence            46777887532  25789999999999999 999999999999843  345688999988877

...

>KOG0861|consensus

Probab=89.10  E-value=4.1  Score=33.42  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=57.9

Q ss_pred             cHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCC--chhHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q psy16694         58 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN--QSGLDLILKKIYELYADYALKNPFYSLEMPIR  135 (164)
Q Consensus        58 SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~--~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~  135 (164)
                      -=+.++++..|.    .++++.-++|++|+|.-+.|+--|+++|..  .-..-.+|++|-+-|..   ++|=-+-.-.-+
T Consensus        43 ~sktvaeRt~~g----~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~---k~~~~~W~~~~~  115 (198)
T KOG0861|consen   43 ISKTVAERTGPG----QRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTT---KVPATQWPVGET  115 (198)
T ss_pred             HHHHHHHhcCcc----cccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhh---cCcccccCcCCC
Confidence            346677777663    468899999999999999999999999987  33444577888776644   344311110011


Q ss_pred             chhHHHHHHHHHHHhhhc
Q psy16694        136 CELFDTHLQNLLQQHEKT  153 (164)
Q Consensus       136 s~~Fd~~v~~l~~~~~~~  153 (164)
                      +..=-..++.++.+|+.|
T Consensus       116 ~~~~~~~L~~~l~kyqdP  133 (198)
T KOG0861|consen  116 ADLSYPYLDTLLSKYQDP  133 (198)
T ss_pred             cCCCchhHHHHHHHhcCh
Confidence            112224567777777655

>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown

Probab=84.12  E-value=13  Score=35.36  Aligned_cols=102  Identities=16%  Similarity=0.268  Sum_probs=75.7

Q ss_pred             CCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecC-C--------chhHHHHHHH
Q psy16694         43 RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDT-N--------QSGLDLILKK  113 (164)
Q Consensus        43 ~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~-~--------~~~ir~~l~~  113 (164)
                      ..+.|+++...|+.-+|-.|++..+|..   .-..+.|+.-++-.++--.|.++++..+. .        ...++..|++
T Consensus        29 ~~~~neql~~IGL~qglv~Ft~~Fs~~~---~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~  105 (604)
T PF08217_consen   29 ETSLNEQLRQIGLAQGLVSFTRTFSPDD---PCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQ  105 (604)
T ss_pred             CCCHHHHHHHhhHHHHHHHHHHhcCCCC---cccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHH
Confidence            4678899999999999999999999875   34569999999999999999999887661 1        1236777777


Q ss_pred             HHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694        114 IYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       114 iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~  151 (164)
                      .|+.|.=  ..-||-..-.  .-+.|..+++.+...+-
T Consensus       106 ~Y~~F~L--~hGsfs~~l~--~r~~L~~~L~~F~~~fl  139 (604)
T PF08217_consen  106 AYSMFRL--FHGSFSSLLE--GREKLKDRLEDFFSRFL  139 (604)
T ss_pred             HHHHHHH--HcCCHHHhcc--cHHHHHHHHHHHHHHHH
Confidence            7777754  2345543322  66677777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		2e-54
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		5e-54
3cue_A	219	Crystal Structure Of A Trapp Subassembly Activating		7e-11
2j3t_C	145	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		4e-07
2jsn_A	96	Solution Structure Of The Atypical Pdz-Like Domain		2e-06
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		3e-04
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		4e-04

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/163 (59%), Positives = 125/163 (76%), Gaps = 1/163 (0%)
Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLE 163
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G T   G+LE
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG-TFGPGSLE 221

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score =  206 bits (524), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 120/154 (77%)
Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 219

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 24/100 (24%)
Query: 73  SGIEVLEADTFKLHCYQTLTGVKFMIVGDT-------------------NQSGL-----D 108
           SG+  L  D F +  YQTLTG+KF+ +  +                   + S L     D
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Query: 109 LILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
             L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ +++
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 145

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 48  EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
           E   +  M + + +  S++SP     G    +   +KLH Y+T TG+K ++  D     +
Sbjct: 34  EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
             +L  IY  LY ++ +KNP   L   ++ ELF + L + ++
Sbjct: 94  RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135

>pdb|2JSN|A Chain A, Solution Structure Of The Atypical Pdz-Like Domain Of Synbindin Length = 96

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 1  GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTN 47
          GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+N
Sbjct: 50 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSN 96

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87  CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
            + T   ++F+++ D  Q  G+      +Y+LY  +A+ NPFY    PIR   FD  +Q 
Sbjct: 74  AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
           L ++H
Sbjct: 133 LGKKH 137

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87  CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
            + T   ++F+++ D  Q  G+      +Y+LY  +A+ NPFY    PIR   FD  +Q 
Sbjct: 76  AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 134
Query: 146 LLQQH 150
           L ++H
Sbjct: 135 LGKKH 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	3e-58
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	4e-43
3cue_A	219	Transport protein particle 23 kDa subunit; membran	1e-41
3cue_C	159	Transport protein particle 18 kDa subunit; membran	9e-39
2j3w_A	142	Sedlin, trafficking protein particle complex prote	6e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score =  180 bits (457), Expect = 3e-58
 Identities = 93/154 (60%), Positives = 120/154 (77%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
           GH + A+N   +      DG +VLE+L  P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60  GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
           AI SQLSPE  SSGIE+LE DTFKLHCYQTLTG+KF+++ D  Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179

Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
           +ALKNPFYSLEMPIRCELFD +L+  L+  EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score =  139 bits (351), Expect = 4e-43
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 38  TFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFM 97
                     E   +  M + + +  S++SP     G    +   +KLH Y+T TG+K +
Sbjct: 24  KKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVV 83

Query: 98  IVGDTNQSGLDLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149
           +  D     +  +L  IY  LY ++ +KNP   L   ++ ELF + L + ++ 
Sbjct: 84  MNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRS 136

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score =  137 bits (346), Expect = 1e-41
 Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 1   GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
              LT     + +   +++    + ++    +                   L S     F
Sbjct: 47  ASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRSDTRNGGGNNNKHTNNEKLGSFKGDDF 106

Query: 61  AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ---------------- 104
               +       SG+  L  D F +  YQTLTG+KF+ +  +                  
Sbjct: 107 F--KEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRP 164

Query: 105 --------SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151
                      D  L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ +++  +
Sbjct: 165 KSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score =  128 bits (323), Expect = 9e-39
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 14/123 (11%)

Query: 40  TRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIV 99
              +    +   L  M + L +I  +LS     + I  +    +++H Y T +G+ F+++
Sbjct: 32  INSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLL 91

Query: 100 GDTNQSGLDLILKKIY-ELYADYALKNPFYSLEMP-------------IRCELFDTHLQN 145
            D  Q     +L+ IY  +Y  Y   N     +               I    F + L++
Sbjct: 92  SDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLES 151

Query: 146 LLQ 148
            L 
Sbjct: 152 FLA 154

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 82.3 bits (203), Expect = 6e-21
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 81  DTFKLHCYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELF 139
           + + +  + T   ++F+++ D  Q  G+      +Y+LY  +A+ NPFY    PIR   F
Sbjct: 70  NEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAF 128

Query: 140 DTHLQNLLQQH 150
           D  +Q L ++H
Sbjct: 129 DRKVQFLGKKH 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 24/133 (18%)

Query: 30  PESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEP-------KSSGIEVLEADT 82
            + F  K   +R +     +  L            +L P           SG   +  D 
Sbjct: 123 NQVFA-KYNVSRLQPYLKLRQAL-----------LELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 83  ---FKLHCYQTLTGVKFMIVGDTNQSGLDL-ILKKIYELYADYALKNPFYSLEMPIRCEL 138
              +K+ C      + ++ + + N     L +L+K+             +S  + +R   
Sbjct: 171 CLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 139 FDTHLQNLLQQHE 151
               L+ LL+   
Sbjct: 230 IQAELRRLLKSKP 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.96
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.78
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.42
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.68
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	94.82
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	94.6
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	92.68
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	90.88

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=2.3e-48  Score=319.58  Aligned_cols=159  Identities=58%  Similarity=1.007  Sum_probs=152.8

Q ss_pred             CceEEeeeCeeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEe
Q psy16694          1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEA   80 (164)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t   80 (164)
                      ||+++++||.+|.|++++||+++++++.++.|+|++++...+++++|++++|+|++|||++|++|++|.+++.|+++++|
T Consensus        60 ~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~~l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T  139 (219)
T 2j3t_D           60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLET  139 (219)
T ss_dssp             TCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEE
T ss_pred             cceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999877789999999


Q ss_pred             CCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhhhcCcccCC
Q psy16694         81 DTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNAC  159 (164)
Q Consensus        81 ~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~~  159 (164)
                      ++|++|||+|+||+|||++||++++++|++|++||++|+|||+|||||+++|||+|+.||++|+++++++++.|+...+
T Consensus       140 ~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~~  218 (219)
T 2j3t_D          140 DTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPG  218 (219)
T ss_dssp             SSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTTSCCC---
T ss_pred             CceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhccCccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876543

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=5.7e-38  Score=242.84  Aligned_cols=125  Identities=23%  Similarity=0.447  Sum_probs=112.7

Q ss_pred             ccCCCCCCeeeeeCC----CCCC-chhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEec
Q psy16694         27 LSKPESFPVKLTFTR----PRMT-TNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD  101 (164)
Q Consensus        27 ~~~~~n~p~~~~~~~----~~~~-~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd  101 (164)
                      +-++.+.|++.+--.    ++++ +|+.++++|++|||++|++|++|.++++|+++++|++|++|||+|+||+|||++||
T Consensus         8 Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td   87 (145)
T 2j3t_C            8 LFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTD   87 (145)
T ss_dssp             EECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEEC
T ss_pred             EEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEec
Confidence            345566777754221    2455 88999999999999999999999887889999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHH-HHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694        102 TNQSGLDLILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       102 ~~~~~ir~~l~~iy-~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~  151 (164)
                      ++++++|++|++|| ++|+|||+|||||+++|||+|++||.+|+++++++.
T Consensus        88 ~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~  138 (145)
T 2j3t_C           88 LGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP  138 (145)
T ss_dssp             TTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence            99999999999999 899999999999999999999999999999999886

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=245.22  Aligned_cols=119  Identities=39%  Similarity=0.678  Sum_probs=108.3

Q ss_pred             ccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCC------------------------------------
Q psy16694         27 LSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEP------------------------------------   70 (164)
Q Consensus        27 ~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~------------------------------------   70 (164)
                      ++++|+..      ..++++||+++|+|+||||++|++||+|.+                                    
T Consensus        17 Y~r~~~~~------~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~~~~   90 (219)
T 3cue_A           17 YQRNFTND------EQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRSDTRNGGGNNN   90 (219)
T ss_dssp             EEEECSSC------CCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---------------
T ss_pred             eehhhccC------cCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccccccccccccc
Confidence            55666553      245889999999999999999999999965                                    


Q ss_pred             ------------------------CCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCc----------------------
Q psy16694         71 ------------------------KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ----------------------  104 (164)
Q Consensus        71 ------------------------~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~----------------------  104 (164)
                                              ...|++++.|++|++|||+|+||+||||+||+..                      
T Consensus        91 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l  170 (219)
T 3cue_A           91 KHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNL  170 (219)
T ss_dssp             -------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CH
T ss_pred             ccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccc
Confidence                                    2348999999999999999999999999999987                      


Q ss_pred             --hhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694        105 --SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       105 --~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~  151 (164)
                        +++|++|++||++|||||||||||.++|||+|+.||.+|++++++++
T Consensus       171 ~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~  219 (219)
T 3cue_A          171 AIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ  219 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence              88999999999999999999999999999999999999999999874

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-35  Score=232.57  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=103.9

Q ss_pred             CCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHH-HHHhh
Q psy16694         43 RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYE-LYADY  121 (164)
Q Consensus        43 ~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~-lYvdy  121 (164)
                      +.++|+.++++|++|||++|++|++|.+..+||.+++|++|++|||+|+||+|||++||++++++|++|++||+ +|+||
T Consensus        35 ~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~y  114 (159)
T 3cue_C           35 KQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKY  114 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999887789999999999999999999999999999999999999999996 99999


Q ss_pred             hhcCC-----CCCCC--------CcccchhHHHHHHHHHHHhh
Q psy16694        122 ALKNP-----FYSLE--------MPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       122 VlkNP-----fy~~~--------~pI~s~~Fd~~v~~l~~~~~  151 (164)
                      |+|||     ||.++        |||+|++||.+|+++++++.
T Consensus       115 v~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~  157 (159)
T 3cue_C          115 VSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV  157 (159)
T ss_dssp             HHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred             HHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence            99999     99999        99999999999999998764

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.96  E-value=2.6e-29  Score=193.28  Aligned_cols=122  Identities=20%  Similarity=0.335  Sum_probs=101.0

Q ss_pred             ccCCCCCCeeeeeCC--CCCC-chhhHHHh-hhhhcHHHHHhhhCCCCCCCc---eeEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694         27 LSKPESFPVKLTFTR--PRMT-TNEKIFLA-SMFYPLFAIASQLSPEPKSSG---IEVLEADTFKLHCYQTLTGVKFMIV   99 (164)
Q Consensus        27 ~~~~~n~p~~~~~~~--~~~~-~ne~l~l~-g~l~SL~~i~~klsp~~~~~g---~~~~~t~~ykv~~y~T~TgiKFvli   99 (164)
                      +-++.+.|++.+.-.  ++.+ .++..+++ +++||+..+.+++++.+  +|   ..+..+++|++|||+|+||+|||++
T Consensus        11 Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl~   88 (142)
T 2j3w_A           11 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAFVTAGHMRFIML   88 (142)
T ss_dssp             EECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEEECTTCCEEEEE
T ss_pred             EEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEEEcCCCcEEEEE
Confidence            456778899876322  2222 23444555 88999888888888753  34   3668899999999999999999999


Q ss_pred             ecCC-chhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694        100 GDTN-QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       100 td~~-~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~  151 (164)
                      +|++ ++++|++|++||++|+|||+ ||||+++|||+|+.||++|+++++++.
T Consensus        89 ~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           89 HDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             ESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             eCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence            9995 99999999999999999876 999999999999999999999999984

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.7e-18  Score=136.44  Aligned_cols=105  Identities=13%  Similarity=0.164  Sum_probs=82.1

Q ss_pred             ccCCCCCCeeeeeCCC-CCCchhhHHHhhhhh-cHHHHHhhhCCCCCC---Cce-eEEEeCCEEEEEEE-eCCCeEEEEE
Q psy16694         27 LSKPESFPVKLTFTRP-RMTTNEKIFLASMFY-PLFAIASQLSPEPKS---SGI-EVLEADTFKLHCYQ-TLTGVKFMIV   99 (164)
Q Consensus        27 ~~~~~n~p~~~~~~~~-~~~~ne~l~l~g~l~-SL~~i~~klsp~~~~---~g~-~~~~t~~ykv~~y~-T~TgiKFvli   99 (164)
                      +-++.|.|++++.... ..+.|..+.+..++| |||.|+++++.....   .++ .++.+++|++|||+ |+||+|||++
T Consensus        15 IIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKfVl~   94 (162)
T 3pr6_A           15 LIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKIVIG   94 (162)
T ss_dssp             EECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEEEEE
T ss_pred             EECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEEEEE
Confidence            3477899999986442 234566788888888 899999999532211   123 57889999999998 9999999999


Q ss_pred             ecCC------c--hhHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy16694        100 GDTN------Q--SGLDLILKKIYELYADYALKNPFYSLEM  132 (164)
Q Consensus       100 td~~------~--~~ir~~l~~iy~lYvdyVlkNPfy~~~~  132 (164)
                      +|.+      +  +++|++|+++|++|++ +++||||.+++
T Consensus        95 ~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d  134 (162)
T 3pr6_A           95 FEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD  134 (162)
T ss_dssp             EEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred             EccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence            9863      4  7999999999999999 78999999984

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.42  E-value=0.042  Score=43.04  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             HHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy16694         59 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC  136 (164)
Q Consensus        59 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s  136 (164)
                      .+.+.+++.|.+  ....++..+.|.+| |....|+-|++++|..-+  -.-.+|.+|.+.|..-. .+-.-....|...
T Consensus        38 a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~-~~~~~~~~~~~~~  113 (196)
T 2nut_C           38 AKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSF  113 (196)
T ss_dssp             HHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-TTTTTTCCSTTTT
T ss_pred             HHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhc-cchhccccCCCch
Confidence            466778887622  45688999999999 788899999999998743  34568899987666522 2222112235555


Q ss_pred             hhHHHHHHHHHHHhhhc
Q psy16694        137 ELFDTHLQNLLQQHEKT  153 (164)
Q Consensus       137 ~~Fd~~v~~l~~~~~~~  153 (164)
                      ..|+..+.++++.|+.|
T Consensus       114 ~~f~~~l~~~~~~y~~~  130 (196)
T 2nut_C          114 IEFDTFIQKTKKLYIDS  130 (196)
T ss_dssp             GGGHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHhcCc
Confidence            69999999999999765

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.68  E-value=0.047  Score=41.05  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             cHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q psy16694         58 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIR  135 (164)
Q Consensus        58 SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~  135 (164)
                      --+.|++|+.|    ....+++.++|.+|++....|+-+++++|..-+  -.=.+|++|.+-|..-.   |-.......+
T Consensus        47 ~ar~i~~r~~~----~~R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y---~~~~~~~~~~  119 (144)
T 3bw6_A           47 FAETVASRTGA----GQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAH---PKEEWADVTE  119 (144)
T ss_dssp             HHHHHHHHCCT----TEEEEEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHS---CGGGTTTCSS
T ss_pred             HHHHHHhhCCC----CceEEEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHc---cchhhhhccc
Confidence            45666666644    256889999999999988999999999998733  34457888887666521   1110111111


Q ss_pred             ---chhHHHHHHHHHHHhhhc
Q psy16694        136 ---CELFDTHLQNLLQQHEKT  153 (164)
Q Consensus       136 ---s~~Fd~~v~~l~~~~~~~  153 (164)
                         .-.| ..+++++++|+.|
T Consensus       120 ~~~~~~f-~~l~~~i~kYqdp  139 (144)
T 3bw6_A          120 TNDALKM-KQLDTYISKYQDP  139 (144)
T ss_dssp             CCGGGCC-THHHHHHHHTSCC
T ss_pred             ccCCcch-HHHHHHHHHhCch
Confidence               3345 6777888888765

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=94.82  E-value=0.29  Score=38.23  Aligned_cols=88  Identities=11%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             HHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccchh
Q psy16694         61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRCEL  138 (164)
Q Consensus        61 ~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~  138 (164)
                      .+-+|+.|.   ....++..+.|.+| |..-.|+-|++++|..-+  -.-.||.+|.+-|.... .+.-.....+--+..
T Consensus        32 ~iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~-~~~~~~~~~~~~~~~  106 (189)
T 4b93_A           32 QILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSE  106 (189)
T ss_dssp             HHHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGGGGTCCTTTTHHH
T ss_pred             HHHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhc-cccccccCCccccch
Confidence            344555432   46788999999999 777899999999998733  34557888886665421 111111111123467


Q ss_pred             HHHHHHHHHHHhhhc
Q psy16694        139 FDTHLQNLLQQHEKT  153 (164)
Q Consensus       139 Fd~~v~~l~~~~~~~  153 (164)
                      |+..+++.++.|+.+
T Consensus       107 f~~~l~~~~~~y~d~  121 (189)
T 4b93_A          107 FSSVLAAQLKHHSEN  121 (189)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHhhhcc
Confidence            999999999999865

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=94.60  E-value=0.13  Score=40.86  Aligned_cols=89  Identities=11%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             hcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCC-CCCCc
Q psy16694         57 YPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFY-SLEMP  133 (164)
Q Consensus        57 ~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy-~~~~p  133 (164)
                      +.-+.+++++.|    ....+++.+.|.+|+|....|+-+++++|..-+  -.-.+|.+|.+-|....-.+-+- ....|
T Consensus        43 f~~r~il~r~~~----~~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~  118 (199)
T 3kyq_A           43 FTSQLIVERSAK----GSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT  118 (199)
T ss_dssp             HHHHHHHHTSCT----TEEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT
T ss_pred             HHHHHHHhcCCC----CCeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc
Confidence            456677888655    246889999999999999999999999998744  34567888887666522111110 11122


Q ss_pred             ccchhHHHHHHHHHHHhhhc
Q psy16694        134 IRCELFDTHLQNLLQQHEKT  153 (164)
Q Consensus       134 I~s~~Fd~~v~~l~~~~~~~  153 (164)
                      +   .| ..+++++++|+.|
T Consensus       119 ~---~f-~~l~~~m~~Y~dp  134 (199)
T 3kyq_A          119 I---HY-TALDGHLSRYQNP  134 (199)
T ss_dssp             C---CC-CTHHHHHHHTTSG
T ss_pred             c---cc-HHHHHHHHHhCCc
Confidence            2   35 5677777778755

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=92.68  E-value=0.51  Score=36.50  Aligned_cols=87  Identities=11%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             HHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy16694         59 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC  136 (164)
Q Consensus        59 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s  136 (164)
                      .+.+.+|+.+.   .+...++.++|.+|++. -.|+-|++++|..-+  -.-.||.+|.+-|.+. -.+ -.....|..-
T Consensus        72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~-y~~-~~~~a~pysf  145 (169)
T 2vx8_A           72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTT-YGS-RAQTALPYAM  145 (169)
T ss_dssp             HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHH-HTT-GGGTCCTTTT
T ss_pred             HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHHH-hhh-hhhccCCcch
Confidence            45666666652   45788999999999998 469999999998733  3456788888766652 111 1111122221


Q ss_pred             -hhHHHHHHHHHHHhh
Q psy16694        137 -ELFDTHLQNLLQQHE  151 (164)
Q Consensus       137 -~~Fd~~v~~l~~~~~  151 (164)
                       ..|+..+++..+.++
T Consensus       146 ~~eF~~~Lk~~~~~~~  161 (169)
T 2vx8_A          146 NSEFSSVLAAQLKHHS  161 (169)
T ss_dssp             HHHHHHHHSCC-----
T ss_pred             hHHHHHHHHHHHHHhc
Confidence             356655555555553

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=90.88  E-value=3.6  Score=31.80  Aligned_cols=77  Identities=10%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             CceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcc-cchhHHHHHHHHHHH
Q psy16694         73 SGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPI-RCELFDTHLQNLLQQ  149 (164)
Q Consensus        73 ~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI-~s~~Fd~~v~~l~~~  149 (164)
                      ....+++.+.|.+|+.. -.|+-|++++|..-+  -.-.||.+|.+-|...- .+-. ....|- -+..|...|++.++.
T Consensus        93 ~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~y-g~~~-~ta~pya~~~eF~~~L~~~M~~  169 (173)
T 4afi_A           93 NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRA-QTALPYAMNSEFSSVLAAQLKH  169 (173)
T ss_dssp             SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGGG-GTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHh-chhh-hhccCcchhHHHHHHHHHHHHH
Confidence            45788999999999887 489999999998743  33457778776555421 1111 011111 145799999999998


Q ss_pred             hhh
Q psy16694        150 HEK  152 (164)
Q Consensus       150 ~~~  152 (164)
                      ++.
T Consensus       170 yn~  172 (173)
T 4afi_A          170 HSE  172 (173)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-20

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.3 bits (198), Expect = 1e-20
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 40  TRPRMTTNEKIFLASMF--YPLFAIASQLSPEPKSSGIEVLEA-DTFKLHCYQTLTGVKF 96
              +  + +     + F  +    +  +      +  ++ ++  + + +  + T   ++F
Sbjct: 24  PPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 83

Query: 97  MIVGDT-NQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
           +++ D   + G+      +Y+LY  +A+ NPFY    PIR   FD  +Q L ++H
Sbjct: 84  IMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.96
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	96.35
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	93.52

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.6e-29  Score=191.69  Aligned_cols=124  Identities=19%  Similarity=0.369  Sum_probs=102.9

Q ss_pred             ccCCCCCCeeee-eCCC-C--CCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeE-EEeCCEEEEEEEeCCCeEEEEEec
Q psy16694         27 LSKPESFPVKLT-FTRP-R--MTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEV-LEADTFKLHCYQTLTGVKFMIVGD  101 (164)
Q Consensus        27 ~~~~~n~p~~~~-~~~~-~--~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~-~~t~~ykv~~y~T~TgiKFvlitd  101 (164)
                      +-++.+.|++.+ ++.+ +  .++++.++...++||...|.+++++.....++.. .++++|+||||+|+||+||||+||
T Consensus         9 IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~Kfvl~td   88 (140)
T d2j3wa1           9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHD   88 (140)
T ss_dssp             EECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEEEES
T ss_pred             EEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcEEEEEeC
Confidence            446779999975 3221 1  2345677778899987777777777765566655 679999999999999999999999


Q ss_pred             CC-chhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694        102 TN-QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE  151 (164)
Q Consensus       102 ~~-~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~  151 (164)
                      ++ ++.++.+|+++|++|++||+ ||||.++|||+|+.||++|++++++|-
T Consensus        89 ~~~~~~i~~~~~~v~~lYv~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l  138 (140)
T d2j3wa1          89 VRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL  138 (140)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHHHHHhh-CccCCCCCcccCHHHHHHHHHHHHHHc
Confidence            97 56689999999999999876 999999999999999999999999984

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.003  Score=45.88  Aligned_cols=91  Identities=15%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             hhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCc--hhHHHHHHHHHHHHHhhhhcCCC--CCCC
Q psy16694         56 FYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ--SGLDLILKKIYELYADYALKNPF--YSLE  131 (164)
Q Consensus        56 l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~--~~ir~~l~~iy~lYvdyVlkNPf--y~~~  131 (164)
                      -+.-+.++++..|.    ...+++.++|.+|+|....|+=+++++|..=  .-.=.+|++|.+.|..-   .|=  +..-
T Consensus        41 ~f~sr~i~~Rt~~g----~r~sv~~~~y~~h~yv~~~gl~~l~i~d~~Yp~r~AF~~L~~i~~eF~~~---~~~~~~~~i  113 (140)
T d1ioua_          41 TFFAETVASRTGAG----ERQSIEEGNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVA---HPKEEWADV  113 (140)
T ss_dssp             HHHHHHHHHHCCSS----SEEEEEETTEEEEEECCSSSCEEEEEBCTTSCHHHHHHHHHHHHHHHHHS---SCHHHHTTC
T ss_pred             HHHHHHHhhcCCCC----ceEEEEcCCeEEEEEEeeCCEEEEEEECCCcchHHHHHHHHHHHHHHHHH---cChHhhhhh
Confidence            34667777776553    3788999999999999999999999999872  33345778888666551   221  0000


Q ss_pred             CcccchhHHHHHHHHHHHhhhc
Q psy16694        132 MPIRCELFDTHLQNLLQQHEKT  153 (164)
Q Consensus       132 ~pI~s~~Fd~~v~~l~~~~~~~  153 (164)
                      ..-..+.+-..+++++++|+.|
T Consensus       114 ~~~~~~~~~~~l~~~l~kYQdP  135 (140)
T d1ioua_         114 TETNDALKMKQLDTYISKYQDP  135 (140)
T ss_dssp             SCCCTTTSCHHHHHHHHHTTSS
T ss_pred             hccccccchHHHHHHHHHhCch
Confidence            1112333446688888899887

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.52  E-value=0.76  Score=32.08  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             HHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy16694         59 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC  136 (164)
Q Consensus        59 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s  136 (164)
                      .+.+.+|++|..  ....++..++|.+| |..-.|+-|++++|..-+  -.=.+|.+|-+-|..-- .+=......|..=
T Consensus        37 ak~ll~kl~~~~--~~r~s~~~~~y~fH-y~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y-~~~i~~~~rpy~F  112 (127)
T d1ifqa_          37 AKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSF  112 (127)
T ss_dssp             HHHHHTTCCTTS--CSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-TTTTTTCCSTTTT
T ss_pred             HHHHHHhCCCCC--CCcEEEEECCEEEE-EEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhh-hhhhhcccCCcch
Confidence            345667777653  35688999999999 566799999999998743  33456777775554411 1222223334333


Q ss_pred             hhHHHHHHHHHHHh
Q psy16694        137 ELFDTHLQNLLQQH  150 (164)
Q Consensus       137 ~~Fd~~v~~l~~~~  150 (164)
                      ..||.-+.+.-+.|
T Consensus       113 i~Fd~~iqk~k~~y  126 (127)
T d1ifqa_         113 IEFDTFIQKTKKLY  126 (127)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            46888777765544