Psyllid ID: psy16818

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MFKKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQSQDISQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKLKQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccHHccccccccEEccccccccccccccccccccccccEEEEEcccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHccccccccEcccHHHHHHccccccccccccccccccccccccccEEEEEEEccccccHHcHHHccccccccccHHcccccHHcccccEcHHHHccccccccccccHHHHccccEEEEEcccccccEEEcccccccHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccHccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEcccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfkkrqvkqntrkrqndsesesedETQIVRKEkkiredpnfqkttkqtkaakpqvedsesdesscqvgvsyksrkssardgpsdmgatATLEIETETDKDAQAIYEKSLKINAelkgkeddkVYRGLANYAQYFekkdtaqgnaasgfvrkgpirapanvrstvrwdyqpdickdyketgfcgfgdsckflhdrtdykygwqleqehedgdnknyeipdsdeedhlpfkcyicrnsfkdpvmtkckhyfctkcalehfkktpkcyicqkntfgefRTAEKIVQKLKDagdiktmakdsdsdsdekshdssqkttqsQDISQKVLELNKKLNQAREQQLIDKLadsypirraAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKLKQ
Flexible Loop (DISEMBL)
mfkkrqvkqntrkrqndsesesedetqivrkekkiredpnfqkttkqtkaakpqvedsesdesscqvgvsyksrkssardgpsdmGATATleietetdkdaqAIYEKSLKinaelkgkeddkvYRGLANYAQYfekkdtaqgnaasgfvrkgpirapanvrstvrwdYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKlkdagdiktmakdsdsdsdekshdssqkttqsqdiSQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNKSkqltedtikenlskqnvdKLGEKLEAYLKNIRDqlekklkq
Low Complexity Region (SEG)
MFKKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFqkttkqtkaakPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKTMAKdsdsdsdekshdssQKTTQSQDISQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKLKQ
Disordered region (IsUnstruct)
**************************************************************************************************************I*********DKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQL**********************LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL****************************************************LIDKLADSYPIRRAAQWVVYFTNK******************************************
Disordered Region (DISOPRED)
MFKK**************************************************************************************LEIETET******************************AN***************************PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFL************************EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL******************************************KKLNQAREQQLIDKLADSYPI*************************LSKQNVDKLGEKLEAYLKNIRDQ*E*****
Disordered Region (DISEMBL)
***************************IVRKEKKIREDPNFQ*******************************************GATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDI****************************SQKVLELNKKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNVDKLGEKLEAYLKNIRDQLEKKLKQ
Disordered Region (DISPRO)
*****************************************************************QVG***KSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKD************KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG*******PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDI************************************KKLNQAREQQLIDKLADSYPIRRAAQWVVYFTNK**********ENLS***VDKLGEKLEAYLKNIRDQLEKKL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFKKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSSQKTTQxxxxxxxxxxxxxxxxxxxxxQLIDKLADSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSKQNxxxxxxxxxxxxxxxxxxxxxKLKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
O15541	343	RING finger protein 113A	yes	N/A	0.744	0.874	0.512	3e-89
Q67ER4	343	RING finger protein 113A	yes	N/A	0.741	0.871	0.517	5e-86
Q8IZP6	322	RING finger protein 113B	no	N/A	0.694	0.869	0.466	5e-76
O17917	384	RING finger protein 113 h	yes	N/A	0.667	0.700	0.468	8e-64
Q9FNG6	378	Zinc finger CCCH domain-c	yes	N/A	0.669	0.714	0.408	2e-54
Q8GX84	343	Zinc finger CCCH domain-c	no	N/A	0.684	0.804	0.416	4e-54
Q6K4V3	326	Zinc finger CCCH domain-c	yes	N/A	0.498	0.616	0.478	7e-51
Q4P400	355	Pre-mRNA-splicing factor	N/A	N/A	0.401	0.456	0.473	5e-46
P0CQ64	329	Pre-mRNA-splicing factor	yes	N/A	0.446	0.547	0.460	1e-40
P0CQ65	329	Pre-mRNA-splicing factor	N/A	N/A	0.446	0.547	0.460	1e-40

>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/324 (51%), Positives = 224/324 (69%), Gaps = 24/324 (7%)

Query: 1   MFKK--RQVKQNTRKRQ------NDSESESEDETQIVRKEKK-IREDPNFQKT---TKQT 48
           +FKK  R+     RKR        +S S S++   +VR EKK +  +P  QKT    KQ 
Sbjct: 18  LFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKRVTHNPMIQKTRDSGKQK 77

Query: 49  KAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
            A      + E +     +GV YKS +S+   GP DMGATA  E++TE ++DAQAI+E+S
Sbjct: 78  AAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137

Query: 109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
            KI  EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct: 138 QKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197

Query: 169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
           QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+   DEE
Sbjct: 198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEE 257

Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
             +PFKC+ICR SF++PV+TKC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++ 
Sbjct: 258 --IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315

Query: 284 KLK-----DAGDIKTMAKDSDSDS 302
           KL+       G    + +D D D+
Sbjct: 316 KLEKHRATGEGGASDLPEDPDEDA 339

Homo sapiens (taxid: 9606)

>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1

 Score =  318 bits (815), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/323 (51%), Positives = 226/323 (69%), Gaps = 24/323 (7%)

Query: 1   MFKK--RQVKQNTRKR------QNDSESESEDETQIVRKEKK-IREDPNFQKT---TKQT 48
           +FKK  R+V    RKR        DS S S++   +VR EKK    +P  QKT    KQ 
Sbjct: 18  LFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTRGSGKQK 77

Query: 49  KAAKPQVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
            A      + E +  S  +GV YKS +S+   GP DMGATA  E++TE ++DAQAI+E+S
Sbjct: 78  VAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137

Query: 109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
            KI  EL+G+EDDK+YRG+ NY ++ + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct: 138 QKIQEELRGQEDDKIYRGINNYQKFMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197

Query: 169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
           QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+  SDEE
Sbjct: 198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEV-GSDEE 256

Query: 224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
           + +PFKC+ICR +F++PV+TKC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++ 
Sbjct: 257 E-IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315

Query: 284 KLK-----DAGDIKTMAKDSDSD 301
           KL+     + G      +D D D
Sbjct: 316 KLEKHRAAEGGGASGFPEDPDED 338

Bos taurus (taxid: 9913)

>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3

 Score =  285 bits (729), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 198/298 (66%), Gaps = 18/298 (6%)

Query: 1   MFKK--RQVKQNTRKR-----QNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKP 53
           +FKK  R+     RKR     ++   S S DE   V +  ++   P    + +  KAA  
Sbjct: 21  LFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLHSWQ--KAAHG 78

Query: 54  QVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINA 113
                E+   S  + V Y+S +S+   GP DMGATA  E +TE +     I + S ++  
Sbjct: 79  DRRGEEAAPES--LDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTILKCSQRVQE 136

Query: 114 ELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDIC 173
            L+G+E D +YRG+ +Y +Y + KDT+ GN++SG  RKGPIRAP ++R+TVRWDYQPDIC
Sbjct: 137 ALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAPGHLRATVRWDYQPDIC 196

Query: 174 KDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPF 228
           KDYKETGFCGFGDSCKFLHDR+DYK GW++E+E E+G     +++N+E+    EE+ +PF
Sbjct: 197 KDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICEDENHEV--GSEEEEIPF 254

Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
           +C+ICR +F++PV+TKC+HYFC  CALEHF+ TP+CYIC + T G F  A++++ KL+
Sbjct: 255 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 312

Homo sapiens (taxid: 9606)

>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans GN=rnf-113 PE=2 SV=2

 Score =  244 bits (623), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 136/290 (46%), Positives = 190/290 (65%), Gaps = 21/290 (7%)

Query: 11  TRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTK---QTKAAKPQVEDSESDESSCQV 67
            RK+++ S+ + + E + V ++++ R +P  Q T +    T+ A    +DS+  + +  +
Sbjct: 15  VRKKESSSDEDQDSEVKDVIQKRR-RTNPMVQSTKQLDASTRRADNSSDDSDDSDDNQDI 73

Query: 68  GVSYKSRKSSARDGPS---DMGATATLEIETETDKDAQAIYEK---SLKINAELKGKEDD 121
            V+  S  +S   GPS   D GATATLE++T+   DAQA +E+    LK   E  GK   
Sbjct: 74  AVATHSFAASGDAGPSGPRDQGATATLEVDTDYSHDAQAQFERVQQQLKEGVEKDGK--- 130

Query: 122 KVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGF 181
            +Y+G A Y    E KDTA+GNAASG+ R GP+RAP  +R TVRWD+ PDICKDYKETGF
Sbjct: 131 ILYKGSALYGAK-EAKDTAKGNAASGYNRVGPVRAPQFLRQTVRWDFAPDICKDYKETGF 189

Query: 182 CGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPFKCYICRNS 236
           C FGDSCKF+HDR+DYK+GW++++E+E G     D+ NYEI + D  D  P  C+IC N 
Sbjct: 190 CTFGDSCKFVHDRSDYKHGWEIDEEYEAGKYGAEDDANYEIHEGD--DTFPEDCFICGNP 247

Query: 237 FKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
           F DP++TKCKHYFCT CAL+ F+K+ KC ICQ+NT     TA++++  LK
Sbjct: 248 FVDPIVTKCKHYFCTGCALKSFQKSSKCPICQQNTENIMNTAKELLTYLK 297

Caenorhabditis elegans (taxid: 6239)

>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 181/313 (57%), Gaps = 43/313 (13%)

Query: 1   MFKKRQVKQNTRKRQNDSESE---SEDETQIVRKEKKI-REDPN--FQKTTKQTKAAKPQ 54
            FKK    +N RKR  D++ E   S+ E+ I++  KK+ + D N  F        +  P+
Sbjct: 70  FFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYFSSGPSTRTSGAPE 129

Query: 55  VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK-INA 113
                 D SS ++ V             +D GATATLE ET+ ++DA+AI E+ LK  + 
Sbjct: 130 RPVFHYD-SSKEIQVQ------------NDSGATATLETETDFNQDARAIRERVLKKADH 176

Query: 114 ELKGKE----DDKVYRGLANYAQY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRW 166
            LKG +    D+K+Y+G+  Y  +   F ++ T     A G    GP+RA A++R + R+
Sbjct: 177 ALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG--SHGPLRASAHIRVSARF 234

Query: 167 DYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----NKNYEI---- 217
           DYQPDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E E+ +     NK   +    
Sbjct: 235 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDD 294

Query: 218 -----PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272
                   ++E+ LPF C+ICR  F DPV+TKCKHYFC  CAL+H  K  KC++C + T 
Sbjct: 295 DEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTM 354

Query: 273 GEFRTAEKIVQKL 285
           G F  A +I +++
Sbjct: 355 GIFNAAHEIKKRM 367

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2

 Score =  212 bits (540), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 182/310 (58%), Gaps = 34/310 (10%)

Query: 1   MFKKRQVKQNTRKRQNDSESE---SEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVED 57
            FKK    +N RKR  D++ E   S+ E+ I++  KK+ + P+  K    +  +K     
Sbjct: 32  FFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAK-PD-SKLYFSSGPSKSSTTT 89

Query: 58  SESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK-INAELK 116
           S + E S      Y S K       +D GATATLE ET+ ++DA+AI E+ LK  +  LK
Sbjct: 90  SGAPERSV---FHYDSSKEIQVQ--NDSGATATLETETDFNQDARAIRERVLKKADEALK 144

Query: 117 GKE----DDKVYRGLANYAQY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQ 169
           G +    D+K+Y+G+  Y  +   F ++ T     A G    GP+RA A++R + R+DYQ
Sbjct: 145 GNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG--SHGPLRASAHIRVSARFDYQ 202

Query: 170 PDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----NKNYEI------- 217
           PDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E E+ +     NK   +       
Sbjct: 203 PDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDEDDEA 262

Query: 218 --PDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF 275
                ++E+ LPF C+ICR  F DPV+TKCKHYFC  CAL+H  K  KC++C + T G F
Sbjct: 263 DKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIF 322

Query: 276 RTAEKIVQKL 285
             A +I +++
Sbjct: 323 NAAHEIKKRM 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 111/232 (47%), Positives = 142/232 (61%), Gaps = 31/232 (13%)

Query: 83  SDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDD-----------KVYRGLANYA 131
           +D  ATATLE ETE D+DA+AI E+ LK   E   K              +VY+G+  Y 
Sbjct: 91  TDSRATATLETETEFDRDARAIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYT 150

Query: 132 QY---FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSC 188
            Y   F ++ T     A G    GP+RA A++R + R+DYQPDICKDYKETG+CG+GDSC
Sbjct: 151 DYKAGFRREHTVSSEKAGG--SHGPLRASAHIRLSARFDYQPDICKDYKETGYCGYGDSC 208

Query: 189 KFLHDRTDYKYGWQLEQEHE------------DGDNKNYEIPDSDEEDH---LPFKCYIC 233
           KF+HDR DYK GWQ+E+E E             GD  +YE  + D++D    LPF CYIC
Sbjct: 209 KFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGSDYEAGEEDDDDDEEALPFACYIC 268

Query: 234 RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
           R  F DPV+TKCKHYFC  CAL+H  K  KC++C K T G F  A++I +K+
Sbjct: 269 REPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAQEIRKKM 320

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 110/169 (65%), Gaps = 7/169 (4%)

Query: 121 DKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG 180
           D +YRG  +YA +   +D      +S    +GPIR    VR+T   DYQPD+CKDYKETG
Sbjct: 154 DGLYRGAKSYASFTRTRDDG---CSSKMRSRGPIRQTTTVRTTSLIDYQPDVCKDYKETG 210

Query: 181 FCGFGDSCKFLHDRTDYKYGWQLE----QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNS 236
           +CGFGD+CKFLHDR+DY  GWQL+          +N   +  DSD ED +PF C ICR +
Sbjct: 211 YCGFGDTCKFLHDRSDYLAGWQLDVLPNSSSRTRENMLSDPEDSDTEDDIPFACLICRKA 270

Query: 237 FKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
           F DPV+T+C HYFC+ CA++ F K  KC+ C + T G F +A+K+++++
Sbjct: 271 FTDPVVTRCAHYFCSSCAIKRFAKNSKCFACGQQTGGLFNSAKKVLERM 319

Involved in pre-mRNA splicing.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC24 PE=3 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 120/189 (63%), Gaps = 9/189 (4%)

Query: 98  DKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEK-KDTAQGNAASGFVRKGPIRA 156
           D D Q   +K ++++ + +   DD +YRG + Y     K ++T         ++ GPI+A
Sbjct: 112 DVDGQGQRDKKVRLDEDGEIVTDDGLYRGASAYLPTINKTRETLDKK-----MKSGPIKA 166

Query: 157 PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE 216
            ++VR+    DYQPD+CKDYKETGFCG+GDSCKFLHDR DY  GWQL++  E+G  +  E
Sbjct: 167 TSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEE 226

Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
               DEE+ +PF C ICR  F  PV+TKC HYFC  CA + F+K+PKCY C   T G F 
Sbjct: 227 ---EDEEEEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFN 283

Query: 277 TAEKIVQKL 285
            A+K++ K+
Sbjct: 284 IADKVIAKI 292

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC24 PE=3 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 120/189 (63%), Gaps = 9/189 (4%)

Query: 98  DKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQYFEK-KDTAQGNAASGFVRKGPIRA 156
           D D Q   +K ++++ + +   DD +YRG + Y     K ++T         ++ GPI+A
Sbjct: 112 DVDGQGQRDKKVRLDEDGEIVTDDGLYRGASAYLPTINKTRETLDKK-----MKSGPIKA 166

Query: 157 PANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE 216
            ++VR+    DYQPD+CKDYKETGFCG+GDSCKFLHDR DY  GWQL++  E+G  +  E
Sbjct: 167 TSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFLHDRGDYLAGWQLDKLPEEGVREVEE 226

Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
               DEE+ +PF C ICR  F  PV+TKC HYFC  CA + F+K+PKCY C   T G F 
Sbjct: 227 ---EDEEEEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYACGAPTQGIFN 283

Query: 277 TAEKIVQKL 285
            A+K++ K+
Sbjct: 284 IADKVIAKI 292

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
193676506	311	PREDICTED: RING finger protein 113A-like	0.741	0.961	0.612	1e-104
239790174	311	ACYPI006184 [Acyrthosiphon pisum]	0.741	0.961	0.596	1e-100
340724628	325	PREDICTED: RING finger protein 113A-like	0.734	0.910	0.605	1e-99
350397659	325	PREDICTED: RING finger protein 113A-like	0.734	0.910	0.601	2e-99
307195659	324	RING finger protein 113A [Harpegnathos s	0.739	0.919	0.595	1e-98
91086881	327	PREDICTED: similar to AGAP007068-PA [Tri	0.736	0.908	0.594	1e-98
380022343	325	PREDICTED: RING finger protein 113A-like	0.697	0.864	0.603	2e-97
332017630	325	RING finger protein 113A [Acromyrmex ech	0.739	0.916	0.590	3e-97
170037220	321	RING finger protein 113A [Culex quinquef	0.734	0.922	0.567	5e-97
157123920	317	zinc finger protein, putative [Aedes aeg	0.699	0.889	0.593	1e-95

>gi|193676506|ref|XP_001943511.1| PREDICTED: RING finger protein 113A-like [Acyrthosiphon pisum]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/310 (61%), Positives = 233/310 (75%), Gaps = 11/310 (3%)

Query: 2   FKKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTT--KQTKAAKPQVEDSE 59
           FKKR+V QN R+R       S++E+ +V  EK+ ++   F ++T  K+ KA+ P  + SE
Sbjct: 5   FKKRKVVQNRRRRAASDSENSDEESAVVLNEKRNKKSSPFIQSTSNKKLKASGPIHDSSE 64

Query: 60  SDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKE 119
           SD  S  VGVSY+S+  +   GP DMGATAT+EI+TE DKDAQAIYE+SL++N ELKGKE
Sbjct: 65  SDNES--VGVSYRSKMDTDMSGPKDMGATATIEIDTELDKDAQAIYERSLQVNKELKGKE 122

Query: 120 DDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKET 179
           DDKVYRGLANY QY+EKKDTA GNA+SG VRKGPIRAPAN+RSTVRWDYQPDICKDYKET
Sbjct: 123 DDKVYRGLANYTQYYEKKDTALGNASSGMVRKGPIRAPANLRSTVRWDYQPDICKDYKET 182

Query: 180 GFCGFGDSCKFLHDRTDYKYGWQLEQE------HEDGDNKNYEIPDSDEEDHLPFKCYIC 233
           GFCGFGDSCKFLHDR+DYK+GWQLE E       +D D   YEI ++D +D+LPFKC IC
Sbjct: 183 GFCGFGDSCKFLHDRSDYKFGWQLEMESTQQGDSDDDDPSKYEIKEND-DDYLPFKCLIC 241

Query: 234 RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKT 293
           R S+ +PVMTKCKHYFC KCAL HFKK+ KC++C+K T G F  A  I+++L  A     
Sbjct: 242 RGSYVNPVMTKCKHYFCEKCALAHFKKSTKCFVCEKQTGGFFDPATTIIERLNAANTDII 301

Query: 294 MAKDSDSDSD 303
              +SD +SD
Sbjct: 302 HQCNSDEESD 311

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790174|dbj|BAH71664.1| ACYPI006184 [Acyrthosiphon pisum]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/310 (59%), Positives = 229/310 (73%), Gaps = 11/310 (3%)

Query: 2   FKKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTT--KQTKAAKPQVEDSE 59
           FKKR+V QN R+R       S++E+ +V  EK+ ++   F ++T  K+ KA+ P  + SE
Sbjct: 5   FKKRKVVQNRRRRAASDSENSDEESAVVLNEKRNKKSSPFIQSTSNKKLKASGPIHDSSE 64

Query: 60  SDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKE 119
           SD  S  VGVSY+S+  +   GP DMGATAT+EI+TE DKDAQAIYE+SL++N ELKGKE
Sbjct: 65  SDNES--VGVSYRSKMDTDMSGPKDMGATATIEIDTELDKDAQAIYERSLQVNKELKGKE 122

Query: 120 DDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKET 179
           DDKVYRGLANY QY+EKKDTA GNA+SG VRKGPIRAPAN+RSTVRW YQPDICK  K+ 
Sbjct: 123 DDKVYRGLANYTQYYEKKDTALGNASSGMVRKGPIRAPANLRSTVRWYYQPDICKIIKKL 182

Query: 180 GFCGFGDSCKFLHDRTDYKYGWQLEQE------HEDGDNKNYEIPDSDEEDHLPFKCYIC 233
           GFCGFGDSCKFLHDR+DYK+GWQLE E       +D D   YEI ++D +D+LPFKC IC
Sbjct: 183 GFCGFGDSCKFLHDRSDYKFGWQLEMESTQQGDSDDDDPSKYEIKEND-DDYLPFKCLIC 241

Query: 234 RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAGDIKT 293
           R S+ +PVMTKCKHYFC KCAL HFKK+ KC++C+K T G F  A  I+++L  A     
Sbjct: 242 RGSYVNPVMTKCKHYFCEKCALAHFKKSTKCFVCEKQTGGFFDPATTIIERLNAANTDII 301

Query: 294 MAKDSDSDSD 303
              +SD +SD
Sbjct: 302 HQCNSDEESD 311

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724628|ref|XP_003400683.1| PREDICTED: RING finger protein 113A-like [Bombus terrestris]

 Score =  370 bits (949), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 190/314 (60%), Positives = 234/314 (74%), Gaps = 18/314 (5%)

Query: 1   MFKKRQVKQNT---RKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQ--V 55
           +FK+R+++      RK  ND +  SEDET +V+KEKK ++D N  K +  TK  K Q  +
Sbjct: 16  LFKRRKIRSTAARKRKTANDEDESSEDETTVVKKEKK-QDDNNPMKQSTNTKKLKDQRHI 74

Query: 56  EDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAEL 115
           ++S SD+ S  V VSYKS K+    GPSD GATA LE ETE DKDAQA++EK+ KIN EL
Sbjct: 75  DNSSSDDES--VTVSYKSSKTPMPAGPSDQGATAILETETEKDKDAQALFEKAQKINEEL 132

Query: 116 KGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKD 175
           +GKEDDK+YRGL NYAQY++KKDTA GNA+SG VRKGPIRAP+N+R+TVRWDYQPDICKD
Sbjct: 133 EGKEDDKIYRGLNNYAQYYKKKDTAAGNASSGMVRKGPIRAPSNLRATVRWDYQPDICKD 192

Query: 176 YKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG--------DNKNYEIPDSDEEDHLP 227
           YKETGFCGFGDSCKFLHDR+DYK GWQLE+E   G        D+K YEI DSDEE  LP
Sbjct: 193 YKETGFCGFGDSCKFLHDRSDYKLGWQLEREAATGEYNNSGDEDDKKYEI-DSDEE-TLP 250

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           FKC+ICR+SF DP++TKCKHYFC KCALEH+KK+ +CYIC   T G F  A++++ + K 
Sbjct: 251 FKCFICRSSFTDPIVTKCKHYFCEKCALEHYKKSTRCYICNVQTNGVFNPAKELITRTKM 310

Query: 288 AGDIKTMAKDSDSD 301
               K++  D  SD
Sbjct: 311 EEKAKSVEDDEISD 324

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397659|ref|XP_003484946.1| PREDICTED: RING finger protein 113A-like [Bombus impatiens]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/314 (60%), Positives = 234/314 (74%), Gaps = 18/314 (5%)

Query: 1   MFKKRQVKQNT---RKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQ--V 55
           +FK+R+++      RK  ND +  SEDET +V+KEKK ++D N  K +  TK  K Q  +
Sbjct: 16  LFKRRKIRSTAARKRKTANDEDESSEDETTVVKKEKK-QDDNNPMKQSTNTKKLKDQRHI 74

Query: 56  EDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAEL 115
           +++ SD+ S  V VSYKS K+    GPSD GATA LE ETE DKDAQA++EK+ KIN EL
Sbjct: 75  DNNSSDDES--VTVSYKSSKTPMPAGPSDQGATAILETETEKDKDAQALFEKAQKINEEL 132

Query: 116 KGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKD 175
           +GKEDDK+YRGL NYAQY++KKDTA GNA+SG VRKGPIRAP+N+R+TVRWDYQPDICKD
Sbjct: 133 EGKEDDKIYRGLNNYAQYYKKKDTAAGNASSGMVRKGPIRAPSNLRATVRWDYQPDICKD 192

Query: 176 YKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG--------DNKNYEIPDSDEEDHLP 227
           YKETGFCGFGDSCKFLHDR+DYK GWQLE+E   G        D+K YEI DSDEE  LP
Sbjct: 193 YKETGFCGFGDSCKFLHDRSDYKLGWQLEREAATGEYNNSGDEDDKKYEI-DSDEE-TLP 250

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           FKC+ICR+SF DP++TKCKHYFC KCALEH+KK+ +CYIC   T G F  A++++ + K 
Sbjct: 251 FKCFICRSSFTDPIVTKCKHYFCEKCALEHYKKSTRCYICNVQTNGVFNPAKELITRTKM 310

Query: 288 AGDIKTMAKDSDSD 301
               K++  D  SD
Sbjct: 311 EEKAKSVEDDEISD 324

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195659|gb|EFN77501.1| RING finger protein 113A [Harpegnathos saltator]

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/314 (59%), Positives = 233/314 (74%), Gaps = 16/314 (5%)

Query: 1   MFKKRQVKQN-TRKRQ--NDSESESEDETQIVRKEKKIRED-PNFQKTTKQTKAAKPQVE 56
           +FK+R+++ N TRKR+  + ++  SEDET +++KEKK  ++ P  Q T  +    K   +
Sbjct: 16  LFKRRKIRSNATRKRKGADGNDDSSEDETTVIKKEKKQDDNNPMIQSTNVKKHQEKTSYD 75

Query: 57  DSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELK 116
           +   D+S   V VSYKS +++   GPSD GATA LE ETE D+DAQA++EK+ KIN EL+
Sbjct: 76  NDSEDDS---VTVSYKSNRTALPAGPSDQGATAILETETEKDRDAQALFEKAQKINEELE 132

Query: 117 GKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDY 176
           GKEDDKVYRGL NY QY++KKDTA GNA+SG VRKGPIRAP+N+R+TVRWDYQPDICKDY
Sbjct: 133 GKEDDKVYRGLNNYVQYYKKKDTAAGNASSGMVRKGPIRAPSNLRATVRWDYQPDICKDY 192

Query: 177 KETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-------DNKNYEIPDSDEEDHLPFK 229
           KETGFCGFGDSCKFLHDR+DYK GWQLE+E   G       D+K YEI DSD ED+LPFK
Sbjct: 193 KETGFCGFGDSCKFLHDRSDYKLGWQLEREAASGEYNSGDEDDKKYEI-DSD-EDNLPFK 250

Query: 230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDAG 289
           C+ICRNSF DPV+TKCKHYFC KCALE +KK+ +CYIC   T G F  A++++ + K   
Sbjct: 251 CFICRNSFTDPVVTKCKHYFCEKCALEQYKKSTRCYICNAQTNGTFNPAKELIARAKLED 310

Query: 290 DIKTMAKDSDSDSD 303
             KT A   DSD D
Sbjct: 311 KEKTAATSEDSDDD 324

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086881|ref|XP_970132.1| PREDICTED: similar to AGAP007068-PA [Tribolium castaneum] gi|270010474|gb|EFA06922.1| hypothetical protein TcasGA2_TC009871 [Tribolium castaneum]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/316 (59%), Positives = 235/316 (74%), Gaps = 19/316 (6%)

Query: 1   MFKKRQVK-QNTRKRQNDS----ESESEDETQIVR-KEKKIREDPNFQKTTKQTKAAKPQ 54
           +FKKR +K +  RKRQ  S    +S SEDE+ + R   ++ + +PNFQ T+K  +    Q
Sbjct: 18  IFKKRNIKNKGARKRQKSSSEGEKSNSEDESAVKRANRRRGKANPNFQTTSKAKQKEHEQ 77

Query: 55  VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAE 114
              S S+E   ++ VSYKS++S+  +GP D GATATLE ETE D+DAQAI+EK L+IN  
Sbjct: 78  QNYSSSEE---EIMVSYKSKRSAMPEGPQDQGATATLEFETERDRDAQAIFEKRLEINKN 134

Query: 115 LKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICK 174
           L+GKEDDKVYRG+ NYAQY++ KDTA GNA+SG VRKGPIRAPAN+R+TVRWDYQPDICK
Sbjct: 135 LEGKEDDKVYRGINNYAQYYKPKDTAAGNASSGMVRKGPIRAPANLRATVRWDYQPDICK 194

Query: 175 DYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-------DNKNYEIPDSDEEDHLP 227
           DYKETGFCGFGDSCKFLHDR+DYK+GWQLE+E  +G       ++K YEI DSDEED LP
Sbjct: 195 DYKETGFCGFGDSCKFLHDRSDYKHGWQLEREWAEGKYGQESDEDKQYEI-DSDEED-LP 252

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           FKC +CR+SF DP++TKCKHYFC KCALE +KKT +C++C   T G F  A K++ +L  
Sbjct: 253 FKCVVCRDSFVDPIVTKCKHYFCEKCALERYKKTTRCFVCNTQTSGVFNPARKLIARLNR 312

Query: 288 AGDIKTMAKDSDSDSD 303
             + K    DSDSDSD
Sbjct: 313 EDNPKK-KNDSDSDSD 327

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022343|ref|XP_003695009.1| PREDICTED: RING finger protein 113A-like [Apis florea]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 224/300 (74%), Gaps = 19/300 (6%)

Query: 1   MFKKRQVKQNT---RKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQ--- 54
           +FK+R+++      RK +ND    SEDET ++RKEKK ++D N  K +  T+  K Q   
Sbjct: 16  LFKRRKIRSTAARKRKIRNDENESSEDETTVIRKEKK-QDDNNLMKQSTNTRKLKDQQQK 74

Query: 55  VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAE 114
           + +  S+E S  + VSYKS ++    GPSD GATA LE ETE DKDAQA++EK+ KIN E
Sbjct: 75  INNDSSEEES--ITVSYKSSRTPMPAGPSDQGATAILETETEKDKDAQALFEKAQKINEE 132

Query: 115 LKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICK 174
           L+GKEDDK+YRGL NY QY++KKDTA GNA+SG VRKGPIRAP+N+R+TVRWDYQPDICK
Sbjct: 133 LEGKEDDKIYRGLNNYIQYYKKKDTAAGNASSGMVRKGPIRAPSNLRATVRWDYQPDICK 192

Query: 175 DYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG--------DNKNYEIPDSDEEDHL 226
           DYKETGFCGFGDSCKFLHDR+DYK GWQLE+E   G        D+K YEI DSDEE  L
Sbjct: 193 DYKETGFCGFGDSCKFLHDRSDYKLGWQLEREAATGEYNNSGDEDDKKYEI-DSDEE-TL 250

Query: 227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
           PFKC+ICRNSF DPV+TKCKHYFC KCAL+ +KK+ +CYIC   T G F  A++++ + K
Sbjct: 251 PFKCFICRNSFTDPVVTKCKHYFCEKCALDQYKKSTRCYICNVQTNGVFNPAKELIARTK 310

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017630|gb|EGI58327.1| RING finger protein 113A [Acromyrmex echinatior]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/315 (59%), Positives = 236/315 (74%), Gaps = 17/315 (5%)

Query: 1   MFKKRQVKQN-TRKRQ--NDSESESEDETQIVRKEKKIRE-DPNFQKTTKQTKAAKPQVE 56
           +FK+R++ +N TRKR+  + S+  SEDET +V+KEKK  + +P  Q T  +    K   +
Sbjct: 16  LFKRRKIHKNATRKRRGADGSDDSSEDETMVVKKEKKQDDHNPMIQSTNVKKHQEKINRD 75

Query: 57  DSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELK 116
           D+ S++ S  + VSYKS +++   GPSD GATA L+ ETE D+DAQA++EK+ KIN EL+
Sbjct: 76  DNNSEDDS--ITVSYKSSRTALPAGPSDQGATAVLQTETEKDRDAQALFEKAQKINEELE 133

Query: 117 GKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDY 176
           GKEDDK+YRGL NYAQY++KKDTA GNA+SG VRKGPIRAP+N+R+TVRWDYQPDICKDY
Sbjct: 134 GKEDDKIYRGLNNYAQYYKKKDTAAGNASSGMVRKGPIRAPSNLRATVRWDYQPDICKDY 193

Query: 177 KETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG--------DNKNYEIPDSDEEDHLPF 228
           KETGFCGFGDSCKFLHDR+DYK GWQLE+E   G        D+K YEI DSDEE +LPF
Sbjct: 194 KETGFCGFGDSCKFLHDRSDYKLGWQLEREAATGEYNDSGDEDDKKYEI-DSDEE-NLPF 251

Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDA 288
           KC+ICRNSF DPV+TKCKHYFC KCALE ++K+ +CYIC   T G F  A++++ + K  
Sbjct: 252 KCFICRNSFTDPVVTKCKHYFCEKCALEQYRKSTRCYICNVQTNGTFNPAKELIARTK-L 310

Query: 289 GDIKTMAKDSDSDSD 303
            D +  A   DSD D
Sbjct: 311 EDKEKSAASEDSDED 325

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037220|ref|XP_001846457.1| RING finger protein 113A [Culex quinquefasciatus] gi|167880291|gb|EDS43674.1| RING finger protein 113A [Culex quinquefasciatus]

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 227/324 (70%), Gaps = 28/324 (8%)

Query: 2   FKKRQVKQN-TRKRQNDS---ESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVED 57
           F KR VK    RKR+  S   E+E E  + +V  E+K + +PN Q T+      K + E+
Sbjct: 4   FIKRNVKNKFARKRKQSSDSDEAEPESSSVVVNHERKKKSNPNVQSTSSLKANLKSKKEN 63

Query: 58  S-------ESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK 110
           +       E D  S  VGVSYKS + + R GP D GATA LEIET+   DAQAIYEKSL+
Sbjct: 64  NSSGSDSDEEDAGSSSVGVSYKSNRCAGRAGPQDQGATAELEIETDKAHDAQAIYEKSLE 123

Query: 111 INAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQP 170
           +N EL+GKEDDK+YRGL NY Q+++KKDTAQGNAASG VRKGPIRAPAN+RSTVRWDYQP
Sbjct: 124 VNRELEGKEDDKLYRGLNNYTQFYKKKDTAQGNAASGMVRKGPIRAPANIRSTVRWDYQP 183

Query: 171 DICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEH-----------EDGDNKNYEIPD 219
           DICKDYKETG+CGFGDSCKFLHDR+DYK+GWQ+EQE             DGD+  YEI  
Sbjct: 184 DICKDYKETGYCGFGDSCKFLHDRSDYKHGWQMEQESSGTGGTYAGDDSDGDDTKYEIHS 243

Query: 220 SDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAE 279
            DEE  LPFKCYICR SF DP++TKCKHYFC KCAL ++KK+ +C IC   T G F  A+
Sbjct: 244 DDEE--LPFKCYICRESFVDPIVTKCKHYFCEKCALANYKKSTRCAICGVQTNGMFNPAK 301

Query: 280 KIVQKLKDAGDIKTMAKDSDSDSD 303
           +++ +LK     + + +++ SDSD
Sbjct: 302 ELIARLK----TREINEENGSDSD 321

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123920|ref|XP_001653974.1| zinc finger protein, putative [Aedes aegypti] gi|108882876|gb|EAT47101.1| AAEL001778-PA [Aedes aegypti]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/305 (59%), Positives = 220/305 (72%), Gaps = 23/305 (7%)

Query: 2   FKKRQVKQN-TRKRQNDSESESEDETQ---IVRKEKKIREDPNFQKTTKQTKAAKPQVED 57
           F KR VK    RKR+  SES+ EDE +   ++ ++K+ + +PN Q T+      K     
Sbjct: 4   FIKRNVKNKFARKRKQSSESD-EDEPESAVVINQDKRKKANPNVQSTSSIKHQRKAADHA 62

Query: 58  SESDESS-----CQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKIN 112
           S SD  S       VGVSYKS++S+A  GP+D GATA LEIETE   DAQAIYEKS++IN
Sbjct: 63  SNSDSGSEEDDRSAVGVSYKSKRSAAPAGPNDQGATAELEIETEKSHDAQAIYEKSIEIN 122

Query: 113 AELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDI 172
            EL+GKEDDKVYRG+ANY Q+++KKD+A GNAASG VRKGPIRAP+N+RSTVRWDYQPDI
Sbjct: 123 KELEGKEDDKVYRGMANYTQFYKKKDSALGNAASGMVRKGPIRAPSNIRSTVRWDYQPDI 182

Query: 173 CKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEH-----------EDGDNKNYEIPDSD 221
           CKDYKETG+CGFGDSCKFLHDR+DYK+GWQLEQE             DGD+  YEI   D
Sbjct: 183 CKDYKETGYCGFGDSCKFLHDRSDYKHGWQLEQEASTTGGTYAGDDSDGDDTKYEIHSDD 242

Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKI 281
           EE  LPFKCYICR SF DP++TKCKHYFC KCAL ++KK+ +C IC   T G F  A+ +
Sbjct: 243 EE--LPFKCYICRESFVDPIVTKCKHYFCEKCALANYKKSTRCAICGVQTNGVFNPAKDL 300

Query: 282 VQKLK 286
           + +LK
Sbjct: 301 IARLK 305

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
UNIPROTKB|Q67ER3	328	RNF113A "Zinc finger protein 1	0.712	0.875	0.559	8.3e-90
ZFIN|ZDB-GENE-040825-1	321	rnf113a "ring finger protein 1	0.712	0.894	0.538	1.6e-86
UNIPROTKB|F1RUA4	344	LOC100514886 "Uncharacterized	0.704	0.825	0.519	7.2e-84
UNIPROTKB|O15541	343	RNF113A "RING finger protein 1	0.704	0.827	0.518	1.2e-83
FB|FBgn0038772	357	CG4973 [Drosophila melanogaste	0.702	0.792	0.532	1.5e-83
UNIPROTKB|Q67ER4	343	RNF113A "RING finger protein 1	0.704	0.827	0.518	1.5e-83
UNIPROTKB|E2RE92	348	LOC100855580 "Uncharacterized	0.665	0.770	0.533	1.5e-83
UNIPROTKB|Q5PPN1	341	Rnf113a1 "Ring finger protein	0.702	0.829	0.52	6.4e-83
UNIPROTKB|E1BF77	351	LOC518027 "Uncharacterized pro	0.662	0.760	0.521	1e-77
UNIPROTKB|E2RGA7	350	LOC480186 "Uncharacterized pro	0.575	0.662	0.545	8.4e-74

UNIPROTKB|Q67ER3 RNF113A "Zinc finger protein 183" [Gallus gallus (taxid:9031)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 170/304 (55%), Positives = 226/304 (74%)

Query:     1 MFKKRQVK--QNTRKR-QNDSESES--EDETQIVRKEKKIREDPN-FXXXXXXXXXXXPQ 54
             +FKKR +   +  RKR  +D E ES  E+ + +VRKE++ RE PN             P 
Sbjct:    11 VFKKRGLAAGRGRRKRPSSDQEQESSGEEGSTVVRKERR-RETPNPMIQKTRRCTKERPS 69

Query:    55 --VEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKIN 112
               +  S+ D+ S ++GV+YKS +S+   GP DMGATA  E++TE DKDAQAI+E+S KI 
Sbjct:    70 YALSSSDDDDPSKEIGVTYKSTRSAKPVGPEDMGATAVYELDTEKDKDAQAIFERSQKIQ 129

Query:   113 AELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDI 172
              EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDYQPDI
Sbjct:   130 EELRGKEDDKIYRGINNYQKYVKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDI 189

Query:   173 CKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLP 227
             CKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     D +NYE+  SDEED +P
Sbjct:   190 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVNDEENYEV-SSDEED-MP 247

Query:   228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL-K 286
             FKC+ICR+SFK+PV+TKC+HYFC  CAL+H++K+ +CY+C K T G F  A++++ KL K
Sbjct:   248 FKCFICRSSFKNPVVTKCRHYFCESCALQHYRKSQRCYVCDKQTNGVFNPAKELMAKLEK 307

Query:   287 DAGD 290
               G+
Sbjct:   308 HKGE 311

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040825-1 rnf113a "ring finger protein 113A" [Danio rerio (taxid:7955)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 162/301 (53%), Positives = 214/301 (71%)

Query:     1 MFKKRQVKQNTRKRQ---NDSESESEDE-TQIVRKEKKIREDPNFXXXXXXXXXXXPQVE 56
             +FKK   K + RKR    +D E  S DE + +VRK+K    +P                E
Sbjct:    15 IFKKSNKKFSARKRNASDSDKEKSSGDEGSAVVRKKKSAAVNPMIQKTKKVEREAVSSSE 74

Query:    57 DSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELK 116
               E  E    V V+YKS +S+  +GP DMGATA  E++TE DKDAQAI+E+S KI  EL 
Sbjct:    75 SEEEKEEK-SVTVAYKSTRSAKPEGPDDMGATAVYELDTERDKDAQAIFERSQKIQEELT 133

Query:   117 GKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDY 176
             GKEDDK+YRG+ NY ++ + KD+  GNA+SG VRKGPIRAP ++R+TVRWDYQPDICKDY
Sbjct:   134 GKEDDKIYRGINNYHKFIKPKDSTMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDY 193

Query:   177 KETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPFKCY 231
             KETGFCGFGDSCKFLHDR+DYK+GWQ+E+E E+G     D++NYE+  SD+ED LPFKC+
Sbjct:   194 KETGFCGFGDSCKFLHDRSDYKHGWQIERELEEGRYGANDDENYEV-SSDDED-LPFKCF 251

Query:   232 ICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL--KDAG 289
             ICR SFK+P++TKC+HYFC  CAL+H++K+ +CY+C + T G F  A++++ K+  + A 
Sbjct:   252 ICRESFKNPIITKCRHYFCEACALQHYRKSKRCYVCNQQTNGVFNPAKELMAKMLKRQAA 311

Query:   290 D 290
             D
Sbjct:   312 D 312

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RUA4 LOC100514886 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 158/304 (51%), Positives = 214/304 (70%)

Query:     1 MFKK--RQVKQNTRKR------QNDSESESEDETQIVRKEKK-IREDPNFXXXXXXXXXX 51
             +FKK  R+     RKR        DS S S++ + +VR EKK    +P            
Sbjct:    18 LFKKPGRKGAAGRRKRPICDQESGDSSSSSDEGSTVVRPEKKRATHNPMIQKTRGSGKQK 77

Query:    52 XP----QVEDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEK 107
                     E+ E +     +GV YKS +S+   GP DMGATA  E++TE ++DAQAI+E+
Sbjct:    78 AAYGDLSSEEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFER 137

Query:   108 SLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWD 167
             S KI  EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWD
Sbjct:   138 SQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWD 197

Query:   168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDE 222
             YQPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+  SDE
Sbjct:   198 YQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEV-GSDE 256

Query:   223 EDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIV 282
             E+ +PFKC+ICR +F++PV+TKC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++
Sbjct:   257 EE-IPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELI 315

Query:   283 QKLK 286
              KL+
Sbjct:   316 AKLE 319

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|O15541 RNF113A "RING finger protein 113A" [Homo sapiens (taxid:9606)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 157/303 (51%), Positives = 214/303 (70%)

Query:     1 MFKK--RQVKQNTRKRQ------NDSESESEDETQIVRKEKK-IREDPNFXXXXXXXXXX 51
             +FKK  R+     RKR        +S S S++   +VR EKK +  +P            
Sbjct:    18 LFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKRVTHNPMIQKTRDSGKQK 77

Query:    52 XP--QVEDSESDESSCQ-VGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
                  +   E +E+  + +GV YKS +S+   GP DMGATA  E++TE ++DAQAI+E+S
Sbjct:    78 AAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137

Query:   109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
              KI  EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct:   138 QKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197

Query:   169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
             QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+   DEE
Sbjct:   198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEE 257

Query:   224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
               +PFKC+ICR SF++PV+TKC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++ 
Sbjct:   258 --IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315

Query:   284 KLK 286
             KL+
Sbjct:   316 KLE 318

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0038772 CG4973 [Drosophila melanogaster (taxid:7227)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 165/310 (53%), Positives = 218/310 (70%)

Query:     2 FKKRQVKQNT---RKRQNDSESE---SEDETQ-----IVRKE-KKIREDPNFXXXXXXXX 49
             FKKR +K+     RK++  S+     S++ET+     +VR E ++ R +PNF        
Sbjct:    13 FKKRNLKKGAGIRRKKETSSDESAKSSDEETKGKASALVRAENRRKRTNPNFQSTKTMSK 72

Query:    50 XXXPQ--VEDSESDESSC--QVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIY 105
                    V D  S  +S   ++G++YKS++ +   GP D GAT+  E++TE D+DAQAI+
Sbjct:    73 AKRQAGGVGDDGSSSASDDDKLGIAYKSKREALPSGPQDQGATSINEMDTELDRDAQAIH 132

Query:   106 EKSLKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVR 165
              ++LKIN EL+GK DDK+YRG+ NYAQY++K+DTA GNA+SG VR GPIRAPA++R+TVR
Sbjct:   133 ARALKINEELEGKADDKIYRGINNYAQYYKKQDTAAGNASSGMVRSGPIRAPAHLRATVR 192

Query:   166 WDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHE---------DGDNKNYE 216
             WDYQPDICKDYKETG+CGFGDSCKFLHDR+DYK GWQLE +HE         DGD+  YE
Sbjct:   193 WDYQPDICKDYKETGYCGFGDSCKFLHDRSDYKAGWQLEMDHENQRTGDVDSDGDDTKYE 252

Query:   217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR 276
             I  SDEE  LPFKC+ICR SF +PV+TKCKHYFC KCAL  +KK+ +C IC + T G F 
Sbjct:   253 I-HSDEET-LPFKCHICRQSFVNPVVTKCKHYFCEKCALAQYKKSQRCIICSQQTNGIFN 310

Query:   277 TAEKIVQKLK 286
              A++++ +LK
Sbjct:   311 PAKELIARLK 320

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q67ER4 RNF113A "RING finger protein 113A" [Bos taurus (taxid:9913)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 157/303 (51%), Positives = 216/303 (71%)

Query:     1 MFKK--RQVKQNTRKR------QNDSESESEDETQIVRKEKKIR-EDPNFXXXXXXXXXX 51
             +FKK  R+V    RKR        DS S S++   +VR EKK    +P            
Sbjct:    18 LFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTRGSGKQK 77

Query:    52 XP--QVEDSESDESSCQ-VGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKS 108
                  +   E +E+  + +GV YKS +S+   GP DMGATA  E++TE ++DAQAI+E+S
Sbjct:    78 VAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERS 137

Query:   109 LKINAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDY 168
              KI  EL+G+EDDK+YRG+ NY ++ + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDY
Sbjct:   138 QKIQEELRGQEDDKIYRGINNYQKFMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDY 197

Query:   169 QPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEE 223
             QPDICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+  SDEE
Sbjct:   198 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEV-GSDEE 256

Query:   224 DHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQ 283
             + +PFKC+ICR +F++PV+TKC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++ 
Sbjct:   257 E-IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIA 315

Query:   284 KLK 286
             KL+
Sbjct:   316 KLE 318

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RE92 LOC100855580 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 151/283 (53%), Positives = 205/283 (72%)

Query:    17 DSESESEDETQIVRKEKKIR-EDPNFXXX-------XXXXXXXXPQVEDSESDESSCQVG 68
             DS S S++ + +VR EKK    +P                     + E+ E +  S  +G
Sbjct:    43 DSSSSSDEGSTVVRPEKKRAIHNPMIQKTRGSGKQKAAYGDLSSEEEEEKEEENESESLG 102

Query:    69 VSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLA 128
             V YKS +S+   GP DMGATA  E++TE ++DAQAI+E+S KI  EL+GKEDDK+YRG+ 
Sbjct:   103 VVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGIN 162

Query:   129 NYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSC 188
             NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDYQPDICKDYKETGFCGFGDSC
Sbjct:   163 NYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSC 222

Query:   189 KFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMT 243
             KFLHDR+DYK+GWQ+E+E ++G     +++NYE+   DEE  +PFKC+ICR +F++PV+T
Sbjct:   223 KFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEE--IPFKCFICRQTFQNPVVT 280

Query:   244 KCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
             KC+HYFC  CAL+HF+ TP+CY+C + T G F  A++++ KL+
Sbjct:   281 KCRHYFCESCALQHFRTTPRCYVCDQQTNGVFNPAKELIAKLE 323

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5PPN1 Rnf113a1 "Ring finger protein 113A1" [Rattus norvegicus (taxid:10116)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 156/300 (52%), Positives = 212/300 (70%)

Query:     1 MFKK--RQVKQNTRKR------QNDSESESEDETQIVRKEKK-IREDPNFXXXXXXXXXX 51
             +FKK  R+     RKR        DS S S++ + +VR EKK    +P            
Sbjct:    18 LFKKPGRKGTAGRRKRPLCDEGSGDSGSSSDEGSAVVRPEKKQATHNPMIQKTRGSAKQK 77

Query:    52 XPQVEDSESDESSCQ-VGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLK 110
                   S  DE+  + +GV+YKS +S+   GP DMGATA  E++TE ++DAQ+I+E+S K
Sbjct:    78 TNYGGLSSEDENEPEGLGVTYKSTRSAKPVGPEDMGATAVYELDTEKERDAQSIFERSQK 137

Query:   111 INAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQP 170
             I  EL+GKEDDK+YRG+ NY +Y + KDT+ GNA+SG VRKGPIRAP ++R+TVRWDYQP
Sbjct:   138 IQEELRGKEDDKIYRGINNYQKYVKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQP 197

Query:   171 DICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDH 225
             DICKDYKETGFCGFGDSCKFLHDR+DYK+GWQ+E+E ++G     +++NYE+   DEE  
Sbjct:   198 DICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEE-- 255

Query:   226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
             +PFKC+ICR +F++PV+TKC+HYFC  CAL+HF+ T +CY+C + T G F  A++++ KL
Sbjct:   256 IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTSRCYVCDQQTNGVFNPAKELIAKL 315

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BF77 LOC518027 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 145/278 (52%), Positives = 195/278 (70%)

Query:    18 SESESEDE-TQIVRKEKKIR-EDPNFXXXXXXXXXXXPQVEDSESDE--SSCQVGVSYKS 73
             S S S DE  ++VR EKK     P                  S  +E      +GV YKS
Sbjct:    51 SSSSSGDEGNRVVRPEKKRAIHTPMIQKTWGGGKQKGASGNRSSEEEVEEPESLGVVYKS 110

Query:    74 RKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDKVYRGLANYAQY 133
              +S+   GP DMGATA  E++TE ++DAQAI+E+S KI  EL+GKEDDK+YRG+ NY +Y
Sbjct:   111 TRSAKPVGPEDMGATAVYELDTEKERDAQAIFERSRKIREELRGKEDDKIYRGMNNYQKY 170

Query:   134 FEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHD 193
                KD + G+ +SG  RKGPIRAP ++R+TVRWDYQPDICKDYKETGFCGFGDSCKFLHD
Sbjct:   171 MRPKDASAGSDSSGMARKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHD 230

Query:   194 RTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHY 248
             R+DYK+GWQ+++E ++G     +++NYE+   +EE  LPFKC+ICR +F++PV+TKC+HY
Sbjct:   231 RSDYKHGWQIQRELDEGRYGVDEDENYEVARDEEE--LPFKCFICRQTFQNPVVTKCRHY 288

Query:   249 FCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
             FC  CAL+HF+ T +CY+C + T G F  A++++ KL+
Sbjct:   289 FCEGCALQHFRTTSRCYVCDQQTNGVFNPAKELIAKLE 326

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RGA7 LOC480186 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 131/240 (54%), Positives = 179/240 (74%)

Query:    53 PQVEDSESDESSCQ-VGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKI 111
             P  E+  ++E   Q +GV+Y+S +S+   GP D+GATA  E +   ++DAQAI+E+S KI
Sbjct:    88 PSSEEEGAEEPEAQSLGVAYRSTRSATPAGPGDVGATARSEPDPGEERDAQAIFERSRKI 147

Query:   112 NAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPD 171
               EL+ KEDDK+YRG  NY +Y + KDT+ G A+SG VRKGPIRAP +  +TVRWDYQPD
Sbjct:   148 QEELRPKEDDKIYRGSNNYQKYMKPKDTSLGRASSGMVRKGPIRAPEHPCATVRWDYQPD 207

Query:   172 ICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDG-----DNKNYEIPDSDEEDHL 226
              CKD+KETGFCGFGDSCKFLHDR+DYK+GWQ+E+E EDG      ++NY++   DEE  +
Sbjct:   208 TCKDFKETGFCGFGDSCKFLHDRSDYKHGWQVERELEDGRYGVYGDENYDVGSDDEE--I 265

Query:   227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLK 286
             P +C ICR +F++PV+T+C+HYFC  CAL HF+ TP+CY+C + T G F  A++++ KL+
Sbjct:   266 PLRCLICRQTFENPVVTRCRHYFCESCALRHFRTTPRCYVCDQQTNGVFNPAKELIAKLE 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O15541	R113A_HUMAN	No assigned EC number	0.5123	0.7444	0.8746	yes	N/A
O17917	RN113_CAEEL	No assigned EC number	0.4689	0.6674	0.7005	yes	N/A
Q67ER4	R113A_BOVIN	No assigned EC number	0.5170	0.7419	0.8717	yes	N/A
Q9FNG6	C3H51_ARATH	No assigned EC number	0.4089	0.6699	0.7142	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	403
COG5152	259	COG5152, COG5152, Uncharacterized conserved protei	4e-35
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-10
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-07
smart00184	40	smart00184, RING, Ring finger	1e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-06
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	2e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-05
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	4e-05
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	6e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.003

>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

 Score =  129 bits (326), Expect = 4e-35
 Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 3   KKRQVKQNTRKRQNDSESESEDETQIVRKEKKIREDPNFQKTTKQTKAAKPQVEDSESDE 62
           K    ++N +KRQ  + SE +       +EK   +  +  K                 + 
Sbjct: 9   KSSSDEKNQKKRQKINFSEEKLVAS--DEEKGSSDLMSLAK---------------SGNS 51

Query: 63  SSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDAQAIYEKSLKINAELKGKEDDK 122
            + Q+    + +     +   D+        +  T +D      K L   A+ +   DD 
Sbjct: 52  RTLQLSHENEGKLQKKGE---DLDKYTLTVNDDSTKEDLLNFERKELAEKAKKRRPSDDN 108

Query: 123 VYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETGFC 182
                 +       K   Q               P   R     D QPD+CKDYKETG+C
Sbjct: 109 ELVLNMSGKNKRLTKQINQ---------------PTMFRDGEVIDTQPDVCKDYKETGYC 153

Query: 183 GFGDSCKFLHDRTDYKYGWQLEQE----HEDGDNKNYEIPDSDEEDHLPFKCYICRNSFK 238
           G+GDSCKFLHDR+D+K GW+L QE    +E+    +           +PF C IC+  ++
Sbjct: 154 GYGDSCKFLHDRSDFKTGWKLNQEWNAEYEEAPVISGPGEK------IPFLCGICKKDYE 207

Query: 239 DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
            PV+T+C H FC+ CA+  ++K  +C +C K T+G F     + + L  
Sbjct: 208 SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK 256

Length = 259

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 227 PFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQK 269
             +C IC +  +DPV+ T C H FC +C L + KK  KC IC+ 
Sbjct: 2   ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 229 KCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQKNT 271
           +C IC   F++PV+   C H FC  C  +  K     C +C+   
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 230 CYICRNSF-KDPVMTKCKHYFCTKCALEHFK-KTPKCYIC 267
           C IC   + KDPV+  C H FC  C  +  +     C IC
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 230 CYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
           C IC + F+     V+  C H F  +C  +  + +  C +C+ 
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDR 194
           Y+ ++C+ +  TG C +GD CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFK-KTPKCYIC 267
           C IC    KDPV +  C H FC+KC L   +     C +C
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
            +C+IC++ F  PV+T C H FC+ C        PKC +C
Sbjct: 27  LRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLC 66

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 167 DYQPDICKDYKETGFCGFGDSCKFLHDR 194
            Y+ ++CK +K  G+C  GD CKF H  
Sbjct: 1   KYKTELCKFFK-RGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 229 KCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQK 269
            C IC    ++ V   C H   C +CA +  +   KC IC++
Sbjct: 4   LCVICLERPRNVVFLPCGHLCLCEECA-KRLRSKKKCPICRQ 44

Length = 49

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 16/59 (27%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC----------------ALEHFKKTPKCYICQKN 270
           F C IC +  +DPV+T C H FC  C                  +H ++ PKC +C+ +
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77

Length = 193

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
           +C IC      P  T C H FC+ C   H    P C +C
Sbjct: 27  RCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVC 65

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG1813|consensus	313		100.0
COG5152	259	Uncharacterized conserved protein, contains RING a	100.0
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.09
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.02
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.96
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.94
KOG0317|consensus	293		98.9
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.88
KOG0823|consensus	230		98.85
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.83
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.83
PHA02929	238	N1R/p28-like protein; Provisional	98.78
KOG0287|consensus	442		98.75
KOG0320|consensus	187		98.75
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.74
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.69
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.62
PHA02926	242	zinc finger-like protein; Provisional	98.6
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.59
PF14634	44	zf-RING_5: zinc-RING finger domain	98.52
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.5
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.46
KOG2164|consensus	513		98.45
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.43
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.39
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.36
KOG1039|consensus	344		98.36
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.33
KOG2177|consensus	386		98.32
KOG0978|consensus	698		98.31
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.22
KOG4628|consensus	348		98.01
smart00356	27	ZnF_C3H1 zinc finger.	97.96
KOG4159|consensus	398		97.85
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.83
KOG0311|consensus	381		97.82
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.77
KOG0802|consensus	543		97.75
KOG0824|consensus	324		97.74
KOG2660|consensus	331		97.74
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.72
PHA03096	284	p28-like protein; Provisional	97.63
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.56
KOG4172|consensus	62		97.52
KOG4265|consensus	349		97.36
KOG2879|consensus	298		97.18
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.17
KOG0297|consensus	391		97.15
KOG0825|consensus	1134		97.0
KOG0828|consensus	636		96.98
KOG0804|consensus	493		96.98
KOG0827|consensus	465		96.83
KOG4739|consensus	233		96.67
KOG1002|consensus	791		96.58
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	96.51
KOG4692|consensus	489		96.51
KOG1645|consensus	463		96.49
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.38
KOG1734|consensus	328		96.37
KOG4367|consensus	699		96.2
KOG1571|consensus	355		96.05
KOG1493|consensus	84		96.01
KOG1785|consensus	563		95.97
PF04641	260	Rtf2: Rtf2 RING-finger	95.94
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.8
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.64
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.62
KOG4185|consensus	296		95.55
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.55
KOG3039|consensus	303		95.13
KOG1677|consensus	332		95.05
KOG4275|consensus	350		94.95
KOG1001|consensus	674		94.67
KOG0826|consensus	357		94.42
KOG2932|consensus	389		94.3
KOG3800|consensus	300		94.18
KOG1814|consensus	445		94.18
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.03
KOG2930|consensus	114		93.5
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	93.03
KOG3970|consensus	299		92.75
KOG4445|consensus	368		92.58
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	92.23
KOG0298|consensus	1394		91.88
KOG1941|consensus	518		91.67
KOG2114|consensus	933		91.51
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	90.84
KOG3002|consensus	299		90.44
KOG4362|consensus	684		89.51
COG5175	480	MOT2 Transcriptional repressor [Transcription]	89.49
KOG2817|consensus	394		89.27
KOG3039|consensus	303		89.23
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	88.9
KOG3161|consensus	861		88.16
KOG1940|consensus	276		88.04
KOG1428|consensus	3738		87.54
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	87.0
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	86.59
KOG3113|consensus	293		86.38
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	86.05
KOG1100|consensus	207		85.96
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	85.34
KOG2034|consensus	911		84.8
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	84.43
KOG1039|consensus	344		84.19
KOG2185|consensus	486		82.53
KOG1677|consensus	332		80.72
KOG3579|consensus	352		80.27

>KOG1813|consensus

Probab=100.00  E-value=4.1e-67  Score=502.65  Aligned_cols=262  Identities=44%  Similarity=0.742  Sum_probs=235.3

Q ss_pred             cccc-ccccccCCCCCccccccccccCC--CCC-CCCccccccCccceEEeecCCcCCCCCCCCCCccccccccccchhH
Q psy16818         26 TQIV-RKEKKIREDPNFQKTTKQTKAAK--PQV-EDSESDESSCQVGVSYKSRKSSARDGPSDMGATATLEIETETDKDA  101 (403)
Q Consensus        26 ~~v~-~~~~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~d~  101 (403)
                      ++++ .++..+..|||+|+|+.+.+...  ..+ ..+.+....+.+.|+|.|.+++.+.||.|+|||+++|.+|+..+||
T Consensus        39 ~~s~r~ek~~k~~~p~~q~~k~~~k~~~~~~~~s~~s~~~~~~ed~vv~y~s~~~~~~~g~~dsgat~t~e~~te~~~Da  118 (313)
T KOG1813|consen   39 NESSRLEKLEKKIKPETQRKKETDKVLTGEEDDSALSICQNPFEDPVVTYCSCDKCALKGHTDSGATATLEEPTEGLRDA  118 (313)
T ss_pred             cchhhhhhhhhhcchHhhhhhhhcccccccccccccccccCcccccceeeccccccccCCccccCceeEeecCcccchhH
Confidence            4455 77778889999999998876431  111 1222222346689999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhhhcCCCCchhhhhhhhhhhhhhcccccccCCCCCccccccccCCcceeeeeeccCCCccchhhhhhc
Q psy16818        102 QAIYEKSLK-INAELKGKEDDKVYRGLANYAQYFEKKDTAQGNAASGFVRKGPIRAPANVRSTVRWDYQPDICKDYKETG  180 (403)
Q Consensus       102 ~~~~~~~~~-~~~~~~~~~~~~~y~g~~~y~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG  180 (403)
                      |+|++++++ +++++.|+.++.+|+|+++|.+|.++.+++.+|+++|+++  |||||+|+|++++|||||||||||++||
T Consensus       119 qa~~er~~k~~~e~~~~k~~~~lykg~~~ya~~~k~~~~~~~n~s~g~~r--pira~~~~r~~~~~d~qpDicKdykeTg  196 (313)
T KOG1813|consen  119 QAIIERRIKEEREKLRGKKDTKLYKGINTYADDAKAQKVVKMNESIGTVR--PIRAAMHTRAGERIDYQPDICKDYKETG  196 (313)
T ss_pred             HHHhhhhHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc--ccchhhhhcccceeecCchhhhhhHhhC
Confidence            999999999 8899999889999999999999999999999999999987  9999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCccccCcccccccccccccCcCCCCCCcCCCCccccccccccccCCcccccCCcccHHhHHHHhcc
Q psy16818        181 FCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK  260 (403)
Q Consensus       181 ~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~  260 (403)
                      ||||||||+|||+|+||++||+|+.+|+...+..+.+.. |++. +||.|.||...|.+||++.|+|+||..|....+++
T Consensus       197 ycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke~~~~~~~-D~~~-~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk  274 (313)
T KOG1813|consen  197 YCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKEKKRVKIE-DIEL-LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK  274 (313)
T ss_pred             cccccchhhhhhhhhhccccceeehhhhccccccceecC-Cccc-CCccccccccccccchhhcCCceeehhhhcccccc
Confidence            999999999999999999999999999988888887765 5566 99999999999999999999999999999999999


Q ss_pred             CCCccccCccccccccchHHHHHHHHHHhhH
Q psy16818        261 TPKCYICQKNTFGEFRTAEKIVQKLKDAGDI  291 (403)
Q Consensus       261 ~~~CP~Cr~~~~~~~~~~~~Li~~l~~~~~~  291 (403)
                      ...|++|.+++.++|+++.+|+..|+..+..
T Consensus       275 ~~~c~vC~~~t~g~~~~akeL~~~L~~kks~  305 (313)
T KOG1813|consen  275 GEKCYVCSQQTHGSFNVAKELLVSLKLKKSD  305 (313)
T ss_pred             CCcceecccccccccchHHHHHHHHHhhhhh
Confidence            9999999999999999999999998876443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=100.00  E-value=7.1e-42  Score=312.40  Aligned_cols=134  Identities=43%  Similarity=0.937  Sum_probs=119.6

Q ss_pred             cccCCcceeeeeeccCCCccchhhhhhcCCCCCCccccccCCCccccCcccccccccccccCcCCCCCCcCCCCcccccc
Q psy16818        153 PIRAPANVRSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYI  232 (403)
Q Consensus       153 p~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~I  232 (403)
                      .|-.|++||+++.+||||||||||++||||||||+|+|||+|+||+.||+|+++|.+.-++...+.. +-|+ +||.|.|
T Consensus       124 ~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA~~Ee~~v~~~-~~e~-IPF~C~i  201 (259)
T COG5152         124 QINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNAEYEEAPVISG-PGEK-IPFLCGI  201 (259)
T ss_pred             hccCCceeeccceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcchhhhcccccC-CCCC-Cceeehh
Confidence            4556699999999999999999999999999999999999999999999999999965555444433 4456 9999999


Q ss_pred             ccccccCCcccccCCcccHHhHHHHhccCCCccccCccccccccchHHHHHHHHHH
Q psy16818        233 CRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKDA  288 (403)
Q Consensus       233 C~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~Li~~l~~~  288 (403)
                      |...|..||++.|||+||..|+...+++...|.+|++.+.+.|..+.++...|.+.
T Consensus       202 CKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~R  257 (259)
T COG5152         202 CKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNKR  257 (259)
T ss_pred             chhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhhc
Confidence            99999999999999999999999999999999999999999999888877766543

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.09  E-value=4.4e-11  Score=85.34  Aligned_cols=38  Identities=42%  Similarity=0.919  Sum_probs=30.8

Q ss_pred             cccccccccCCcccccCCcccHHhHHHHhccC----CCcccc
Q psy16818        230 CYICRNSFKDPVMTKCKHYFCTKCALEHFKKT----PKCYIC  267 (403)
Q Consensus       230 C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~----~~CP~C  267 (403)
                      |+||+++|.+|++++|||+||..||..|+...    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999999843    469987

>smart00504 Ubox Modified RING finger domain

Probab=99.02  E-value=3.5e-10  Score=86.10  Aligned_cols=57  Identities=12%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHH
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQK  284 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~  284 (403)
                      +.|+||.+.+.+|++++|||+||..||..|+.....||+|+.++. ..+.++..|...
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~   59 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSA   59 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHH
Confidence            689999999999999999999999999999988888999999884 344444444443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.96  E-value=2.7e-10  Score=79.57  Aligned_cols=38  Identities=45%  Similarity=1.138  Sum_probs=34.0

Q ss_pred             cccccccccCC-cccccCCcccHHhHHHHhccCCCcccc
Q psy16818        230 CYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYIC  267 (403)
Q Consensus       230 C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~C  267 (403)
                      |+||++.+.+| ++++|||+||..|+.+|+.....||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 688999999999999999988899998

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.94  E-value=6e-10  Score=103.61  Aligned_cols=47  Identities=36%  Similarity=0.843  Sum_probs=41.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc----------------CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK----------------TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~----------------~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+|++++|||.||+.||..|+..                ...||+|+..+.
T Consensus        17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            45889999999999999999999999999999741                357999999884

>KOG0317|consensus

Probab=98.90  E-value=5.8e-10  Score=108.48  Aligned_cols=47  Identities=30%  Similarity=0.717  Sum_probs=43.7

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ....|.+|++...+|..|||||.||++||..|......||+||..+.
T Consensus       238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence            44789999999999999999999999999999999889999999874

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.88  E-value=8.5e-10  Score=81.07  Aligned_cols=46  Identities=35%  Similarity=0.753  Sum_probs=40.9

Q ss_pred             cccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      ..|.||++.+.++++++|||. ||..|+.+|+.....||+||+++..
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            469999999999999999999 9999999999988999999998754

...

>KOG0823|consensus

Probab=98.85  E-value=9.3e-10  Score=104.23  Aligned_cols=47  Identities=34%  Similarity=0.789  Sum_probs=42.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc---CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~~  272 (403)
                      -.|.|.||++..++||+|.|||.||+.||.+|+..   ...||+|+..+.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            66899999999999999999999999999999973   456999999873

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.83  E-value=3.4e-09  Score=108.65  Aligned_cols=62  Identities=32%  Similarity=0.833  Sum_probs=50.0

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc-cccch---HHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG-EFRTA---EKIVQKLKD  287 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~-~~~~~---~~Li~~l~~  287 (403)
                      ..+.|+||++.|.+|++++|||.||..||..|+.....||+|+..+.. .+..+   .+|++.+..
T Consensus        25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            447899999999999999999999999999999887789999998853 23333   445555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.83  E-value=9.8e-10  Score=78.56  Aligned_cols=40  Identities=33%  Similarity=0.795  Sum_probs=35.0

Q ss_pred             cccccccccc---CCcccccCCcccHHhHHHHhccCCCccccC
Q psy16818        229 KCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKTPKCYICQ  268 (403)
Q Consensus       229 ~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr  268 (403)
                      .|+||++.|.   .++.++|||.||..||..|+.....||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            4999999995   346789999999999999999989999996

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.78  E-value=3.1e-09  Score=102.29  Aligned_cols=49  Identities=24%  Similarity=0.659  Sum_probs=41.8

Q ss_pred             cccccccccccCC--------cccccCCcccHHhHHHHhccCCCccccCcccccccc
Q psy16818        228 FKCYICRNSFKDP--------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR  276 (403)
Q Consensus       228 l~C~IC~~~~~~P--------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~  276 (403)
                      ..|+||++.+.++        ++++|+|.||..||.+|+.....||+||..+..+++
T Consensus       175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~  231 (238)
T PHA02929        175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK  231 (238)
T ss_pred             CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence            4699999987653        467899999999999999988999999999876543

>KOG0287|consensus

Probab=98.75  E-value=4.2e-09  Score=104.33  Aligned_cols=46  Identities=30%  Similarity=0.758  Sum_probs=43.7

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      -+.|.||.++|..|++++|+|+||.-||+.++...+.||.|..++.
T Consensus        23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence            4789999999999999999999999999999999999999999884

>KOG0320|consensus

Probab=98.75  E-value=3.3e-09  Score=96.90  Aligned_cols=46  Identities=43%  Similarity=0.946  Sum_probs=41.0

Q ss_pred             CccccccccccccC--CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        226 LPFKCYICRNSFKD--PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~--Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      .-+.|+||+..+..  |+.++|||.||..||...++....||+|++.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI  177 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKI  177 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence            34899999999964  66799999999999999999999999999865

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.74  E-value=4.5e-09  Score=73.68  Aligned_cols=38  Identities=39%  Similarity=1.028  Sum_probs=35.2

Q ss_pred             cccccccccCCc-ccccCCcccHHhHHHHhc--cCCCcccc
Q psy16818        230 CYICRNSFKDPV-MTKCKHYFCTKCALEHFK--KTPKCYIC  267 (403)
Q Consensus       230 C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~--~~~~CP~C  267 (403)
                      |+||++.+..|+ +++|||.||..|+.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999998  56679988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.69  E-value=1.6e-08  Score=80.18  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc-cccchHHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG-EFRTAEKIVQKLKDA  288 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~-~~~~~~~Li~~l~~~  288 (403)
                      .|.|+||.+++.+||+++|||+|+..||..|+.. ...||.|+.++.. .+.++..|...+...
T Consensus         4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            4899999999999999999999999999999997 7889999998854 566676666655544

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-08  Score=99.37  Aligned_cols=47  Identities=30%  Similarity=0.769  Sum_probs=44.1

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .-+.|.||...|..|+.|+|||.||.-||+.++...+.||+||.+..
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            44789999999999999999999999999999999999999999883

>PHA02926 zinc finger-like protein; Provisional

Probab=98.60  E-value=2.3e-08  Score=94.58  Aligned_cols=48  Identities=23%  Similarity=0.560  Sum_probs=38.4

Q ss_pred             cccccccccccC---------CcccccCCcccHHhHHHHhcc------CCCccccCccccccc
Q psy16818        228 FKCYICRNSFKD---------PVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTFGEF  275 (403)
Q Consensus       228 l~C~IC~~~~~~---------Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~~~~  275 (403)
                      ..|+||++....         +++.+|+|.||..||..|...      ...||+||..+..+.
T Consensus       171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            359999998643         367799999999999999874      245999999986543

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.59  E-value=3e-08  Score=68.98  Aligned_cols=42  Identities=33%  Similarity=0.907  Sum_probs=36.6

Q ss_pred             ccccccccccCCcccc-cCCcccHHhHHHHhcc-CCCccccCcc
Q psy16818        229 KCYICRNSFKDPVMTK-CKHYFCTKCALEHFKK-TPKCYICQKN  270 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~-~~~CP~Cr~~  270 (403)
                      .|+||++.+..++.+. |||.||..|+..|+.. ...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999997777654 9999999999999986 6789999875

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.52  E-value=5e-08  Score=69.98  Aligned_cols=41  Identities=41%  Similarity=0.955  Sum_probs=35.2

Q ss_pred             ccccccccc---cCCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818        229 KCYICRNSF---KDPVMTKCKHYFCTKCALEHFKKTPKCYICQK  269 (403)
Q Consensus       229 ~C~IC~~~~---~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~  269 (403)
                      .|+||.+.+   ..|++++|||+||..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            389999999   34689999999999999998855678999985

>smart00184 RING Ring finger

Probab=98.50  E-value=7e-08  Score=64.77  Aligned_cols=38  Identities=42%  Similarity=0.989  Sum_probs=34.6

Q ss_pred             cccccccccCCcccccCCcccHHhHHHHhc-cCCCcccc
Q psy16818        230 CYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYIC  267 (403)
Q Consensus       230 C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~C  267 (403)
                      |+||++....+++++|||.||..|+..|+. ....||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            889999988999999999999999999998 55679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.46  E-value=6.1e-08  Score=69.64  Aligned_cols=35  Identities=40%  Similarity=0.940  Sum_probs=22.4

Q ss_pred             cccccccccC----CcccccCCcccHHhHHHHhccC----CCcc
Q psy16818        230 CYICRNSFKD----PVMTKCKHYFCTKCALEHFKKT----PKCY  265 (403)
Q Consensus       230 C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~----~~CP  265 (403)
                      |+||.+ |.+    |++|+|||+||..|+.+++...    .+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 887    8999999999999999998743    3566

>KOG2164|consensus

Probab=98.45  E-value=8e-08  Score=99.91  Aligned_cols=46  Identities=33%  Similarity=0.740  Sum_probs=40.7

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhccC-----CCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-----PKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-----~~CP~Cr~~~~  272 (403)
                      +..||||++...-|+.|.|||.||..||+++|...     ..||+|+..+.
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~  236 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT  236 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence            35799999999999999999999999999999743     46999999884

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.7e-08  Score=92.87  Aligned_cols=46  Identities=33%  Similarity=0.841  Sum_probs=40.5

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHH-HhccCCC-ccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALE-HFKKTPK-CYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~-~~~~~~~-CP~Cr~~~~  272 (403)
                      .+.|+||++....|+.++|||.||+.||.. |-.+... ||+||+...
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            378999999999999999999999999999 7665555 999998653

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.39  E-value=1.3e-07  Score=73.23  Aligned_cols=52  Identities=25%  Similarity=0.803  Sum_probs=26.2

Q ss_pred             cccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccc-cccccchHHH
Q psy16818        228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNT-FGEFRTAEKI  281 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~-~~~~~~~~~L  281 (403)
                      +.|++|...+..||. ..|.|.||+.|+...+.  ..||+|..+. ...+..+..|
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqL   61 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQL   61 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHH
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhh
Confidence            689999999999985 68999999999977544  4599999987 3444444443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.36  E-value=2.7e-07  Score=73.41  Aligned_cols=39  Identities=33%  Similarity=0.910  Sum_probs=33.2

Q ss_pred             cccccccccCC------------c-ccccCCcccHHhHHHHhccCCCccccC
Q psy16818        230 CYICRNSFKDP------------V-MTKCKHYFCTKCALEHFKKTPKCYICQ  268 (403)
Q Consensus       230 C~IC~~~~~~P------------v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr  268 (403)
                      |.||++.|.+|            + ..+|||.|+..||.+|+.....||+||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            99999999433            2 348999999999999999888999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1039|consensus

Probab=98.36  E-value=1.7e-07  Score=94.64  Aligned_cols=98  Identities=17%  Similarity=0.433  Sum_probs=69.4

Q ss_pred             hhhhhcCCCCCCccccccCCCccccCccccccccccc-----------------ccCcCCCCCCcCCCCccccccccccc
Q psy16818        175 DYKETGFCGFGDSCKFLHDRTDYKYGWQLEQEHEDGD-----------------NKNYEIPDSDEEDHLPFKCYICRNSF  237 (403)
Q Consensus       175 dYk~tG~CgfGDsCkflHdr~dy~~gwqle~e~e~~~-----------------~~~~ei~~~deed~~~l~C~IC~~~~  237 (403)
                      +|-.-|-|.||..|.++|......+|.+..++.....                 +..+....     .....|.||++..
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~-----s~~k~CGICme~i  171 (344)
T KOG1039|consen   97 PYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQK-----SSEKECGICMETI  171 (344)
T ss_pred             ccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCc-----cccccceehhhhc
Confidence            5556889999999999998766667766555554111                 00111111     1235799999988


Q ss_pred             cCCc--------ccccCCcccHHhHHHHhc--c-----CCCccccCccccccccc
Q psy16818        238 KDPV--------MTKCKHYFCTKCALEHFK--K-----TPKCYICQKNTFGEFRT  277 (403)
Q Consensus       238 ~~Pv--------~t~CgH~FC~~Ci~~~~~--~-----~~~CP~Cr~~~~~~~~~  277 (403)
                      ..+.        +.+|.|.||..||..|..  .     ++.||.||.....+.+.
T Consensus       172 ~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS  226 (344)
T KOG1039|consen  172 NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS  226 (344)
T ss_pred             cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence            7654        368999999999999984  3     57899999999766554

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.33  E-value=4.4e-06  Score=83.15  Aligned_cols=44  Identities=25%  Similarity=0.668  Sum_probs=35.1

Q ss_pred             cccccccc-ccCCc---cc-ccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        229 KCYICRNS-FKDPV---MT-KCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~-~~~Pv---~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      .||||... +.+|.   ++ +|||.||.+|+...|. ....||.|+.++.
T Consensus         5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            69999984 55663   22 7999999999999775 4457999999883

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177|consensus

Probab=98.32  E-value=2.1e-07  Score=87.48  Aligned_cols=44  Identities=30%  Similarity=0.843  Sum_probs=39.9

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK  269 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~  269 (403)
                      ..+.|+||++.|..|.+++|||+||..|+..++.....||.|+.
T Consensus        12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            45789999999999999999999999999999885567999995

>KOG0978|consensus

Probab=98.31  E-value=1.8e-07  Score=101.24  Aligned_cols=47  Identities=34%  Similarity=0.818  Sum_probs=42.7

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      .-+.|++|..-|.+.|++.|||.||..|+...+. ..++||.|+..|+
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG  689 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            3479999999999999999999999999999987 5688999999985

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.22  E-value=5e-07  Score=58.50  Aligned_cols=27  Identities=41%  Similarity=1.088  Sum_probs=21.5

Q ss_pred             CCCccchhhhhhcCCCCCCccccccCC
Q psy16818        168 YQPDICKDYKETGFCGFGDSCKFLHDR  194 (403)
Q Consensus       168 yqpdiCkdYk~tG~CgfGDsCkflHdr  194 (403)
                      |...+|+.|.++|.|.||++|.|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            456799999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4628|consensus

Probab=98.01  E-value=2.6e-06  Score=86.02  Aligned_cols=46  Identities=22%  Similarity=0.608  Sum_probs=39.8

Q ss_pred             CccccccccccccCC---cccccCCcccHHhHHHHhccCCC-ccccCccc
Q psy16818        226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPK-CYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~-CP~Cr~~~  271 (403)
                      .+..|.||++.|..-   .+|||+|.|+..||..|+...++ ||+|+..+
T Consensus       228 ~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di  277 (348)
T KOG4628|consen  228 ATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI  277 (348)
T ss_pred             CCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence            347999999999754   47899999999999999987755 99999977

>smart00356 ZnF_C3H1 zinc finger

Probab=97.96  E-value=3.9e-06  Score=53.44  Aligned_cols=26  Identities=42%  Similarity=1.186  Sum_probs=23.5

Q ss_pred             CCCccchhhhhhcCCCCCCccccccCC
Q psy16818        168 YQPDICKDYKETGFCGFGDSCKFLHDR  194 (403)
Q Consensus       168 yqpdiCkdYk~tG~CgfGDsCkflHdr  194 (403)
                      |++.+|++| ++|.|.+|++|.|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            567799999 99999999999999973

>KOG4159|consensus

Probab=97.85  E-value=6.7e-06  Score=84.72  Aligned_cols=49  Identities=27%  Similarity=0.781  Sum_probs=44.9

Q ss_pred             CCccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        225 HLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       225 ~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      ..+|.|.||...+..||+++|||.||..||.+.+.....||.|+..+..
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            4679999999999999999999999999999988888899999999853

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=1.1e-05  Score=81.29  Aligned_cols=44  Identities=23%  Similarity=0.633  Sum_probs=38.9

Q ss_pred             cccccccccc-cC------------CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        228 FKCYICRNSF-KD------------PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~-~~------------Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ..|.||++.+ ..            |..++|||.|+..|+..|+.....||+||.++
T Consensus       288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            5799999874 32            36889999999999999999999999999996

>KOG0311|consensus

Probab=97.82  E-value=4.1e-06  Score=83.94  Aligned_cols=47  Identities=28%  Similarity=0.712  Sum_probs=41.3

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||+.+++...++ .|+|.||..||...++ ....||.||+.+.
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            668999999999988766 6999999999988877 4678999999984

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.2e-05  Score=79.32  Aligned_cols=47  Identities=23%  Similarity=0.523  Sum_probs=39.4

Q ss_pred             CccccccccccccC---CcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      ....|.||++.|..   -++|||.|.|+..|+.+|+. -...||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            34579999999853   25889999999999999998 5678999998764

>KOG0802|consensus

Probab=97.75  E-value=9.4e-06  Score=86.97  Aligned_cols=45  Identities=24%  Similarity=0.601  Sum_probs=41.3

Q ss_pred             ccccccccccccC-----CcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        227 PFKCYICRNSFKD-----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       227 ~l~C~IC~~~~~~-----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ...|+||.+.+..     |..++|+|.||..|+..|++....||.||..+
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            3579999999988     78999999999999999999999999999954

>KOG0824|consensus

Probab=97.74  E-value=1.4e-05  Score=78.77  Aligned_cols=54  Identities=26%  Similarity=0.543  Sum_probs=44.3

Q ss_pred             ccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccccccchHHHH
Q psy16818        229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFGEFRTAEKIV  282 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~Li  282 (403)
                      .|+||+....-|+.+.|+|.||.-||...+... ..|++||.++...|-....+.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~   63 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLK   63 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhh
Confidence            499999999999999999999999999887754 459999999976554433333

>KOG2660|consensus

Probab=97.74  E-value=1.2e-05  Score=79.99  Aligned_cols=49  Identities=22%  Similarity=0.621  Sum_probs=43.5

Q ss_pred             CccccccccccccCCc-ccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818        226 LPFKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      .-+.|.+|..+|.++. ++.|-|+||.+||..++.....||.|...+.+.
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            4468999999999997 458999999999999999999999999988654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.72  E-value=2.1e-05  Score=64.35  Aligned_cols=43  Identities=35%  Similarity=0.831  Sum_probs=33.4

Q ss_pred             cccccccccc-----------C-Cccc-ccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818        229 KCYICRNSFK-----------D-PVMT-KCKHYFCTKCALEHFKK---TPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~-----------~-Pv~t-~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~  271 (403)
                      .|+||+..|.           + |+++ .|+|.|+..||.+|+..   ...||+||++.
T Consensus        23 ~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   23 VCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             ceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            3777777764           1 4433 89999999999999984   35799999875

>PHA03096 p28-like protein; Provisional

Probab=97.63  E-value=8.5e-06  Score=80.62  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=50.5

Q ss_pred             CCCCCCccccccCCCccccCcccccccccccccCcC---CCCCCcCCCCccccccccccccC--------CcccccCCcc
Q psy16818        181 FCGFGDSCKFLHDRTDYKYGWQLEQEHEDGDNKNYE---IPDSDEEDHLPFKCYICRNSFKD--------PVMTKCKHYF  249 (403)
Q Consensus       181 ~CgfGDsCkflHdr~dy~~gwqle~e~e~~~~~~~e---i~~~deed~~~l~C~IC~~~~~~--------Pv~t~CgH~F  249 (403)
                      .|.+|++|.|||+...-+.|-+.....+.++..+..   +....... .--.|.||++....        .+...|.|.|
T Consensus       130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~-~~k~c~ic~e~~~~k~~~~~~fgil~~c~h~f  208 (284)
T PHA03096        130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLL-LSKICGICLENIKAKYIIKKYYGILSEIKHEF  208 (284)
T ss_pred             hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHH-HHhhcccchhhhhhhccccccccccccCCcHH
Confidence            599999999999987777776655555522211100   00000000 01469999997642        1455899999


Q ss_pred             cHHhHHHHhcc
Q psy16818        250 CTKCALEHFKK  260 (403)
Q Consensus       250 C~~Ci~~~~~~  260 (403)
                      |..|+..|...
T Consensus       209 c~~ci~~wr~~  219 (284)
T PHA03096        209 NIFCIKIWMTE  219 (284)
T ss_pred             HHHHHHHHHHh
Confidence            99999999863

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.56  E-value=3.1e-05  Score=58.94  Aligned_cols=41  Identities=32%  Similarity=0.698  Sum_probs=29.6

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhc--cCCCccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK--KTPKCYI  266 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~--~~~~CP~  266 (403)
                      ..+.|||.+..|.+||.. .|||+|....|.+++.  ....||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            778999999999999875 8999999999999994  3456998

>KOG4172|consensus

Probab=97.52  E-value=1.6e-05  Score=59.65  Aligned_cols=47  Identities=30%  Similarity=0.590  Sum_probs=40.1

Q ss_pred             ccccccccccCCcccccCCc-ccHHhHHHHhc-cCCCccccCccccccc
Q psy16818        229 KCYICRNSFKDPVMTKCKHY-FCTKCALEHFK-KTPKCYICQKNTFGEF  275 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~-~~~~CP~Cr~~~~~~~  275 (403)
                      .|.||.+...+.|+..|||. .|..|.++.++ ....||+||+++..++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI   57 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI   57 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence            49999999999899999998 69999888877 5667999999876544

>KOG4265|consensus

Probab=97.36  E-value=8.7e-05  Score=74.73  Aligned_cols=49  Identities=29%  Similarity=0.596  Sum_probs=43.0

Q ss_pred             CccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      ....|.||+...++-+++||.|. .|..|+....-....||+||.++...
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            46689999999999999999999 69999988776778999999987543

>KOG2879|consensus

Probab=97.18  E-value=0.00023  Score=69.53  Aligned_cols=47  Identities=23%  Similarity=0.527  Sum_probs=39.2

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhc--cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK--KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~~  272 (403)
                      ....|++|.+....|.+. +|||.||..||.....  -+..||.|+.+..
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            346799999999999766 6999999999988765  3478999998764

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.17  E-value=0.00037  Score=68.81  Aligned_cols=44  Identities=30%  Similarity=0.766  Sum_probs=39.1

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhc-cCCCccccCc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFK-KTPKCYICQK  269 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~-~~~~CP~Cr~  269 (403)
                      ++|.|+.|..++.+|+.+ -|+|.||..||...+- ..+.||.|..
T Consensus       273 i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         273 ISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            889999999999999988 5899999999987765 4578999976

>KOG0297|consensus

Probab=97.15  E-value=0.00018  Score=74.28  Aligned_cols=46  Identities=37%  Similarity=0.882  Sum_probs=42.0

Q ss_pred             CccccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        226 LPFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ..+.|++|..++.+|+. +.|||.||..|+..|......||.|+...
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~   66 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL   66 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcccccccchhhccCcCCccccccc
Confidence            34789999999999998 49999999999999999888999998777

>KOG0825|consensus

Probab=97.00  E-value=0.00014  Score=79.08  Aligned_cols=46  Identities=22%  Similarity=0.431  Sum_probs=39.8

Q ss_pred             cccccccccccCCc---ccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPV---MTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv---~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      -.|++|+..|.+-.   -.+|+|+||..|+..|.+....||+||..+..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            47999999987653   34899999999999999988999999999853

>KOG0828|consensus

Probab=96.98  E-value=0.00033  Score=73.08  Aligned_cols=46  Identities=24%  Similarity=0.585  Sum_probs=36.9

Q ss_pred             ccccccccccc-----------------CCcccccCCcccHHhHHHHhccCC-CccccCccccc
Q psy16818        228 FKCYICRNSFK-----------------DPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~-----------------~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~  273 (403)
                      .-|+||+..+.                 +-.++||.|.|+..|+.+|+..-+ .||+||.++..
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34999998762                 124679999999999999998544 89999998753

>KOG0804|consensus

Probab=96.98  E-value=0.0006  Score=70.53  Aligned_cols=100  Identities=22%  Similarity=0.469  Sum_probs=61.4

Q ss_pred             CcceeeeeeccCCCccchhhhhhcCCCCC----CccccccCC-CccccCcccccccccccccCcCCCCCCcCCCCccccc
Q psy16818        157 PANVRSTVRWDYQPDICKDYKETGFCGFG----DSCKFLHDR-TDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCY  231 (403)
Q Consensus       157 ~~~~r~~~~~dyqpdiCkdYk~tG~CgfG----DsCkflHdr-~dy~~gwqle~e~e~~~~~~~ei~~~deed~~~l~C~  231 (403)
                      |.++=.-+.|.-|-|.=..|.+---|.|.    |.|..+|.- -.+.       +.++.......    . --++| +||
T Consensus       113 pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~-------~s~d~as~~~~----~-~tELP-TCp  179 (493)
T KOG0804|consen  113 PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVT-------ESEDGASEPPT----G-LTELP-TCP  179 (493)
T ss_pred             CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEE-------ecccCCCCCCC----C-cccCC-Ccc
Confidence            44555556666677777777776667776    577777642 2211       00100000000    0 01133 799


Q ss_pred             cccccccCCc----ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        232 ICRNSFKDPV----MTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       232 IC~~~~~~Pv----~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ||++.+...+    .+.|.|+|...|+..|+.  .+||+||--.
T Consensus       180 VCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q  221 (493)
T KOG0804|consen  180 VCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ  221 (493)
T ss_pred             hhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence            9999986543    558999999999999986  5688887644

>KOG0827|consensus

Probab=96.83  E-value=0.0053  Score=62.69  Aligned_cols=44  Identities=30%  Similarity=0.650  Sum_probs=32.9

Q ss_pred             cccccccccccCC----cccccCCcccHHhHHHHhcc--C-CCccccCccc
Q psy16818        228 FKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKK--T-PKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~--~-~~CP~Cr~~~  271 (403)
                      -.|.||.+.+..-    .+-.|||+|...|+.+|+..  + ..||+|+-..
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            4699996655322    13359999999999999984  2 5799999555

>KOG4739|consensus

Probab=96.67  E-value=0.0093  Score=57.48  Aligned_cols=41  Identities=32%  Similarity=0.770  Sum_probs=29.9

Q ss_pred             cccccccccc-CCc-ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        229 KCYICRNSFK-DPV-MTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~-~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      -|..|..... +|. +|.|+|+||..|......  ..||+|++++
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~i   47 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSI   47 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCCc--ccccccccee
Confidence            4777765443 343 679999999999865332  2799999996

>KOG1002|consensus

Probab=96.58  E-value=0.00094  Score=70.28  Aligned_cols=50  Identities=24%  Similarity=0.617  Sum_probs=42.3

Q ss_pred             CCCCccccccccccccCCcccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818        223 EDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF  272 (403)
Q Consensus       223 ed~~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~  272 (403)
                      ++.....|.+|.++-.+++.+.|-|.||..|+.++..     ..-.||.|-..+.
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            3445678999999999999999999999999988765     2457999988774

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=96.51  E-value=0.0014  Score=53.02  Aligned_cols=28  Identities=18%  Similarity=0.458  Sum_probs=26.3

Q ss_pred             ccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        244 KCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       244 ~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      .|.|.|...||.+|+.....||+|++..
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence            7999999999999999888999999876

>KOG4692|consensus

Probab=96.51  E-value=0.0014  Score=66.10  Aligned_cols=46  Identities=24%  Similarity=0.670  Sum_probs=41.6

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      -.|+||.--..+.+..||+|.-|..||.+++-+.+.|..|...+..
T Consensus       423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             ccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            4799999988888999999999999999999999999999887653

>KOG1645|consensus

Probab=96.49  E-value=0.0053  Score=63.08  Aligned_cols=45  Identities=27%  Similarity=0.662  Sum_probs=36.9

Q ss_pred             ccccccccccccCC-----cccccCCcccHHhHHHHhcc--CCCccccCccc
Q psy16818        227 PFKCYICRNSFKDP-----VMTKCKHYFCTKCALEHFKK--TPKCYICQKNT  271 (403)
Q Consensus       227 ~l~C~IC~~~~~~P-----v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~  271 (403)
                      -..|+||++.|.-|     +.+.|||.|-+.||+.|+.+  ...||.|....
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            35799999999877     45689999999999999963  24699996644

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.38  E-value=0.0022  Score=47.27  Aligned_cols=40  Identities=28%  Similarity=0.804  Sum_probs=31.7

Q ss_pred             ccccccc--cccCCcccccC-----CcccHHhHHHHhcc--CCCccccC
Q psy16818        229 KCYICRN--SFKDPVMTKCK-----HYFCTKCALEHFKK--TPKCYICQ  268 (403)
Q Consensus       229 ~C~IC~~--~~~~Pv~t~Cg-----H~FC~~Ci~~~~~~--~~~CP~Cr  268 (403)
                      .|.||+.  .-.+|.+.||.     |+|...|+.+|+..  ...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3889997  33467788885     89999999999964  44899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1734|consensus

Probab=96.37  E-value=0.00096  Score=65.11  Aligned_cols=44  Identities=20%  Similarity=0.486  Sum_probs=36.2

Q ss_pred             cccccccccccCC----------cccccCCcccHHhHHHHhc--cCCCccccCccc
Q psy16818        228 FKCYICRNSFKDP----------VMTKCKHYFCTKCALEHFK--KTPKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~P----------v~t~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~  271 (403)
                      -.|.||...+...          ..+.|+|+|++.||+.|.-  +...||.|...+
T Consensus       225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            3699999877433          3679999999999999975  567899998876

>KOG4367|consensus

Probab=96.20  E-value=0.002  Score=66.53  Aligned_cols=34  Identities=26%  Similarity=0.821  Sum_probs=30.8

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK  259 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~  259 (403)
                      .++.|+||...|.+||+++|+|..|..|++..+.
T Consensus         3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             ccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            3478999999999999999999999999987664

>KOG1571|consensus

Probab=96.05  E-value=0.0021  Score=65.01  Aligned_cols=46  Identities=30%  Similarity=0.695  Sum_probs=36.8

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      .|..|.||.+.+.+.+.++|||.-|  |..-. ...+.||+||..+...
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~~  349 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRLV  349 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHHHH
Confidence            7789999999999999999999976  66433 3456699999876543

>KOG1493|consensus

Probab=96.01  E-value=0.0019  Score=51.77  Aligned_cols=43  Identities=30%  Similarity=0.745  Sum_probs=33.2

Q ss_pred             cccccccccc------------CCccc-ccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818        229 KCYICRNSFK------------DPVMT-KCKHYFCTKCALEHFKK---TPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~------------~Pv~t-~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~  271 (403)
                      .|.||+-.|.            -|+++ -|.|.|...||.+|+..   ...||+||+..
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            5888877773            14544 79999999999999873   24699999865

>KOG1785|consensus

Probab=95.97  E-value=0.0029  Score=64.78  Aligned_cols=46  Identities=28%  Similarity=0.626  Sum_probs=39.4

Q ss_pred             ccccccccccCCcccccCCcccHHhHHHHhcc--CCCccccCcccccc
Q psy16818        229 KCYICRNSFKDPVMTKCKHYFCTKCALEHFKK--TPKCYICQKNTFGE  274 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~~~~  274 (403)
                      .|.||-+.=++-.+-+|||..|..|+..|...  ...||.||..+.|.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            69999998887777799999999999999753  56899999998653

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.94  E-value=0.0063  Score=59.54  Aligned_cols=46  Identities=28%  Similarity=0.467  Sum_probs=37.8

Q ss_pred             CccccccccccccC--C-c-ccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKD--P-V-MTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~--P-v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .+|.|||+...|..  + | +.+|||+|+..++.+.- ....||+|..++.
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT  161 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence            78999999999843  2 2 44999999999999874 4567999999994

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.80  E-value=0.0055  Score=61.80  Aligned_cols=50  Identities=24%  Similarity=0.493  Sum_probs=41.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc--cCCCccccCccccccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK--KTPKCYICQKNTFGEF  275 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~--~~~~CP~Cr~~~~~~~  275 (403)
                      ....|.||-+-+.-..++||+|-.|.-|..+...  ..+.||+|+.....++
T Consensus        60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence            4467999999988778999999999999877643  6788999999885443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.64  E-value=0.0029  Score=49.98  Aligned_cols=45  Identities=27%  Similarity=0.539  Sum_probs=22.7

Q ss_pred             ccccccccccc-C---Cccc----ccCCcccHHhHHHHhcc---C--------CCccccCcccc
Q psy16818        228 FKCYICRNSFK-D---PVMT----KCKHYFCTKCALEHFKK---T--------PKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~-~---Pv~t----~CgH~FC~~Ci~~~~~~---~--------~~CP~Cr~~~~  272 (403)
                      +.|.||...+. .   |.+.    .|++.|+..||.+|+..   .        ..||.|+.++.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            45999998764 2   3322    79999999999999872   1        14999998874

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.62  E-value=0.0049  Score=46.53  Aligned_cols=43  Identities=19%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..|..|...-...++++|||..|..|..-+  .-..||.|..++.
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~   50 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFE   50 (55)
T ss_pred             eeEEEccccccccccccccceeeccccChh--hccCCCCCCCccc
Confidence            358888888788899999999999998654  3367999999874

>KOG4185|consensus

Probab=95.55  E-value=0.015  Score=57.31  Aligned_cols=44  Identities=30%  Similarity=0.742  Sum_probs=36.7

Q ss_pred             ccccccccccc------CCcccccCCcccHHhHHHHhccC-CCccccCccc
Q psy16818        228 FKCYICRNSFK------DPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~------~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~  271 (403)
                      +.|-||.+.|.      .|-++.|||+||..|+....... -.||.||.++
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            46999999885      47788999999999998877643 3599999997

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.55  E-value=0.0049  Score=68.78  Aligned_cols=44  Identities=27%  Similarity=0.708  Sum_probs=35.6

Q ss_pred             cccccccccc-----CC--cccccCCcccHHhHHHHhcc--CCCccccCcccc
Q psy16818        229 KCYICRNSFK-----DP--VMTKCKHYFCTKCALEHFKK--TPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~~-----~P--v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~~  272 (403)
                      .|+||..++.     -|  ....|.|-|+-.|+.+|++.  ...||.||..+.
T Consensus      1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            5999998874     23  34579999999999999984  467999997654

>KOG3039|consensus

Probab=95.13  E-value=0.014  Score=56.57  Aligned_cols=47  Identities=15%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             CccccccccccccCC----cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~P----v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||...+.+.    ++-+|||+||..|.........-||+|..++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            568999999999875    34499999999999999998889999999883

>KOG1677|consensus

Probab=95.05  E-value=0.0098  Score=59.57  Aligned_cols=34  Identities=26%  Similarity=0.859  Sum_probs=28.8

Q ss_pred             eeeeeccCCCccchhhhhhcCCCCCCccccccCC
Q psy16818        161 RSTVRWDYQPDICKDYKETGFCGFGDSCKFLHDR  194 (403)
Q Consensus       161 r~~~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr  194 (403)
                      ......-|+-.+|..|..||+|.||..|+|.|..
T Consensus       168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~  201 (332)
T KOG1677|consen  168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE  201 (332)
T ss_pred             hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence            4444556888899999999999999999999964

>KOG4275|consensus

Probab=94.95  E-value=0.0047  Score=60.99  Aligned_cols=41  Identities=34%  Similarity=0.740  Sum_probs=34.9

Q ss_pred             ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ...|.||++...+.+.|+|||. -|..|-.++    ..||+||+-+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence            4689999999999999999998 499997554    3799999854

>KOG1001|consensus

Probab=94.67  E-value=0.013  Score=64.54  Aligned_cols=43  Identities=26%  Similarity=0.747  Sum_probs=37.7

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhcc--CCCccccCccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK--TPKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~  271 (403)
                      +.|+||.+ ...+++++|+|.||..|+...+..  ...||.|+..+
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            68999999 778899999999999999998763  34699999877

>KOG0826|consensus

Probab=94.42  E-value=0.022  Score=57.23  Aligned_cols=45  Identities=16%  Similarity=0.366  Sum_probs=39.0

Q ss_pred             cccccccccccCCcccc-cCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      -.|+||+....+|.++. -|-+||..|+..+......||+=+.++.
T Consensus       301 ~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  301 EVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS  346 (357)
T ss_pred             ccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence            47999999999997764 5999999999999998899998766653

>KOG2932|consensus

Probab=94.30  E-value=0.013  Score=58.36  Aligned_cols=42  Identities=29%  Similarity=0.622  Sum_probs=32.5

Q ss_pred             cccccccccccCC-cccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        228 FKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ..|.-|...+..- -+++|+|+||..|++..  ..+.||.|-..+
T Consensus        91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence            4688888766543 47799999999998654  357899997766

>KOG3800|consensus

Probab=94.18  E-value=0.33  Score=48.25  Aligned_cols=43  Identities=23%  Similarity=0.664  Sum_probs=34.5

Q ss_pred             ccccccc-cccCCc----ccccCCcccHHhHHHHhcc-CCCccccCccc
Q psy16818        229 KCYICRN-SFKDPV----MTKCKHYFCTKCALEHFKK-TPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~-~~~~Pv----~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~  271 (403)
                      .||+|.. .+.+|-    +-+|+|..|.+|....+.. ...||.|...+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence            5999986 456772    2289999999999998874 45799998877

>KOG1814|consensus

Probab=94.18  E-value=0.034  Score=57.35  Aligned_cols=46  Identities=26%  Similarity=0.528  Sum_probs=34.4

Q ss_pred             CccccccccccccCC---cccccCCcccHHhHHHHhcc--------CCCccccCccc
Q psy16818        226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKK--------TPKCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~--------~~~CP~Cr~~~  271 (403)
                      .-+.|.||++...-.   +.+||+|+||..|+..++..        .-.||.|.-.-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~  239 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS  239 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence            346799999987643   47799999999999998862        23588765443

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.03  E-value=0.024  Score=41.55  Aligned_cols=43  Identities=30%  Similarity=0.769  Sum_probs=26.0

Q ss_pred             ccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCccccc
Q psy16818        229 KCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      .|--|-  |.+--.+.|. ||.|..|+...+..+..||+|..+++.
T Consensus         4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            344443  3344567885 999999999999999999999988754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2930|consensus

Probab=93.50  E-value=0.039  Score=46.82  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=25.3

Q ss_pred             ccCCcccHHhHHHHhccCCCccccCcc
Q psy16818        244 KCKHYFCTKCALEHFKKTPKCYICQKN  270 (403)
Q Consensus       244 ~CgH~FC~~Ci~~~~~~~~~CP~Cr~~  270 (403)
                      .|.|.|...||.+|++....||+|.+.
T Consensus        80 ~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            799999999999999999999999775

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=93.03  E-value=0.57  Score=45.53  Aligned_cols=45  Identities=24%  Similarity=0.701  Sum_probs=34.1

Q ss_pred             cccccccccc-ccCCc----ccc-cCCcccHHhHHHHhccC-CCcc--ccCccc
Q psy16818        227 PFKCYICRNS-FKDPV----MTK-CKHYFCTKCALEHFKKT-PKCY--ICQKNT  271 (403)
Q Consensus       227 ~l~C~IC~~~-~~~Pv----~t~-CgH~FC~~Ci~~~~~~~-~~CP--~Cr~~~  271 (403)
                      ...||||... +-+|-    +-| |-|..|.+|..+.+... ..||  -|++.+
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            3579999964 55772    224 99999999999999854 4699  787765

>KOG3970|consensus

Probab=92.75  E-value=0.11  Score=49.95  Aligned_cols=57  Identities=23%  Similarity=0.522  Sum_probs=41.2

Q ss_pred             cccccccccc--CCcccccCCcccHHhHHHHhccC--------CCccccCccccccccchHHHHHHH
Q psy16818        229 KCYICRNSFK--DPVMTKCKHYFCTKCALEHFKKT--------PKCYICQKNTFGEFRTAEKIVQKL  285 (403)
Q Consensus       229 ~C~IC~~~~~--~Pv~t~CgH~FC~~Ci~~~~~~~--------~~CP~Cr~~~~~~~~~~~~Li~~l  285 (403)
                      -|..|...+.  +-+.+.|-|.|.+.|+.+|-..-        ..||.|...+....|....+++.+
T Consensus        52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aL  118 (299)
T KOG3970|consen   52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEAL  118 (299)
T ss_pred             CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHH
Confidence            4999999886  45778999999999999997632        369999888754444333333333

>KOG4445|consensus

Probab=92.58  E-value=0.033  Score=55.43  Aligned_cols=44  Identities=27%  Similarity=0.737  Sum_probs=34.7

Q ss_pred             ccccccccccC-C--cccccCCcccHHhHHHHhcc-----------------------CCCccccCcccc
Q psy16818        229 KCYICRNSFKD-P--VMTKCKHYFCTKCALEHFKK-----------------------TPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~~~-P--v~t~CgH~FC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~  272 (403)
                      .|.||+--|.+ |  ++|.|.|||...|+-+++..                       ...||+||..+.
T Consensus       117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            59999988864 4  57899999999999887641                       124999999883

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=92.23  E-value=0.14  Score=37.84  Aligned_cols=42  Identities=17%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             cccccccccC--Cccc--ccCCcccHHhHHHHhc-cCCCccccCccc
Q psy16818        230 CYICRNSFKD--PVMT--KCKHYFCTKCALEHFK-KTPKCYICQKNT  271 (403)
Q Consensus       230 C~IC~~~~~~--Pv~t--~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~  271 (403)
                      |++|.+.+..  --..  +||+-+|..|...... ....||.||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            6788887722  1233  6899999999998886 467899999864

>KOG0298|consensus

Probab=91.88  E-value=0.047  Score=63.07  Aligned_cols=47  Identities=23%  Similarity=0.569  Sum_probs=40.8

Q ss_pred             CCcccccccccccc-CCcccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        225 HLPFKCYICRNSFK-DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       225 ~~~l~C~IC~~~~~-~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ..++.|.||++.+. ...+..|||.||..|...|......||+|....
T Consensus      1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence            36679999999998 456789999999999999999999999997443

>KOG1941|consensus

Probab=91.67  E-value=0.051  Score=55.78  Aligned_cols=44  Identities=27%  Similarity=0.599  Sum_probs=36.1

Q ss_pred             Ccccccccccccc-CC---cccccCCcccHHhHHHHhcc--CCCccccCc
Q psy16818        226 LPFKCYICRNSFK-DP---VMTKCKHYFCTKCALEHFKK--TPKCYICQK  269 (403)
Q Consensus       226 ~~l~C~IC~~~~~-~P---v~t~CgH~FC~~Ci~~~~~~--~~~CP~Cr~  269 (403)
                      ..+.|..|.+.+- .|   -.+||.|.|+..|+..++.+  ..+||.||+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            7789999999873 22   36799999999999998864  457999994

>KOG2114|consensus

Probab=91.51  E-value=0.073  Score=59.25  Aligned_cols=42  Identities=29%  Similarity=0.638  Sum_probs=35.4

Q ss_pred             ccccccccccCCcc-cccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      .|..|...+.-|++ ..|||.|+..|+.   .+...||.|+....+
T Consensus       842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~  884 (933)
T KOG2114|consen  842 KCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG  884 (933)
T ss_pred             eecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence            89999999999965 5999999999997   456789999875443

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=90.84  E-value=0.11  Score=30.96  Aligned_cols=18  Identities=44%  Similarity=0.837  Sum_probs=14.1

Q ss_pred             cchhhhhhcCCCCCCcccccc
Q psy16818        172 ICKDYKETGFCGFGDSCKFLH  192 (403)
Q Consensus       172 iCkdYk~tG~CgfGDsCkflH  192 (403)
                      +||.+..   |.+|++|.|.|
T Consensus         1 ~Ck~~~~---C~~~~~C~f~H   18 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSH   18 (19)
T ss_pred             CCcCcCC---CCCCCcCccCC
Confidence            4774433   99999999999

>KOG3002|consensus

Probab=90.44  E-value=0.18  Score=50.59  Aligned_cols=43  Identities=26%  Similarity=0.709  Sum_probs=35.0

Q ss_pred             cccccccccccCCccccc--CCcccHHhHHHHhccCCCccccCcccccc
Q psy16818        228 FKCYICRNSFKDPVMTKC--KHYFCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~C--gH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      +.||||...+..|+. .|  ||.-|..|-.+   ....||.|+.++..+
T Consensus        49 leCPvC~~~l~~Pi~-QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   49 LDCPVCFNPLSPPIF-QCDNGHLACSSCRTK---VSNKCPTCRLPIGNI   93 (299)
T ss_pred             ccCchhhccCcccce-ecCCCcEehhhhhhh---hcccCCccccccccH
Confidence            579999999998864 55  89999999864   346799999998744

>KOG4362|consensus

Probab=89.51  E-value=0.1  Score=57.28  Aligned_cols=46  Identities=28%  Similarity=0.728  Sum_probs=38.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc---CCCccccCccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK---TPKCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~  271 (403)
                      ..+.|+||...+..|+.+.|.|.||..|+...+..   ...||+|+...
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~   68 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI   68 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence            34679999999999999999999999998876653   34699998655

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=89.49  E-value=0.4  Score=48.67  Aligned_cols=43  Identities=16%  Similarity=0.446  Sum_probs=32.1

Q ss_pred             ccccccccccC--C--cccccCCcccHHhHHHHhcc-CCCccccCccc
Q psy16818        229 KCYICRNSFKD--P--VMTKCKHYFCTKCALEHFKK-TPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~~--P--v~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~  271 (403)
                      .|++|++.+..  .  .--+||--.|.-|+-...+. +..||.||...
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y   63 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY   63 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence            49999998742  2  23478888899998766553 46799999877

>KOG2817|consensus

Probab=89.27  E-value=0.33  Score=50.11  Aligned_cols=66  Identities=24%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             ccccccccCcCCCCCCcC-CCCcccccccccccc---CCcccccCCcccHHhHHHHhccC---CCccccCccc
Q psy16818        206 EHEDGDNKNYEIPDSDEE-DHLPFKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKT---PKCYICQKNT  271 (403)
Q Consensus       206 e~e~~~~~~~ei~~~dee-d~~~l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~  271 (403)
                      +|..-++-..+|....+= -..-|.|||=.+.-.   .|+.+.|||+.|..-+.+..+..   .+||.|-...
T Consensus       312 ~W~~~deLPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  312 EWNTKDELPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             CccccccCccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            455544444444432111 123478998665443   46899999999999998887643   5899996544

>KOG3039|consensus

Probab=89.23  E-value=0.23  Score=48.40  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             ccccccccccCCcccccCCcccHHhHHHHh
Q psy16818        229 KCYICRNSFKDPVMTKCKHYFCTKCALEHF  258 (403)
Q Consensus       229 ~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~  258 (403)
                      .|++|+.++.+||+++=||.||..||++++
T Consensus        45 cCsLtLqPc~dPvit~~GylfdrEaILe~i   74 (303)
T KOG3039|consen   45 CCSLTLQPCRDPVITPDGYLFDREAILEYI   74 (303)
T ss_pred             eeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence            689999999999999999999999999865

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=88.90  E-value=0.12  Score=42.75  Aligned_cols=27  Identities=26%  Similarity=0.669  Sum_probs=23.2

Q ss_pred             ccccccccccCCc--ccccCCcccHHhHH
Q psy16818        229 KCYICRNSFKDPV--MTKCKHYFCTKCAL  255 (403)
Q Consensus       229 ~C~IC~~~~~~Pv--~t~CgH~FC~~Ci~  255 (403)
                      .|++|...+.+++  +.||||.|+..|+.
T Consensus        80 ~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   80 KCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            5999999998764  56999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3161|consensus

Probab=88.16  E-value=0.19  Score=54.54  Aligned_cols=36  Identities=33%  Similarity=0.814  Sum_probs=30.4

Q ss_pred             ccccccccccc----CCcccccCCcccHHhHHHHhccCCCcc
Q psy16818        228 FKCYICRNSFK----DPVMTKCKHYFCTKCALEHFKKTPKCY  265 (403)
Q Consensus       228 l~C~IC~~~~~----~Pv~t~CgH~FC~~Ci~~~~~~~~~CP  265 (403)
                      +.|+||...|.    .|+.+.|||+.|..|+...+.  ..||
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp   51 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP   51 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence            57999987774    689999999999999988776  4577

>KOG1940|consensus

Probab=88.04  E-value=0.39  Score=47.67  Aligned_cols=44  Identities=34%  Similarity=0.717  Sum_probs=37.1

Q ss_pred             Ccccccccccccc----CCcccccCCcccHHhHHHHhccCCCccccCc
Q psy16818        226 LPFKCYICRNSFK----DPVMTKCKHYFCTKCALEHFKKTPKCYICQK  269 (403)
Q Consensus       226 ~~l~C~IC~~~~~----~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~  269 (403)
                      .++-||||.+.+.    .|..++|||+....|+.........||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            5556999998764    5678899999999999988777789999987

>KOG1428|consensus

Probab=87.54  E-value=0.64  Score=54.80  Aligned_cols=44  Identities=25%  Similarity=0.640  Sum_probs=33.4

Q ss_pred             ccccccccc--cCC-cccccCCcccHHhHHHHhccC----------CCccccCcccc
Q psy16818        229 KCYICRNSF--KDP-VMTKCKHYFCTKCALEHFKKT----------PKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~--~~P-v~t~CgH~FC~~Ci~~~~~~~----------~~CP~Cr~~~~  272 (403)
                      .|.||...-  ..| |.+.|+|.|...|.+..+...          -.||+|..+++
T Consensus      3488 mCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             eEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            699998643  234 688999999999988766531          26999988774

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.00  E-value=0.41  Score=35.36  Aligned_cols=44  Identities=32%  Similarity=0.609  Sum_probs=22.3

Q ss_pred             ccccccccccccCCccc-ccCCcccHHh--HHHHhcc--CCCccccCcc
Q psy16818        227 PFKCYICRNSFKDPVMT-KCKHYFCTKC--ALEHFKK--TPKCYICQKN  270 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~C--i~~~~~~--~~~CP~Cr~~  270 (403)
                      .+.|+|....+..|+.. .|.|.-|.+-  +......  .-.||+|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            47899999999999855 7999976543  2222222  2369999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=86.59  E-value=0.58  Score=42.79  Aligned_cols=32  Identities=28%  Similarity=0.722  Sum_probs=22.8

Q ss_pred             cccccccccccCCccccc-------CCccc------HHhHHHHhc
Q psy16818        228 FKCYICRNSFKDPVMTKC-------KHYFC------TKCALEHFK  259 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~C-------gH~FC------~~Ci~~~~~  259 (403)
                      ..|+||++...+.|+|-|       ..|.|      ..|+.++.+
T Consensus         3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            579999999999987743       33333      568877643

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3113|consensus

Probab=86.38  E-value=1.1  Score=43.79  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             CCccccccccccccC----CcccccCCcccHHhHHHHhccCCCccccCcccc----ccccchHHHHHHHHH
Q psy16818        225 HLPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF----GEFRTAEKIVQKLKD  287 (403)
Q Consensus       225 ~~~l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~----~~~~~~~~Li~~l~~  287 (403)
                      ..+|.|+|-.-.+..    -+...|||+|-..-+.+.  +...|++|++.+.    -++|.+.+-++.|+.
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~E~~dllk~  177 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTEEDVDLLKT  177 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCHHHHHHHHH
Confidence            378999997766543    345699999999888765  3578999999984    245666555555443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=86.05  E-value=0.52  Score=41.88  Aligned_cols=45  Identities=22%  Similarity=0.630  Sum_probs=37.8

Q ss_pred             cccccccccccCCccc----ccCCcccHHhHHHHhcc---CCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMT----KCKHYFCTKCALEHFKK---TPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t----~CgH~FC~~Ci~~~~~~---~~~CP~Cr~~~~  272 (403)
                      ..|.||.+...+...+    =||-..|..|....|+.   .+.||+|+.++.
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            5799999999888666    38988999999998884   578999998874

>KOG1100|consensus

Probab=85.96  E-value=0.26  Score=46.87  Aligned_cols=39  Identities=23%  Similarity=0.622  Sum_probs=30.9

Q ss_pred             cccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccc
Q psy16818        230 CYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       230 C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      |-+|.+.-..-+++||.|. +|..|-..    ...||+|+.+..
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            8899887776567799988 89999753    356999988653

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=85.34  E-value=0.38  Score=47.20  Aligned_cols=41  Identities=32%  Similarity=0.716  Sum_probs=28.1

Q ss_pred             cccccCCcceeeeeeccCCCccchhhhhhcCCCCC---------CccccccC
Q psy16818        151 KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFG---------DSCKFLHD  193 (403)
Q Consensus       151 ~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfG---------DsCkflHd  193 (403)
                      .||-|...+-+.++.| .-|+|||.|- .|||.+.         ..|..+|+
T Consensus        12 MG~~Rn~~~~~~~~~f-~D~~VCk~~L-~g~CPhdLF~nTK~DLG~C~kiHd   61 (254)
T PF03194_consen   12 MGSNRNGDPSKRKVHF-TDPDVCKYFL-VGFCPHDLFVNTKSDLGPCPKIHD   61 (254)
T ss_pred             cCCccCCCccccCCCC-CCcccCHHHH-hCCCcHHHHhhcccccchhhhhcC
Confidence            4677765554444555 6899998775 8999876         35766775

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG2034|consensus

Probab=84.80  E-value=0.37  Score=54.15  Aligned_cols=31  Identities=26%  Similarity=0.676  Sum_probs=26.0

Q ss_pred             cccccccccc-CC-cccccCCcccHHhHHHHhc
Q psy16818        229 KCYICRNSFK-DP-VMTKCKHYFCTKCALEHFK  259 (403)
Q Consensus       229 ~C~IC~~~~~-~P-v~t~CgH~FC~~Ci~~~~~  259 (403)
                      .|.+|...+. .| ++.+|||.|+..|+.+...
T Consensus       819 ~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  819 SCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             chHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence            6999998764 56 4669999999999998864

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=84.43  E-value=0.89  Score=32.54  Aligned_cols=38  Identities=21%  Similarity=0.564  Sum_probs=22.6

Q ss_pred             cccccccccCCccc---ccCCcccHHhHHHHhccCC--Ccccc
Q psy16818        230 CYICRNSFKDPVMT---KCKHYFCTKCALEHFKKTP--KCYIC  267 (403)
Q Consensus       230 C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~~~--~CP~C  267 (403)
                      |.+|.+++..-+.=   .|+-.+...|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67888888765533   4988899999999988544  79988

; PDB: 3NW0_A 2CT0_A.

>KOG1039|consensus

Probab=84.19  E-value=0.41  Score=48.98  Aligned_cols=25  Identities=48%  Similarity=1.059  Sum_probs=21.6

Q ss_pred             ccchhhhhhcCCCCCCccccccCCCc
Q psy16818        171 DICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      .||| |.+-|+|+||+-|+|.|++.+
T Consensus         9 tic~-~~~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICK-YYQKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhh-hcccccccccceeeeeccCch
Confidence            7896 556899999999999999873

>KOG2185|consensus

Probab=82.53  E-value=0.62  Score=48.29  Aligned_cols=23  Identities=39%  Similarity=0.943  Sum_probs=19.1

Q ss_pred             cchhhhhhcCCCCCCccccccCCC
Q psy16818        172 ICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       172 iCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      +|+ |+..|-|.||.+|+|.|+..
T Consensus       142 pC~-ffLeg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  142 PCK-FFLEGRCRFGENCRFSHGLD  164 (486)
T ss_pred             cch-HhhccccccCcccccccCcc
Confidence            785 55679999999999999743

>KOG1677|consensus

Probab=80.72  E-value=0.62  Score=46.63  Aligned_cols=27  Identities=30%  Similarity=1.110  Sum_probs=23.5

Q ss_pred             CCCccchhhhhhcCCCC-CCccccccCC
Q psy16818        168 YQPDICKDYKETGFCGF-GDSCKFLHDR  194 (403)
Q Consensus       168 yqpdiCkdYk~tG~Cgf-GDsCkflHdr  194 (403)
                      |.-.+|..|.++|.|.| |++|+|-|..
T Consensus       130 ~kt~lc~~~~~~g~c~y~ge~crfah~~  157 (332)
T KOG1677|consen  130 YKTPLCRSFRKSGTCKYRGEQCRFAHGL  157 (332)
T ss_pred             ccCCcceeeecCccccccCchhhhcCCc
Confidence            45569999999999999 9999998853

>KOG3579|consensus

Probab=80.27  E-value=0.74  Score=45.73  Aligned_cols=36  Identities=31%  Similarity=0.837  Sum_probs=30.5

Q ss_pred             CCccccccccccccCCccccc----CCcccHHhHHHHhcc
Q psy16818        225 HLPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFKK  260 (403)
Q Consensus       225 ~~~l~C~IC~~~~~~Pv~t~C----gH~FC~~Ci~~~~~~  260 (403)
                      ..+|.|.+|.+.+.+-....|    .|.||..|-++..+.
T Consensus       266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~  305 (352)
T KOG3579|consen  266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ  305 (352)
T ss_pred             CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence            477999999999988777666    599999999888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
2csy_A	81	Solution Structure Of The Ring Domain Of The Zinc F		6e-20

>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger Protein 183-Like 1 Length = 81

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 52/64 (81%)
Query: 226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKL 285
           +PF+C+ICR +F++PV+TKC+HYFC  CALEHF+ TP+CYIC + T G F  A++++ KL
Sbjct: 14  IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKL 73
Query: 286 KDAG 289
           + +G
Sbjct: 74  QKSG 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-27
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-10
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	9e-10
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-09
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-09
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-09
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-09
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	6e-09
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	7e-09
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	9e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-08
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-08
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	6e-08
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	8e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	8e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-07
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-07
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-07
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	3e-07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	7e-05
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	8e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	2e-04
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-04
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-04
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-04

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score =  102 bits (255), Expect = 4e-27
 Identities = 37/72 (51%), Positives = 55/72 (76%)

Query: 219 DSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTA 278
              EE+ +PF+C+ICR +F++PV+TKC+HYFC  CALEHF+ TP+CYIC + T G F  A
Sbjct: 7   GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPA 66

Query: 279 EKIVQKLKDAGD 290
           ++++ KL+ +G 
Sbjct: 67  KELMAKLQKSGP 78

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
            +C IC  +   PV   CKH FC  C         +C +C
Sbjct: 16  PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALC 55

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKN 270
           +KC  C      P  T+C H FC  C        +PKC  CQ++
Sbjct: 16  YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQES 59

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 214 NYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF 272
           + E     E     ++C IC  + ++ V T C H FC  C ++  +    KC +  +   
Sbjct: 8   DVEFDPPLESK---YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64

Query: 273 GEF----RTAEKIVQKLK 286
                    A++ +  L 
Sbjct: 65  ENQLFPDNFAKREILSLM 82

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF----RTAEKIV 282
            +C IC   F   ++  +C H +C+ C  +      +C  C            R  +++V
Sbjct: 23  LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELV 82

Query: 283 QKLKDA 288
           + L  A
Sbjct: 83  KSLNFA 88

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQK 269
           EE+    +C  C+   K P +  C H  C+ C LE      +C ICQ 
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGC-LE--ASGMQCPICQA 45

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
           + H        + P    +      C IC +   DPV T CKH FC  C L   K     
Sbjct: 4   KIHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY 60

Query: 264 CYICQKNTF-GEFRTAEKIVQKLKDAGDIKTMAKDSDSD---SDEKSHDSSQKTTQ 315
           C  C+   F  +  +  K    + ++  +K  A+D + +        H SS K ++
Sbjct: 61  CPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESK 116

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYIC 267
             C IC+    D   +T+C H FC  C + HF  + +C  C
Sbjct: 16  ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 56

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
             C IC +  + PV   C H FC KC  +  + +   + C
Sbjct: 21  VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
             C IC +  + PV   C H FC KC  +  + +   + C
Sbjct: 21  VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKC 60

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYIC 267
             C +C    K+PV+ +C H FC  C    ++   + + C
Sbjct: 16  ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPC 55

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 220 SDEEDHLPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
           +         C IC + + +        V T+C H FC++C  +  K    C  C+K
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFGE 274
           + C  CRN  + P   +C H +C+ C           C  C      E
Sbjct: 32  YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 219 DSDEEDHLP--FKCYICRNSFKDPVMTK-CKHYFCTKCALEHF--KKTPKCYICQKN 270
            S E+D +P    C IC++   D V+   C + +C +C            C  C +N
Sbjct: 5   SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 220 SDEEDHLPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
           +         C IC + + +        V T+C H FC++C  +  K    C  C+K 
Sbjct: 8   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 228 FKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQK 269
             C IC + + +        V T+C H FC++C  +  K    C  C+K
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 228 FKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEF--------RTA 278
             C +C   F D     +C H FC  C + + + +  C IC                +T 
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 279 EKIVQKLKDAGDIKTMAKDSDSDSDEKSHDSS 310
           + IV KL        M +  D  +   S D++
Sbjct: 76  QDIVYKLVPGLFKNEMKRRRDFYAAHPSADAA 107

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC-------ALEHFKKTPKCYICQKN-TFGEFRT 277
             C IC     +P+   C H  C  C       A+        C +C  + +F   + 
Sbjct: 13  VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 193 DRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLP------FKCYICRNSFKDPVMTKCK 246
           D          E E    + +  +    +   H+        +C IC   F + V   C 
Sbjct: 24  DFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCA 83

Query: 247 HYFCTKCALEHFKKTPKCYIC 267
           H FC+ C  E  K+  +C IC
Sbjct: 84  HSFCSYCINEWMKRKIECPIC 104

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC------ALEHFKKTPKCYICQK 269
             C IC    K+PV   C H FC  C      +  +      C +C+ 
Sbjct: 20  VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKCYICQKN-TFGEFRTA---EK 280
            +C IC    K+PV TKC H FC  C    L   K   +C +C+ + T    + +    +
Sbjct: 22  LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81

Query: 281 IVQKLK 286
           +V++L 
Sbjct: 82  LVEELL 87

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           +C IC     +  M   C H FC  C     ++ P C +C K         E +V  ++ 
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLC-KVPV------ESVVHTIES 59

Query: 288 AGDIKTM 294
             +    
Sbjct: 60  DSEFGDQ 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 207 HEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKT-PKC 264
           H    + + +  +S  E    F+C+IC    +D  +   C    C  C      +   +C
Sbjct: 5   HHHHSHMDEQSVESIAEV---FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQC 61

Query: 265 YIC----QKNTFGEFRTAEKIVQKLK 286
             C    Q       R AE++ Q+L 
Sbjct: 62  PHCRAPLQLRELVNCRWAEEVTQQLD 87

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 228 FKCYICRNSFKDPVMTKCKHYFCTKC------ALEHFKKTPKCYICQK 269
             C IC      P+   C H FC  C           K    C +C+ 
Sbjct: 20  VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 208 EDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYI 266
           E+    + E     E     ++C IC  + ++ V T C H FC  C ++  +    KC +
Sbjct: 2   EEIQGYDVEFDPPLESK---YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 58

Query: 267 CQK 269
             +
Sbjct: 59  DNE 61

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 193 DRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTK 252
           D+++ K   ++    +D             +    F+C  C+     P+ T C+H  C  
Sbjct: 18  DKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKD 77

Query: 253 CALEHFKKTP-KCYIC 267
           C    F+     C  C
Sbjct: 78  CLDRSFRAQVFSCPAC 93

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 202 QLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT 261
              Q+H     + YE+            C IC  + KD  +  C H  CT C     +  
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTF--QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE 366

Query: 262 PK-CYIC 267
            + C  C
Sbjct: 367 GQGCPFC 373

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 6/52 (11%)

Query: 217 IPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYIC 267
           IP   E      +C IC     +PV   C H  C  C     +K +  C  C
Sbjct: 10  IPSLSE-----CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFC 56

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFGE 274
           E P+  ++    F C  C+     PV T+C H  C  C    FK     C  C ++  G+
Sbjct: 67  EGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPAC-RHDLGQ 125

Query: 275 FR 276
             
Sbjct: 126 NY 127

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 228 FKCYICRNSFKD-------PVMTKCKHYFCTKCALEHFKKTPKC-----YICQKNTFGEF 275
             C IC + + +        V T+C H FC++C  +  K    C      I  K     +
Sbjct: 8   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67

Query: 276 RTAEKIVQKLKDAGDIKTMAKDSDSDSDEKSH 307
             +  +   +   G  + +       S E  H
Sbjct: 68  IGSGTVSCPICMDGYSEIVQNGRLIVSTECGH 99

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 228 FKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT----PKC--YICQKNTFGEFRTAEK 280
             C IC +  K+ + TK C H FC  C +   +      P C   +  K +       + 
Sbjct: 55  LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114

Query: 281 IVQKLKDAGDIKTMAKDSDSDSDEKSHD 308
           ++ K+  + D     ++       K ++
Sbjct: 115 LISKIYPSRDEYEAHQERVLARINKHNN 142

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 218 PDSDEEDHLP--FKCYICRNSFKDPVMTK-CKHYFCTKCALEHF--KKTPKCYICQK 269
           P   E+D +P    C IC++   D V+   C + +C +C            C  C +
Sbjct: 2   PLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 9e-06
 Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 42/237 (17%)

Query: 192 HDRTDYKYGWQLEQEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTK--CKHYF 249
           H   D++ G   E +++  D     +   ++     F C   ++  K  +++K    H  
Sbjct: 4   HHHMDFETG---EHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHII 55

Query: 250 CTKCALEHFKKTPKCYIC----QKNTFGEF-RTAEK-----IVQKLKDAGDIKTMAKDSD 299
            +K A+     T + +      Q+    +F     +     ++  +K      +M     
Sbjct: 56  MSKDAVS---GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 300 SDSDEKSHDSSQKTTQSQDIS--QKVLELNKKLNQAREQQ--------------LIDKLA 343
            +  ++ ++ +Q   +  ++S  Q  L+L + L + R  +              +   + 
Sbjct: 113 IEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 344 DSYPIRRAAQWVVYFTNKSKQLTEDTIKENLSK--QNVDKLGEKLEAYLKNIRDQLE 398
            SY ++    + +++ N     + +T+ E L K    +D        +  NI+ ++ 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 218 PDSDEEDHLPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTP---KCYICQKN 270
             + +      +C IC  SF +    P +  C H  C +C  +    +    +C  C K 
Sbjct: 6   SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65

Query: 271 T 271
           T
Sbjct: 66  T 66

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 220 SDEEDHLPFKCYICRNSFKDPVM--TKCKH-YFCTKCALEHFKKTPKCYICQK 269
           S    +    C IC+   K+  +   K  H   C  CA +  K+   C +C++
Sbjct: 1   SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQ 53

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 230 CYICRNSFKD-PVMTKCKHYFCTKCALEHFKKTPK-CYICQ 268
           C  C    K    M  CKH FC  CA+ H KK  K C  C 
Sbjct: 4   CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 15/56 (26%)

Query: 230 CYICRNSFKDP---------------VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
           C ICR    D                V  +C H F   C     K+  +C +CQ++
Sbjct: 18  CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 230 CYICRNSFKDPVM--TKCKHYF-CTKCALEHFKKTPKCYICQKN 270
           C +C    +D  +   +  H   C  CA    K    C IC+K 
Sbjct: 10  CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE 53

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLHDRTDYKYGWQ 202
           Y+ ++C+ Y E+G C +G  C+F H   + +   +
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR 44

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 165 RWDYQPDICKDYKETGFCGFGDSCKFLHDRTD 196
              Y+ ++C  +K  G C +G  C F+H+ T+
Sbjct: 45  HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 230 CYIC----RNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG 273
           C IC      S     +  C H     C  E  K+  +C +C   + G
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.48
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.31
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.27
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.25
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.24
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.24
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.24
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.21
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.2
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.2
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.19
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.18
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.18
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.17
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.16
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.16
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.16
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.14
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.13
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.13
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.12
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.1
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.1
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.1
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.09
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.08
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.08
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.07
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.06
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.03
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.03
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.01
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.0
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.98
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.98
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.97
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.96
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.92
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.91
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.9
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.84
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.83
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.83
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.82
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.79
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.78
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.74
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.71
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.66
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.64
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.62
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.57
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.56
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.42
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.4
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.38
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.27
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.88
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.87
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.6
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.41
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.11
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.65
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.54
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.42
2rhk_C	72	Cleavage and polyadenylation specificity factor su	96.15
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.01
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.0
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.72
3nw0_A	238	Non-structural maintenance of chromosomes element	95.4
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	95.24
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	94.36
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.08
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	93.43
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	93.01
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	92.6
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	92.5
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	92.06
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	91.44
2rhk_C	72	Cleavage and polyadenylation specificity factor su	90.23
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	88.79
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	88.1
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	86.4
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	84.02
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	80.47

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-14  Score=113.60  Aligned_cols=62  Identities=55%  Similarity=1.325  Sum_probs=56.9

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccccccchHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD  287 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~Li~~l~~  287 (403)
                      ..+.|+||++.|.+|++++|||+||..||..|+.....||+||..+...++++..|+..+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~~   75 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQK   75 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHSS
T ss_pred             CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHHh
Confidence            66899999999999999999999999999999998889999999999888888888777654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.31  E-value=2.5e-12  Score=103.70  Aligned_cols=64  Identities=19%  Similarity=0.498  Sum_probs=51.1

Q ss_pred             CccccccccccccCCcccc-cCCcccHHhHHHHhcc--CCCccccCccc--cccccchHHHHHHHHHHh
Q psy16818        226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKK--TPKCYICQKNT--FGEFRTAEKIVQKLKDAG  289 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~--~~~CP~Cr~~~--~~~~~~~~~Li~~l~~~~  289 (403)
                      ..+.|+||++.|.+|++++ |||+||..||..|+..  ...||+||..+  ...+.++..|...+....
T Consensus        12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~   80 (92)
T 3ztg_A           12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK   80 (92)
T ss_dssp             TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred             cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence            4589999999999999999 9999999999999974  35899999997  345566655555554443

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.27  E-value=2e-12  Score=101.24  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=43.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|++++|||+||..||..|+.. ...||+|+..+.
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            34789999999999999999999999999999986 778999999985

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.25  E-value=5.2e-12  Score=101.61  Aligned_cols=63  Identities=11%  Similarity=0.127  Sum_probs=52.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..|.|+||+++|.+||+++|||+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus        13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~   76 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW   76 (85)
T ss_dssp             TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence            34899999999999999999999999999999998889999999985 3455565555554444

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.24  E-value=4.8e-12  Score=107.88  Aligned_cols=61  Identities=21%  Similarity=0.557  Sum_probs=50.3

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc--cccchHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG--EFRTAEKIVQKLKD  287 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~--~~~~~~~Li~~l~~  287 (403)
                      .+.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+..  .+.++..|...+..
T Consensus        52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~  115 (124)
T 3fl2_A           52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ  115 (124)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred             CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence            3689999999999999999999999999999974 4489999999954  56666666555443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.24  E-value=2.4e-12  Score=112.02  Aligned_cols=46  Identities=35%  Similarity=0.839  Sum_probs=43.4

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      +.|+||++.|.+|++++|||.||..||..|+.....||+||.++..
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            6799999999999999999999999999999988999999999854

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.24  E-value=1.2e-11  Score=102.70  Aligned_cols=63  Identities=11%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..|.|+||+++|.+||+++|||+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus        28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~   91 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW   91 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred             HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence            34899999999999999999999999999999998889999999985 4556666555555443

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=101.27  Aligned_cols=62  Identities=18%  Similarity=0.515  Sum_probs=50.3

Q ss_pred             ccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      .+.|+||++.|.+|+++ +|||+||..||..|+.....||+||..+. ..+.++..|...+...
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~   85 (99)
T 2y43_A           22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL   85 (99)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence            46899999999999887 89999999999999998889999999986 3455554444444433

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.20  E-value=1e-11  Score=102.46  Aligned_cols=46  Identities=22%  Similarity=0.714  Sum_probs=42.7

Q ss_pred             ccccccccccccCCcc-cccCCcccHHhHHHHhccC-CCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKT-PKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~-t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~  272 (403)
                      .+.|+||++.|.+|++ ++|||.||..||..|+... ..||+||.++.
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence            3689999999999998 9999999999999999977 68999999984

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.20  E-value=1.5e-11  Score=101.79  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=53.1

Q ss_pred             CccccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..|.|+||+++|.+||+++|| |+||..||..|+.....||+|+.++. ..+.++..|...+...
T Consensus        21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~   85 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred             HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence            348999999999999999999 99999999999998889999999985 4556666665555544

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=9.6e-12  Score=95.93  Aligned_cols=47  Identities=28%  Similarity=0.585  Sum_probs=43.5

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+|++++|||.||..||..|+.....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            44689999999999999999999999999999998889999999874

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=96.22  Aligned_cols=46  Identities=24%  Similarity=0.714  Sum_probs=41.9

Q ss_pred             CccccccccccccCCcccc-cCCcccHHhHHHHhccC--CCccccCccc
Q psy16818        226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT--PKCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~  271 (403)
                      ..+.|+||++.|.+|++++ |||.||..||..|+...  ..||+||..+
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A           14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            4578999999999999999 99999999999999854  6899999975

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.18  E-value=1.5e-11  Score=102.33  Aligned_cols=48  Identities=25%  Similarity=0.673  Sum_probs=44.0

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      ..+.|+||++.|.+|+++ +|||+||..||..|+.....||+|+..+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            347899999999999987 999999999999999988999999999864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=93.84  Aligned_cols=47  Identities=32%  Similarity=0.757  Sum_probs=42.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+|++++|||.||..||..|+. ....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            4578999999999999999999999999999995 5678999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.9e-11  Score=94.54  Aligned_cols=47  Identities=28%  Similarity=0.681  Sum_probs=43.3

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|+++ +|||.||..||..|+.....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (72)
T 2djb_A           14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH   61 (72)
T ss_dssp             GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence            457899999999999986 99999999999999988889999999884

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.8e-11  Score=93.21  Aligned_cols=47  Identities=30%  Similarity=0.635  Sum_probs=42.2

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+|++++|||.||..||..|+.   ....||+||..+.
T Consensus        19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            4478999999999999999999999999999996   4568999999874

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.16  E-value=2.2e-11  Score=107.91  Aligned_cols=61  Identities=26%  Similarity=0.512  Sum_probs=50.5

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccc--cccchHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFG--EFRTAEKIVQKLKD  287 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~--~~~~~~~Li~~l~~  287 (403)
                      .+.|+||++.|.+|++++|||+||..||..|+... ..||+||..+..  .+.++..|...+..
T Consensus        78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~  141 (150)
T 1z6u_A           78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL  141 (150)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred             CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence            36899999999999999999999999999999864 489999999964  46666655555543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.14  E-value=1.4e-11  Score=103.50  Aligned_cols=46  Identities=26%  Similarity=0.670  Sum_probs=42.3

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      .+.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+.
T Consensus        15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            4789999999999999999999999999999975 568999999985

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-11  Score=96.67  Aligned_cols=47  Identities=23%  Similarity=0.583  Sum_probs=42.6

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc-------CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-------TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-------~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|++++|||.||..|+..|+..       ...||+||..+.
T Consensus        11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A           11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            34789999999999999999999999999999976       568999999985

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=5.7e-11  Score=89.21  Aligned_cols=42  Identities=33%  Similarity=0.716  Sum_probs=38.1

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYIC  267 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~C  267 (403)
                      ..+.|+||++.|.+|++++|||.||..||..|+.   ....||+|
T Consensus        19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4478999999999999999999999999999997   45689998

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.12  E-value=4.9e-11  Score=91.06  Aligned_cols=51  Identities=25%  Similarity=0.500  Sum_probs=43.5

Q ss_pred             Ccccccccccccc---CCcccccCCcccHHhHHHHhccCCCccccCcccccccc
Q psy16818        226 LPFKCYICRNSFK---DPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFR  276 (403)
Q Consensus       226 ~~l~C~IC~~~~~---~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~~~  276 (403)
                      ....|+||++.|.   .+++++|||.||..||..|+.....||+||..+...++
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            4467999999885   34678999999999999999988899999999876554

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.12  E-value=3e-11  Score=94.97  Aligned_cols=47  Identities=28%  Similarity=0.709  Sum_probs=42.9

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc------CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|++++|||.||..|+..|+..      ...||+|+..+.
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            34789999999999999999999999999999986      668999999885

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3e-11  Score=98.77  Aligned_cols=63  Identities=19%  Similarity=0.445  Sum_probs=50.3

Q ss_pred             CccccccccccccCCcccc-cCCcccHHhHHHHhccC------CCccc--cCcc-c-cccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTK-CKHYFCTKCALEHFKKT------PKCYI--CQKN-T-FGEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~-CgH~FC~~Ci~~~~~~~------~~CP~--Cr~~-~-~~~~~~~~~Li~~l~~~  288 (403)
                      ..|.|+||+++|.+||+++ |||+||..||..|+...      ..||+  |+.. + ...+.++..|...+...
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~   79 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH   79 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred             cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence            4489999999999999995 99999999999999753      58999  9865 4 34566666666655554

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.10  E-value=6e-11  Score=100.27  Aligned_cols=59  Identities=20%  Similarity=0.665  Sum_probs=47.6

Q ss_pred             ccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKD  287 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~  287 (403)
                      .+.|+||++.|.+|+++ +|||+||..||..|+.  ..||+||..+. ..+.++..|...+..
T Consensus        22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~   82 (117)
T 1jm7_B           22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQL   82 (117)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHH
T ss_pred             CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHH
Confidence            47899999999999999 9999999999999987  78999999985 344555444444333

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=91.63  Aligned_cols=47  Identities=30%  Similarity=0.752  Sum_probs=42.3

Q ss_pred             CccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|       ++++|||.||..||..|+.....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            346799999999887       78899999999999999998889999998764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.10  E-value=2e-11  Score=93.34  Aligned_cols=46  Identities=30%  Similarity=0.800  Sum_probs=42.4

Q ss_pred             ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .+.|+||++.+.+|       ++++|||.||..||..|+.....||+||..+.
T Consensus        10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (71)
T 3ng2_A           10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   62 (71)
T ss_dssp             CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence            46799999999888       78899999999999999998899999999884

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=4.2e-11  Score=94.13  Aligned_cols=47  Identities=28%  Similarity=0.680  Sum_probs=43.0

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhcc------CCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK------TPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~------~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+|++++|||.||..|+..|+..      ...||+||..+.
T Consensus        18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            34789999999999999999999999999999876      678999999885

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.09  E-value=4.1e-11  Score=113.72  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=50.9

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..|.|+||+++|.+||+++|||+||..||..|+... ..||+|+.++. ..+.++..|...+...
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~  271 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF  271 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred             cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence            458999999999999999999999999999999864 44999999985 3455665555554433

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.08  E-value=4.9e-11  Score=106.41  Aligned_cols=63  Identities=22%  Similarity=0.595  Sum_probs=50.1

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhcc-CCCccccCcccc--ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKK-TPKCYICQKNTF--GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~Li~~l~~~  288 (403)
                      ..+.|+||++.|.+|+++ +|||.||..||..|+.. ...||+||..+.  ..+.++..|...+...
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~  119 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI  119 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence            346899999999999987 99999999999999986 678999999984  3455555554444433

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.08  E-value=7.5e-11  Score=99.19  Aligned_cols=61  Identities=31%  Similarity=0.649  Sum_probs=49.4

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCccccc--cccchHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTFG--EFRTAEKIVQKLKD  287 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~~--~~~~~~~Li~~l~~  287 (403)
                      .+.|+||++.+.+|++++|||.||..||..|+.. ...||+||..+..  .+.+...+...+..
T Consensus        23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            4689999999999999999999999999999986 6789999999853  23444555554443

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.07  E-value=4.5e-11  Score=99.33  Aligned_cols=46  Identities=35%  Similarity=0.874  Sum_probs=41.7

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhccC---CCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT---PKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~~  272 (403)
                      .+.|+||++.+.+|++++|||.||..||..|+...   ..||+||..+.
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            46799999999999999999999999999999854   47999999985

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=8.9e-11  Score=93.27  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=42.3

Q ss_pred             CccccccccccccC----CcccccCCcccHHhHHHHhccC---CCccccCcccc
Q psy16818        226 LPFKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKT---PKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+    |++++|||.||..|+..|+...   ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            34689999999998    9999999999999999999865   78999999874

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.07  E-value=3.1e-11  Score=90.17  Aligned_cols=46  Identities=30%  Similarity=0.782  Sum_probs=42.0

Q ss_pred             ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .+.|+||++.+.+|       ++++|||.||..|+..|+.....||+||..+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   55 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   55 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence            36799999999887       78899999999999999998889999999874

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.07  E-value=5.2e-11  Score=90.56  Aligned_cols=47  Identities=23%  Similarity=0.589  Sum_probs=42.5

Q ss_pred             cccccccccccCC-cccccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818        228 FKCYICRNSFKDP-VMTKCKHYFCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       228 l~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      ..|+||++.+.+| ++++|||.||..|+..|+.....||+||..+...
T Consensus         6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            4699999999997 6889999999999999999889999999988643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.06  E-value=5.8e-11  Score=86.44  Aligned_cols=45  Identities=22%  Similarity=0.512  Sum_probs=40.5

Q ss_pred             cccccccccccC----CcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        228 FKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..|+||++.|.+    +++++|||.||..|+..|+.....||+||..+.
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            469999999965    678899999999999999998899999999865

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=9.3e-11  Score=86.15  Aligned_cols=42  Identities=29%  Similarity=0.876  Sum_probs=37.4

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc---cCCCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK---KTPKCYIC  267 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~---~~~~CP~C  267 (403)
                      ..+.|+||++.+.+|++++|||.||..||..|+.   ....||+|
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3468999999999999999999999999999954   45689998

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.04  E-value=9.3e-11  Score=91.60  Aligned_cols=47  Identities=19%  Similarity=0.603  Sum_probs=41.6

Q ss_pred             CccccccccccccCC---cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|..+   ++++|||.||..||..|+.....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            456899999999876   35699999999999999998889999999985

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=94.40  Aligned_cols=48  Identities=23%  Similarity=0.525  Sum_probs=42.3

Q ss_pred             CccccccccccccC---CcccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        226 LPFKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       226 ~~l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      ....|+||++.|..   ++.++|||.||..||..|+.....||+||..+..
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            34679999999976   6788999999999999999988899999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.03  E-value=1e-10  Score=98.97  Aligned_cols=61  Identities=20%  Similarity=0.521  Sum_probs=48.2

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCC-CccccCcccccc-ccchHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNTFGE-FRTAEKIVQKLK  286 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~~~~-~~~~~~Li~~l~  286 (403)
                      ..+.|+||++.+.+|++++|||.||..||..|+.... .||+||..+... +.++..+...+.
T Consensus        17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~   79 (118)
T 3hct_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL   79 (118)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence            3478999999999999999999999999999998654 899999998542 333444444443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.03  E-value=5.4e-11  Score=88.09  Aligned_cols=44  Identities=27%  Similarity=0.571  Sum_probs=39.1

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|++++|||+||..|+..|   ...||+||..+.
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence            45789999999999999999999999999763   467999999874

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.01  E-value=1.5e-10  Score=84.42  Aligned_cols=44  Identities=20%  Similarity=0.586  Sum_probs=39.4

Q ss_pred             cccccccccccC---Ccccc-cCCcccHHhHHHHhccCCCccccCccc
Q psy16818        228 FKCYICRNSFKD---PVMTK-CKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~---Pv~t~-CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      ..|+||++.|.+   ++.++ |||.||..|+..|+.....||+||..+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A            6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence            469999999987   66776 999999999999999889999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.00  E-value=2.3e-10  Score=104.54  Aligned_cols=63  Identities=10%  Similarity=0.024  Sum_probs=51.7

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..|.||||+++|.+||+++|||+||..||..|+... ..||+|+.++. ..+.++..|...+...
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~  169 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF  169 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence            448999999999999999999999999999999863 46999999985 3566666665555544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.5e-10  Score=87.44  Aligned_cols=49  Identities=27%  Similarity=0.550  Sum_probs=42.2

Q ss_pred             CccccccccccccCCccc---ccCCcccHHhHHHHhccCCCccccCcccccc
Q psy16818        226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      ....|+||++.|..+..+   +|+|.||..||..|+.....||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            345799999999877544   9999999999999999888999999988543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.5e-10  Score=89.91  Aligned_cols=46  Identities=26%  Similarity=0.610  Sum_probs=41.4

Q ss_pred             ccccccccccccCC---cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDP---VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~P---v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ...|+||++.|..+   +.++|+|.||..||..|+.....||+||..+.
T Consensus        23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            35799999999887   67899999999999999998899999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=1.9e-10  Score=86.97  Aligned_cols=45  Identities=22%  Similarity=0.620  Sum_probs=39.2

Q ss_pred             cccccccc-cccCCc----ccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        228 FKCYICRN-SFKDPV----MTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~-~~~~Pv----~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      +.|+||++ .+.+|+    +++|||+||..|+..|+.. ...||+||..+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            57999999 899984    6799999999999999764 467999999884

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2e-10  Score=87.82  Aligned_cols=46  Identities=28%  Similarity=0.644  Sum_probs=42.1

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.+ ++++|||.||..|+..|+.....||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            34679999999998 89999999999999999998889999999885

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.92  E-value=2.1e-10  Score=100.71  Aligned_cols=46  Identities=26%  Similarity=0.776  Sum_probs=41.6

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCC-CccccCccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTP-KCYICQKNT  271 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~-~CP~Cr~~~  271 (403)
                      ..+.|+||+++|.+|+.++|||.||..||..|+.... .||+||.++
T Consensus        30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            4478999999999999999999999999999998554 899999975

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.91  E-value=4.9e-10  Score=93.67  Aligned_cols=44  Identities=27%  Similarity=0.569  Sum_probs=38.3

Q ss_pred             ccccccccccCCc------------------ccccCCcccHHhHHHHhc-----cCCCccccCcccc
Q psy16818        229 KCYICRNSFKDPV------------------MTKCKHYFCTKCALEHFK-----KTPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~~~Pv------------------~t~CgH~FC~~Ci~~~~~-----~~~~CP~Cr~~~~  272 (403)
                      .|+||++.|..|.                  +++|+|.||..||..|+.     ....||+||..+.
T Consensus        27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            6999999997764                  679999999999999994     4668999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.90  E-value=3.3e-10  Score=95.98  Aligned_cols=46  Identities=30%  Similarity=0.800  Sum_probs=42.9

Q ss_pred             ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .+.|+||++.|.+|       ++++|||.||..||.+|+.....||+||..+.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   59 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence            46799999999998       88999999999999999998889999999985

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.84  E-value=2.7e-09  Score=84.65  Aligned_cols=47  Identities=21%  Similarity=0.433  Sum_probs=38.6

Q ss_pred             Ccccccccccccc--CCcccc--cCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFK--DPVMTK--CKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~--~Pv~t~--CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.+.  ++++++  |||.||..|+..++. ....||.||..+.
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            3478999999884  455555  999999999999985 3568999999985

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.83  E-value=6.4e-10  Score=86.83  Aligned_cols=45  Identities=27%  Similarity=0.473  Sum_probs=40.2

Q ss_pred             ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      .+.|+||++.+.+|++++|||. ||..|+..|    ..||+||..+...+
T Consensus        24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~   69 (74)
T 4ic3_A           24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ   69 (74)
T ss_dssp             HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred             CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence            3679999999999999999999 999999887    77999999986543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.8e-09  Score=103.83  Aligned_cols=63  Identities=19%  Similarity=0.392  Sum_probs=50.8

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhccC--CCccc--cCcccc-ccccchHHHHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKT--PKCYI--CQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~--~~CP~--Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      ..+.||||+.+|.+||++ .|||+||..||..|+...  ..||+  |+..+. ..+.++..|...++..
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred             eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence            678999999999999985 999999999999999753  47999  999874 4566666554444433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.82  E-value=1.6e-09  Score=96.96  Aligned_cols=48  Identities=25%  Similarity=0.679  Sum_probs=43.0

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccC-CCccccCccccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT-PKCYICQKNTFG  273 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~-~~CP~Cr~~~~~  273 (403)
                      ..+.|+||+++|.+|+.++|||+||..||..|+... ..||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            347899999999999999999999999999999753 489999999854

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=3e-09  Score=84.39  Aligned_cols=44  Identities=32%  Similarity=0.679  Sum_probs=37.1

Q ss_pred             ccccccccccC--------------Cccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        229 KCYICRNSFKD--------------PVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~~~--------------Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .|+||++.|.+              ++++ +|+|.||..||.+|+.....||+||.++.
T Consensus        17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            48888888865              3444 59999999999999998899999999864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=2.7e-09  Score=83.27  Aligned_cols=45  Identities=27%  Similarity=0.487  Sum_probs=39.1

Q ss_pred             ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      .+.|+||++.+.+|++++|||. ||..|+..    ...||+||..+...+
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence            3579999999999999999999 99999964    367999999986543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.78  E-value=1.8e-09  Score=81.86  Aligned_cols=49  Identities=24%  Similarity=0.444  Sum_probs=43.2

Q ss_pred             ccccccccccccCCccc--ccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        227 PFKCYICRNSFKDPVMT--KCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t--~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      ...|.||++.+.+++++  +|||. ||..|+..|+.....||+||.++..++
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i   58 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI   58 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence            35799999999999877  99998 999999999987789999999986543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.74  E-value=2.7e-09  Score=81.14  Aligned_cols=48  Identities=25%  Similarity=0.481  Sum_probs=42.8

Q ss_pred             cccccccccccCCccc--ccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        228 FKCYICRNSFKDPVMT--KCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t--~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      ..|.||++.+.+++++  +|||. ||..|+..|+.....||+||.++..++
T Consensus         9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i   59 (64)
T 2vje_A            9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV   59 (64)
T ss_dssp             SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred             CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence            4699999999999977  99999 899999999988889999999986543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.71  E-value=4.3e-09  Score=106.44  Aligned_cols=46  Identities=28%  Similarity=0.611  Sum_probs=42.6

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~  273 (403)
                      ..|+||++.+.+|++++|||.||..|+..|+. ....||+||..+..
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            68999999999999999999999999999998 67889999998853

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.66  E-value=5.2e-09  Score=88.50  Aligned_cols=46  Identities=30%  Similarity=0.800  Sum_probs=42.0

Q ss_pred             ccccccccccccCC-------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDP-------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~P-------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      .+.|+||++.|.+|       +.++|||.||..||..|+...+.||+||..+.
T Consensus        72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            35799999999887       78899999999999999999999999999874

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.64  E-value=1.2e-08  Score=85.59  Aligned_cols=43  Identities=28%  Similarity=0.563  Sum_probs=38.0

Q ss_pred             ccccccccccCC------------------cccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        229 KCYICRNSFKDP------------------VMTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~~P------------------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      .|+||++.|..+                  +.++|+|.||..||..|+.....||+||..+
T Consensus        39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            499999998765                  2469999999999999999889999999985

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=2.2e-08  Score=77.13  Aligned_cols=45  Identities=24%  Similarity=0.657  Sum_probs=39.2

Q ss_pred             ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      ...|.||++.+.+++++||||. ||..|+..    ...||+||..+...+
T Consensus        15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF   60 (68)
T ss_dssp             SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred             CCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence            4579999999999999999999 99999984    368999999986543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.57  E-value=1.1e-08  Score=81.07  Aligned_cols=43  Identities=21%  Similarity=0.576  Sum_probs=38.5

Q ss_pred             cccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCcccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGE  274 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~  274 (403)
                      ..|+||++.+.+|+.++|||. ||..|+..|.    .||+||..+...
T Consensus        19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~   62 (79)
T 2yho_A           19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV   62 (79)
T ss_dssp             TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEE
T ss_pred             CEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCe
Confidence            479999999999999999999 9999998763    799999999643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.56  E-value=1.6e-08  Score=76.50  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=42.3

Q ss_pred             CccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..|.|+||++++.+||++ +|||+||..||.+|+.....||+++.++.
T Consensus         2 ~~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             --CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CeEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            458899999999999999 99999999999999987778999999884

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.42  E-value=9.8e-08  Score=77.35  Aligned_cols=45  Identities=27%  Similarity=0.569  Sum_probs=37.7

Q ss_pred             CccccccccccccCCccc---ccCCcccHHhHHHHhcc--------CCCccc--cCcc
Q psy16818        226 LPFKCYICRNSFKDPVMT---KCKHYFCTKCALEHFKK--------TPKCYI--CQKN  270 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t---~CgH~FC~~Ci~~~~~~--------~~~CP~--Cr~~  270 (403)
                      ..+.|+||++.+..|.++   +|||.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            357899999999988654   79999999999999862        237999  9987

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.40  E-value=4.2e-08  Score=97.99  Aligned_cols=45  Identities=29%  Similarity=0.619  Sum_probs=40.3

Q ss_pred             ccccccccccccCCcccccCCc-ccHHhHHHHhccCCCccccCccccccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHY-FCTKCALEHFKKTPKCYICQKNTFGEF  275 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~-FC~~Ci~~~~~~~~~CP~Cr~~~~~~~  275 (403)
                      .+.|+||++.+.+|+.++|||. ||..|+..|    ..||+||.++...+
T Consensus       295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~  340 (345)
T 3t6p_A          295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTV  340 (345)
T ss_dssp             TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred             CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence            3689999999999999999999 999999877    67999999986543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.38  E-value=4e-08  Score=83.90  Aligned_cols=43  Identities=30%  Similarity=0.589  Sum_probs=0.0

Q ss_pred             ccccccccccCC-----------------c-ccccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        229 KCYICRNSFKDP-----------------V-MTKCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~~P-----------------v-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      .|+||++.|..+                 + .++|+|.||..||..|+.....||+||.++
T Consensus        50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             -------------------------------------------------------------
T ss_pred             cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            599999998763                 2 258999999999999999888999999975

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=3.5e-07  Score=72.77  Aligned_cols=45  Identities=24%  Similarity=0.613  Sum_probs=38.7

Q ss_pred             ccccccccccc--CCcccccC-----CcccHHhHHHHhccC--CCccccCcccc
Q psy16818        228 FKCYICRNSFK--DPVMTKCK-----HYFCTKCALEHFKKT--PKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~--~Pv~t~Cg-----H~FC~~Ci~~~~~~~--~~CP~Cr~~~~  272 (403)
                      ..|.||++.+.  ++++++|+     |+|+..||.+|+...  ..||+|+..+.
T Consensus        16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            46999998874  67888996     999999999999854  58999999884

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.88  E-value=5e-06  Score=68.73  Aligned_cols=44  Identities=34%  Similarity=0.575  Sum_probs=37.6

Q ss_pred             ccccccccccCC-cccccCCcccHHhHHHHhc-cCCCccccCcccc
Q psy16818        229 KCYICRNSFKDP-VMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF  272 (403)
Q Consensus       229 ~C~IC~~~~~~P-v~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~  272 (403)
                      .|++|.-++..- .++||+|.||..|+..|.+ ....||.|+.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            599999888755 4779999999999999975 5678999999984

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=1.1e-05  Score=63.33  Aligned_cols=45  Identities=20%  Similarity=0.461  Sum_probs=37.9

Q ss_pred             ccccccccccCCc-ccccCCcccHHhHHHHhccC--CCccccCccccc
Q psy16818        229 KCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKT--PKCYICQKNTFG  273 (403)
Q Consensus       229 ~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~  273 (403)
                      .|.||...+..-. ...|+|.|...||.+|++..  ..||+|+.....
T Consensus        17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            5999999997433 33899999999999999876  789999988753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.60  E-value=4.5e-05  Score=57.27  Aligned_cols=45  Identities=18%  Similarity=0.429  Sum_probs=37.5

Q ss_pred             cccccccccccCCcccccC--C---cccHHhHHHHhcc--CCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMTKCK--H---YFCTKCALEHFKK--TPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~Cg--H---~FC~~Ci~~~~~~--~~~CP~Cr~~~~  272 (403)
                      ..|.||+....+|.++||.  |   +|+..|+.+|+..  ...||+|+..+.
T Consensus         7 ~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4799999887778888865  4   8999999999873  578999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.41  E-value=4.5e-05  Score=75.96  Aligned_cols=50  Identities=28%  Similarity=0.525  Sum_probs=39.3

Q ss_pred             CccccccccccccC----Cc----ccccCCcccHHhHHHHhccC-----------CCccccCccccccc
Q psy16818        226 LPFKCYICRNSFKD----PV----MTKCKHYFCTKCALEHFKKT-----------PKCYICQKNTFGEF  275 (403)
Q Consensus       226 ~~l~C~IC~~~~~~----Pv----~t~CgH~FC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~  275 (403)
                      ....|+||+..+.+    |.    ...|||.|+..|+.+|++..           ..||.|+.++...|
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf  375 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF  375 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence            45679999998865    32    24899999999999999742           35999999886544

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.11  E-value=0.00024  Score=55.22  Aligned_cols=31  Identities=32%  Similarity=0.983  Sum_probs=27.5

Q ss_pred             cCCCccchhhhhhcCCCCCCccccccCCCcc
Q psy16818        167 DYQPDICKDYKETGFCGFGDSCKFLHDRTDY  197 (403)
Q Consensus       167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~dy  197 (403)
                      .|.-.+|+.|..+|.|.||+.|+|+|+...+
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~   39 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGEL   39 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence            4677899999999999999999999998653

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.65  E-value=0.00062  Score=52.62  Aligned_cols=25  Identities=44%  Similarity=0.987  Sum_probs=22.8

Q ss_pred             ccchhhhhhcCCCCCCccccccCCCc
Q psy16818        171 DICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      .+|+.| ++|.|.||+.|.|.|+...
T Consensus        21 ~LC~~~-~~G~C~~G~~C~FAHG~~E   45 (69)
T 2d9m_A           21 SICDRY-MNGTCPEGNSCKFAHGNAE   45 (69)
T ss_dssp             SBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred             ccCccc-CcCCCCCCCccCCcCCHHH
Confidence            799999 9999999999999998644

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.54  E-value=0.00038  Score=54.05  Aligned_cols=29  Identities=34%  Similarity=1.039  Sum_probs=0.0

Q ss_pred             cCCCccchhhhhhcCCCCCCccccccCCC
Q psy16818        167 DYQPDICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      .|...+|+.|..+|+|.||+.|+|+|+..
T Consensus        47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           47 KYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             -----------------------------
T ss_pred             cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            35557899999999999999999999753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.42  E-value=0.0012  Score=54.23  Aligned_cols=26  Identities=35%  Similarity=0.929  Sum_probs=20.2

Q ss_pred             cCCCccchhhhhhcCCCCCCccccccC
Q psy16818        167 DYQPDICKDYKETGFCGFGDSCKFLHD  193 (403)
Q Consensus       167 dyqpdiCkdYk~tG~CgfGDsCkflHd  193 (403)
                      .+...+|+.| .+|.|.+||.|+|+|+
T Consensus        10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           10 PKKRELCKFY-ITGFCARAENCPYMHG   35 (98)
T ss_dssp             SCCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred             CCCCccCccc-ccCcCCCCCCCCCCCC
Confidence            4566688877 4788888888888887

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=96.15  E-value=0.002  Score=50.04  Aligned_cols=27  Identities=37%  Similarity=0.918  Sum_probs=22.8

Q ss_pred             CCCccchhhhhhcCCCCCCccccccCCC
Q psy16818        168 YQPDICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       168 yqpdiCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      +..-||+.|.. |.|.+||+|+|+|+..
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~   40 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYD   40 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCC
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccc
Confidence            45568997776 9999999999999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.01  E-value=0.0032  Score=49.31  Aligned_cols=28  Identities=36%  Similarity=0.850  Sum_probs=23.7

Q ss_pred             CCCccchhhhhhcCCCCCCccccccCCCc
Q psy16818        168 YQPDICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       168 yqpdiCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      +..-||+.|.. |.|.+||.|.|+|+...
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCcccccc
Confidence            45568997777 99999999999998754

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.00  E-value=0.0023  Score=52.63  Aligned_cols=27  Identities=44%  Similarity=0.696  Sum_probs=24.2

Q ss_pred             CccchhhhhhcCCCCCCccccccCCCc
Q psy16818        170 PDICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       170 pdiCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      ..+|+.|..+|+|.||+.|+|+|....
T Consensus        36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            568999999999999999999998654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.72  E-value=0.0047  Score=49.92  Aligned_cols=32  Identities=22%  Similarity=0.639  Sum_probs=26.9

Q ss_pred             cccccccccc-ccCCcc--cccCCcccHHhHHHHh
Q psy16818        227 PFKCYICRNS-FKDPVM--TKCKHYFCTKCALEHF  258 (403)
Q Consensus       227 ~l~C~IC~~~-~~~Pv~--t~CgH~FC~~Ci~~~~  258 (403)
                      .+.|+||.+. +..|+.  +.|+|+||..|+..++
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            3689999975 677877  8999999999999843

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=95.40  E-value=0.011  Score=55.86  Aligned_cols=46  Identities=20%  Similarity=0.427  Sum_probs=37.0

Q ss_pred             cccccccccccCCc-ccccCCcccHHhHHHHhccC--CCccccCccccc
Q psy16818        228 FKCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKT--PKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~--~~CP~Cr~~~~~  273 (403)
                      ..|.||.+++..-+ ...|+|.|+..|+..|++..  ..||.|+.....
T Consensus       181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            46999999987543 33599999999999999754  489999988743

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=95.24  E-value=0.0067  Score=46.64  Aligned_cols=25  Identities=32%  Similarity=1.060  Sum_probs=21.8

Q ss_pred             ccchhhhhhcCCCCCCc-cccccCCCc
Q psy16818        171 DICKDYKETGFCGFGDS-CKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGDs-CkflHdr~d  196 (403)
                      .||++| ..|.|..||+ |+|+|+...
T Consensus         7 ~vC~~f-~~G~C~rg~~~C~f~H~~~~   32 (70)
T 3d2q_A            7 EVCREY-QRGNCNRGENDCRFAHPADS   32 (70)
T ss_dssp             EBCHHH-HTTCCSSCTTTCSSBCCCTT
T ss_pred             hhCHHH-hcCCCCCCCCCCCCccCccc
Confidence            489999 7899999996 999998753

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=94.36  E-value=0.016  Score=41.71  Aligned_cols=28  Identities=29%  Similarity=0.761  Sum_probs=24.6

Q ss_pred             CCCccchhhhhhcCCCCCCccccccCCC
Q psy16818        168 YQPDICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       168 yqpdiCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      ..-.||+.|..-|||.+|..|.+.||-.
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            3446999999999999999999999854

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=93.43  E-value=0.059  Score=43.52  Aligned_cols=37  Identities=30%  Similarity=0.803  Sum_probs=29.6

Q ss_pred             cccccCCcceeeeeeccCCCccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818        151 KGPIRAPANVRSTVRWDYQPDICKDYKETGFCGFGD-SCKFLHDRTD  196 (403)
Q Consensus       151 ~gp~~~~~~~r~~~~~dyqpdiCkdYk~tG~CgfGD-sCkflHdr~d  196 (403)
                      ..|+|-+..++.        .||+||.. |.|..|| .|+|+|....
T Consensus         6 ~~~~~~~~~~~~--------~VCrdFlr-G~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A            6 SGPVRDTKWLTL--------EVCRQFQR-GTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             CSCCCSCSSSEE--------CBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred             cccccCCCcchh--------hhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence            457776655554        46999998 9999999 9999998765

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=93.01  E-value=0.041  Score=43.82  Aligned_cols=27  Identities=30%  Similarity=0.864  Sum_probs=23.3

Q ss_pred             CCccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818        169 QPDICKDYKETGFCGFGD-SCKFLHDRTD  196 (403)
Q Consensus       169 qpdiCkdYk~tG~CgfGD-sCkflHdr~d  196 (403)
                      +-.||++|.. |.|..|| .|+|+|....
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~   35 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKS   35 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence            3468999998 9999998 9999999754

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=92.60  E-value=0.12  Score=57.53  Aligned_cols=65  Identities=14%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             CccccccccccccCCcccccC-CcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHHhh
Q psy16818        226 LPFKCYICRNSFKDPVMTKCK-HYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDAGD  290 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~Cg-H~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~~~  290 (403)
                      ..|.|||-.+++.+||+++.| ++|=..+|.+|+.....||+=|.++. ..+.++..|...+.....
T Consensus       890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~  956 (968)
T 3m62_A          890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK  956 (968)
T ss_dssp             GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence            348999999999999999998 68999999999988889999999985 456677777777666543

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.50  E-value=0.053  Score=42.26  Aligned_cols=24  Identities=33%  Similarity=0.714  Sum_probs=21.6

Q ss_pred             cchhhhhhcCCCCCCccccccCCCc
Q psy16818        172 ICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       172 iCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      +|+.|..+|.|. |+.|.|+|....
T Consensus        40 ~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           40 ECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             BCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CCcccCCCCccC-CCCeeccCCCcc
Confidence            799999999999 999999998643

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.06  E-value=0.028  Score=46.16  Aligned_cols=25  Identities=28%  Similarity=1.026  Sum_probs=22.3

Q ss_pred             ccchhhhhhcCCCCCC-ccccccCCCc
Q psy16818        171 DICKDYKETGFCGFGD-SCKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGD-sCkflHdr~d  196 (403)
                      .||++|.. |.|..|| .|+|+|+...
T Consensus        21 ~VCr~Flr-G~C~rgd~~C~FsH~~~~   46 (98)
T 2e5s_A           21 EVCREFQR-GNCARGETDCRFAHPADS   46 (98)
T ss_dssp             EBCSHHHH-TCCSSHHHHCSSBCCSSC
T ss_pred             hhhHHHhc-CcCCCCCCCCCCcCCchh
Confidence            48999988 9999999 6999999765

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=91.44  E-value=0.072  Score=40.77  Aligned_cols=24  Identities=33%  Similarity=0.850  Sum_probs=20.7

Q ss_pred             CccchhhhhhcCCCCCCccccccCCC
Q psy16818        170 PDICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       170 pdiCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      -.+|++|.. |.|..| .|+|+|...
T Consensus        42 ~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           42 VTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             ceeccccCc-CCCCCC-CcCeeCCHH
Confidence            358999987 999999 999999754

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=90.23  E-value=0.12  Score=39.95  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=22.1

Q ss_pred             ccchhhhhhcCCCCCCccccccCCCc
Q psy16818        171 DICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      -+|+.|...|.|.+ +.|+|+|....
T Consensus        45 ~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           45 SECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CcccccCCCCCCCC-CCeeccCCCcc
Confidence            38999998899999 99999998654

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.79  E-value=0.16  Score=41.48  Aligned_cols=24  Identities=33%  Similarity=0.826  Sum_probs=20.3

Q ss_pred             ccchhhhhhcCCCCCCccccccCCCc
Q psy16818        171 DICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       171 diCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      .+|++|.. |.|.+| .|+|+|....
T Consensus        57 ~vC~~flk-G~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           57 TVCMDYIK-GRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             EBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             ccchhhcc-CCCCCC-CcCccCChHH
Confidence            48988876 999999 9999998654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=88.10  E-value=0.15  Score=48.04  Aligned_cols=25  Identities=32%  Similarity=0.774  Sum_probs=21.0

Q ss_pred             CCccchhhhhhcCCCCCCccccccCC
Q psy16818        169 QPDICKDYKETGFCGFGDSCKFLHDR  194 (403)
Q Consensus       169 qpdiCkdYk~tG~CgfGDsCkflHdr  194 (403)
                      .|-||-.|. .|+|..|+.|.|+|..
T Consensus        69 ~~~~C~ffa-kG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           69 QLFFCLFFA-KGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             CCSBCHHHH-TTCCSCGGGCSSBBSC
T ss_pred             CCeEcCccc-cCCCCCCCCCCccCCC
Confidence            578996665 4999999999999964

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=86.40  E-value=0.8  Score=36.34  Aligned_cols=35  Identities=34%  Similarity=0.827  Sum_probs=29.5

Q ss_pred             CCccccccccccccCCccccc----CCcccHHhHHHHhc
Q psy16818        225 HLPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFK  259 (403)
Q Consensus       225 ~~~l~C~IC~~~~~~Pv~t~C----gH~FC~~Ci~~~~~  259 (403)
                      ..++.|.+|.+.+.+-....|    .|.||..|.+...+
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk   51 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   51 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence            478999999999988766655    69999999988876

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=84.02  E-value=0.26  Score=46.21  Aligned_cols=26  Identities=42%  Similarity=0.816  Sum_probs=21.6

Q ss_pred             CCccchhhhh---hcCCCCCCccccccCC
Q psy16818        169 QPDICKDYKE---TGFCGFGDSCKFLHDR  194 (403)
Q Consensus       169 qpdiCkdYk~---tG~CgfGDsCkflHdr  194 (403)
                      =|+||+.|+-   -|.|.|++.|..||.=
T Consensus       150 LPeiC~~YkG~g~~g~C~~~~~C~kLHIC  178 (229)
T 3u9g_A          150 LPEICKSYKGEGRKQTCGQPQPCERLHIC  178 (229)
T ss_dssp             SCCBCTTCCCSSSCCSCSSSSCCCSBCSC
T ss_pred             CchHHHHhCCCCCCCcCCCCCCCcceecc
Confidence            3899999943   3799999999999963

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=80.47  E-value=1.1  Score=44.90  Aligned_cols=64  Identities=23%  Similarity=0.428  Sum_probs=43.9

Q ss_pred             CCccccccccccccCCccc-ccCCcccHH--hHHHHhcc--CCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        225 HLPFKCYICRNSFKDPVMT-KCKHYFCTK--CALEHFKK--TPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       225 ~~~l~C~IC~~~~~~Pv~t-~CgH~FC~~--Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      .+.+.|||-...+..|+.. .|.|.-|.+  -++.+...  .-.||+|.+.+. ..+.....+...++..
T Consensus       247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC  316 (371)
T ss_dssp             EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred             EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence            3778999999999999854 799985544  34444433  346999999884 3455555565555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-09
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-09
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-08
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-07
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
           + H        + P    +      C IC +   DPV T CKH FC  C L   K     
Sbjct: 4   KIHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSY 60

Query: 264 CYICQK 269
           C  C+ 
Sbjct: 61  CPSCRY 66

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 222 EEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKC 264
           EE+    +C  C+   K P +  C H  C+ C      + P C
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPIC 43

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.6 bits (118), Expect = 9e-09
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 229 KCYICRNSFKDPVM-TKCKHYFCTKCALEHFKKTPKCYICQKNTFGEFRTAEKIVQKLKD 287
           +C IC     +  M   C H FC  C     ++ P C +C+        +    ++   +
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV----PVESVVHTIESDSE 62

Query: 288 AGD 290
            GD
Sbjct: 63  FGD 65

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 205 QEHEDGDNKNYEIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPK 263
           Q+H     + YE+            C IC  + KD  +  C H  CT C     + +   
Sbjct: 3   QDHIKVTQEQYELYCEMGSTF--QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60

Query: 264 CYICQKN 270
           C  C+  
Sbjct: 61  CPFCRCE 67

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKC---ALEHFKKTPKCYIC----Q 268
           E+ +         +C IC    K+PV TKC H FC  C    L   K   +C +C     
Sbjct: 10  EVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69

Query: 269 KNTFGEFRTAEKIVQKLK 286
           K +  E     ++V++L 
Sbjct: 70  KRSLQESTRFSQLVEELL 87

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 230 CYICRNSFKDP----VMTKCKHYFCTKCALEHFKKTPKCYICQKN 270
           C +C    +D      + +C H F  +C          C +C+  
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 7/57 (12%)

Query: 216 EIPDSDEEDHLPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF 272
           E P+        F+C I     KDPV+      +      +      K     + T 
Sbjct: 4   EFPEY-------FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 230 CYICRNSFKDPVMTK-CKHYFCTKCALEHFKKTPKCYICQK 269
           C I     + PV++   +  F      ++ K T    I  +
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNE 43

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 230 CYICRNSFKD----PVMTKCKHYFCTKCALEHFK-KTPKCYICQK 269
           C +C    +          C +  C  C       +   C  C+K
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLHD 193
           Y+ ++C+ +   GFC +G  C F+H+
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHN 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
           Y+ ++C+ ++E+G C +G+ C+F H
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAH 28

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 168 YQPDICKDYKETGFCGFGDSCKFLH 192
           Y+ ++C+ Y E+G C +G  C+F H
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAH 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.34
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.25
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.22
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.22
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.17
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.15
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.14
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.14
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.05
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.95
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.93
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.91
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.72
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.71
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.49
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.01
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.78
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.62
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.6
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.47
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.02
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	89.9

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.8e-13  Score=107.96  Aligned_cols=60  Identities=32%  Similarity=0.652  Sum_probs=49.6

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCcccc--ccccchHHHHHHH
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTF--GEFRTAEKIVQKL  285 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~Li~~l  285 (403)
                      ..+.|+||++.+.+|++++|||+||..||.+|+. ....||+||.++.  ...++++.++..+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            3478999999999999999999999999999997 4568999999984  3345566666554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-12  Score=106.85  Aligned_cols=60  Identities=30%  Similarity=0.762  Sum_probs=47.1

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhccC---CCccccCcccc-ccccch---HHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKT---PKCYICQKNTF-GEFRTA---EKIVQKLK  286 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~---~~CP~Cr~~~~-~~~~~~---~~Li~~l~  286 (403)
                      .+.|+||++.|.+|++++|||+||..||..|+...   ..||+||.++. ..+.++   ..+++.+.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            36799999999999999999999999999998643   47999999984 233333   34555443

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.4e-12  Score=102.37  Aligned_cols=60  Identities=20%  Similarity=0.657  Sum_probs=46.3

Q ss_pred             ccccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      .+.|+||++.|.+|+++ +|||+||..||.+|+.  ..||.||.++. ..+.++..|...+...
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             cCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhCcccHHHHHHHHHH
Confidence            36899999999999975 8999999999999985  46999999884 3455554444444333

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.2e-12  Score=99.74  Aligned_cols=61  Identities=10%  Similarity=0.056  Sum_probs=49.3

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc-ccccchHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF-GEFRTAEKIVQKLKD  287 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~Li~~l~~  287 (403)
                      .|.|+||+++|.+||+++|||+||..||..|+.. ...||.|+.++. ..+.++..|...+..
T Consensus         7 ~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~   69 (80)
T d2c2la2           7 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDA   69 (80)
T ss_dssp             TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHH
T ss_pred             cccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHH
Confidence            4899999999999999999999999999999974 557999999885 344555555444443

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.6e-12  Score=98.09  Aligned_cols=46  Identities=28%  Similarity=0.611  Sum_probs=41.8

Q ss_pred             cccccccccccCCcccccCCcccHHhHHHHhc-cCCCccccCccccc
Q psy16818        228 FKCYICRNSFKDPVMTKCKHYFCTKCALEHFK-KTPKCYICQKNTFG  273 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~-~~~~CP~Cr~~~~~  273 (403)
                      ..|+||++.+.+|++++|||.||..||..|+. ..+.||+||..+..
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            35999999999999999999999999999997 45789999999854

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=2.5e-12  Score=94.16  Aligned_cols=45  Identities=20%  Similarity=0.212  Sum_probs=41.8

Q ss_pred             cccccccccccCCccc-ccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMT-KCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      +.|+||++.+.+|+++ .|||.||..||.+|+..+..||+||.++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            4799999999999987 69999999999999998889999999884

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=7.8e-12  Score=96.94  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=42.3

Q ss_pred             ccccccccccccCCcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        227 PFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      .|.|+||+++|.+||+++|||+||..||..|+.. ...||.|+.++.
T Consensus         8 ~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~   54 (78)
T d1t1ha_           8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCC
Confidence            4899999999999999999999999999999975 457999999985

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.14  E-value=6.5e-12  Score=95.24  Aligned_cols=45  Identities=24%  Similarity=0.639  Sum_probs=40.7

Q ss_pred             ccccccccccCCc-ccccCCcccHHhHHHHhccCCCccccCccccc
Q psy16818        229 KCYICRNSFKDPV-MTKCKHYFCTKCALEHFKKTPKCYICQKNTFG  273 (403)
Q Consensus       229 ~C~IC~~~~~~Pv-~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~~  273 (403)
                      .|+||++.|.+|+ +++|||.||..||.+|+.....||+||.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4999999998875 57999999999999999999999999998754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.9e-12  Score=93.37  Aligned_cols=44  Identities=27%  Similarity=0.571  Sum_probs=39.1

Q ss_pred             CccccccccccccCCcccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        226 LPFKCYICRNSFKDPVMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      ..+.|+||++.|.+|++++|||+||..||.+|   ...||+||.++.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC---CCcCcCCCCccc
Confidence            44789999999999999999999999999754   567999999884

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8e-11  Score=95.46  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=52.1

Q ss_pred             ccccccccccccCCcccccCC-cccHHhHHHHhccCCCccccCcccc-ccccchHHHHHHHHHH
Q psy16818        227 PFKCYICRNSFKDPVMTKCKH-YFCTKCALEHFKKTPKCYICQKNTF-GEFRTAEKIVQKLKDA  288 (403)
Q Consensus       227 ~l~C~IC~~~~~~Pv~t~CgH-~FC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~Li~~l~~~  288 (403)
                      .|.|+||..+|.+||+++|+| +||..||.+|+.....||+|+.++. ..+.++..|...+...
T Consensus        22 ~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~   85 (98)
T d1wgma_          22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred             HhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHH
Confidence            489999999999999998775 8999999999998889999999985 4566676666555544

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.95  E-value=1.6e-10  Score=84.22  Aligned_cols=43  Identities=21%  Similarity=0.610  Sum_probs=37.4

Q ss_pred             ccccccccccCC---ccc-ccCCcccHHhHHHHhccCCCccccCccc
Q psy16818        229 KCYICRNSFKDP---VMT-KCKHYFCTKCALEHFKKTPKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~~P---v~t-~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~  271 (403)
                      .|+||++.|...   +.+ .|+|.||..||.+|+.....||+||.++
T Consensus         7 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            599999999753   333 6999999999999999989999999875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.3e-10  Score=87.15  Aligned_cols=45  Identities=22%  Similarity=0.552  Sum_probs=36.6

Q ss_pred             ccccccccccc-CC----cccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        228 FKCYICRNSFK-DP----VMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~-~P----v~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      ..|+||++.+. .|    ++++|||.||..||..|+.. ...||+||+++.
T Consensus         4 ~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            36999998753 22    46699999999999999864 567999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-10  Score=81.47  Aligned_cols=45  Identities=18%  Similarity=0.354  Sum_probs=37.3

Q ss_pred             cccccccccccC----CcccccCCcccHHhHHHHhcc-CCCccccCcccc
Q psy16818        228 FKCYICRNSFKD----PVMTKCKHYFCTKCALEHFKK-TPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~----Pv~t~CgH~FC~~Ci~~~~~~-~~~CP~Cr~~~~  272 (403)
                      +.|+||++.|..    +.+++|||.||..|+.+|+.. ...||+||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            359999998853    345689999999999999985 557999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.7e-09  Score=84.34  Aligned_cols=43  Identities=28%  Similarity=0.527  Sum_probs=36.2

Q ss_pred             cccccccccCC------------------cccccCCcccHHhHHHHhccCCCccccCcccc
Q psy16818        230 CYICRNSFKDP------------------VMTKCKHYFCTKCALEHFKKTPKCYICQKNTF  272 (403)
Q Consensus       230 C~IC~~~~~~P------------------v~t~CgH~FC~~Ci~~~~~~~~~CP~Cr~~~~  272 (403)
                      |+||+..+..+                  +.++|||.||..||.+|+..+..||+||.++.
T Consensus        24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            88887776542                  34689999999999999999999999999863

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.4e-09  Score=87.98  Aligned_cols=43  Identities=28%  Similarity=0.609  Sum_probs=35.6

Q ss_pred             ccccccccccCC------------------cccccCCcccHHhHHHHhccC-----CCccccCccc
Q psy16818        229 KCYICRNSFKDP------------------VMTKCKHYFCTKCALEHFKKT-----PKCYICQKNT  271 (403)
Q Consensus       229 ~C~IC~~~~~~P------------------v~t~CgH~FC~~Ci~~~~~~~-----~~CP~Cr~~~  271 (403)
                      .|+||++.|..+                  .+++|||.||..||..|+...     ..||+||..+
T Consensus        27 ~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             cccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            499999987543                  357899999999999999742     3799999876

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.49  E-value=3.7e-08  Score=72.10  Aligned_cols=45  Identities=18%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             cccccccccccCCccccc-----CCcccHHhHHHHhc--cCCCccccCcccc
Q psy16818        228 FKCYICRNSFKDPVMTKC-----KHYFCTKCALEHFK--KTPKCYICQKNTF  272 (403)
Q Consensus       228 l~C~IC~~~~~~Pv~t~C-----gH~FC~~Ci~~~~~--~~~~CP~Cr~~~~  272 (403)
                      ..|.||++.+.++.+.+|     +|+||..||.+|+.  ....||+||++++
T Consensus         7 ~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            469999999888866655     59999999999985  4568999999864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.2e-06  Score=68.87  Aligned_cols=44  Identities=18%  Similarity=0.446  Sum_probs=33.6

Q ss_pred             cccccccccccC---CcccccCCcccHHhHHHHhcc-----C---CCccccCccc
Q psy16818        228 FKCYICRNSFKD---PVMTKCKHYFCTKCALEHFKK-----T---PKCYICQKNT  271 (403)
Q Consensus       228 l~C~IC~~~~~~---Pv~t~CgH~FC~~Ci~~~~~~-----~---~~CP~Cr~~~  271 (403)
                      ..|+||++.+..   +.+++|+|.||..|+..|+..     .   -.||.|+-..
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~   60 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK   60 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCCC
Confidence            459999998853   446689999999999999862     1   2599876543

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.9e-06  Score=54.76  Aligned_cols=29  Identities=31%  Similarity=1.130  Sum_probs=26.2

Q ss_pred             cCCCccchhhhhhcCCCCCCccccccCCC
Q psy16818        167 DYQPDICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      -|.-.+|+.|.++|+|.||+.|.|.|+..
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            37778999999999999999999999864

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.4e-05  Score=53.91  Aligned_cols=33  Identities=30%  Similarity=0.888  Sum_probs=29.0

Q ss_pred             eeccCCCccchhhhhhcCCCCCCccccccCCCc
Q psy16818        164 VRWDYQPDICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       164 ~~~dyqpdiCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      ...-|...+|+.|.++|+|.||+.|.|.|+..+
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~E   35 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGE   35 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHH
Confidence            445688899999999999999999999998655

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=9.2e-06  Score=53.61  Aligned_cols=30  Identities=30%  Similarity=1.031  Sum_probs=27.0

Q ss_pred             cCCCccchhhhhhcCCCCCCccccccCCCc
Q psy16818        167 DYQPDICKDYKETGFCGFGDSCKFLHDRTD  196 (403)
Q Consensus       167 dyqpdiCkdYk~tG~CgfGDsCkflHdr~d  196 (403)
                      -|...+|+.|.++|.|.||+.|.|.|+...
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~E   32 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHE   32 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGG
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHH
Confidence            477889999999999999999999998654

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.9e-05  Score=48.60  Aligned_cols=23  Identities=39%  Similarity=1.077  Sum_probs=20.5

Q ss_pred             CccchhhhhhcCCCCCCccccccC
Q psy16818        170 PDICKDYKETGFCGFGDSCKFLHD  193 (403)
Q Consensus       170 pdiCkdYk~tG~CgfGDsCkflHd  193 (403)
                      -++||.|- +|||..|++|.|+|.
T Consensus         6 kelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhe-eeeecCCcCcccccC
Confidence            47998776 899999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.004  Score=44.09  Aligned_cols=24  Identities=50%  Similarity=0.855  Sum_probs=21.7

Q ss_pred             cchhhhhhcCCCCCCccccccCCC
Q psy16818        172 ICKDYKETGFCGFGDSCKFLHDRT  195 (403)
Q Consensus       172 iCkdYk~tG~CgfGDsCkflHdr~  195 (403)
                      -||.|...+-|.-||+|+|.|+..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            499999999999999999999753

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.17  Score=37.30  Aligned_cols=34  Identities=35%  Similarity=0.853  Sum_probs=28.9

Q ss_pred             CccccccccccccCCccccc----CCcccHHhHHHHhc
Q psy16818        226 LPFKCYICRNSFKDPVMTKC----KHYFCTKCALEHFK  259 (403)
Q Consensus       226 ~~l~C~IC~~~~~~Pv~t~C----gH~FC~~Ci~~~~~  259 (403)
                      .++.|.+|.+.+.+-....|    +|.||..|.+...+
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHH
Confidence            67899999999988766655    69999999988876