Psyllid ID: psy16872
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CXJ1 | 523 | Probable glutamate--tRNA | yes | N/A | 0.828 | 0.957 | 0.447 | 1e-126 | |
| Q5JPH6 | 523 | Probable glutamate--tRNA | yes | N/A | 0.804 | 0.931 | 0.436 | 1e-121 | |
| Q66JG3 | 516 | Probable glutamate--tRNA | yes | N/A | 0.780 | 0.914 | 0.430 | 1e-118 | |
| Q4R4F1 | 506 | Probable glutamate--tRNA | N/A | N/A | 0.760 | 0.909 | 0.441 | 1e-117 | |
| Q5ZJ66 | 502 | Probable glutamate--tRNA | yes | N/A | 0.798 | 0.962 | 0.410 | 1e-114 | |
| Q0P499 | 503 | Probable glutamate--tRNA | yes | N/A | 0.811 | 0.976 | 0.382 | 1e-113 | |
| Q3B256 | 504 | Glutamate--tRNA ligase OS | yes | N/A | 0.778 | 0.934 | 0.357 | 2e-86 | |
| B3QQC6 | 503 | Glutamate--tRNA ligase OS | yes | N/A | 0.785 | 0.944 | 0.365 | 1e-85 | |
| Q9F724 | 503 | Glutamate--tRNA ligase OS | yes | N/A | 0.770 | 0.926 | 0.362 | 2e-85 | |
| A1BDK8 | 502 | Glutamate--tRNA ligase OS | yes | N/A | 0.783 | 0.944 | 0.349 | 6e-84 |
| >sp|Q9CXJ1|SYEM_MOUSE Probable glutamate--tRNA ligase, mitochondrial OS=Mus musculus GN=Ears2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/550 (44%), Positives = 334/550 (60%), Gaps = 49/550 (8%)
Query: 48 IFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILR 107
+ + +R + + G P++++ + TG LHLGGLRTALYNY+FAK H GSFILR
Sbjct: 15 VVALGHRVGRREASLGPDPGAPVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILR 74
Query: 108 IEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHN 167
+EDTDQ+R VP A E +E L+W G+ PDES GG GPY QS+RLALY + + LL +
Sbjct: 75 LEDTDQSRLVPGAAESIEDMLEWAGIPPDESPRRGGPAGPYCQSQRLALYAQATEALLRS 134
Query: 168 GSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227
G+AY CFC RL L++K+A++S P+YDN+CRNL+Q Q+ +KL + K IRF+L
Sbjct: 135 GAAYPCFCLPQRLELLKKEALRSRQTPRYDNRCRNLSQAQVAQKLAVDPKPAIRFRLEEA 194
Query: 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQIST 287
++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDHHM+ISHVLRG EW +ST
Sbjct: 195 VPAFQDLVYGWTQHEVASVEGDPVILKSDGFPTYHLACVVDDHHMSISHVLRGSEWLVST 254
Query: 288 TKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347
+KH+L+Y+A GW PP+FAHLPLLLN +GSKLSKRQGD+ +E + FLP AL++ +TN
Sbjct: 255 SKHLLLYQALGWQPPRFAHLPLLLNRDGSKLSKRQGDIFLEHFAATGFLPEALLDIITNC 314
Query: 348 GGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNE 407
G GF ++Q R P + +FDL +
Sbjct: 315 GSGFAENQ----------------------MGRTLPEL-----------ITQFDLTRITC 341
Query: 408 NSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQ----IDDDY 463
+S +DL L EFNR +RR++S+ TQ LVEKL Q +V E S LQ +D Y
Sbjct: 342 HSALLDLEKLPEFNRLHLRRLVSSETQRP--QLVEKL-QGLVKEAFGSELQNKDVLDPAY 398
Query: 464 LNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYG-KVMLNLTLGILEHLI 522
+ +L I +LQDLV ++++W +P++ H S+ S V+ LG+LE
Sbjct: 399 MERILLLRQGHISRLQDLVSPVYSYLWTRPAV-HRSELGASSENVDVIAKRLLGLLER-- 455
Query: 523 PRLQTCDPFTRDSLATPLREFSTE-QGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKE 581
P L T+D L L++ S +G ++S+ MKLLR +LSG QGP V EMM L +
Sbjct: 456 PGLS----LTQDVLNRELKKLSEGLEGAKHSSVMKLLRMALSGQLQGPPVAEMMVSLGPK 511
Query: 582 NTIRRLRDVL 591
R++ VL
Sbjct: 512 EVRERIQKVL 521
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Mus musculus (taxid: 10090) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7 |
| >sp|Q5JPH6|SYEM_HUMAN Probable glutamate--tRNA ligase, mitochondrial OS=Homo sapiens GN=EARS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/534 (43%), Positives = 323/534 (60%), Gaps = 47/534 (8%)
Query: 63 GLRSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVE 122
G + + ++++ + TG LHLGGLRTALYNY+FAK + GSFILR+EDTDQTR VP A E
Sbjct: 30 GTDAGVAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTRVVPGAAE 89
Query: 123 KLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL 182
+E L+W G+ PDES GG GPY QS+RL LY + + LL G+AY CFCS RL L
Sbjct: 90 NIEDMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEALLKTGAAYPCFCSPQRLEL 149
Query: 183 IRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYN 242
++K+A+++ P+YDN+CRN++QEQ+ +KL ++ K IRF+L ++QDLVYG +
Sbjct: 150 LKKEALRNHQTPRYDNRCRNMSQEQVAQKLAKDPKPAIRFRLEQVVPAFQDLVYGWNRHE 209
Query: 243 VFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP 302
V EGDPVI+KSDGFPTYH A VVDDHHM ISHVLRG EW +ST KH+L+Y+A GW PP
Sbjct: 210 VASVEGDPVIMKSDGFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKHLLLYQALGWQPP 269
Query: 303 KFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQL 362
FAHLPLLLN +GSKLSKRQGD+ +E FLP++L++ +TN G GF +
Sbjct: 270 HFAHLPLLLNRDGSKLSKRQGDVFLEHFAADGFLPDSLLDIITNCGSGFAE--------- 320
Query: 363 FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR 422
N++ T+ E +F+L V +S +DL L EFNR
Sbjct: 321 ----------------NQMGRTLPEL--------ITQFNLTQVTCHSALLDLEKLPEFNR 356
Query: 423 AEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQ----IDDDYLNYVLCWASERIFKL 478
++R++S +Q R LV KL Q +V E LQ ++ Y+ +L I +L
Sbjct: 357 LHLQRLVSNESQR--RQLVGKL-QVLVEEAFGCQLQNRDVLNPVYVERILLLRQGHICRL 413
Query: 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLAT 538
QDLV ++++W +P++ + V+ LG+LE ++ T+D L
Sbjct: 414 QDLVSPVYSYLWTRPAVGRAQLDAISEKVDVIAKRVLGLLE------RSSMSLTQDMLNG 467
Query: 539 PLREFSTE-QGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
L++ S +G +YS MKLLR +LSG +QGP V EMM L + R++ V+
Sbjct: 468 ELKKLSEGLEGTKYSNVMKLLRMALSGQQQGPPVAEMMLALGPKEVRERIQKVV 521
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q66JG3|SYEM_XENTR Probable glutamate--tRNA ligase, mitochondrial OS=Xenopus tropicalis GN=ears2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/516 (43%), Positives = 324/516 (62%), Gaps = 44/516 (8%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LHLGGLRTALYNYLFAK H G+FILR+EDTD++R VP A E +E L+W G+ PD
Sbjct: 42 SPTGFLHLGGLRTALYNYLFAKKHGGAFILRLEDTDRSRLVPGAAESIEDMLEWAGIPPD 101
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
ES GG GPY QSKRL LY Q LL +G+AY+CFC+ RL L++++A+++ P+Y
Sbjct: 102 ESPRHGGPCGPYEQSKRLDLYHVAAQALLDSGAAYRCFCTPQRLELLKREAMRNRQTPRY 161
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD 256
DN+CR+LT +Q++EKL NS + IRF L + +QDLVYG ++V EGDPVI+K D
Sbjct: 162 DNRCRHLTPKQVEEKLSRNSPFVIRFFLQEGAQPFQDLVYGWTQHDVASVEGDPVILKGD 221
Query: 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316
GFPTYH ANVVDDHHM +SHVLRG EW IST KH+L+Y+A GW PP+FAHLPLLLN +GS
Sbjct: 222 GFPTYHLANVVDDHHMCVSHVLRGAEWLISTAKHLLLYQALGWQPPQFAHLPLLLNKDGS 281
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
KLSKRQGD+ ++ +S +L +AL++ +TN G GF
Sbjct: 282 KLSKRQGDIFIQHYVHSGYLSDALLDLITNCGSGF------------------------- 316
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEE 436
T N++ T+ T +++L + +S +DL L EFNR + R + GT+
Sbjct: 317 TENQMGRTV--------DTLIQQYELGKTSTHSALLDLDKLPEFNRIHLTRWIE-GTETR 367
Query: 437 IRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIE 496
++ LV +L+ + + + + L++D+ ++ +L + +L DL+ +++++WV+PS+
Sbjct: 368 VQ-LVGQLQVLLKDTYKD--LELDEKHIERILLLRKGHLCRLTDLLSPEYSYLWVRPSVT 424
Query: 497 HLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLR-EFSTEQGVEYSTFM 555
+ S + NL + +L+ + FT ++L LR + + +YS+ M
Sbjct: 425 REQLQCLTSEASKVKNLVVRLLQ------ENDSGFTLETLNGELRKQLKQVKDTKYSSAM 478
Query: 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
KLLR +LSG + GPSV EM+ L ++ +I RL++ L
Sbjct: 479 KLLRVALSGQEHGPSVAEMLLSLGRQESIVRLQNAL 514
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Xenopus tropicalis (taxid: 8364) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q4R4F1|SYEM_MACFA Probable glutamate--tRNA ligase, mitochondrial OS=Macaca fascicularis GN=EARS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/507 (44%), Positives = 312/507 (61%), Gaps = 47/507 (9%)
Query: 63 GLRSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVE 122
G + ++++ + TG LHLGGLRTALYNY+FAK + GSFILR+EDTDQTRFVP A E
Sbjct: 30 GTGPGVAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTRFVPGAAE 89
Query: 123 KLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL 182
+E L+W G+ PDES GG GPY QS+RL LY + + LL G+AY CFCS RL L
Sbjct: 90 NIENMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEALLKTGAAYPCFCSPQRLEL 149
Query: 183 IRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYN 242
++K+A+++ +P+YDN+CRN++QEQ+ +KL ++ K IRF+L +++DLVYG ++
Sbjct: 150 LKKEALRNHQMPRYDNRCRNMSQEQVAQKLAKDPKPAIRFRLEQAAPAFEDLVYGWNRHD 209
Query: 243 VFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP 302
V EGDPVI+KSDGFPTYH A VVDDHHM ISHVLRG EW IST KH+L+Y+A GW PP
Sbjct: 210 VASVEGDPVIMKSDGFPTYHLACVVDDHHMGISHVLRGSEWLISTAKHLLLYQALGWHPP 269
Query: 303 KFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQL 362
FAHLPLLLN +GSKLSKRQGD+ +E FLP++L++ +TN G GF +
Sbjct: 270 HFAHLPLLLNRDGSKLSKRQGDIFLEHFAAEGFLPDSLLDIITNCGSGFAE--------- 320
Query: 363 FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR 422
N++ T+ E +F+L V +S +DL L EFNR
Sbjct: 321 ----------------NQMGRTLPE--------LITQFNLTRVTCHSALLDLEKLPEFNR 356
Query: 423 AEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQ----IDDDYLNYVLCWASERIFKL 478
++R+++ +Q LVEKL Q +V E S LQ ++ Y+ +L I +L
Sbjct: 357 LHLQRLVNNESQR--CQLVEKL-QALVEEAFGSQLQNRDVLNPIYMERILLLRQGHICRL 413
Query: 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLAT 538
QDLV ++++W +PS+ + V+ LG+LE ++ T+D L+
Sbjct: 414 QDLVSPVYSYLWTRPSVGRAQLDAISEEVDVIAKRVLGLLE------RSGMSLTQDMLSG 467
Query: 539 PLREFSTE-QGVEYSTFMKLLRTSLSG 564
L++ S +G ++S MKLLR +LSG
Sbjct: 468 ELKKLSEGLEGTKHSNVMKLLRVALSG 494
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q5ZJ66|SYEM_CHICK Probable glutamate--tRNA ligase, mitochondrial OS=Gallus gallus GN=EARS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/524 (41%), Positives = 311/524 (59%), Gaps = 41/524 (7%)
Query: 70 LKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLK 129
L+++ + TG LHLGGLRTALYNY+FAK G+F+LR+EDTDQ R V A E +E L
Sbjct: 16 LRVRFGPSPTGFLHLGGLRTALYNYVFAKQQRGTFVLRVEDTDQGRVVAGAAESIEDMLH 75
Query: 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVK 189
W G+ PDES GG +GPY QS RL LY+ + LL G+AY+CFC+ RL L+RK+A++
Sbjct: 76 WAGIPPDESPRRGGPFGPYQQSLRLDLYRAASEALLDRGAAYRCFCTPQRLELLRKEALR 135
Query: 190 SGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGD 249
+ P+YDN+CR+LT +++ EKL + + +RF+L E +QDLVYG + V EGD
Sbjct: 136 NQQTPRYDNRCRHLTPKEVAEKLAQGLDWVVRFRLERGVEPFQDLVYGWNKHEVAEVEGD 195
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
PVI+K+DGFPTYH ANVVDDHHM ISHVLRG EW ST+KH+L+YKAFGW PP+F HLPL
Sbjct: 196 PVILKADGFPTYHLANVVDDHHMGISHVLRGTEWLTSTSKHLLLYKAFGWDPPQFGHLPL 255
Query: 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369
LLN +GSKLSKRQGD+ +E +LP AL++ +TN G GF + Q
Sbjct: 256 LLNKDGSKLSKRQGDIFLERFAQEGYLPEALLDMITNCGSGFAEKQ-------------- 301
Query: 370 EKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI-RRV 428
+ T++E ++F++ + +S +DL L EFNR + R +
Sbjct: 302 -----------MGRTLEE--------LISQFEIGRITTHSALLDLEKLPEFNRMHLTRHI 342
Query: 429 MSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAF 488
+ G ++++ ++ L + + + ++ +Y+ VL I L+DLV ++++
Sbjct: 343 ENEGLRQKLIQELQLLVEDVYGDQEVDKEVLEKEYVEQVLLLRKGHISHLKDLVSDNYSY 402
Query: 489 IWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTE-Q 547
+WV+PS+ + + + L LG++ + +T + L LR + +
Sbjct: 403 LWVRPSVSREQLQMISAEVDEIGKLVLGLMT------KPAAVWTIEELNKDLRSLQKQTR 456
Query: 548 GVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+YS+ MKLLR +LSG + GPSV EMM L R+ VL
Sbjct: 457 ETKYSSMMKLLRLALSGQQHGPSVAEMMVTLGPREVCGRISKVL 500
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q0P499|SYEM_DANRE Probable glutamate--tRNA ligase, mitochondrial OS=Danio rerio GN=ears2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/585 (38%), Positives = 325/585 (55%), Gaps = 94/585 (16%)
Query: 15 RKVHKALCHS--NVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKL 72
R V + +C S VRVRFAPSPT
Sbjct: 5 RGVSRQMCTSRPEVRVRFAPSPT------------------------------------- 27
Query: 73 KHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIG 132
G LHLGGLRTALYN+LF++ G FILR+EDTDQ R VP A E +E L+W G
Sbjct: 28 -------GFLHLGGLRTALYNFLFSRQRRGVFILRLEDTDQKRLVPGAAEHIEDMLEWAG 80
Query: 133 VVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGL 192
+ PDES GG+YGPY+QS+RL LY + +LL+ G AY CFCS+ RL L++K+A +SG
Sbjct: 81 IPPDESSRRGGDYGPYVQSERLHLYTEAASSLLNTGHAYYCFCSNQRLELLKKEAQRSGH 140
Query: 193 VPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVI 252
P+YDN+CR L +Q+++KL +RFKL TE +QDLV+G + V EGDPVI
Sbjct: 141 APRYDNRCRRLQPQQVEQKLAAGVPAVVRFKLHTGTEEFQDLVFGWTGHAVGAVEGDPVI 200
Query: 253 IKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLN 312
+K+DG+PTYH A+VVDDHHM ISHVLRG EW IS+ KH+ +Y+A WTPP +AHLPLLLN
Sbjct: 201 LKADGYPTYHLASVVDDHHMRISHVLRGCEWLISSAKHLQLYRALRWTPPTYAHLPLLLN 260
Query: 313 LNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKV 372
+GSKLSKRQGD+ +++ R+ LP L++ VT+ G GF D
Sbjct: 261 RDGSKLSKRQGDIFLQSFRDRGVLPETLLDLVTHAGSGFSD------------------- 301
Query: 373 CNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTG 432
NR+ + E +F++ + +S +DL L EF+R ++R +
Sbjct: 302 ------NRMGRRLDE--------LIRDFNISKITTHSALLDLDKLEEFSRLHLQRRIEDP 347
Query: 433 TQ-----EEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFA 487
Q EE++ +V +H + +++ ++ +Y+ VL I LQDL+ +
Sbjct: 348 QQCVWLCEELKQMV----KHTHSSEISAAAVLEPEYIERVLQLRKGHISSLQDLLSSTHS 403
Query: 488 FIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQ 547
++WV+P + SQ ++S ++ +++ + L + + L++ L++ S+
Sbjct: 404 YLWVRPRV---SQTQLQSESAHAKDIATAVMQMV---LAGGSLVSMERLSSELKQISSRT 457
Query: 548 GVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592
+S+ MK+LR LS ++GPSV EMM L ++ RL+ LE
Sbjct: 458 NSTHSSVMKVLRLLLSAQQRGPSVAEMMLSLGEQEVCVRLQKALE 502
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Danio rerio (taxid: 7955) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q3B256|SYE_PELLD Glutamate--tRNA ligase OS=Pelodictyon luteolum (strain DSM 273) GN=gltX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 189/529 (35%), Positives = 285/529 (53%), Gaps = 58/529 (10%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+GGLRTALYNYLFAK NG FI+RIEDTDQ+R V A + L + L+W G+VPD
Sbjct: 15 SPTGYLHVGGLRTALYNYLFAKKMNGDFIIRIEDTDQSRKVEGAQQNLIKTLEWAGLVPD 74
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
ES GGN+GPYLQS+RL LY + LL +G+AY CF + L R+ +K GL PKY
Sbjct: 75 ESPVHGGNFGPYLQSERLELYAGYCRQLLEDGTAYYCFATSEELEENRQLQMKQGLQPKY 134
Query: 197 DNKC------RNLTQEQIDEKLKENSKYCIRFKLTNHTESW-QDLVYGDISYNVFHNEGD 249
+ K ++ + + ++ L + Y IR K+ ++ W +D++ G I ++ + D
Sbjct: 135 NRKWLPEDMGGSMPRSESEKMLASGAPYVIRMKVPDYVSVWFEDIIRGPIEFDSATID-D 193
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
V++KSDGFPTYHFA+V+DDH M +H++RG EW S KH+L+Y+ FGW PPK+AHLPL
Sbjct: 194 QVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFGWEPPKYAHLPL 253
Query: 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369
LLN + SKLSKRQGD++VE + A+INF+ G + + +++SM+ L+
Sbjct: 254 LLNPDRSKLSKRQGDVAVEDYIQKGYSQEAIINFIALLG---WNEGEGCEQEVYSMEQLI 310
Query: 370 EKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429
++ F L+ V + + LN + I+
Sbjct: 311 DR----------------------------FSLERVGKAGSIFTIDKLNWLEKQYIKNRP 342
Query: 430 STGTQEEIRSLVEKLKQHIVNEFPNSSLQID------DDYLNYVLCWASERIFKLQDLVG 483
+ E IR L+++ E + +D DDYL V+ ER+ + V
Sbjct: 343 AEKIIETIRPLLQE-------ELSSKETMLDREVITGDDYLRQVIELMRERVGFEHEFVT 395
Query: 484 KDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF 543
F + + E E+ K + T +L +P L+ FT D++ L+ F
Sbjct: 396 FSSYFFFEPETWEE------EAVKKRWTSDTPALLSEFLPTLEGLPEFTSDAIEAALKAF 449
Query: 544 STEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592
+G++ + + LR SG+ GPS+ M+E+L +E +RR+R +E
Sbjct: 450 VEPKGLKAAVLIHPLRILASGVSFGPSLYHMLEVLGREAVLRRIRKGME 498
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Pelodictyon luteolum (strain DSM 273) (taxid: 319225) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|B3QQC6|SYE_CHLP8 Glutamate--tRNA ligase OS=Chlorobaculum parvum (strain NCIB 8327) GN=gltX PE=3 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 192/525 (36%), Positives = 286/525 (54%), Gaps = 50/525 (9%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+GGLRTALYNYLFAK NG F++RIEDTDQ+R V +A + L L+W G++ D
Sbjct: 13 SPTGYLHVGGLRTALYNYLFAKRMNGEFVIRIEDTDQSRKVEDAEKNLISTLEWAGIIAD 72
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
ES GGNYGPY+QS+RL +Y+K Q LL + +AY CF + L R+ +K GL PKY
Sbjct: 73 ESPMHGGNYGPYVQSQRLDIYKKYCQQLLDDKNAYYCFSTSEELEENRQLQLKQGLQPKY 132
Query: 197 DNKC------RNLTQEQIDEKLKENSKYCIRFKLTNHTESW-QDLVYGDISYNVFHNEGD 249
+ K ++ Q +I +KL E Y +R K+ ++ W +D++ G I ++ + D
Sbjct: 133 NRKWLPEDMGGSMPQSEIKKKLDEGVPYVVRMKVPDYVSVWFEDVIRGPIEFDSATID-D 191
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
V++KSDGFPTYHFA+V+DDH M +H++RG EW S KH+L+Y+ FGW PPKFAHLPL
Sbjct: 192 QVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFGWEPPKFAHLPL 251
Query: 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369
LLN + SKLSKRQGD++VE + A++NFV G + S+ ++FSM +L+
Sbjct: 252 LLNPDRSKLSKRQGDVAVEDYVRKGYSSEAIVNFVALLG---WNEGEGSEQEVFSMDELI 308
Query: 370 EKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429
EK F L+ V + ++ L+ + I+
Sbjct: 309 EK----------------------------FSLERVGKAGAVFNVDKLSWLEKQYIKTRP 340
Query: 430 STGTQEEIRSLVEKLKQHIVNEFPNSSLQ--IDDDYLNYVLCWASERIFKLQDLVGKDFA 487
E I+ + L + + P S++ DDYL V+ ER+ + V
Sbjct: 341 VDVIVEGIKPV---LNEALAQRSPEMSVEWITSDDYLAKVVDLMRERVNFEHEFVTFSSY 397
Query: 488 FIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQ 547
F + S E + V + + LG L L+ D FT +++ L+ F +
Sbjct: 398 FFFEPESYE---EDAVAKRWRPDMPELLGEFSKL---LEANDDFTAENIEAELKAFVAPK 451
Query: 548 GVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592
G++ + + LR +SG+ GPS+ M+E+L KE +RR+ +E
Sbjct: 452 GLKPAVIIHPLRLVVSGVSFGPSLYHMLEVLGKETVLRRIARGIE 496
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|Q9F724|SYE_CHLTE Glutamate--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=gltX PE=3 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 286/518 (55%), Gaps = 52/518 (10%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+GGLRTALYNYLFAK NG F++RIEDTDQ+R V +A +KL L+W G++ D
Sbjct: 13 SPTGYLHVGGLRTALYNYLFAKRMNGDFVIRIEDTDQSRKVEDAEKKLISTLEWAGIIAD 72
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
ES GGNYGPY+QS+RL++Y+ LL + +AY CF + L R+ +K GL PKY
Sbjct: 73 ESPMHGGNYGPYVQSQRLSIYRDYCTRLLEDKNAYYCFSTPEELEENRQLQLKQGLQPKY 132
Query: 197 DNK------CRNLTQEQIDEKLKENSKYCIRFKLTNHTESW-QDLVYGDISYNVFHNEGD 249
+ K N+ + +I +KL E + Y +R K+ ++ W +D++ G I ++ + D
Sbjct: 133 NRKWLPEDMGGNMPESEIKKKLDEGAPYVVRMKVPDYVSVWFEDMIRGPIEFDSATID-D 191
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
V++KSDGFPTYHFA+V+DDH M +H++RG EW S KH+L+Y+ FGW PPKFAHLPL
Sbjct: 192 QVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFGWEPPKFAHLPL 251
Query: 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369
LLN + SKLSKRQGD++VE + A++NFV G + S+ ++FSM++L+
Sbjct: 252 LLNPDRSKLSKRQGDVAVEDYMRKGYSSEAIVNFVALLG---WNEGEGSEQEVFSMEELI 308
Query: 370 EKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429
K F L+ V + ++ L+ + I+
Sbjct: 309 SK----------------------------FSLERVGKAGAVFNVEKLSWLEKQYIK--- 337
Query: 430 STGTQEEIRSLVEKLKQHIVNEF-PNSSLQ--IDDDYLNYVLCWASERIFKLQDLVGKDF 486
T E+I ++ + Q + EF P S++ DDYL V+ ER+ + V
Sbjct: 338 -TRPVEKIVGNIKPVLQAKLAEFSPEMSVERITSDDYLAKVVELMRERVNFEHEFVTFSS 396
Query: 487 AFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTE 546
F + S E E+ K +L+ L+ D FT +++ L+ F
Sbjct: 397 YFFFEPESYEE------EAVAKRWTPNVPPLLQEFADLLEANDDFTAENIEAQLKAFVAP 450
Query: 547 QGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTI 584
+G++ + + +R ++SG+ GPS+ M+E+L KE +
Sbjct: 451 KGLKPAVLIHPIRIAVSGVSFGPSLYHMLEVLGKEAVL 488
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
| >sp|A1BDK8|SYE_CHLPD Glutamate--tRNA ligase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gltX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 184/526 (34%), Positives = 286/526 (54%), Gaps = 52/526 (9%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+GGLRTALYNYLF K G F+LRIEDTD++R V A + L + L+W G+VPD
Sbjct: 13 SPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNLLKTLEWAGIVPD 72
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
ES +GG++GPY+QS+RL +Y+K LL AY CF + L R+ +K GL PKY
Sbjct: 73 ESPELGGDFGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENRQLQLKQGLQPKY 132
Query: 197 DNKC------RNLTQEQIDEKLKENSKYCIRFKLTNHTESW-QDLVYGDISYNVFHNEGD 249
+ K ++ +I +K+++N+ Y IR K+ ++ W +DL+ G + ++ D
Sbjct: 133 NRKWLPEEMGGSMPSSEIRKKMEQNAPYVIRMKVPDYVSVWFEDLIRGPVEFDS-STIDD 191
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
V++KSDGFPTYHFA+V+DDH M +H++RG EW S KH+L+Y+ FGW PPKFAHLPL
Sbjct: 192 QVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFGWEPPKFAHLPL 251
Query: 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369
LLN + SKLSKRQGD++VE + A++NFV G + ++ +++S++ LV
Sbjct: 252 LLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLG---WNEGEGTEQEVYSLEQLV 308
Query: 370 EKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429
E+ F L+ V + ++ LN + I+
Sbjct: 309 ER----------------------------FSLERVGKAGAIFNVDKLNWLEKQYIK--- 337
Query: 430 STGTQEEIRSLVEKLKQHIVNEFPNS---SLQIDDDYLNYVLCWASERIFKLQDLVGKDF 486
+ + + I ++++ L + + P + S+ D YL V+ ER+ + V
Sbjct: 338 -SRSADRIIAVIKPLLMAELEKRPTAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSP 396
Query: 487 AFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTE 546
F + + E E K T +L + L + D FT +++ T L+ F
Sbjct: 397 YFFFDPETYEE------EGVRKRWTAETNTLLREFVTVLASLDAFTAEAIETELKAFVAP 450
Query: 547 QGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592
+G++ + + LR SG+ GPS+ M+E+L K+ IRR+ +E
Sbjct: 451 KGLKAAALIHPLRILCSGVSFGPSLYHMLEVLGKDAVIRRISRGIE 496
|
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 91081927 | 515 | PREDICTED: similar to GA18268-PA [Tribol | 0.788 | 0.926 | 0.479 | 1e-137 | |
| 201065947 | 529 | FI07227p [Drosophila melanogaster] | 0.823 | 0.941 | 0.433 | 1e-135 | |
| 24665321 | 511 | CG4573 [Drosophila melanogaster] gi|7294 | 0.798 | 0.945 | 0.437 | 1e-135 | |
| 322789705 | 510 | hypothetical protein SINV_01736 [Solenop | 0.828 | 0.982 | 0.435 | 1e-135 | |
| 21064393 | 511 | RE18828p [Drosophila melanogaster] | 0.798 | 0.945 | 0.437 | 1e-135 | |
| 195496462 | 511 | GE22553 [Drosophila yakuba] gi|194181802 | 0.821 | 0.972 | 0.427 | 1e-134 | |
| 357622083 | 504 | hypothetical protein KGM_14500 [Danaus p | 0.809 | 0.972 | 0.469 | 1e-134 | |
| 289724794 | 496 | mitochondrial glutamyl-tRNA synthetase [ | 0.786 | 0.959 | 0.464 | 1e-134 | |
| 307188501 | 511 | Probable glutamyl-tRNA synthetase, mitoc | 0.780 | 0.923 | 0.475 | 1e-134 | |
| 195476716 | 511 | GE23000 [Drosophila yakuba] gi|194186006 | 0.821 | 0.972 | 0.427 | 1e-134 |
| >gi|91081927|ref|XP_966456.1| PREDICTED: similar to GA18268-PA [Tribolium castaneum] gi|270007328|gb|EFA03776.1| hypothetical protein TcasGA2_TC013887 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/521 (47%), Positives = 347/521 (66%), Gaps = 44/521 (8%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LHLGGLRTALYNY FAKS NG+FILRIEDTDQ+R V A+E+L+ DL W G+ D
Sbjct: 37 SPTGFLHLGGLRTALYNYFFAKSCNGAFILRIEDTDQSRLVEGAIEQLQHDLNWAGIQID 96
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
E + GG++GPY+QS+RL +Y++ V TLL+NGSAY CFC++ RL L+R++A++ +PKY
Sbjct: 97 EGPSSGGSHGPYIQSQRLHIYREHVTTLLNNGSAYHCFCTEKRLELLRREAIRIREIPKY 156
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD 256
DN+CR+L E+++EKL + + C+RFKL +++ DL+YG ++Y+V NEGDPVI+KSD
Sbjct: 157 DNRCRSLKPEEVEEKLAQGIQSCVRFKLAPGVQNYADLIYGSLNYDVAANEGDPVIVKSD 216
Query: 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316
GFPTYHFANVVDDH M +SHVLRGVEWQIST KHI++Y+AFGW PP F HLPLL+N +GS
Sbjct: 217 GFPTYHFANVVDDHLMKVSHVLRGVEWQISTPKHIMMYRAFGWEPPLFGHLPLLMNPDGS 276
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFH-DHQRTSKSQLFSMKDLVEKVCNN 375
KLSKRQGD+ + R+ P ALINF+TN GGGF D ++ K + ++M +L
Sbjct: 277 KLSKRQGDIRIGHYRDLGIFPLALINFITNSGGGFEKDSEQNVKPKCYTMDELA------ 330
Query: 376 ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQE 435
++FG+ +N +S K+ L EFNR E++R + +E
Sbjct: 331 ----------RQFGV------------SRINSHSGKLMPERLYEFNRLELKRKLEDPNEE 368
Query: 436 EIRSLVEKLKQHIVNEFP-NSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPS 494
+ LVE++ Q + F N LQ+D ++ Y+L W+ RI KLQDL+ D FIWV P
Sbjct: 369 --KKLVEEVGQMVRKSFAGNDLLQLDPQHVRYILHWSVNRITKLQDLLSDDLKFIWVSPK 426
Query: 495 IEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTF 554
+S++ + + LGI + R QT D R+ L + F E +++ F
Sbjct: 427 SYQISENDL---------VPLGIFIEQLERNQTLD---REHLNAFFKSFCKEHQLKFGNF 474
Query: 555 MKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSR 595
MK LR+ LSGLK+GPSV EM+EIL K+NTIRRL+ +++++
Sbjct: 475 MKTLRSILSGLKEGPSVAEMVEILGKDNTIRRLQHCIKHNK 515
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|201065947|gb|ACH92383.1| FI07227p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 355/588 (60%), Gaps = 90/588 (15%)
Query: 7 NLLKLTSYRKVHKAL--CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGL 64
N+LK+ + + L HS VRVRFAPSPT
Sbjct: 18 NMLKINPRMLMQQCLRHAHSQVRVRFAPSPT----------------------------- 48
Query: 65 RSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKL 124
G LHLGGLRTALYN+L+A+ G F+LRIEDTDQTR VP A E+L
Sbjct: 49 ---------------GYLHLGGLRTALYNFLYARHLGGKFLLRIEDTDQTRLVPGASERL 93
Query: 125 EQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIR 184
+DL W G+ DE GG GPY+QS+R +Y K ++ LLHNG+AY+CFC++ RL+L+R
Sbjct: 94 VEDLLWAGIEIDEGPGFGGQLGPYVQSQRTEIYSKAIEELLHNGTAYRCFCTERRLDLLR 153
Query: 185 KDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVF 244
K+A+++ VP+YDNKCR+LT ++D L + + YCIRFKLT+H E DL+YG + +NV
Sbjct: 154 KEALRTRQVPRYDNKCRHLTTSEVDSLLAKGTPYCIRFKLTDHEEPLDDLIYGKVHHNVS 213
Query: 245 HNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKF 304
NEGDPV++KSD FPTYHFANVVDDH M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF
Sbjct: 214 DNEGDPVVMKSDQFPTYHFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGWQPPKF 273
Query: 305 AHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFS 364
HLPLL+N +G+KLSKRQGD+ ++ R + P AL+N+V + GGGF +H+ +K QL S
Sbjct: 274 GHLPLLVNADGTKLSKRQGDIGIQHFRERGYFPQALVNYVVSAGGGF-EHRTNAKQQLLS 332
Query: 365 MKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAE 424
M+ L E +F ++ VN + +++ L++ NR E
Sbjct: 333 MQALHE----------------------------QFHIERVNSHPSRLNPELLDDLNRLE 364
Query: 425 IRRVMSTGTQEEIRSLVEKLKQHIVNEFP-NSSLQIDDDYLNYVLCWASERIFKLQDLVG 483
I + +S E LV +++Q + +P +S+L + ++++ VL W+S+R+ LQDL
Sbjct: 365 IVQRLS--GNESRTKLVNEVQQLVKEAYPQHSNLDLAEEHILDVLNWSSKRLTLLQDLTS 422
Query: 484 KDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF 543
+F+WVKPS + +LT L HL+ + F +D L L+ F
Sbjct: 423 SKLSFLWVKPSDFQIK------------DLTAEQLAHLLQLINAIQDFHKDELNVKLKSF 470
Query: 544 STEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+ ++ +++ MK LR +LSGLK+GP V EMMEIL K T+ RL++ L
Sbjct: 471 AQKENIKFPLMMKTLRAALSGLKEGPGVAEMMEILGKSVTLERLKEAL 518
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24665321|ref|NP_648894.2| CG4573 [Drosophila melanogaster] gi|7294109|gb|AAF49463.1| CG4573 [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/571 (43%), Positives = 345/571 (60%), Gaps = 88/571 (15%)
Query: 22 CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGL 81
HS VRVRFAPSPT G
Sbjct: 17 AHSQVRVRFAPSPT--------------------------------------------GY 32
Query: 82 LHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
LHLGGLRTALYN+L+A+ G F+LRIEDTDQTR VP A E+L +DL W G+ DE
Sbjct: 33 LHLGGLRTALYNFLYARHLGGKFLLRIEDTDQTRLVPGASERLVEDLLWAGIEIDEGPGF 92
Query: 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201
GG GPY+QS+R +Y K ++ LLHNG+AY+CFC++ RL+L+RK+A+++ VP+YDNKCR
Sbjct: 93 GGQLGPYVQSQRTEIYSKAIEELLHNGTAYRCFCTERRLDLLRKEALRTRQVPRYDNKCR 152
Query: 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTY 261
+LT ++D L + + YCIRFKLT+H E DL+YG + +NV NEGDPV++KSD FPTY
Sbjct: 153 HLTTSEVDSLLAKGTPYCIRFKLTDHEEPLDDLIYGKVHHNVSDNEGDPVVMKSDQFPTY 212
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
HFANVVDDH M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF HLPLL+N +G+KLSKR
Sbjct: 213 HFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGWQPPKFGHLPLLVNADGTKLSKR 272
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
QGD+ ++ R + P AL+N+V + GGGF +H+ +K QL SM
Sbjct: 273 QGDIGIQHFRERGYFPQALVNYVVSAGGGF-EHRTNAKQQLLSM---------------- 315
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
Q +F ++ VN + +++ L++ NR EI + +S E LV
Sbjct: 316 ------------QALHEQFHIERVNSHPSRLNPELLDDLNRLEIVQRLSGN--ESRTKLV 361
Query: 442 EKLKQHIVNEFP-NSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+++Q + +P +S+L + ++++ VL W+S+R+ LQDL +F+WVKPS +
Sbjct: 362 NEVQQLVKEAYPQHSNLDLAEEHILDVLNWSSKRLTLLQDLTSSKLSFLWVKPSDFQIK- 420
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+LT L HL+ + F +D L L+ F+ ++ +++ MK LR
Sbjct: 421 -----------DLTAEQLAHLLQLINAIQDFHKDELNVKLKSFAQKENIKFPLMMKTLRA 469
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+LSGLK+GP V EMMEIL K T+ RL++ L
Sbjct: 470 ALSGLKEGPGVAEMMEILGKSVTLERLKEAL 500
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322789705|gb|EFZ14871.1| hypothetical protein SINV_01736 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/590 (43%), Positives = 361/590 (61%), Gaps = 89/590 (15%)
Query: 4 VRENLLKLTSYRKVHKALCHSN-VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITE 62
++ ++L+ TS++ + K + VRVRFAPSPT
Sbjct: 1 MQRSILRATSFQLLQKRFFKKHHVRVRFAPSPT--------------------------- 33
Query: 63 GLRSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVE 122
G +HLGGLRTA+YNYLFA+S+NG+FILRIEDTDQTR VP A+E
Sbjct: 34 -----------------GHMHLGGLRTAMYNYLFARSNNGTFILRIEDTDQTRTVPGAIE 76
Query: 123 KLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL 182
KL+ DL W G++PDE GG GPYLQS RL LY+++V LL+NGSAY CFC++ RL L
Sbjct: 77 KLQDDLLWAGIIPDEDPIRGGPVGPYLQSSRLELYKEQVLKLLNNGSAYYCFCTEKRLEL 136
Query: 183 IRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYN 242
+RK+A+K VPKYDN+CR+ T+E++ E L++NS YCIRFKL + +E++ D+VYG++ ++
Sbjct: 137 LRKEAMKCRQVPKYDNRCRHFTKEEVKEMLRKNSTYCIRFKLPSISEAFHDIVYGEVLHD 196
Query: 243 VFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP 302
V +EGDPVIIKSDG+PTYHFANVVDDH M ISHVLRGVEWQIST KHI++YKAFGW PP
Sbjct: 197 VTKSEGDPVIIKSDGYPTYHFANVVDDHFMEISHVLRGVEWQISTPKHIMLYKAFGWDPP 256
Query: 303 KFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQL 362
+ HLPL+LN +GSKLSKRQ D+ +E+ R P AL+N+V GGGFH Q L
Sbjct: 257 VYGHLPLILNADGSKLSKRQNDIKIESFRKQGIFPLALLNYVIGAGGGFHRDQEN--QDL 314
Query: 363 FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR 422
+S +L++ +FD+ + +S K+ L EFN+
Sbjct: 315 YSYPELIK----------------------------QFDINKIKSSSGKLMHEKLMEFNK 346
Query: 423 AEIRRVMSTGTQEEIRSLVEKLKQHIVNEFP----NSSLQIDDDYLNYVLCWASERIFKL 478
E+ ++ +E + +E++K+ ++ F + +LQ+DDD++ L WA RI+ L
Sbjct: 347 LEMANLLQ--NEENHKFFIERIKKLVLETFSEWKNDGNLQLDDDHIITTLKWAQNRIWTL 404
Query: 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLAT 538
DLV +D AF+W+ PS + S +LN L ++ + D +A+
Sbjct: 405 NDLVKQDLAFLWIAPSSTANVKQAECSDAIKLLNAELIEID--------ASNYKTDWMAS 456
Query: 539 PLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
L++F+ + GV ++ MK LR+ +SG+K GP V EMMEIL K+ T+ RL+
Sbjct: 457 YLKDFAKKNGVPFTALMKTLRSVISGVKVGPPVAEMMEILGKDRTLLRLQ 506
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|21064393|gb|AAM29426.1| RE18828p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/571 (43%), Positives = 345/571 (60%), Gaps = 88/571 (15%)
Query: 22 CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGL 81
HS VRVRFAPSPT G
Sbjct: 17 AHSQVRVRFAPSPT--------------------------------------------GY 32
Query: 82 LHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETV 141
LHLGGLRTALYN+L+A+ G F+LRIEDTDQTR VP A E+L +DL W G+ DE
Sbjct: 33 LHLGGLRTALYNFLYARHLGGKFLLRIEDTDQTRLVPGASERLVEDLLWAGIEIDEGPGF 92
Query: 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201
GG GPY+QS+R +Y K ++ LLHNG+AY+CFC++ RL+L+RK+A+++ VP+YDNKCR
Sbjct: 93 GGQLGPYVQSQRTEIYSKAIEELLHNGTAYRCFCTERRLDLLRKEALRTRQVPRYDNKCR 152
Query: 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTY 261
+LT ++D L + + YCIRFKLT+H E DL+YG + +NV NEGDPV++KSD FPTY
Sbjct: 153 HLTTSEVDSLLAKGTPYCIRFKLTDHEEPLDDLIYGKVHHNVSDNEGDPVVMKSDQFPTY 212
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
HFANVVDDH M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF HLPLL+N +G+KLSKR
Sbjct: 213 HFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGWQPPKFGHLPLLVNADGTKLSKR 272
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
QGD+ ++ R + P AL+N+V + GGGF +H+ +K QL SM
Sbjct: 273 QGDIGIQHFRERGYFPQALVNYVVSAGGGF-EHRTNAKQQLLSM---------------- 315
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
Q +F ++ VN + +++ L++ NR EI + +S E LV
Sbjct: 316 ------------QALHEQFHIERVNSHPSRLNPELLDDLNRLEIVQRLSGN--ESRTKLV 361
Query: 442 EKLKQHIVNEFP-NSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+++Q + +P +S+L + ++++ VL W+S+R+ LQDL +F+WVKPS +
Sbjct: 362 NEVQQLVKEAYPQHSNLDLAEEHILDVLNWSSKRLTLLQDLTSSKLSFLWVKPSDFQIK- 420
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+LT L HL+ + F +D L L+ F+ ++ +++ MK LR
Sbjct: 421 -----------DLTAEQLAHLLQLINAIQDFHKDELNVKLKSFAQKENIKFPLMMKTLRA 469
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+LSGLK+GP V EMMEIL K T+ RL++ L
Sbjct: 470 ALSGLKEGPGVAEMMEILGKSVTLERLKEAL 500
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195496462|ref|XP_002095701.1| GE22553 [Drosophila yakuba] gi|194181802|gb|EDW95413.1| GE22553 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/587 (42%), Positives = 355/587 (60%), Gaps = 90/587 (15%)
Query: 8 LLKLTSYRKVHKAL--CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLR 65
+LK++ + + L H+ VRVRFAPSPT
Sbjct: 1 MLKISRRLLIQQCLRHAHTQVRVRFAPSPT------------------------------ 30
Query: 66 SSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLE 125
G LHLGGLRTALYN+L+A+ G F+LRIEDTDQ R VP A E+L
Sbjct: 31 --------------GHLHLGGLRTALYNFLYARHLGGKFLLRIEDTDQARLVPGASERLV 76
Query: 126 QDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRK 185
+DL W G+ DE GG GPY+QS+R Y K ++ LL NG+AY+CFC++ RL+L+RK
Sbjct: 77 EDLLWAGIEIDEGPGFGGQLGPYVQSQRTETYSKAIEELLRNGTAYRCFCTERRLDLLRK 136
Query: 186 DAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFH 245
+A+++ VP+YDNKCR+LT ++D L + + +CIRFKLT+H E +DL+YG + +NV
Sbjct: 137 EALRTRQVPRYDNKCRHLTPAEVDSLLAKETPHCIRFKLTDHEEPLEDLIYGQVHHNVSD 196
Query: 246 NEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFA 305
EGDPV++KSD FPTYHFANVVDDH M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF
Sbjct: 197 TEGDPVVMKSDQFPTYHFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGWQPPKFG 256
Query: 306 HLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365
HLPLL+N +G+KLSKRQGD+ ++ R + P AL+N+V + GGGF +H+ +K QL SM
Sbjct: 257 HLPLLVNADGTKLSKRQGDIGIQHFRERGYFPQALVNYVVSAGGGF-EHRENAKQQLLSM 315
Query: 366 KDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425
++L E +F ++ VN + +++ L++ NR EI
Sbjct: 316 RELYE----------------------------QFHIERVNSHPSRLNPELLDDLNRLEI 347
Query: 426 -RRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGK 484
+R+ +Q ++ LV++L + + PN L + +D++ VL W+S+R+ LQDL
Sbjct: 348 VQRLSGNESQTKLVKLVQQLVKQAYPQQPN--LDLAEDHILDVLHWSSKRLVLLQDLSSS 405
Query: 485 DFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFS 544
+F+WVKPS + +LT+G L HL+ + F +D L L+ F+
Sbjct: 406 KLSFLWVKPSDYQIK------------DLTVGQLAHLLQLINDIQDFHKDELNVKLKSFA 453
Query: 545 TEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
++ +++ MK LR +LSGLK+GP V EMMEIL K T+ RL++ L
Sbjct: 454 QKENIKFPQMMKTLRAALSGLKEGPGVAEMMEILGKAVTLERLKEAL 500
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357622083|gb|EHJ73689.1| hypothetical protein KGM_14500 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/535 (46%), Positives = 348/535 (65%), Gaps = 45/535 (8%)
Query: 57 KLWITEGLRSSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRF 116
K + L+S +P +++ + TG LHLGGLRTALYNYLFAKS G FILRIEDTDQTR
Sbjct: 14 KRYFYRNLKSLVP-RVRFAPSPTGYLHLGGLRTALYNYLFAKSRGGVFILRIEDTDQTRK 72
Query: 117 VPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCS 176
V AV+ L DL+W G+ E T GG GPY+QS+RL +YQ+ + LL NGSAYKCFC+
Sbjct: 73 VEGAVDALISDLEWAGIECHEGPTRGGTCGPYIQSERLDIYQEHISKLLANGSAYKCFCT 132
Query: 177 DSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVY 236
+ RLN++R+DAVKS +PKYDNKCRNL+ + I +K+K YCIRFKL++ +S++DL++
Sbjct: 133 ERRLNILRRDAVKSQRIPKYDNKCRNLSHQDIKDKIKAGIPYCIRFKLSSDIQSYEDLIF 192
Query: 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKA 296
G I+Y+V NEGDPV++KSDG+PTYHFANVVDDH M +SHVLRGVEWQISTTKH+LIYKA
Sbjct: 193 GGIAYDVSLNEGDPVLMKSDGYPTYHFANVVDDHLMGVSHVLRGVEWQISTTKHLLIYKA 252
Query: 297 FGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQR 356
FGWTPP+F HLPL++N +G+KLSKRQ D+ VE RN P AL+N++T GGGF +H
Sbjct: 253 FGWTPPEFGHLPLIVNSDGTKLSKRQNDVKVEDYRNKGIYPLALVNYITLSGGGF-NHVV 311
Query: 357 TSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTN 416
+L ++++L EF + V + +++
Sbjct: 312 GEGVRLKTIEELSA----------------------------EFQIDKVASHPSRLNSEI 343
Query: 417 LNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIF 476
L E NR EI+R + + ++ L+ I ++PN L + + ++ VL WA+ RI
Sbjct: 344 LEECNRLEIKRRLR--DDKLANEMIYTLRNIITEKYPNEHLNVSEVHIKSVLNWATSRIS 401
Query: 477 KLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSL 536
+++DLVGK F F+W+ P+ + L +V NL +G+LE LQ + F +D +
Sbjct: 402 RIEDLVGKKFGFLWILPAAKEL---------EVNKNLLVGLLES----LQGLERFEQDLI 448
Query: 537 ATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
LR FS ++ V++ MK LR+ LSGL +GPSV EMM++L K ++ R++ VL
Sbjct: 449 KENLRVFSEQKKVKFPVLMKSLRSVLSGLDEGPSVAEMMQLLGKVQSLERIKAVL 503
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289724794|gb|ADD18343.1| mitochondrial glutamyl-tRNA synthetase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/521 (46%), Positives = 344/521 (66%), Gaps = 45/521 (8%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LHLGGLRTALYNYL+A++ G F+LRIEDTDQTRF+ A E + +DL+W G+ D
Sbjct: 9 SPTGYLHLGGLRTALYNYLYARNKKGKFLLRIEDTDQTRFLAGATESIIEDLQWAGIAID 68
Query: 137 ESE-TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK 195
E GG YGPY QS+R +Y + VQTLL NGSAY+CFC++ RL L+RKDA ++ VPK
Sbjct: 69 EGPGQFGGPYGPYRQSERTQIYMENVQTLLKNGSAYRCFCTEKRLELLRKDAARTRQVPK 128
Query: 196 YDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS 255
YDNKCR L +E++ E L + YC+RFKLT++ E+ DL+YGD+ +NV ++EGDP+IIK+
Sbjct: 129 YDNKCRYLEKEKMHELLDKGIPYCVRFKLTDYEEALHDLIYGDVYHNVSNSEGDPIIIKT 188
Query: 256 DGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG 315
D FPTYHFANVVDDH M I+HV RGVEWQIST KH+L+YKAFGW PP F HLPLL+N +G
Sbjct: 189 DQFPTYHFANVVDDHLMAITHVFRGVEWQISTIKHLLMYKAFGWEPPNFGHLPLLINADG 248
Query: 316 SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN 375
+KLSKRQ D+ + R+ + P A++N+V + GGGF HQ+ +K + +MK+LVEK
Sbjct: 249 TKLSKRQDDIGIRHFRDRGYFPMAVLNYVISAGGGFR-HQQYAKPTIHNMKELVEK---- 303
Query: 376 ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQE 435
FD+ VN + +++ LNEFNR E+R ++
Sbjct: 304 ------------------------FDIVSVNSHPSRLNPDVLNEFNRLELRELLQNDLTA 339
Query: 436 EIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSI 495
++ L++++++ + +P L ++ ++ VL W+S+R+ LQDL+ +F+W+KPS
Sbjct: 340 DV--LIKQIQKLVRQTYPEEDLDLNSSHIKNVLQWSSQRLTFLQDLISPQLSFLWIKPSA 397
Query: 496 EHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFM 555
H S+ L L L L++ D FT+++L L++F+ ++ V++S M
Sbjct: 398 LHSSE------------LKKDQLMALRNTLKSAD-FTKENLKKLLKDFAKQENVKFSLLM 444
Query: 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRT 596
K+LRTSLSGLK+GP V EMM IL K+ T++RL D ++ T
Sbjct: 445 KVLRTSLSGLKEGPGVAEMMNILGKQVTLQRLEDSVQEKST 485
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307188501|gb|EFN73238.1| Probable glutamyl-tRNA synthetase, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/517 (47%), Positives = 343/517 (66%), Gaps = 45/517 (8%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LHLGGLRTALYNYLFA+++NG+FILRIEDTDQTR VP AVEKL+ DL W G++PD
Sbjct: 31 SPTGHLHLGGLRTALYNYLFARNNNGTFILRIEDTDQTRIVPGAVEKLQDDLLWAGIIPD 90
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
E T GG GPY+QS RL LY+++V LL+N SAY CFC+++RLNL+RK+A+K G +PKY
Sbjct: 91 EDPTRGGPTGPYVQSSRLELYKEQVLKLLNNESAYYCFCTETRLNLLRKEAIKCGQIPKY 150
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD 256
DN+CR+ ++E+ E LK+NS YCIRFKL++ + + D+VYG++ +++ EGDPVIIKSD
Sbjct: 151 DNRCRHFSKEEAKEMLKKNSSYCIRFKLSSTPKPFYDMVYGEVLHDISKTEGDPVIIKSD 210
Query: 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316
G+PTYHFANVVDDH M ISHVLRGVEWQIST KHI++Y AFGW PPK+ HLPL+LN +GS
Sbjct: 211 GYPTYHFANVVDDHFMEISHVLRGVEWQISTPKHIMLYNAFGWDPPKYGHLPLILNADGS 270
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
KLSKRQGD+ +E+ R P AL+N+V + GGGFH Q+ L+S ++L++K
Sbjct: 271 KLSKRQGDIKIESFREQGIFPLALLNYVISAGGGFHKEQQN--QNLYSYQELIKK----- 323
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEE 436
FD+ + NS K+ L EFN+ E+ ++ ++
Sbjct: 324 -----------------------FDINKLKVNSGKLMPEKLLEFNKLEMINLVR--NEKN 358
Query: 437 IRSLVEKLKQHIVNEFP----NSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVK 492
+ L E++K+ ++ F + SLQ+DD ++ L W+ RI L DLV ++ AF+W+
Sbjct: 359 HKFLTERIKRLVLKAFSERKNDGSLQLDDHHIISTLKWSQNRISTLNDLVTEELAFLWII 418
Query: 493 PSIEHLSQHPVESYGKV-MLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEY 551
P+I + E + +LN L ++ + D + + LREF+ + + +
Sbjct: 419 PNIASVPNIQTECSNTIKLLNAELVEID--------ASNYKTDWMISYLREFAEKNKIPF 470
Query: 552 STFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
+ MK+LR+ LSGLK GP V EMMEIL K+ T+ RL+
Sbjct: 471 AALMKILRSILSGLKVGPPVAEMMEILGKDRTLLRLQ 507
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195476716|ref|XP_002086216.1| GE23000 [Drosophila yakuba] gi|194186006|gb|EDW99617.1| GE23000 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/587 (42%), Positives = 354/587 (60%), Gaps = 90/587 (15%)
Query: 8 LLKLTSYRKVHKAL--CHSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLR 65
+LK++ + + L H+ VRVRFAPSPT
Sbjct: 1 MLKISRRLLIQQCLRHAHTQVRVRFAPSPT------------------------------ 30
Query: 66 SSIPLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLE 125
G LHLGGLRTALYN+L+A+ G F+LRIEDTDQ R VP A E+L
Sbjct: 31 --------------GHLHLGGLRTALYNFLYARHLGGKFLLRIEDTDQARLVPGASERLV 76
Query: 126 QDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRK 185
+DL W G+ DE GG GPY+QS+R Y K ++ LL NG+AY+CFC++ RL+L+RK
Sbjct: 77 EDLLWAGIEIDEGPGFGGQLGPYVQSQRTETYSKAIEELLRNGTAYRCFCTERRLDLLRK 136
Query: 186 DAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFH 245
+A+++ VP+YDNKCR+LT ++D L + + +CIRFKLT+H E +DL+YG + +NV
Sbjct: 137 EALRTRQVPRYDNKCRHLTPAEVDSLLAKETPHCIRFKLTDHEEPLEDLIYGQVHHNVSD 196
Query: 246 NEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFA 305
EGDPV++KSD FPTYHFANVVDDH M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF
Sbjct: 197 TEGDPVVMKSDQFPTYHFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGWQPPKFG 256
Query: 306 HLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365
HLPLL+N +G+KLSKRQGD+ ++ R + P AL+N+V + GGGF +H+ +K QL SM
Sbjct: 257 HLPLLVNADGTKLSKRQGDIGIQHFRERGYFPQALVNYVVSAGGGF-EHRANAKQQLLSM 315
Query: 366 KDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425
++L E +F ++ VN + +++ L++ NR EI
Sbjct: 316 RELYE----------------------------QFHIERVNSHPSRLNPELLDDLNRLEI 347
Query: 426 -RRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGK 484
+R+ +Q ++ LV++L + + PN L + +D++ VL W+S+R+ LQDL
Sbjct: 348 VQRLSGNESQTKLVKLVQQLVKQAYPQQPN--LDLAEDHILDVLHWSSKRLVLLQDLRSS 405
Query: 485 DFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFS 544
+F+WVKPS + +LT G L HL+ + F +D L L+ F+
Sbjct: 406 KLSFLWVKPSDYQIK------------DLTAGQLAHLLQLINAIQNFHKDELNVKLKSFA 453
Query: 545 TEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
++ +++ MK LR +LSGLK+GP V EMMEIL K T+ RL++ L
Sbjct: 454 QKENIKFPQMMKTLRAALSGLKEGPGVAEMMEILGKAVTLERLKEAL 500
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| RGD|1307904 | 523 | Ears2 "glutamyl-tRNA synthetas | 0.471 | 0.544 | 0.520 | 5.7e-107 | |
| MGI|MGI:1914667 | 523 | Ears2 "glutamyl-tRNA synthetas | 0.471 | 0.544 | 0.517 | 5.7e-107 | |
| UNIPROTKB|E2RMJ5 | 524 | EARS2 "Uncharacterized protein | 0.471 | 0.543 | 0.519 | 4.4e-105 | |
| UNIPROTKB|G3N260 | 526 | EARS2 "Uncharacterized protein | 0.471 | 0.541 | 0.522 | 5e-104 | |
| UNIPROTKB|F1SAB4 | 523 | EARS2 "Uncharacterized protein | 0.471 | 0.544 | 0.506 | 8.1e-104 | |
| UNIPROTKB|Q5ZJ66 | 502 | EARS2 "Probable glutamate--tRN | 0.436 | 0.525 | 0.515 | 4.3e-97 | |
| UNIPROTKB|F1NE50 | 502 | EARS2 "Probable glutamate--tRN | 0.436 | 0.525 | 0.515 | 1.1e-96 | |
| ZFIN|ZDB-GENE-060825-214 | 503 | zgc:153247 "zgc:153247" [Danio | 0.436 | 0.524 | 0.503 | 1.1e-94 | |
| FB|FBgn0036629 | 511 | CG4573 [Drosophila melanogaste | 0.624 | 0.739 | 0.433 | 3.4e-92 | |
| UNIPROTKB|Q5JPH6 | 523 | EARS2 "Probable glutamate--tRN | 0.555 | 0.642 | 0.455 | 5.1e-81 |
| RGD|1307904 Ears2 "glutamyl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 149/286 (52%), Positives = 196/286 (68%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK H GSFILR+EDTDQ+R VP A E +E L+W G+ PDES GG GPY QS
Sbjct: 59 YNYIFAKKHQGSFILRLEDTDQSRLVPGAAENIEDMLEWAGIPPDESPRQGGPAGPYYQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RLALY + + LL +G+AY CFCS RL L++K+A++S P+YDN+CRNL+Q Q+ +K
Sbjct: 119 QRLALYAQATEALLKSGAAYPCFCSPQRLELLKKEALRSRQTPRYDNRCRNLSQAQVAQK 178
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L + K IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDHH
Sbjct: 179 LATDPKPAIRFRLEEAVPAFQDLVYGWTQHEVASVEGDPVILKSDGFPTYHLACVVDDHH 238
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M+ISHVLRG EW +ST+KH+L+Y+A GW PP+FAH RQGD+ +E
Sbjct: 239 MSISHVLRGSEWLVSTSKHLLLYQALGWQPPQFAHLPLLLNRDGSKLSKRQGDIFLEHFA 298
Query: 332 NSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNA 376
+ FLP AL++ +TN G GF ++Q + +L + DL C++A
Sbjct: 299 ATGFLPEALLDIITNCGSGFAENQMGRTLPELITQFDLTRITCHSA 344
|
|
| MGI|MGI:1914667 Ears2 "glutamyl-tRNA synthetase 2 (mitochondrial)(putative)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 148/286 (51%), Positives = 195/286 (68%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK H GSFILR+EDTDQ+R VP A E +E L+W G+ PDES GG GPY QS
Sbjct: 59 YNYIFAKKHQGSFILRLEDTDQSRLVPGAAESIEDMLEWAGIPPDESPRRGGPAGPYCQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RLALY + + LL +G+AY CFC RL L++K+A++S P+YDN+CRNL+Q Q+ +K
Sbjct: 119 QRLALYAQATEALLRSGAAYPCFCLPQRLELLKKEALRSRQTPRYDNRCRNLSQAQVAQK 178
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L + K IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDHH
Sbjct: 179 LAVDPKPAIRFRLEEAVPAFQDLVYGWTQHEVASVEGDPVILKSDGFPTYHLACVVDDHH 238
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M+ISHVLRG EW +ST+KH+L+Y+A GW PP+FAH RQGD+ +E
Sbjct: 239 MSISHVLRGSEWLVSTSKHLLLYQALGWQPPRFAHLPLLLNRDGSKLSKRQGDIFLEHFA 298
Query: 332 NSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNA 376
+ FLP AL++ +TN G GF ++Q + +L + DL C++A
Sbjct: 299 ATGFLPEALLDIITNCGSGFAENQMGRTLPELITQFDLTRITCHSA 344
|
|
| UNIPROTKB|E2RMJ5 EARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.4e-105, Sum P(3) = 4.4e-105
Identities = 149/287 (51%), Positives = 199/287 (69%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK H GSFILR+EDTDQTR VP A E +E L+W G+ PDES GG GPY QS
Sbjct: 59 YNYIFAKKHQGSFILRLEDTDQTRLVPGAAENIEAMLEWAGIPPDESPRRGGPVGPYQQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK-YDNKCRNLTQEQIDE 210
+RL LY + + LL +G+AY CFCS RL+L++K+A+++ P+ YDN+CRNLTQ+Q+ +
Sbjct: 119 QRLELYAQATKALLESGAAYPCFCSPQRLDLLKKEALRNRQTPRRYDNRCRNLTQKQVAQ 178
Query: 211 KLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270
KL ++ K IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDH
Sbjct: 179 KLAKDPKPAIRFRLEGEAPAFQDLVYGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDH 238
Query: 271 HMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAI 330
HM ISHVLRG EW +ST+KH+L+Y+A GW PP+FAH RQGD+ +E
Sbjct: 239 HMGISHVLRGSEWLVSTSKHLLLYQALGWQPPRFAHLPLLLNKDGSKLSKRQGDIFLEQF 298
Query: 331 RNSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNA 376
++FLP+AL++ +TN G GF ++Q + +L + DL C++A
Sbjct: 299 AAADFLPDALLDIITNCGSGFAENQMGRTLPELITQFDLTRITCHSA 345
|
|
| UNIPROTKB|G3N260 EARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 150/287 (52%), Positives = 198/287 (68%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK H GSFILR+EDTDQTR VP A E +E L+W GV PDES GG GPYLQS
Sbjct: 59 YNYIFAKKHQGSFILRLEDTDQTRLVPGAAENIEDMLEWAGVPPDESPRRGGPAGPYLQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK-YDNKCRNLTQEQIDE 210
+RLALY + + LL +G+AY CFCS RL L++K+A+++ P+ YDN+CR+L+Q Q+ +
Sbjct: 119 QRLALYAQAAEALLKSGAAYPCFCSPQRLELLKKEALRNRQTPRRYDNRCRSLSQAQVAQ 178
Query: 211 KLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270
KL + K IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A+VVDDH
Sbjct: 179 KLATDPKPAIRFRLEGEAPAFQDLVYGWNRHEVASVEGDPVILKSDGFPTYHLASVVDDH 238
Query: 271 HMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAI 330
HM ISHVLRG EW +ST+KH+L+Y+A GW PP+FAH RQGD+ +E
Sbjct: 239 HMGISHVLRGSEWLVSTSKHLLLYQALGWQPPQFAHLPLLLNRDGSKLSKRQGDIFLEHF 298
Query: 331 RNSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNA 376
+ FLP+AL++ +TN G GF ++Q + +L + DL C++A
Sbjct: 299 AATGFLPDALLDIITNCGSGFAENQMGRTLPELITQFDLSRVTCHSA 345
|
|
| UNIPROTKB|F1SAB4 EARS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 8.1e-104, Sum P(3) = 8.1e-104
Identities = 145/286 (50%), Positives = 196/286 (68%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK H GSFILR+EDTDQTR VP A E +E L+W G+ PDES GG GPYLQS
Sbjct: 59 YNYIFAKKHGGSFILRLEDTDQTRLVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYLQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RLALY + + LL +G+AY CFCS RL L++++A+++ P+YDN+CR L+Q Q+ +K
Sbjct: 119 QRLALYAQATEALLKSGAAYPCFCSPQRLELLKREALRNHQTPRYDNRCRTLSQAQVAQK 178
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L ++ IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDHH
Sbjct: 179 LAKDPTPAIRFRLEGEAPAFQDLVYGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDHH 238
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M +SHVLRG EW +ST+KH+L+Y+A GW PP+FAH RQGD+ +E
Sbjct: 239 MGVSHVLRGSEWLVSTSKHLLLYQALGWQPPRFAHLPLLLNKDGSKLSKRQGDIFLEHFA 298
Query: 332 NSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNA 376
+ FLP+AL++ +TN G GF ++Q + +L + +L C++A
Sbjct: 299 ATGFLPDALLDIITNCGSGFAENQMGRTLPELIAQFNLARITCHSA 344
|
|
| UNIPROTKB|Q5ZJ66 EARS2 "Probable glutamate--tRNA ligase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 4.3e-97, Sum P(3) = 4.3e-97
Identities = 136/264 (51%), Positives = 178/264 (67%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK G+F+LR+EDTDQ R V A E +E L W G+ PDES GG +GPY QS
Sbjct: 38 YNYVFAKQQRGTFVLRVEDTDQGRVVAGAAESIEDMLHWAGIPPDESPRRGGPFGPYQQS 97
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
RL LY+ + LL G+AY+CFC+ RL L+RK+A+++ P+YDN+CR+LT +++ EK
Sbjct: 98 LRLDLYRAASEALLDRGAAYRCFCTPQRLELLRKEALRNQQTPRYDNRCRHLTPKEVAEK 157
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L + + +RF+L E +QDLVYG + V EGDPVI+K+DGFPTYH ANVVDDHH
Sbjct: 158 LAQGLDWVVRFRLERGVEPFQDLVYGWNKHEVAEVEGDPVILKADGFPTYHLANVVDDHH 217
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M ISHVLRG EW ST+KH+L+YKAFGW PP+F H RQGD+ +E
Sbjct: 218 MGISHVLRGTEWLTSTSKHLLLYKAFGWDPPQFGHLPLLLNKDGSKLSKRQGDIFLERFA 277
Query: 332 NSEFLPNALINFVTNFGGGFHDHQ 355
+LP AL++ +TN G GF + Q
Sbjct: 278 QEGYLPEALLDMITNCGSGFAEKQ 301
|
|
| UNIPROTKB|F1NE50 EARS2 "Probable glutamate--tRNA ligase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 1.1e-96, Sum P(3) = 1.1e-96
Identities = 136/264 (51%), Positives = 178/264 (67%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK G+F+LR+EDTDQ R V A E +E L W G+ PDES GG +GPY QS
Sbjct: 38 YNYVFAKQQRGTFVLRVEDTDQGRVVAGAAESIEDMLHWAGIPPDESPRRGGPFGPYQQS 97
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
RL LY+ + LL G+AY+CFC+ RL L+RK+A+++ P+YDN+CR+LT +++ EK
Sbjct: 98 LRLDLYRAASEALLDRGAAYRCFCTPQRLELLRKEALRNQQTPRYDNRCRHLTPKEVAEK 157
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L + + +RF+L E +QDLVYG + V EGDPVI+K+DGFPTYH ANVVDDHH
Sbjct: 158 LAQGLDWVVRFRLERGVEPFQDLVYGWNKHEVAEVEGDPVILKADGFPTYHLANVVDDHH 217
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M ISHVLRG EW ST+KH+L+YKAFGW PP+F H RQGD+ +E
Sbjct: 218 MGISHVLRGTEWLTSTSKHLLLYKAFGWDPPQFGHLPLLLNKDGSKLSKRQGDIFLEHFA 277
Query: 332 NSEFLPNALINFVTNFGGGFHDHQ 355
+LP AL++ +TN G GF + Q
Sbjct: 278 QEGYLPEALLDMITNCGSGFAEKQ 301
|
|
| ZFIN|ZDB-GENE-060825-214 zgc:153247 "zgc:153247" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 1.1e-94, Sum P(3) = 1.1e-94
Identities = 133/264 (50%), Positives = 180/264 (68%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YN+LF++ G FILR+EDTDQ R VP A E +E L+W G+ PDES GG+YGPY+QS
Sbjct: 40 YNFLFSRQRRGVFILRLEDTDQKRLVPGAAEHIEDMLEWAGIPPDESSRRGGDYGPYVQS 99
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RL LY + +LL+ G AY CFCS+ RL L++K+A +SG P+YDN+CR L +Q+++K
Sbjct: 100 ERLHLYTEAASSLLNTGHAYYCFCSNQRLELLKKEAQRSGHAPRYDNRCRRLQPQQVEQK 159
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L +RFKL TE +QDLV+G + V EGDPVI+K+DG+PTYH A+VVDDHH
Sbjct: 160 LAAGVPAVVRFKLHTGTEEFQDLVFGWTGHAVGAVEGDPVILKADGYPTYHLASVVDDHH 219
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M ISHVLRG EW IS+ KH+ +Y+A WTPP +AH RQGD+ +++ R
Sbjct: 220 MRISHVLRGCEWLISSAKHLQLYRALRWTPPTYAHLPLLLNRDGSKLSKRQGDIFLQSFR 279
Query: 332 NSEFLPNALINFVTNFGGGFHDHQ 355
+ LP L++ VT+ G GF D++
Sbjct: 280 DRGVLPETLLDLVTHAGSGFSDNR 303
|
|
| FB|FBgn0036629 CG4573 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 177/408 (43%), Positives = 256/408 (62%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YN+L+A+ G F+LRIEDTDQTR VP A E+L +DL W G+ DE GG GPY+QS
Sbjct: 43 YNFLYARHLGGKFLLRIEDTDQTRLVPGASERLVEDLLWAGIEIDEGPGFGGQLGPYVQS 102
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+R +Y K ++ LLHNG+AY+CFC++ RL+L+RK+A+++ VP+YDNKCR+LT ++D
Sbjct: 103 QRTEIYSKAIEELLHNGTAYRCFCTERRLDLLRKEALRTRQVPRYDNKCRHLTTSEVDSL 162
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L + + YCIRFKLT+H E DL+YG + +NV NEGDPV++KSD FPTYHFANVVDDH
Sbjct: 163 LAKGTPYCIRFKLTDHEEPLDDLIYGKVHHNVSDNEGDPVVMKSDQFPTYHFANVVDDHL 222
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M I+HVLRGVEWQISTTKH+L+YKAFGW PPKF H RQGD+ ++ R
Sbjct: 223 MGITHVLRGVEWQISTTKHLLLYKAFGWQPPKFGHLPLLVNADGTKLSKRQGDIGIQHFR 282
Query: 332 NSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDL-----VEKVCNNATYNRIKPTIK 386
+ P AL+N+V + GGGF +H+ +K QL SM+ L +E+V N+ +R+ P +
Sbjct: 283 ERGYFPQALVNYVVSAGGGF-EHRTNAKQQLLSMQALHEQFHIERV--NSHPSRLNPELL 339
Query: 387 EFGIFWFQTFFNEFDL-QLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLK 445
+ N ++ Q ++ N + L N E+++++ + S ++ +
Sbjct: 340 DD--------LNRLEIVQRLSGNESRTKLVN-------EVQQLVKEAYPQH--SNLDLAE 382
Query: 446 QHIVNEFPNSS--LQIDDDYLNYVLC--WASERIFKLQDLVGKDFAFI 489
+HI++ SS L + D + L W F+++DL + A +
Sbjct: 383 EHILDVLNWSSKRLTLLQDLTSSKLSFLWVKPSDFQIKDLTAEQLAHL 430
|
|
| UNIPROTKB|Q5JPH6 EARS2 "Probable glutamate--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 158/347 (45%), Positives = 216/347 (62%)
Query: 92 YNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151
YNY+FAK + GSFILR+EDTDQTR VP A E +E L+W G+ PDES GG GPY QS
Sbjct: 59 YNYIFAKKYQGSFILRLEDTDQTRVVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQS 118
Query: 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEK 211
+RL LY + + LL G+AY CFCS RL L++K+A+++ P+YDN+CRN++QEQ+ +K
Sbjct: 119 QRLELYAQATEALLKTGAAYPCFCSPQRLELLKKEALRNHQTPRYDNRCRNMSQEQVAQK 178
Query: 212 LKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271
L ++ K IRF+L ++QDLVYG + V EGDPVI+KSDGFPTYH A VVDDHH
Sbjct: 179 LAKDPKPAIRFRLEQVVPAFQDLVYGWNRHEVASVEGDPVIMKSDGFPTYHLACVVDDHH 238
Query: 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHXXXXXXXXXXXXXXRQGDMSVEAIR 331
M ISHVLRG EW +ST KH+L+Y+A GW PP FAH RQGD+ +E
Sbjct: 239 MGISHVLRGSEWLVSTAKHLLLYQALGWQPPHFAHLPLLLNRDGSKLSKRQGDVFLEHFA 298
Query: 332 NSEFLPNALINFVTNFGGGFHDHQR-TSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGI 390
FLP++L++ +TN G GF ++Q + +L + +L + C++A + K + EF
Sbjct: 299 ADGFLPDSLLDIITNCGSGFAENQMGRTLPELITQFNLTQVTCHSALLDLEK--LPEFNR 356
Query: 391 FWFQTFF-NEFD-------LQLVNENSCKVDLTNLNEFNRAEIRRVM 429
Q NE LQ++ E + L N + N + R++
Sbjct: 357 LHLQRLVSNESQRRQLVGKLQVLVEEAFGCQLQNRDVLNPVYVERIL 403
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9CXJ1 | SYEM_MOUSE | 6, ., 1, ., 1, ., 1, 7 | 0.4472 | 0.8280 | 0.9579 | yes | N/A |
| Q3Z6S3 | SYE_DEHE1 | 6, ., 1, ., 1, ., 1, 7 | 0.3365 | 0.7702 | 0.9628 | yes | N/A |
| B5RLR1 | SYE_BORDL | 6, ., 1, ., 1, ., 1, 7 | 0.3409 | 0.7966 | 0.9525 | yes | N/A |
| B0S0W2 | SYE_FINM2 | 6, ., 1, ., 1, ., 1, 7 | 0.3207 | 0.7785 | 0.9631 | yes | N/A |
| B2S076 | SYE_BORHD | 6, ., 1, ., 1, ., 1, 7 | 0.3403 | 0.7950 | 0.9796 | yes | N/A |
| B5Y7R0 | SYE_COPPD | 6, ., 1, ., 1, ., 1, 7 | 0.3232 | 0.7520 | 0.9743 | yes | N/A |
| B5YEP5 | SYE_DICT6 | 6, ., 1, ., 1, ., 1, 7 | 0.3320 | 0.7669 | 0.9727 | yes | N/A |
| A4XLI3 | SYE2_CALS8 | 6, ., 1, ., 1, ., 1, 7 | 0.3237 | 0.7652 | 0.9605 | yes | N/A |
| Q9F724 | SYE_CHLTE | 6, ., 1, ., 1, ., 1, 7 | 0.3629 | 0.7702 | 0.9264 | yes | N/A |
| A5FPX2 | SYE_DEHSB | 6, ., 1, ., 1, ., 1, 7 | 0.3307 | 0.7702 | 0.9568 | yes | N/A |
| B3EFG9 | SYE_CHLL2 | 6, ., 1, ., 1, ., 1, 7 | 0.3446 | 0.7801 | 0.9402 | yes | N/A |
| Q6MEN1 | SYE_PARUW | 6, ., 1, ., 1, ., 1, 7 | 0.3207 | 0.7834 | 0.9442 | yes | N/A |
| B3QQC6 | SYE_CHLP8 | 6, ., 1, ., 1, ., 1, 7 | 0.3657 | 0.7851 | 0.9443 | yes | N/A |
| P48525 | SYEM_YEAST | 6, ., 1, ., 1, ., 1, 7 | 0.3308 | 0.8033 | 0.9067 | yes | N/A |
| O51345 | SYE_BORBU | 6, ., 1, ., 1, ., 1, 7 | 0.3314 | 0.7950 | 0.9816 | yes | N/A |
| Q73R87 | SYE_TREDE | 6, ., 1, ., 1, ., 1, 7 | 0.3278 | 0.7917 | 0.9466 | yes | N/A |
| Q5ZJ66 | SYEM_CHICK | 6, ., 1, ., 1, ., 1, 7 | 0.4103 | 0.7983 | 0.9621 | yes | N/A |
| A4SGA5 | SYE_PROVI | 6, ., 1, ., 1, ., 1, 7 | 0.3428 | 0.7719 | 0.8963 | yes | N/A |
| Q3A9N9 | SYE_CARHZ | 6, ., 1, ., 1, ., 1, 7 | 0.3333 | 0.7454 | 0.9395 | yes | N/A |
| Q18CD6 | SYE_CLOD6 | 6, ., 1, ., 1, ., 1, 7 | 0.3304 | 0.7752 | 0.9513 | yes | N/A |
| B0BC83 | SYE_CHLTB | 6, ., 1, ., 1, ., 1, 7 | 0.3410 | 0.7504 | 0.8972 | yes | N/A |
| B5RRI1 | SYE_BORRA | 6, ., 1, ., 1, ., 1, 7 | 0.3428 | 0.7966 | 0.9525 | yes | N/A |
| A6TWK7 | SYE_ALKMQ | 6, ., 1, ., 1, ., 1, 7 | 0.3504 | 0.7818 | 0.9594 | yes | N/A |
| Q3B256 | SYE_PELLD | 6, ., 1, ., 1, ., 1, 7 | 0.3572 | 0.7785 | 0.9345 | yes | N/A |
| A8MLB5 | SYE_ALKOO | 6, ., 1, ., 1, ., 1, 7 | 0.3421 | 0.7867 | 0.9616 | yes | N/A |
| Q3ZYP4 | SYE_DEHSC | 6, ., 1, ., 1, ., 1, 7 | 0.3326 | 0.7702 | 0.9568 | yes | N/A |
| Q2S1L8 | SYE_SALRD | 6, ., 1, ., 1, ., 1, 7 | 0.3333 | 0.7834 | 0.9713 | yes | N/A |
| B0B818 | SYE_CHLT2 | 6, ., 1, ., 1, ., 1, 7 | 0.3410 | 0.7504 | 0.8972 | yes | N/A |
| B3QYR1 | SYE_CHLT3 | 6, ., 1, ., 1, ., 1, 7 | 0.3528 | 0.7950 | 0.9562 | yes | N/A |
| A1BDK8 | SYE_CHLPD | 6, ., 1, ., 1, ., 1, 7 | 0.3498 | 0.7834 | 0.9442 | yes | N/A |
| Q66JG3 | SYEM_XENTR | 6, ., 1, ., 1, ., 1, 7 | 0.4302 | 0.7801 | 0.9147 | yes | N/A |
| B3EMG1 | SYE_CHLPB | 6, ., 1, ., 1, ., 1, 7 | 0.3575 | 0.7752 | 0.9324 | yes | N/A |
| Q3KLQ4 | SYE_CHLTA | 6, ., 1, ., 1, ., 1, 7 | 0.3391 | 0.7504 | 0.8972 | yes | N/A |
| B4SCV6 | SYE_PELPB | 6, ., 1, ., 1, ., 1, 7 | 0.3625 | 0.7702 | 0.9282 | yes | N/A |
| Q7NI06 | SYE_GLOVI | 6, ., 1, ., 1, ., 1, 7 | 0.3365 | 0.7917 | 0.9037 | yes | N/A |
| O84451 | SYE_CHLTR | 6, ., 1, ., 1, ., 1, 7 | 0.3391 | 0.7504 | 0.8972 | yes | N/A |
| Q3ATL0 | SYE_CHLCH | 6, ., 1, ., 1, ., 1, 7 | 0.3575 | 0.7884 | 0.9501 | yes | N/A |
| P27000 | SYE_THET8 | 6, ., 1, ., 1, ., 1, 7 | 0.3359 | 0.7537 | 0.9743 | yes | N/A |
| Q5JPH6 | SYEM_HUMAN | 6, ., 1, ., 1, ., 1, 7 | 0.4363 | 0.8049 | 0.9311 | yes | N/A |
| B4S404 | SYE_PROA2 | 6, ., 1, ., 1, ., 1, 7 | 0.3471 | 0.7768 | 0.9343 | yes | N/A |
| Q0P499 | SYEM_DANRE | 6, ., 1, ., 1, ., 1, 7 | 0.3829 | 0.8115 | 0.9761 | yes | N/A |
| Q8RB93 | SYE1_THETN | 6, ., 1, ., 1, ., 1, 7 | 0.3181 | 0.7702 | 0.9688 | yes | N/A |
| B2KAV3 | SYE_ELUMP | 6, ., 1, ., 1, ., 1, 7 | 0.3227 | 0.7867 | 0.9754 | yes | N/A |
| Q72LI9 | SYE_THET2 | 6, ., 1, ., 1, ., 1, 7 | 0.3378 | 0.7537 | 0.9743 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.17 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| PRK01406 | 476 | PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed | 1e-161 | |
| TIGR00464 | 470 | TIGR00464, gltX_bact, glutamyl-tRNA synthetase, ba | 1e-119 | |
| COG0008 | 472 | COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synth | 1e-116 | |
| pfam00749 | 314 | pfam00749, tRNA-synt_1c, tRNA synthetases class I | 3e-98 | |
| PLN02627 | 535 | PLN02627, PLN02627, glutamyl-tRNA synthetase | 3e-85 | |
| PRK12558 | 445 | PRK12558, PRK12558, glutamyl-tRNA synthetase; Prov | 6e-73 | |
| PRK05710 | 299 | PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetas | 9e-67 | |
| TIGR03838 | 271 | TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA | 7e-64 | |
| PRK14895 | 513 | PRK14895, gltX, glutamyl-tRNA synthetase; Provisio | 4e-57 | |
| cd00808 | 239 | cd00808, GluRS_core, catalytic core domain of disc | 2e-55 | |
| PRK12410 | 433 | PRK12410, PRK12410, glutamylglutaminyl-tRNA synthe | 2e-50 | |
| cd00808 | 239 | cd00808, GluRS_core, catalytic core domain of disc | 4e-46 | |
| PRK04156 | 567 | PRK04156, gltX, glutamyl-tRNA synthetase; Provisio | 3e-35 | |
| TIGR00463 | 556 | TIGR00463, gltX_arch, glutamyl-tRNA synthetase, ar | 1e-32 | |
| cd00418 | 230 | cd00418, GlxRS_core, catalytic core domain of glut | 1e-31 | |
| cd00418 | 230 | cd00418, GlxRS_core, catalytic core domain of glut | 5e-23 | |
| cd09287 | 240 | cd09287, GluRS_non_core, catalytic core domain of | 3e-18 | |
| cd09287 | 240 | cd09287, GluRS_non_core, catalytic core domain of | 2e-14 | |
| TIGR00440 | 522 | TIGR00440, glnS, glutaminyl-tRNA synthetase | 5e-14 | |
| PLN02907 | 722 | PLN02907, PLN02907, glutamate-tRNA ligase | 1e-09 | |
| PLN03233 | 523 | PLN03233, PLN03233, putative glutamate-tRNA ligase | 5e-09 | |
| PTZ00402 | 601 | PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov | 8e-08 | |
| cd00807 | 238 | cd00807, GlnRS_core, catalytic core domain of glut | 1e-06 | |
| PRK14703 | 771 | PRK14703, PRK14703, glutaminyl-tRNA synthetase/Yqe | 3e-04 |
| >gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 470 bits (1213), Expect = e-161
Identities = 190/571 (33%), Positives = 276/571 (48%), Gaps = 100/571 (17%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G LH
Sbjct: 3 MKVRTRFAPSPT--------------------------------------------GYLH 18
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N+LFA+ H G FILRIEDTDQ R EA E + + LKW+G+ DE G
Sbjct: 19 IGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG- 77
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+RL +Y++ + LL G AY C+C+ L +R++ +G P+YD +CR+L
Sbjct: 78 PYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDL 137
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPT 260
T+E++ +L IRFK+ + DLV G+I F N D VI++SDG PT
Sbjct: 138 TKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIE---FPNSELDDFVILRSDGTPT 194
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+FA VVDDH M I+HV+RG + +T K IL+Y+A GW P FAHLPL+L +G KLSK
Sbjct: 195 YNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKLSK 254
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R G SVE R+ +LP AL+N++ G H Q ++FS+++L+E
Sbjct: 255 RHGATSVEQYRDMGYLPEALLNYLALLGWS-HGDQ-----EIFSLEELIEL--------- 299
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL+ V+++ + D+ L+ N IR + EE+ L
Sbjct: 300 -------------------FDLERVSKSPARFDIKKLDWLNGHYIRE-LDP---EELAEL 336
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+ D YL V+ ER L++L F +
Sbjct: 337 LLPWHLEQEGLDTE-----DGPYLEKVVPLLKERAKTLKELAEL-ARFFFEDFPEYDEDA 390
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
K + + +LE L+ +L+ + +T +++ ++ + E G++ LR
Sbjct: 391 AK-----KHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMPLRV 445
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+L+G GP + E ME+L KE + RLR L
Sbjct: 446 ALTGRTVGPPLFESMELLGKEEVLARLRKAL 476
|
Length = 476 |
| >gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-119
Identities = 179/567 (31%), Positives = 269/567 (47%), Gaps = 110/567 (19%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VR RFAPSPT G LH+G
Sbjct: 2 VRTRFAPSPT--------------------------------------------GYLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
G RTAL+NYLFAK G F+LRIEDTD R + EA E + + LKW+G+ DE
Sbjct: 18 GARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGLKWLGISWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS+RL +Y+K + LL G AY+C+CS RL +R++ + P+YD CRNL
Sbjct: 70 GPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDRHCRNLHN 129
Query: 206 EQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNE-GDPVIIKSDGFPTYHF 263
E+I+ L + +RFK+ S+ D V G+I++ ++E D VI+KSDG PTY+F
Sbjct: 130 EEIENALAKGIPPVVRFKIPQEGVVSFNDQVRGEITFQ--NSELDDFVILKSDGSPTYNF 187
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDD+ M I+HV+RG + +T K ILIYKA GW P FAHLP++L +G KLSKR G
Sbjct: 188 AVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWKIPVFAHLPMILGEDGKKLSKRDG 247
Query: 324 DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKP 383
S+ + +LP ALIN++ G D Q + FS+++L+E
Sbjct: 248 ATSIMQFKEQGYLPEALINYLALLGWSPPDDQ-----EFFSLEELIE------------- 289
Query: 384 TIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL-VE 442
F L V+++ K D L N I+ L E
Sbjct: 290 ---------------IFSLNRVSKSPAKFDWKKLQWLN------------AHYIKELPDE 322
Query: 443 KLKQHIVNEFPNSSLQ--IDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+L + + ++++ L +L ER+ L+++ F K ++ +
Sbjct: 323 ELFELLDPHLQKKVKTSTLNEEQLKELLLLFKERLKTLKEIAELIRLFFEDKKEVDEDAF 382
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
K + +LE L +LQ + +T + + + +++ + E G++ LR
Sbjct: 383 K------KHLKKNVKEVLEALKKKLQALEEWTAEEVKSAIKQIAEELGLKGGKVFMPLRL 436
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRL 587
+L+G GP + + + ++ K I RL
Sbjct: 437 ALTGKGHGPDLAQSLVLIGKTEVIERL 463
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences [Protein synthesis, tRNA aminoacylation]. Length = 470 |
| >gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 355 bits (912), Expect = e-116
Identities = 174/575 (30%), Positives = 258/575 (44%), Gaps = 115/575 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G LH
Sbjct: 8 VGVRTRFAPSPT--------------------------------------------GYLH 23
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+G RTAL NYL+A+ + G FILRIEDTD R PEA + + +DL+W+G+ DE
Sbjct: 24 IGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDE------ 77
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP-KYDNKCRN 202
GPY QS+R +Y + + L+ G AY C+C+ L +R+ G P YD RN
Sbjct: 78 --GPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERN 135
Query: 203 LTQEQIDEKLKENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPT 260
LT + L E +R K + + ++DLV G I + H D VI++ DG+PT
Sbjct: 136 LTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKH--PDFVILRYDGYPT 193
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+FA VVDDH M I+HVLRG + +T + I +Y+A GW PP +AHLPLLLN +G KLSK
Sbjct: 194 YNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGKKLSK 253
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R+G +S+ R +LP AL N + G G+ ++FS+++ ++
Sbjct: 254 RKGAVSIGEYRVEGWLPPALPNLLALLGRGY----PPEAIEIFSLEEGIKW--------- 300
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL +V+++ D L+ N R M E +
Sbjct: 301 -------------------FDLTIVSKSPAAFDRKKLDWLN----PRYMRVDPVEV---V 334
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
+E LK H+ E ++L ++ + V+ E L ++ DF F K
Sbjct: 335 IENLKPHLEEE--GATLPLNPEMGERVVPLTKET---LIEIERLDFFFFEDK-------- 381
Query: 501 HPVESYGKVMLN--LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558
E L + +LE L T +T++++ ++ + GV+ L
Sbjct: 382 ---EEVRLKRLANVIVAEVLEKDAEGLIT-SDWTKENIIHWVKAVARLFGVKGPKLFPPL 437
Query: 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
R +L+G P + + +E+L KE RL L
Sbjct: 438 RVALTGGYVEPELADTIELLGKEVQFERLGYALAD 472
|
Length = 472 |
| >gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), catalytic domain | Back alignment and domain information |
|---|
Score = 301 bits (774), Expect = 3e-98
Identities = 128/361 (35%), Positives = 175/361 (48%), Gaps = 63/361 (17%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VR RFAPSPT G LH+G
Sbjct: 2 VRTRFAPSPT--------------------------------------------GYLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTAL+NYLFAK++NG FILR +DTD R PE E + +DLKW+G+ DE
Sbjct: 18 HARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDLKWLGIKWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLV--PKYDNKCRNL 203
PY QS R +Y K + L+ G AY CFC+ L R++ G P+YD +C L
Sbjct: 70 KPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPRYDEECLRL 129
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH 262
+E++ + E K +RFK+ +DLV G I + D +K DG+PTY
Sbjct: 130 FEEEMRKGEAEGGKATLRFKIPMESPYVMRDLVRGRIKFEP-SALHDRTGLKWDGYPTYD 188
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
FA V+DD M I+HVLRG E +T K I IY+A GW P F H L LNL+G+KLSKR+
Sbjct: 189 FAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLDGTKLSKRK 248
Query: 323 GDMSV--EAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
+SV ++ P AL+NF+ G+ + F+ ++L++ N
Sbjct: 249 LSLSVFISQVKGWGDPPEALLNFLRRR--GWTPE---GIREFFTREELIKSFDLNRVSKS 303
Query: 381 I 381
+
Sbjct: 304 L 304
|
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 314 |
| >gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 3e-85
Identities = 130/349 (37%), Positives = 192/349 (55%), Gaps = 51/349 (14%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 44 GPVRVRFAPSPT--------------------------------------------GNLH 59
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+NYLFA+S G F+LRIEDTD R E+ E + +DLKW+G+ DE VGG
Sbjct: 60 VGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGG 119
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+R A+Y++ + LL +G Y CFC+D L ++++A L P+Y K
Sbjct: 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATA 179
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH 262
+ E++ +L + + Y RF++ DL+ G++S+N GD V+++S+G P Y+
Sbjct: 180 SDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNT-DTLGDFVLLRSNGQPVYN 238
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
F VDD M I+HV+R E +T + LIYKA G+ P+FAH+ L+L + SKLSKR
Sbjct: 239 FCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRH 298
Query: 323 GDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
G SV R +LP+A++N++ G +++++F++++LVEK
Sbjct: 299 GATSVGQFREMGYLPDAMVNYLALLGWN-----DGTENEIFTLEELVEK 342
|
Length = 535 |
| >gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 6e-73
Identities = 121/394 (30%), Positives = 172/394 (43%), Gaps = 83/394 (21%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
V RFAPSPT G LH+G
Sbjct: 3 VITRFAPSPT--------------------------------------------GYLHVG 18
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTAL N+L+A+ H G FILRI+DTD R E + + +DLKW+G+ D +
Sbjct: 19 NARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTF------ 72
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
QS R Y + + L G Y C+ + L L RK + GL P YD LT+
Sbjct: 73 ---RQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTE 129
Query: 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFAN 265
E+ E K RFKL + SW DL+ G+ S + + DPV+I++DG Y +
Sbjct: 130 EEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDA-ASLSDPVLIRADGSYLYTLPS 188
Query: 266 VVDDHHMNISHVLRGVEWQISTTK-HILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD 324
VVDD M I+H++RG E ++ T I I++A G PP FAHL LL +G LSKR G
Sbjct: 189 VVDDIDMGITHIIRG-EDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLSKRLGG 247
Query: 325 MSVEAIRNSEFLPNALINFVTNFG---------------GGFHDHQRTSKSQL-FSMKDL 368
+S+ ++R P A+ + + G F D S++ F +DL
Sbjct: 248 LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESF-DLSSFSRAPAKFDPEDL 306
Query: 369 VE---KVCNNATYNRIKPTIKEFGI-------FW 392
++ + + +K + GI FW
Sbjct: 307 ERLNARLLHALPFEAVKDRLAALGIPGEAAEAFW 340
|
Length = 445 |
| >gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 9e-67
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 17/246 (6%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH G L AL ++L A++H G ++LRIED D R VP A + + DL+W+G+ D
Sbjct: 15 SGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP 74
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+R Y+ + L G Y CFCS + G + Y
Sbjct: 75 --------VLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGI--YPG 124
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGF 258
CR+L + R ++ + ++ D + G ++ GD V+ ++DG
Sbjct: 125 TCRDLLHGPRN-------PPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGL 177
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
Y A VVDD ++HV+RG + ST + I + + G P++ HLPL+LN +G KL
Sbjct: 178 FAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKL 237
Query: 319 SKRQGD 324
SK+ G
Sbjct: 238 SKQNGA 243
|
Length = 299 |
| >gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 7e-64
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH G L AL +YL A++H G +++RIED D R VP A + + + L+ G+ D
Sbjct: 10 SGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE 69
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+R ALYQ + LL G AY C C+ + A G + Y
Sbjct: 70 --------VVYQSQRHALYQAALDRLLAAGLAYPCQCTRKEI----AAAHDGGGI--YPG 115
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGF 258
CRN + R ++ + ++ D + G ++ GD V+ ++DG
Sbjct: 116 TCRNGLPGRPGR------PAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGL 169
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
Y A VVDD I+HV+RG + ST + I + + G PP++ HLPL++N +G KL
Sbjct: 170 FAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEKL 229
Query: 319 SKRQG 323
SK+ G
Sbjct: 230 SKQNG 234
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid [Protein synthesis, tRNA and rRNA base modification]. Length = 271 |
| >gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 4e-57
Identities = 152/547 (27%), Positives = 257/547 (46%), Gaps = 82/547 (14%)
Query: 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
+ TG LH+G RTAL+NYLFA+ HNG F+LRIEDTD+ R EAVE + LKW+G+
Sbjct: 12 SPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGL--- 68
Query: 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196
N QSKR LY++ LL NG AY CF + R+ A+++ +
Sbjct: 69 -----DWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIF 123
Query: 197 DNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE-SWQDLVYGDISYNVFHNEGDPVIIKS 255
+++ R+ +K IR K + D + G++ H + D V++++
Sbjct: 124 NSEWRDKDPSIYPTDIKP----VIRLKTPREGSITIHDTLQGEVVIENSHID-DMVLLRA 178
Query: 256 DGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG 315
DG TY A VVDDH M I+H++RG + + + + IY+AFG+ P H+PL+ +G
Sbjct: 179 DGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG 238
Query: 316 SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN 375
+KLSKR G + +EA ++ +LP +L N++ G D + S +Q
Sbjct: 239 AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQ-------------- 284
Query: 376 ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV----MST 431
I W F+L + ++ K+D +N N +R + +++
Sbjct: 285 -------------AIDW-------FNLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTS 324
Query: 432 GTQEEIRSLVEKLKQHIV--NEFPNSS-------LQIDDDY---LNYVLCWASE--RIFK 477
T E + KL + + EF ++ + I +D L Y L A E + FK
Sbjct: 325 KTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYIDIREDASTGLTYKLPLAVELPKKFK 384
Query: 478 LQD-------------LVGKDFAFIWVKPSIEHLSQHPV---ESYGKVMLNLTLGILEHL 521
+ + LV + + + +L P+ + +++ N +++ +
Sbjct: 385 VSEQEIGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLIKQI 444
Query: 522 IPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKE 581
I L + F ++S+ +E + ++ + MK +R ++G+ PSV E+ EIL KE
Sbjct: 445 IENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKE 504
Query: 582 NTIRRLR 588
N ++RL+
Sbjct: 505 NILKRLK 511
|
Length = 513 |
| >gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-55
Identities = 71/174 (40%), Positives = 94/174 (54%), Gaps = 33/174 (18%)
Query: 254 KSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNL 313
K DGFPTYH ANVVDDH M I+HV+RG E ST K IL+Y+A GW PPKFAHLPL+LN
Sbjct: 99 KGDGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNP 158
Query: 314 NGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVC 373
+G KLSKR+GD S+ R +LP AL+N++ G D + F++++L+E
Sbjct: 159 DGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEE-----FFTLEELIEL-- 211
Query: 374 NNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427
FDL+ V+++ D L+ N IR
Sbjct: 212 --------------------------FDLERVSKSPAIFDPEKLDWLNGQYIRE 239
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 239 |
| >gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 2e-50
Identities = 107/351 (30%), Positives = 177/351 (50%), Gaps = 51/351 (14%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG +H+G LR A++NY+ AK N F++RIEDTD+ R + +++ + L G+ D+
Sbjct: 9 TGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKL 68
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS+ L +++ + LL A+ CFCS+ L ++ A +YD
Sbjct: 69 ---------VYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDG 119
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDP-VIIKSDG 257
C NL DE L N + +R K NHT S+ D + G++S+ +E D VI+++D
Sbjct: 120 TCENLED---DEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEP--DEIDSFVILRADK 174
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGS 316
PTY+FA VDD +IS ++RG + +T K ILI +A G+ +AHLP++LN G
Sbjct: 175 TPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGK 234
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
K+SKR SV+ + FLP+A+ N++ G + ++F++++ +E
Sbjct: 235 KMSKRDNASSVKWLLEQGFLPSAIANYLILLGN-------KTPKEIFTLEEAIE------ 281
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427
W FD++ ++++ K DL L NR ++
Sbjct: 282 ---------------W-------FDIEKISKSPAKFDLKKLRFINREHLKM 310
|
Length = 433 |
| >gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 4e-46
Identities = 63/147 (42%), Positives = 75/147 (51%), Gaps = 44/147 (29%)
Query: 25 NVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHL 84
VR RFAPSPT G LH+
Sbjct: 1 KVRTRFAPSPT--------------------------------------------GFLHI 16
Query: 85 GGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGN 144
GG RTAL+NYLFA+ H G FILRIEDTDQ R VPEA E + + LKW+G+ DE VGG
Sbjct: 17 GGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGP 76
Query: 145 YGPYLQSKRLALYQKEVQTLLHNGSAY 171
YGPY QS+RL +Y+K + LL G +
Sbjct: 77 YGPYRQSERLEIYRKYAEKLLEKGDGF 103
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 239 |
| >gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-35
Identities = 93/320 (29%), Positives = 131/320 (40%), Gaps = 97/320 (30%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTD--QTRFVPEAVEKLEQDLKWIGVVPDE 137
G LHLG R A+ N +AK + G FILR EDTD R PEA + + +DLKW+GV DE
Sbjct: 112 GPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE 171
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD---SRLNLIRKDAVKSGLVP 194
+QS RL +Y + + L+ G AY C C L +DA K
Sbjct: 172 V---------VIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKEL----RDAGKP---- 214
Query: 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVI-I 253
R+ + E N E W+ ++ G+ EG+ V+ +
Sbjct: 215 ---CPHRDKSPE------------------ENL-ELWEKMLDGEYK------EGEAVVRV 246
Query: 254 KSD------------------------G-----FPTYHFANVVDDHHMNISHVLRGVEWQ 284
K+D G +PTY+FA VDDH + ++HVLRG +
Sbjct: 247 KTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHI 306
Query: 285 ISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK-------RQGDMS---------VE 328
+T K IY FGW P+ H L + G LS +G+ S +
Sbjct: 307 DNTEKQRYIYDYFGWEYPETIHYG-RLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLR 365
Query: 329 AIRNSEFLPNALINFVTNFG 348
A+R LP A+ + G
Sbjct: 366 ALRRRGILPEAIRELIIEVG 385
|
Length = 567 |
| >gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G R A+ N+ +AK ++G I+R +DTD R PEA + + +DL+W+GV DE
Sbjct: 103 SGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEV 162
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
QS R+ Y + L+ G AY C C +R
Sbjct: 163 ---------VYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNRGEAC-------- 205
Query: 199 KCRNLTQE---QIDEKLK----ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGD 249
CR+ + E + E++ E +R K L + + +D V I GD
Sbjct: 206 HCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGD 265
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
+ +PT F+ +DDH + ++HVLRG + + K IY+ FGW PP+F H
Sbjct: 266 KYRV----YPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEPPEFIHWGR 321
Query: 310 L-LNLNGSKLSKR------QGDMS---------VEAIRNSEFLPNALINFVTNFGGGFHD 353
L ++ + + +G+ S + AIR P A+ F+ + G +D
Sbjct: 322 LKIDDVRALSTSSARKGILRGEYSGWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKIND 381
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases, including all known archaeal enzymes (as of 2010) may act on both tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA aminoacylation]. Length = 556 |
| >gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 33/175 (18%)
Query: 252 IIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLL 311
+IK G+P Y+F + VDD M I+HVLRG + +T +Y+A GW PP+F H P LL
Sbjct: 88 LIKKGGYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLL 147
Query: 312 NLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
+G+KLSKR+ + ++ A+R +LP AL N++ G +S D E
Sbjct: 148 LEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIG--------------WSKPDGHE- 192
Query: 372 VCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIR 426
+F + F ++ VN D L NR IR
Sbjct: 193 ------------------LFTLEEMIAAFSVERVNSADATFDWAKLEWLNREYIR 229
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230 |
| >gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 5e-23
Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG LH+G RTAL+N+ FA+ + G FILRIEDTD R PE VE + +DLKW+G+ DE
Sbjct: 11 TGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE- 69
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNG 168
GPY QS R LY+ + L+ G
Sbjct: 70 -------GPYRQSDRFDLYRAYAEELIKKG 92
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230 |
| >gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-18
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVP--EAVEKLEQDLKWIGVVPDE 137
G LHLG R A+ N +AK + G FILR +DTD P EA + + +DL+W+GV DE
Sbjct: 12 GPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE 71
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAY 171
+ S R+ LY + + L+ G AY
Sbjct: 72 V---------VIASDRIELYYEYARKLIEMGGAY 96
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240 |
| >gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317
+PT +FA VDDH + ++HVLRG + +T K IY+ FGW P+ H L + G K
Sbjct: 108 WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWG-RLKIEGGK 166
Query: 318 LSK---RQGDMS-------------VEAIRNSEFLPNALINFVTNFG 348
LS R+G S + A+R P A+ +F+ G
Sbjct: 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVG 213
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240 |
| >gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 5e-14
Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 57/302 (18%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ N+ +AK +NG+ LR +DT+ + PE VE +++D++W+G +
Sbjct: 11 GYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKI 70
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y + + R A L+ G AY + + R P ++
Sbjct: 71 RYSSDY--FDELYRYAE------ELIKKGLAYVDELTPEEIREYRGTLTD----PGKNSP 118
Query: 200 CRNLTQEQ---IDEKLK----ENSKYCIRFKLTNHTESWQ--DLVYGDISYNVFHNEGDP 250
R+ + E+ + EK++ + K +R K+ + D V I + H G
Sbjct: 119 YRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTK 178
Query: 251 VIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLL 310
I +P Y F + + D NI+H L +E+Q + + + W H+
Sbjct: 179 WCI----YPMYDFTHCISDAMENITHSLCTLEFQDNR-------RLYDWVLDNI-HIFPR 226
Query: 311 --------LNLNGSKLSKRQGDM----------------SVEAIRNSEFLPNALINFVTN 346
LNL G+ LSKR+ ++ +R + P ++ F
Sbjct: 227 PAQYEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNR 286
Query: 347 FG 348
G
Sbjct: 287 IG 288
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases [Protein synthesis, tRNA aminoacylation]. Length = 522 |
| >gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G + AL N FA+ + G I+R +DT+ ++ E VE + +D++ +G+ D
Sbjct: 223 SGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAV 282
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
T +Y P L + + +K L+ G AY D+ +RK+ + ++
Sbjct: 283 -TYTSDYFPQL----MEMAEK----LIKEGKAY---VDDTPREQMRKERMD-----GIES 325
Query: 199 KCRNLTQEQ---IDEKLKENSKY----CIRFKL--TNHTESWQDLVYGDISYNVFHNEGD 249
KCRN + E+ + +++ S+ C+R KL + +S +D VY + H G
Sbjct: 326 KCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGS 385
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEW 283
K +PTY FA D ++H LR E+
Sbjct: 386 ----KYKVYPTYDFACPFVDALEGVTHALRSSEY 415
|
Length = 722 |
| >gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 5e-09
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 31/253 (12%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
+G LH+G + AL N +A+ + G ILR +DT+ ++ E E + +DL I + PD S
Sbjct: 21 SGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPD-S 79
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
+ +Y + + Y L+ G AY ++ ++ +K + ++
Sbjct: 80 VSFTSDY-----FEPIRCYAI---ILIEEGLAY--------MDDTPQEEMKKERADRAES 123
Query: 199 KCRNLTQEQIDEKLKENSK-------YCIRFKLTNHTE--SWQDLVYGDISYNVFHNEGD 249
K RN + E+ E KE +C+R K+ ++ + +D V + H G
Sbjct: 124 KHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSG- 182
Query: 250 PVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309
+PTY A + D ++H LR E+ + I KA G P+ H
Sbjct: 183 ---TAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFA 238
Query: 310 LLNLNGSKLSKRQ 322
+N + LSKR+
Sbjct: 239 RMNFMNTVLSKRK 251
|
Length = 523 |
| >gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 30/254 (11%)
Query: 78 STGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDE 137
++G LH+G + AL N + A + G + R +DT+ ++ + + DL +GV D
Sbjct: 61 ASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWD- 119
Query: 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197
GP S + L ++ + L+ G AY + R D V +
Sbjct: 120 -------VGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPT------- 165
Query: 198 NKCRNLTQE-------QIDEKLKENSKYCIRFKLT--NHTESWQDLVYGDISYNVFHNEG 248
K R+++ E ++ + E + C+R K++ N ++ +D V ++ +G
Sbjct: 166 -KYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQG 224
Query: 249 DPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLP 308
K +PTY F + D ++H LR E+ ++ A G P
Sbjct: 225 ----TKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFS 280
Query: 309 LLLNLNGSKLSKRQ 322
LN+ S +SKR+
Sbjct: 281 -RLNMEYSVMSKRK 293
|
Length = 601 |
| >gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPD 136
G LH+G + L N+ +AK + G LR +DT+ + E V+ +++D+KW+G+ P
Sbjct: 12 GYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPY 68
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238 |
| >gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ L N+ A+ + G LR++DT+ E VE ++ D++W+G E
Sbjct: 42 GYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHL 101
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAY 171
+Y +Y Q L+ G AY
Sbjct: 102 YYASDYFE-------RMYAYAEQ-LIKMGLAY 125
|
Length = 771 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| KOG1149|consensus | 524 | 100.0 | ||
| PLN02627 | 535 | glutamyl-tRNA synthetase | 100.0 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 100.0 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 100.0 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 100.0 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 100.0 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 100.0 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 100.0 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 100.0 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 100.0 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 100.0 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 100.0 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 100.0 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 100.0 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 100.0 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 100.0 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 100.0 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 100.0 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 100.0 | |
| KOG1148|consensus | 764 | 100.0 | ||
| KOG1147|consensus | 712 | 100.0 | ||
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.95 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.91 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.9 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.87 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 99.87 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.84 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.84 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.83 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.83 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.82 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 99.81 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.81 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.8 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 99.78 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 99.69 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.6 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 99.58 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.57 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 99.55 | |
| KOG2007|consensus | 586 | 99.5 | ||
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 99.44 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 99.42 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 99.41 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 99.37 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 99.37 | |
| PLN02224 | 616 | methionine-tRNA ligase | 99.35 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 99.35 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 99.33 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.32 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.3 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.3 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 99.3 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.26 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 99.22 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.2 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.19 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 99.15 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 99.13 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 99.13 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 98.93 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 98.84 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 98.8 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 98.72 | |
| KOG0436|consensus | 578 | 98.59 | ||
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 98.58 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 98.31 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 98.18 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 98.17 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 98.1 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 98.06 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.95 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 97.91 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 97.89 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 97.82 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 97.81 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 97.73 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 97.71 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 97.71 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 97.69 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 97.67 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 97.64 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 97.61 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 97.59 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 97.58 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 97.55 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 97.52 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 97.5 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 97.5 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 97.48 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 97.44 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 97.43 | |
| KOG0435|consensus | 876 | 97.34 | ||
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 97.3 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 97.28 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 97.28 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 97.23 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 97.22 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 97.14 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 96.84 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 96.7 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 96.61 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 96.32 | |
| KOG4426|consensus | 656 | 96.3 | ||
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 96.3 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 96.16 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 95.58 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 95.31 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 95.24 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 95.19 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 95.13 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 94.54 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 94.51 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 94.29 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 93.66 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 93.62 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 93.38 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 93.31 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 93.04 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 91.79 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 91.53 | |
| KOG0432|consensus | 995 | 90.99 | ||
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 90.58 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 89.96 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 89.78 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 89.6 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 88.83 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 88.14 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 87.87 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 86.28 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 82.37 |
| >KOG1149|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-142 Score=1108.56 Aligned_cols=479 Identities=45% Similarity=0.805 Sum_probs=440.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||++|||||||||||++||+|||||||||++|.++|++++|.++|+|+||+|||||.+|||||||.||+|+++|++
T Consensus 44 GfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~k 123 (524)
T KOG1149|consen 44 GFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKK 123 (524)
T ss_pred cceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
||+.|++.|+||+||||+++++.+|+++.+.++.|+||++|+++|.+|+..+++.|.|+|||||+|.....|+|+|+|+|
T Consensus 124 yae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v 203 (524)
T KOG1149|consen 124 YAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKV 203 (524)
T ss_pred HHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++...+.|||||+||||+||||||||||||+|||||||||+||++||+||++||+||||++|.|+|+|||+|+||+|||
T Consensus 204 ~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLS 283 (524)
T KOG1149|consen 204 NHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLS 283 (524)
T ss_pred hccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhh
Confidence 99987779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+++|..|+++||+|||++||++++|||. ..+.+.|||+|||+ .
T Consensus 284 KRqgD~~vs~~~e~G~LPeallN~ial~Gwg~-----~~~~~f~sl~eLie----------------------------q 330 (524)
T KOG1149|consen 284 KRQGDASVSHYREQGYLPEALLNYIALLGWGF-----RTENEFFSLEELIE----------------------------Q 330 (524)
T ss_pred hhcCcchHHHHHHcCCChHHHHHHHHHcCCCc-----ccccccccHHHHHH----------------------------H
Confidence 99999999999999999999999999999998 46679999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQ 479 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~ 479 (605)
|++++++++++++|.+||.|+|++||++...++ ....++++.+++.+.+.++.+....+..++.+++.+.+++++.++
T Consensus 331 F~i~~ltk~~a~ld~ekL~~~Nr~~lqr~~~n~--s~l~~lv~~~q~~l~e~y~~s~~~~~~~~~k~iL~l~~~~~~~l~ 408 (524)
T KOG1149|consen 331 FSIERLTKSNAILDSEKLRFLNRLHLQRLISNE--SKLRELVDKLQPLLKEAYGTSSDNEAKEVLKDILLLVTGSLKRLQ 408 (524)
T ss_pred hchhhhcccccccCHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHhccchhHHH
Confidence 999999999999999999999999999887776 678899999999999988755556678899999999999999999
Q ss_pred hhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhc-cCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 480 DLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQ-TCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 480 dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~-~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
||.+. +.|||.+|.........++ +.+..+++.++..+. ...+++.+.++..+++++++++.|.+.+|++|
T Consensus 409 dl~s~-~~~~f~~P~d~qa~~d~~s-------e~~~~~ia~l~~~l~~~~~~~~~~e~n~~lk~~a~~~~~k~k~~~~~l 480 (524)
T KOG1149|consen 409 DLLSE-LSFFFTRPSDKQAVEDLLS-------ENVASLIAHLLKILNPSALELEQDEWNSSLKAFAKEHQRKLKKLMKLL 480 (524)
T ss_pred Hhhhh-hheeeeccchhhHHHHHhh-------HhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 99994 9999999953322111111 112111222222221 13467889999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhcccccc
Q psy16872 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRTVKNST 601 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~~~~~~ 601 (605)
|+||+|+.+||+++++|++||++++.+||+.++......+|+-
T Consensus 481 R~aL~G~~~Gp~iaemi~~lGk~e~~eRl~~~l~~~~~~l~k~ 523 (524)
T KOG1149|consen 481 RVALSGKLPGPPIAEMIELLGKKEVEERLKELLESLWLELNKD 523 (524)
T ss_pred HHHHhCCCCCCcHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999988877764
|
|
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-130 Score=1070.78 Aligned_cols=463 Identities=32% Similarity=0.555 Sum_probs=414.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||.+||+||||+||+|+++
T Consensus 53 SPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~~ 132 (535)
T PLN02627 53 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAI 132 (535)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHHH
Confidence 44499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccc
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLV 235 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v 235 (605)
|+++|++|+++|+||+||||+++++++|+.+.+.|.+|.|||+||+++++|+.+++.+|.+++||||+|. +.+.|+|+|
T Consensus 133 Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i 212 (535)
T PLN02627 133 YKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLI 212 (535)
T ss_pred HHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeee
Confidence 9999999999999999999999999999988888889999999999999999999999999999999995 678999999
Q ss_pred cceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC
Q psy16872 236 YGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG 315 (605)
Q Consensus 236 ~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg 315 (605)
+|++++++. ..+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|++|
T Consensus 213 ~G~i~~~~~-~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g 291 (535)
T PLN02627 213 RGEVSWNTD-TLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR 291 (535)
T ss_pred eeeeeeccc-cCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC
Confidence 999999864 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccc
Q psy16872 316 SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQT 395 (605)
Q Consensus 316 ~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (605)
+|||||+|+++|.+||++||+|+||+||++++||+. .+++|+||++||++
T Consensus 292 ~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~-----~~~~e~~~~~eli~------------------------- 341 (535)
T PLN02627 292 SKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWND-----GTENEIFTLEELVE------------------------- 341 (535)
T ss_pred CccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCC-----CCCCCcCCHHHHHH-------------------------
Confidence 999999999999999999999999999999999987 45679999999999
Q ss_pred ccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccc
Q psy16872 396 FFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERI 475 (605)
Q Consensus 396 ~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri 475 (605)
.|++++|+++|++||.+||+|||++||++++.+ ++++.+.+++.+.... ...+.+|+.+++.++++|+
T Consensus 342 ---~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~-------el~~~~~p~l~~~~~~--~~~~~~~l~~~~~l~~~ri 409 (535)
T PLN02627 342 ---KFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEE-------ELVKLVGERWKSAGIL--KESDGSFVKEAVELLKDGI 409 (535)
T ss_pred ---hCCHhhCCCcccccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987533 4888888887643110 1124589999999999999
Q ss_pred cchHhhhhhhhhccccCC---CcCccCCCCccchhhHHHHHHHHHHHhhhhhhcc-----CCCCChhhHHHHHHHHHHHh
Q psy16872 476 FKLQDLVGKDFAFIWVKP---SIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQT-----CDPFTRDSLATPLREFSTEQ 547 (605)
Q Consensus 476 ~~l~dl~~~~~~ff~~~p---~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~-----~e~~~~e~i~~~lk~~~~e~ 547 (605)
.+|.|+++. ..|||..+ .+.++.. .+...+.+.+++..+...|++ ..+|+.++++..+++++++.
T Consensus 410 ~~L~d~~~~-~~~~f~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~e~~ 482 (535)
T PLN02627 410 ELVTDADKE-LLNLLSYPLAATLSSPEA------KTVVEDNFSEVADALIAAYDSGELAAALEEGHDGWQKWVKAFGKAL 482 (535)
T ss_pred CcHHHHHHH-HHHHhcCCCccccChHHH------HHhhhHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHh
Confidence 999999998 67877632 2221110 111112333445444433322 23478999999999999999
Q ss_pred CCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 548 GVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 548 giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
|+|++++|||||+||||+.+||+|+++|++|||+++++||-.
T Consensus 483 g~k~k~l~~PlR~AlTG~~~gP~l~~~~~lLGke~~~~Rl~~ 524 (535)
T PLN02627 483 KRKGKRLFMPLRVALTGKMHGPDVGESLVLLHKAGTPDSVTE 524 (535)
T ss_pred CCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHhhc
Confidence 999999999999999999999999999999999999999964
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-124 Score=1023.80 Aligned_cols=460 Identities=39% Similarity=0.668 Sum_probs=417.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||||||++||+|||||||||++|+++++++.|+++|+||||+|||+|.+| +||||+||+|+++|++
T Consensus 15 G~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~-~~gpy~QS~r~~~y~~ 93 (476)
T PRK01406 15 GYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG-PYGPYRQSERLDIYKE 93 (476)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccC-CCCceehhcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+|+||+++.+|+.+++.+|+++|||||+|.. .+.|+|+|+|+
T Consensus 94 ~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~ 173 (476)
T PRK01406 94 YAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGE 173 (476)
T ss_pred HHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccce
Confidence 99999999999999999999999999998889999999999999999999999999999999999964 88999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||+||||||+|||||+|+|||||||+||++|||+|+++|+||||++|.|+|+|+|+|.+|+||
T Consensus 174 ~~~~~~-~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g~kl 252 (476)
T PRK01406 174 IEFPNS-ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKL 252 (476)
T ss_pred EEeccc-cCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcc
Confidence 999865 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|++||++||.|+|+.||++++||+. +.+++++++++++
T Consensus 253 SKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~------~~~e~~~~~~~i~---------------------------- 298 (476)
T PRK01406 253 SKRHGATSVEQYRDMGYLPEALLNYLALLGWSH------GDQEIFSLEELIE---------------------------- 298 (476)
T ss_pred cCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCC------CccccCCHHHHHH----------------------------
Confidence 999999999999999999999999999999885 4678999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHH-HHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQ-HIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++++++|+.||.+||.|+|++||++++.+ ++++.+.+ .+.... ....+++++.+++.++++|+++
T Consensus 299 ~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~~~-------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 368 (476)
T PRK01406 299 LFDLERVSKSPARFDIKKLDWLNGHYIRELDPE-------ELAELLLPWHLEQEG---LDTEDGPYLEKVVPLLKERAKT 368 (476)
T ss_pred hcChhhCCCCCccccHHHHHHHHHHHHHhCCHH-------HHHHHHhHHHhhhcc---cccccHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999987533 47777766 443211 1223568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
++|+.+. ..|||..|....+.. . .+.+.+....+|.++.+.|+..++|+.++|++.+++++++.|+|+|++|+|
T Consensus 369 l~d~~~~-~~~ff~~~~~~~~~~--~---~~~l~~~~~~~L~~l~~~L~~l~~~~~e~i~~~i~~iak~~gik~k~lf~p 442 (476)
T PRK01406 369 LKELAEL-ARFFFEDFPEYDEDA--A---KKHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEELGLKGGKLFMP 442 (476)
T ss_pred HHHHHHH-HHHHhcCCcccChHH--H---HHhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 678887664321110 0 011112335566666777776678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||++|++||+.|+
T Consensus 443 LR~ALtG~~~GP~L~~il~lLGke~vl~RL~~al 476 (476)
T PRK01406 443 LRVALTGRTVGPPLFESMELLGKEEVLARLRKAL 476 (476)
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-123 Score=1003.67 Aligned_cols=433 Identities=30% Similarity=0.499 Sum_probs=393.6
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||||||++||+|||||||||++|+++++++.|+++|+||||+||++ |+||+|++.|++
T Consensus 13 G~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~---------y~QSer~~~y~~ 83 (445)
T PRK12558 13 GYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRT---------FRQSDRFDRYDE 83 (445)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCcc---------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999984 899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||++||+++|+.+.+.|.+|.|+|+||+++.+|+.++..+|.+++||||++.+.+.|+|+|+|.+
T Consensus 84 ~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~ 163 (445)
T PRK12558 84 AAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQ 163 (445)
T ss_pred HHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEe
Confidence 99999999999999999999999999988888889999999999999999999999999999999878889999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||++.+|+|||
T Consensus 164 ~~~~~-~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g~KLS 242 (445)
T PRK12558 164 SIDAA-SLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLS 242 (445)
T ss_pred ecccc-cCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCccccc
Confidence 99865 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+++|.+||++||+||||+||++++||+. .++++||++||++ .
T Consensus 243 KR~g~~sv~~~r~~G~~Peai~n~la~lG~s~------~~~e~~~~~eli~----------------------------~ 288 (445)
T PRK12558 243 KRLGGLSIRSLREDGIEPMAIASLLARLGTSD------PVEPYTSMEELAE----------------------------S 288 (445)
T ss_pred ccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCC------CCcccCCHHHHHH----------------------------h
Confidence 99999999999999999999999999999986 3468999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQ 479 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~ 479 (605)
||+++|+++|++||.+||.|||++||++++.+ ++++.+.+++.+. .+...++.++++|++++.
T Consensus 289 F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~~~-------~l~~~~~~~~~~~----------~~~~~~~~l~~~r~~~l~ 351 (445)
T PRK12558 289 FDLSSFSRAPAKFDPEDLERLNARLLHALPFE-------AVKDRLAALGIPG----------EAAEAFWLAVRGNLDKLS 351 (445)
T ss_pred CCHhhCCCccccCCHHHHHHHHHHHHHhCCHH-------HHHHHHHHhhccc----------cccHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999987533 4777776655311 012246699999999999
Q ss_pred hhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHH
Q psy16872 480 DLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLR 559 (605)
Q Consensus 480 dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLR 559 (605)
|+.+. ..|||..+... .. +....++..+++.|+. ++|+.+++++.+++++++.|+|++++|||||
T Consensus 352 e~~~~-~~~ff~~~~~~------~~-------~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~g~k~~~~~~plR 416 (445)
T PRK12558 352 DAADW-WQIVHGPITPV------IL-------EEDRAFLKQAAALLPE-GPWDEDTWKAWTAAVKEATGRKGKALFMPLR 416 (445)
T ss_pred HHHHH-HHHHcCCCccc------cc-------hhHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99998 67777654311 00 1122344455555653 6799999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHhCHHHHHHHHH
Q psy16872 560 TSLSGLKQGPSVGEMMEILTKENTIRRLR 588 (605)
Q Consensus 560 iALTG~~~GP~L~eim~lLGkee~l~RL~ 588 (605)
+||||+.+||+|+++|++|||++|++||.
T Consensus 417 ~altG~~~gP~l~~~~~~lGk~~~l~Rl~ 445 (445)
T PRK12558 417 LALTGREHGPELAKLLPLIGRERAIARLT 445 (445)
T ss_pred HHHcCCCCCCCHHHHHHHhChHHHHhhcC
Confidence 99999999999999999999999999983
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-120 Score=991.34 Aligned_cols=449 Identities=31% Similarity=0.539 Sum_probs=398.6
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 15 G~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~--------py~QSeR~~~Y~~ 86 (513)
T PRK14895 15 GFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGE--------VIFQSKRNNLYKE 86 (513)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC--------ceeEeCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++|+++|+.+.+.|..|.|+|+||++++++. ..|.+++||||+|. +.+.|+|+|+|.
T Consensus 87 ~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~----~~~~~~~iR~k~p~~~~~~~~D~v~G~ 162 (513)
T PRK14895 87 AALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY----PTDIKPVIRLKTPREGSITIHDTLQGE 162 (513)
T ss_pred HHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh----hcCCCeeEEEEcCCCCceEEEeecccc
Confidence 9999999999999999999999999988888888999999999998753 35789999999995 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||.||||||+|||||+|||||||||+||++|||+|+++|+||||++|.|+|+|+|+|.+|+||
T Consensus 163 ~~~~~~-~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g~KL 241 (513)
T PRK14895 163 VVIENS-HIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADGAKL 241 (513)
T ss_pred eecccc-cCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCCCcc
Confidence 999864 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+|||++||||. +.+|+||++||++
T Consensus 242 SKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~------~~~e~~~~~el~~---------------------------- 287 (513)
T PRK14895 242 SKRHGALGIEAYKDMGYLPESLCNYLLRLGWSH------GDDEIISMTQAID---------------------------- 287 (513)
T ss_pred ccccCchhHHHHHHCCCCHHHHHHHHHHhCCCC------CCcCCCCHHHHHh----------------------------
Confidence 999999999999999999999999999999986 3579999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCC------------------------C
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFP------------------------N 454 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~------------------------~ 454 (605)
.|++++|+++|++||++||.|||++||+.++.+ ++++.+.+++.+... .
T Consensus 288 ~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~-------el~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (513)
T PRK14895 288 WFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDND-------SLTSKTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYID 360 (513)
T ss_pred hCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999987533 466666666653110 0
Q ss_pred -------C----------------CCCCCHHHHHHHHHHhhccccchHhhhhhhhhccccC-CCcCccCCCCccchhhHH
Q psy16872 455 -------S----------------SLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVK-PSIEHLSQHPVESYGKVM 510 (605)
Q Consensus 455 -------~----------------~~~~~~~~l~~vl~l~~~ri~~l~dl~~~~~~ff~~~-p~~~~~~~~~~~~~~~~~ 510 (605)
. ......+|+.+++.++++|+++|.|+++. ..|||.. |...+... .+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~r~~~l~d~~~~-~~~~f~~~~~~~~~~~------~~~~ 433 (513)
T PRK14895 361 IREDASTGLTYKLPLAVELPKKFKVSEQEIGYIKQAMPSLLVRSETLLELTRL-AQIYLVDSPIIYSQDS------KEII 433 (513)
T ss_pred cccccccccccccccccccccccccccccHHHHHHHHHHHHhhcCcHHHHHHH-HHHHhCCCCccchHHH------HHhh
Confidence 0 00112478999999999999999999998 5566644 32222111 1111
Q ss_pred HHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 511 LNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 511 ~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
.+.+..+|..+.+.|++.++|+.+++++.++++++++|+|++++|||||+||||+.+||+|+++|++|||++|++||+.
T Consensus 434 ~~~~~~~l~~~~~~L~~~~~~~~e~~~~~~~~~~~~~g~k~~~l~~plR~AltG~~~gP~l~~~~~lLGke~~l~Rl~~ 512 (513)
T PRK14895 434 ENCDKNLIKQIIENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKENILKRLKI 512 (513)
T ss_pred hhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHHhh
Confidence 2234455666667777667899999999999999999999999999999999999999999999999999999999973
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-118 Score=964.53 Aligned_cols=413 Identities=30% Similarity=0.518 Sum_probs=373.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+||| ||+||+|+++|++
T Consensus 10 G~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe---------~y~QSeR~~~Y~~ 80 (433)
T PRK12410 10 GDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK---------LVYQSENLKFHRQ 80 (433)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC---------CeehhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 5999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++++++.|+.+.+.|.+++|+|+||+++.+|+ +..|.++|||||+|++.+.|+|.|+|++
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~---~~~g~~~~iR~k~p~~~~~f~D~v~G~i 157 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV---LNCNKPFVVRLKKPNHTMSFTDAIKGEV 157 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH---HhcCCCeEEEEEcCCCceeeeeccceeE
Confidence 9999999999999999999999999888888888999999999999986 5679999999999988899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC-CcEEEecceecCCCccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP-PKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~-P~f~H~plil~~dg~KL 318 (605)
++++ ...+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++ |.|+|+|||+|.+|+||
T Consensus 158 ~~~~-~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g~KL 236 (433)
T PRK12410 158 SFEP-DEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKM 236 (433)
T ss_pred Eecc-ccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCCCee
Confidence 9985 556899999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+||++++||+. .+|+||++||++
T Consensus 237 SKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~-------~~e~~~~~eli~---------------------------- 281 (433)
T PRK12410 237 SKRDNASSVKWLLEQGFLPSAIANYLILLGNKT-------PKEIFTLEEAIE---------------------------- 281 (433)
T ss_pred ecccChhhHHHHHHCCCCHHHHHHHHHHhCCCC-------cccccCHHHHHH----------------------------
Confidence 999999999999999999999999999999764 279999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++|+++|++||.+||.|+|++||+.++.+ ++++.+.. ..+++.+++.++++|++++
T Consensus 282 ~F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~-------~l~~~~~~-------------~~~~~~~~~~l~~~r~~~l 341 (433)
T PRK12410 282 WFDIEKISKSPAKFDLKKLRFINREHLKMLDDE-------RLSKLLGF-------------KDKDLGGLAKLYLQEASTL 341 (433)
T ss_pred hCCHhhCCCccccCCHHHHHHHHHHHHHhCCHH-------HHHHHHhh-------------hhHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999987533 35555411 1257899999999999999
Q ss_pred HhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
+|+++. ..|||..+.+.+ .. +..+..+.+.+.. .+.| +++++++++++++.|+|+|++||||
T Consensus 342 ~d~~~~-~~~~f~~~~~~~--------~~----~~~~~~l~~~l~~---~~~~--~~~~~~~~~~~~~~g~k~~~~~~pl 403 (433)
T PRK12410 342 NELKEK-IDLIFSPKDINE--------EF----KEECKILKEALKS---MDFF--EDFEEFKKELMQKSGLKGKKFFKPL 403 (433)
T ss_pred HHHHHH-HHHHcCCCccch--------hh----HHHHHHHHHHHHc---CCcH--HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998 678876543221 01 1122333333333 3334 9999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHh
Q psy16872 559 RTSLSGLKQGPSVGEMMEIL 578 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lL 578 (605)
|+||||+.+||+|+++|++|
T Consensus 404 R~AltG~~~gP~l~~~l~ll 423 (433)
T PRK12410 404 RILLTGNEHGPELSDIYPYI 423 (433)
T ss_pred HHHHcCCCCCCCHHHHHHHH
Confidence 99999999999999999998
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-116 Score=964.76 Aligned_cols=455 Identities=37% Similarity=0.650 Sum_probs=412.5
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 12 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~--------~~~QS~r~~~y~~ 83 (470)
T TIGR00464 12 GYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEG--------PYYQSQRLDIYKK 83 (470)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCC--------eeehhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++++++|+++.+.|..|.|+|+||+++.+|+.++..+|.++|||||+|.. .+.|+|+|+|+
T Consensus 84 ~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~ 163 (470)
T TIGR00464 84 YAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGE 163 (470)
T ss_pred HHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecccce
Confidence 99999999999999999999999999888888899999999999999999888999999999999964 58999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+++++ ...+|+||+|+||+||||||+|||||+|||||||||+||+++||+|+++|++|||+.|.|+|+|+++|.+|+||
T Consensus 164 ~~~~~-~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g~kL 242 (470)
T TIGR00464 164 ITFQN-SELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDGKKL 242 (470)
T ss_pred EEecC-ccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCCccc
Confidence 99986 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|++|+++||.|+|+.||++++||+. ...+++++++++++
T Consensus 243 SKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~-----~~~~e~~~~~~~i~---------------------------- 289 (470)
T TIGR00464 243 SKRDGATSIMQFKEQGYLPEALINYLALLGWSP-----PDDQEFFSLEELIE---------------------------- 289 (470)
T ss_pred cccCCCccHHHHHHCCCCHHHHHHHHHHcCCCC-----CCccccCCHHHHHH----------------------------
Confidence 999999999999999999999999999999876 45789999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++++++++.||.+||.|||++||++++.+ ++++.+.+++.+.... ...+++|+.+++.++++|+.++
T Consensus 290 ~f~l~~~~~~~~~fd~~kL~~~N~~~l~~l~~~-------~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~l 360 (470)
T TIGR00464 290 IFSLNRVSKSPAKFDWKKLQWLNAHYIKELPDE-------ELFELLDPHLKSLVNT--DTLNREQLAELLLLFKERLKTL 360 (470)
T ss_pred hcCcccCCCCCCeecHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhccH
Confidence 999999999999999999999999999987533 4788888777654221 1234689999999999999999
Q ss_pred HhhhhhhhhccccCCCcCc-cCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEH-LSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~-~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+|+.+. ..|||.+|.... ...+ +...+....+|.++++.|+..++|+.++|++.+++++++.|+|++++|+|
T Consensus 361 ~d~~~~-~~~~f~~~~~~~~~~~~------~~~~e~~~~~L~~l~~~L~~~~~~~~e~i~~~l~~iak~~g~k~k~lf~p 433 (470)
T TIGR00464 361 KEIAEL-IRLFFEDKKEVDEDAFK------KHLKKNVKEVLEALKKKLQALEEWTADEVKSAIKQIAEELGLKGKKVFMP 433 (470)
T ss_pred HHHHHH-HHHHhCCCCccCHHHHH------HhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999997 677776653222 1111 11123455667777777776678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHH-HHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLR-DVLE 592 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~-~al~ 592 (605)
||+||||+.+||+|+++|++|||+++++||+ ++|+
T Consensus 434 LR~ALtG~~~GP~L~~~i~lLGke~~l~RL~~~~~~ 469 (470)
T TIGR00464 434 LRLALTGKGHGPDLAQILELIGKTESIKRLKAQFIA 469 (470)
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 5553
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-110 Score=908.29 Aligned_cols=449 Identities=35% Similarity=0.564 Sum_probs=396.1
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|++++|+++|+++|+||||+|||+ ||+||+|+++|++
T Consensus 20 G~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~--------~~~QS~r~~~Y~~ 91 (472)
T COG0008 20 GYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEG--------PYYQSERFDIYYE 91 (472)
T ss_pred CccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCc--------eeehhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCC-CCCCcCcCCCHHHHHHHHhcCCCceEEEEcC--CCccceecccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP-KYDNKCRNLTQEQIDEKLKENSKYCIRFKLT--NHTESWQDLVY 236 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~-~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~--~~~~~~~D~v~ 236 (605)
+|++||++|+||+||||++||+++|+.+.+.|..| .|++.|++|+.++.......|.++|||||+| .....|+|+|+
T Consensus 92 ~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~~~~~D~v~ 171 (472)
T COG0008 92 YAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPGPVFRDLVR 171 (472)
T ss_pred HHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCCCCcccccee
Confidence 99999999999999999999999999999988878 9999999999988766655688999999999 44458999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|+|.+++. ..+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|++.+|+
T Consensus 172 g~i~~~~~-~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g~ 249 (472)
T COG0008 172 GRIVFAPK-HPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGK 249 (472)
T ss_pred eeEecCcc-CCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCCC
Confidence 99999864 5688 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTF 396 (605)
Q Consensus 317 KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (605)
|||||++++++.+|+..||+|+||.||++++||++. ....++|+++++++
T Consensus 250 kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~----~~~~e~f~~~~~~~-------------------------- 299 (472)
T COG0008 250 KLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYP----PEAIEIFSLEEGIK-------------------------- 299 (472)
T ss_pred eecCccCccccchhhhcCCCcHHHHHHHHHhcCCCC----hhhHHHHHHHHHHh--------------------------
Confidence 999999999999999999999999999999999884 46789999999999
Q ss_pred cccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcccc
Q psy16872 397 FNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 397 ~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~ 476 (605)
+|+++.++++++.||.+||+|+|.+||+.. +.+ .+++.+.+++.+.... .. .++++..+++.+.++
T Consensus 300 --~fd~~~~~~~~~~fd~~kL~~~n~ry~~~~-p~e------~~~~~l~~~~~~~~~~-~~-~~~e~~~~~~~l~~~--- 365 (472)
T COG0008 300 --WFDLTIVSKSPAAFDRKKLDWLNPRYMRVD-PVE------VVIENLKPHLEEEGAT-LP-LNPEMGERVVPLTKE--- 365 (472)
T ss_pred --hhhhhhhhcccccccHHHhHhhhHHHHHhC-CHH------HHHHhhhhhhhhhccc-CC-CCHHHHhhhhhhccc---
Confidence 999999999999999999999999999984 333 4667776655532211 01 168899999999999
Q ss_pred chHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHH
Q psy16872 477 KLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMK 556 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~ 556 (605)
++.++... ..+||..+ .....+.+ ....+.+.+......+... .|+.+.+..++++.++..++|++++++
T Consensus 366 ~~~~i~~~-~~~~~~~~--~~~~~~~l------~~~~~~~~l~~~~~~l~~~-~~~~~~i~~wv~~~~~~~~vk~~~~~~ 435 (472)
T COG0008 366 TLIEIERL-DFFFFEDK--EEVRLKRL------ANVIVAEVLEKDAEGLITS-DWTKENIIHWVKAVARLFGVKGPKLFP 435 (472)
T ss_pred hHHHHhHH-HHHHhcch--HHHHHHhh------cchHHHHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHhCCCCcccch
Confidence 89999987 44555433 11101111 1112344455555555533 799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHH
Q psy16872 557 LLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592 (605)
Q Consensus 557 pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~ 592 (605)
|||+|+||..+||+|+++++++|++.+++||..++.
T Consensus 436 plr~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~~~ 471 (472)
T COG0008 436 PLRVALTGGYVEPELADTIELLGKEVQFERLGYALA 471 (472)
T ss_pred hhHHHhcCCccCCCHHHHHHhhchHHHHHHHHHHhh
Confidence 999999999999999999999999999999998864
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-93 Score=749.73 Aligned_cols=298 Identities=43% Similarity=0.773 Sum_probs=274.7
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++|+++.|+++|+||||+||+ +||+||+|+++|++
T Consensus 12 G~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~--------~~~~QS~r~~~Y~~ 83 (314)
T PF00749_consen 12 GYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDY--------GPYYQSDRLEIYQE 83 (314)
T ss_dssp SS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---ST--------CEEEGGGGHHHHHH
T ss_pred CCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCC--------eEEeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 47999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCC--CCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC-ccceecccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSG--LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVY 236 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~--~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~-~~~~~D~v~ 236 (605)
+|++|+++|+||+||||+++|++.|+.+.+.+ ..+.|++.||+++++|+.+.+..|.+++||||+|.. .+.|+|+|.
T Consensus 84 ~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~ 163 (314)
T PF00749_consen 84 AAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVR 163 (314)
T ss_dssp HHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTT
T ss_pred HHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcc
Confidence 99999999999999999999999998876665 678999999999999999999999999999999975 579999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|++.++.. ..+|+||.|+||+||||||+|||||+|||||||||+||++|||+|++||++|||++|.|+|+|+++|.+|+
T Consensus 164 g~i~~~~~-~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g~ 242 (314)
T PF00749_consen 164 GRIIFDPS-DLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDGK 242 (314)
T ss_dssp EEEEEEGG-GSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTSS
T ss_pred eeeeeccc-cCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCCc
Confidence 99998854 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCC--hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMS--VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQ 394 (605)
Q Consensus 317 KLSKR~g~~s--v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (605)
|||||+++.+ +..|++.|++|+|++|||+++||+. ....++++++++++
T Consensus 243 kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~-----~~~~e~~~~~~~~~------------------------ 293 (314)
T PF00749_consen 243 KLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSP-----EAIREFFSLDELIK------------------------ 293 (314)
T ss_dssp BSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-H-----CTHHCHHHHHHHHH------------------------
T ss_pred EechhhccccccccccccCCCCHHHHHHHHHHhcCCc-----chhhhhcCHHHHHH------------------------
Confidence 9999999988 8999999999999999999999886 46789999999999
Q ss_pred cccccccccccccCCCCCCchhhhh
Q psy16872 395 TFFNEFDLQLVNENSCKVDLTNLNE 419 (605)
Q Consensus 395 ~~~~~F~~~~i~~~~a~fd~~KL~~ 419 (605)
.||++.++++++.||.+||+|
T Consensus 294 ----~f~~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 294 ----QFDLSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp ----HC-GGGBHSSHEEHHHHHHHH
T ss_pred ----HhhHhhccCchHHhCHHHhCC
Confidence 999999999999999999999
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-90 Score=713.94 Aligned_cols=281 Identities=30% Similarity=0.488 Sum_probs=262.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 16 G~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~--------~~~QS~r~~~Y~~ 87 (299)
T PRK05710 16 GPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP--------VLYQSQRHDAYRA 87 (299)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCC--------ceEeeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||++||++.| +...+..+.|+|+||+++.++. .+++||||+|.+.+.|.|.++|.+
T Consensus 88 ~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~~~~~~-------~~~~iRlk~~~~~~~~~D~~~G~~ 158 (299)
T PRK05710 88 ALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDLLHGPR-------NPPAWRLRVPDAVIAFDDRLQGRQ 158 (299)
T ss_pred HHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccCCcccc-------CCceEEEEcCCCceEEEEecceeE
Confidence 9999999999999999999998877 3345566799999999997652 378999999977899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.+...+||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|+|+|.+|+|||
T Consensus 159 ~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g~kLS 238 (299)
T PRK05710 159 HQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKLS 238 (299)
T ss_pred eeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCCCccc
Confidence 88866577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH--HHHHHHhccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM--KDLVEKVCNNATYNRIKPTIKEFGIFWFQTFF 397 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~--eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (605)
||+++.+|.+ +|+.|+ +.||++++||+. ....+++++ +++++
T Consensus 239 Kr~~~~~i~~---~g~~p~-l~~~l~~lG~~~-----~~~~~~~~~~~~~~i~--------------------------- 282 (299)
T PRK05710 239 KQNGAPALDA---AGPLPV-LAAALRFLGQPP-----PAADASVEELLAQAVA--------------------------- 282 (299)
T ss_pred ccCCccchhh---cCcCHH-HHHHHHHcCCCC-----CccccccccCHHHHHH---------------------------
Confidence 9999999988 899999 999999999876 345566766 79999
Q ss_pred ccccccccccCCCCCCc
Q psy16872 398 NEFDLQLVNENSCKVDL 414 (605)
Q Consensus 398 ~~F~~~~i~~~~a~fd~ 414 (605)
.|+++++++++++|..
T Consensus 283 -~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 283 -HWDLTRLPRQAEINPA 298 (299)
T ss_pred -hCCHhhCCcCCccCCC
Confidence 9999999999998874
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-88 Score=693.10 Aligned_cols=262 Identities=32% Similarity=0.487 Sum_probs=243.8
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 11 G~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~--------~~~QS~r~~~Y~~ 82 (272)
T TIGR03838 11 GPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE--------VVYQSQRHALYQA 82 (272)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eeeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996 6899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++|+++.| .+..+.|+|.||+ +. ...+|++++||||+|.+.+.|+|+++|++
T Consensus 83 ~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~-~~-----~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~ 151 (272)
T TIGR03838 83 ALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRN-GL-----LGRPARPAAWRLRVPDGVIAFDDRLQGPQ 151 (272)
T ss_pred HHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhc-cc-----ccccCCCceEEEecCCCCceEEEeeeeEE
Confidence 9999999999999999999998765 3455789999998 43 23457889999999988899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.....+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|+|.+|+|||
T Consensus 152 ~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~kLS 231 (272)
T TIGR03838 152 QQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEKLS 231 (272)
T ss_pred EecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCCCeee
Confidence 88755667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHH
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli 369 (605)
||+++.+|++++ .++++.|+++++||+. +.+.++||++||+
T Consensus 232 KR~~~~~i~~~~----~~~~~~~~l~~lG~~~-----~~~~~~~~~~~~~ 272 (272)
T TIGR03838 232 KQNGAPALDLSH----PLPALLAALRFLGLPP-----PPELAAASPAELL 272 (272)
T ss_pred ccCCccchhcCC----cHHHHHHHHHHcCCCC-----CcccccCCHHHhC
Confidence 999999998873 5789999999999876 4577999999984
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-80 Score=679.28 Aligned_cols=297 Identities=22% Similarity=0.336 Sum_probs=270.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||++ ||+||+|+++|++
T Consensus 11 G~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~--------~~~qS~~~~~~~~ 82 (522)
T TIGR00440 11 GYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGK--------IRYSSDYFDELYR 82 (522)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCC--------ceEccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCC----CceEEEEcCCC--ccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENS----KYCIRFKLTNH--TES 230 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~--~~~ 230 (605)
+|++|+++|+||+|+||+|++++.|+.+ ..++|+++||++|++|+. ++|.+|. ++|||||+|.. ++.
T Consensus 83 ~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~ 158 (522)
T TIGR00440 83 YAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPV 158 (522)
T ss_pred HHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCce
Confidence 9999999999999999999999888543 247899999999999874 4676665 78999999854 689
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CC---cEEE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PP---KFAH 306 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P---~f~H 306 (605)
++|+|.|+|.+.++...|| |+.++||||||||||||+|||||||||+||++||+.|.||++++++. .| .|+|
T Consensus 159 ~rD~V~~Ri~~~~h~~~gd----k~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~r 234 (522)
T TIGR00440 159 MRDPVAYRIKFAPHHQTGT----KWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSR 234 (522)
T ss_pred EeeeeEEEEecCCCCCCCC----CeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEE
Confidence 9999999999887777677 55569999999999999999999999999999999999999999997 68 7999
Q ss_pred ecceecCCCccccccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 307 LPLLLNLNGSKLSKRQGDM----------------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 307 ~plil~~dg~KLSKR~g~~----------------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.+|+|||||++.. ||.+||++||+|+||+||++++|||.+ ....++++++++++
T Consensus 235 ----ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~----~~~~e~~~l~~~~r 306 (522)
T TIGR00440 235 ----LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQ----DNNIEVVRLESCIR 306 (522)
T ss_pred ----ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCC----CCceehhhHHHHHH
Confidence 788999999999864 899999999999999999999999873 23358999999999
Q ss_pred HhcccccccccccccccccccccccccccccccccccCCCCCCchhh--hhhhHHH-HHhh
Q psy16872 371 KVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNL--NEFNRAE-IRRV 428 (605)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL--~~~N~~~-i~~~ 428 (605)
.|+..++++++|+||+.|| .|+|..+ +.++
T Consensus 307 ----------------------------~f~~~~~~r~~av~d~~kl~i~~~~~~~~~~~~ 339 (522)
T TIGR00440 307 ----------------------------EDLNENAPRAMAVIDPVEVVIENLSDEYELATI 339 (522)
T ss_pred ----------------------------HhhhhcCcccccccccceEEEecCCCCceEEec
Confidence 9999999999999999999 8888776 5543
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=657.91 Aligned_cols=328 Identities=19% Similarity=0.266 Sum_probs=283.4
Q ss_pred hhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHH
Q psy16872 51 IYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLK 129 (605)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~ 129 (605)
|++++.+++.++.+. .+++|| |+|||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+
T Consensus 14 ~~~~~~~dl~~~~~~----~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~ 89 (554)
T PRK05347 14 IRQIIDEDLASGKHT----RVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVR 89 (554)
T ss_pred HHHHHHhHHhcCCcC----ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHH
Confidence 678889999999774 577888 599999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
||||+||++ ||+||+|+++|+++|++|+++|+||+||||+|++++.|+.+.+ ++++++||+++.+|+.
T Consensus 90 wLGi~~d~~--------~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~----~g~~~~~R~~s~eenl 157 (554)
T PRK05347 90 WLGFDWSGE--------LRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTE----PGKNSPYRDRSVEENL 157 (554)
T ss_pred HcCCCCCCC--------ceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhh----cCCCCCccCCCHHHHH
Confidence 999999986 6999999999999999999999999999999999999987654 4568999999999975
Q ss_pred H---HHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcC
Q psy16872 210 E---KLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRG 280 (605)
Q Consensus 210 ~---~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG 280 (605)
+ +|.+|. ++|||+|++. .+..++|+|..++.+.+|...||.+++ |||||||||||||+|||||||||
T Consensus 158 ~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~i----yPtYdfA~~vdD~l~gITHvlRg 233 (554)
T PRK05347 158 DLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCI----YPMYDFAHCISDAIEGITHSLCT 233 (554)
T ss_pred HHHHHHHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceee----ecCcCccceeeccccCCceEEec
Confidence 4 477775 7899999974 467788999888876666667885554 99999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHcCCC-CC---cEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHH
Q psy16872 281 VEWQISTTKHILIYKAFGWT-PP---KFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNAL 340 (605)
Q Consensus 281 ~d~l~stpkqi~ly~alG~~-~P---~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl 340 (605)
+||++|||+|.|||+||||. .| .|+| +|.+|+|||||++. .||.+||++||+||||
T Consensus 234 ~E~~~~t~~~~~i~~alg~~~~P~~~~F~r----ln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi 309 (554)
T PRK05347 234 LEFEDHRPLYDWVLDNLPIPPHPRQYEFSR----LNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESI 309 (554)
T ss_pred cccccChHHHHHHHHHcCCCCCCceEEEEE----ECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHH
Confidence 99999999999999999964 78 7999 57899999999954 3899999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccc------ccccccccccccccccccccccccccccccc
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVN 406 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~ 406 (605)
+||++++|||.+ ...-+.-.++...+++|+. ||.+||||+|+|++....+++...+++++..
T Consensus 310 ~nf~~~lG~s~~----~~~i~~~~L~~~nRk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~~~~ 377 (554)
T PRK05347 310 REFCERIGVTKQ----DSVIDMSMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPEDPE 377 (554)
T ss_pred HHHHHHhCCCCC----CCeecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCCCCc
Confidence 999999998873 1222333455555666765 7999999999999876666666666665443
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=649.00 Aligned_cols=325 Identities=22% Similarity=0.281 Sum_probs=263.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+||||||||||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +|+||+|+++
T Consensus 19 sPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~---------~~~qSdr~~~ 89 (523)
T PLN03233 19 EPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS---------VSFTSDYFEP 89 (523)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC---------CccccccHHH
Confidence 3339999999999999999999999999999999999999999999999999999999996 3899999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH---HHh----cCCCceEEEEcCC--C
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE---KLK----ENSKYCIRFKLTN--H 227 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~---~~~----~g~~~~iR~k~~~--~ 227 (605)
|+++|++|+++|+||+||||+|++++.|+. .++++||+++.+|..+ +|. .|.++|+|+|++. .
T Consensus 90 y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~ 161 (523)
T PLN03233 90 IRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSD 161 (523)
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCC
Confidence 999999999999999999999999877643 3678899999998643 343 3457899999875 3
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~ 307 (605)
+..++|+|.+++....+...||.+ +|+||||||||||||+|||||||||+||++|||+|++||+||||+.|.| |.
T Consensus 162 n~~~~D~Vi~R~d~~~h~~~Gd~~----~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~ 236 (523)
T PLN03233 162 NGTLRDPVLFRQNTTPHHRSGTAY----KAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRI-HA 236 (523)
T ss_pred CCCCcCCEEEEEcCCcccccCCcc----cceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCee-ee
Confidence 566777777777655556667744 6799999999999999999999999999999999999999999999998 55
Q ss_pred cceecCCCccccccC-------CCC---------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHH
Q psy16872 308 PLLLNLNGSKLSKRQ-------GDM---------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371 (605)
Q Consensus 308 plil~~dg~KLSKR~-------g~~---------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~ 371 (605)
|..+|.+|+|||||+ |.+ ||++||++||+||||+||++.+||+.+ ...-+.-.++..+++
T Consensus 237 f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~----~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 237 FARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRR----VVNLDWAKFWAENKK 312 (523)
T ss_pred eEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCC----CceecHHHHHHHHHH
Confidence 888999999999996 544 799999999999999999999998763 122233345556667
Q ss_pred hccc------ccc--ccccccccccccccccc-ccccccccccccCCCCCCchhhhhhhHHHHHh
Q psy16872 372 VCNN------ATY--NRIKPTIKEFGIFWFQT-FFNEFDLQLVNENSCKVDLTNLNEFNRAEIRR 427 (605)
Q Consensus 372 ~~~~------~~~--~~~~~~~~~~~~~~~~~-~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~ 427 (605)
+|+. ||. +||||+|+|+|....+. +...+.+++...+.-.+-+.+-.++-+.-+++
T Consensus 313 ~ld~~a~R~m~V~~~~pv~v~i~n~~~~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~~ 377 (523)
T PLN03233 313 EIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTED 377 (523)
T ss_pred HhcccCCceEEEccCCcEEEEecCCCCccceeccccccCCCCCCCceEEEEECCcEEEEHhHHhh
Confidence 7766 576 69999999998654322 23345444433333333333334444444443
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-76 Score=664.26 Aligned_cols=328 Identities=20% Similarity=0.298 Sum_probs=273.5
Q ss_pred ceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
++|||| +||||||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +|+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~---------~~~ 335 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK---------ITY 335 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC---------ccc
Confidence 445663 6669999999999999999999999999999999999999999999999999999999985 589
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcC----CCceEEE
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKEN----SKYCIRF 222 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g----~~~~iR~ 222 (605)
||+|++.++++|.+||++|+||+||||+++++++|..+ .+++||+++.+|. .+.|..| .++|+|+
T Consensus 336 qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~--------~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~ 407 (788)
T PLN02859 336 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKK--------MNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRM 407 (788)
T ss_pred ccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhh--------ccCCCCCCChHHhhhhhHHHHhchhccCCeEEEE
Confidence 99999766679999999999999999999999888643 2567999998875 3444332 2589999
Q ss_pred EcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 223 KLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 223 k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
|+|. +++.|+|+|.|+|.+.++...+|.+++ ||||||||+||||+|||||||||+||++|||+|.|||+||||.
T Consensus 408 Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~ 483 (788)
T PLN02859 408 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLY 483 (788)
T ss_pred eccCCCCCceeeeceeEEEeccCCCccCCCeEE----EecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCC
Confidence 9984 578999999999998877666666655 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCC
Q psy16872 301 PPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFS 364 (605)
Q Consensus 301 ~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s 364 (605)
.|.|.|+| ++|.+|+|||||++. +||.+||++||+|+||+||++++|||. .+.++++
T Consensus 484 ~P~~~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~------~~~e~i~ 556 (788)
T PLN02859 484 QPYVWEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITR------SDNSLIR 556 (788)
T ss_pred CCcEEeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCC------CCCceec
Confidence 99999999 699999999999964 489999999999999999999999886 3457899
Q ss_pred HHHHHHH---hccc------ccccccccccccccccccccccc---cccccccccCCCCCCchhhhhhhHHHHH
Q psy16872 365 MKDLVEK---VCNN------ATYNRIKPTIKEFGIFWFQTFFN---EFDLQLVNENSCKVDLTNLNEFNRAEIR 426 (605)
Q Consensus 365 ~eeli~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~F~~~~i~~~~a~fd~~KL~~~N~~~i~ 426 (605)
+++|-.. .|+. |+.+|+||+|+|+|....+++.. +.++++-+.+.-.+-+.+-.|+-+.-++
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~ 630 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFR 630 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhh
Confidence 9998442 2222 69999999999999887777644 3332222222223444444555555544
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=592.70 Aligned_cols=219 Identities=42% Similarity=0.754 Sum_probs=213.4
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++ ||+||+|+++|++
T Consensus 12 G~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~--------~~~QS~r~~~y~~ 83 (230)
T cd00418 12 GYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEG--------PYRQSDRFDLYRA 83 (230)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eeehhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|
T Consensus 84 ~~~~L~~~g----------------------------------------------------------------------- 92 (230)
T cd00418 84 YAEELIKKG----------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHcC-----------------------------------------------------------------------
Confidence 999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
|+||||||+|||||+|||||||||+||++|||+|++||++|||++|.|+|+|++++.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+++.+|++||++|+.|+||+||++.+||+. ..+.+++++++|++ .
T Consensus 156 Kr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~-----~~~~~~~~~~~li~----------------------------~ 202 (230)
T cd00418 156 KRKLNTTLRALRRRGYLPEALRNYLALIGWSK-----PDGHELFTLEEMIA----------------------------A 202 (230)
T ss_pred CcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCC-----CCCccccCHHHHHH----------------------------h
Confidence 99999999999999999999999999999876 45679999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHHh
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIRR 427 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~~ 427 (605)
|++++++++|++||.+||.|+|++||++
T Consensus 203 f~~~~~~~~~~~~d~~kL~~~N~~~l~~ 230 (230)
T cd00418 203 FSVERVNSADATFDWAKLEWLNREYIRE 230 (230)
T ss_pred cCHhhCCCCCcccCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999973
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-76 Score=648.89 Aligned_cols=330 Identities=20% Similarity=0.302 Sum_probs=281.4
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+++|| |+||||||||||||||+||++||++||+|||||||||++|+.+||+++|++||+||||+||++ ||+
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~--------~~~ 124 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVG--------PTY 124 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCc--------eee
Confidence 56777 488899999999999999999999999999999999999999999999999999999999986 689
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEEE
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIRF 222 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR~ 222 (605)
||+|+++|+++|++|+++|+||.|+||+|++++.|. .+|+++||+++++|.. +.|.+ +..+++|+
T Consensus 125 QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~ 196 (601)
T PTZ00402 125 SSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRA 196 (601)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEE
Confidence 999999999999999999999999999999865542 3589999999998864 33433 34689999
Q ss_pred EcCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 223 KLTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 223 k~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
|++.. +..++|+|.+++.+..+...|| ++||+||||||||||||+|||||||||+||++|||+|++||++|||+
T Consensus 197 kid~~~~n~~~rD~Vl~R~~~~~h~rtGd----k~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~ 272 (601)
T PTZ00402 197 KISVDNENKAMRDPVIYRVNLTPHARQGT----KYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIR 272 (601)
T ss_pred ecccCCCCCCccCCEEEEEcCCcccccCC----CCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCC
Confidence 98743 5689999999998777777888 68999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCC
Q psy16872 301 PPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFS 364 (605)
Q Consensus 301 ~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s 364 (605)
+|.|+|+|+ +|.+|+|||||++. +||.++|++||.|+||++|+..+|++. ....|+
T Consensus 273 ~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk-------~~~~~d 344 (601)
T PTZ00402 273 KPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSK-------TVNFME 344 (601)
T ss_pred CceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCC-------CCcccC
Confidence 999999996 89999999999875 478999999999999999999999765 334555
Q ss_pred HHHH---HHHhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhh
Q psy16872 365 MKDL---VEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV 428 (605)
Q Consensus 365 ~eel---i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~ 428 (605)
++.| .++.|+. ||.+|+||+|+|++....+++....++++-..+.-.+-+.+-.|+-+.-++++
T Consensus 345 ~~~L~~~nr~~l~~~a~R~maV~~p~kv~i~~~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~l 417 (601)
T PTZ00402 345 WSKLWYFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVALL 417 (601)
T ss_pred HHHHHHHHHHHHhhcCCceEEEcCCCEEEEEECCCCcceEeeccCCCCCcccCceEEEECCeEEEEhhhHhhc
Confidence 5544 4455544 79999999999999877767766777665554444555555556666555544
|
|
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-74 Score=651.59 Aligned_cols=349 Identities=21% Similarity=0.275 Sum_probs=291.2
Q ss_pred hhhhhhhhhhhhcCcccCCCCceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHH
Q psy16872 50 MIYNRCEKLWITEGLRSSIPLKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDL 128 (605)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L 128 (605)
-|++++.+++..|.+. .++|||| +|||||||||||+||+||++||++||+|||||||||++|+.++|+++|+++|
T Consensus 15 f~~~~~~~~l~~g~~~----~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl 90 (771)
T PRK14703 15 FITEIIEEDLEAGRYP----RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDV 90 (771)
T ss_pred HHHHHHHHHHhcCCCC----ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHH
Confidence 3677788888888664 5788995 9999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI 208 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~ 208 (605)
+||||+||++ ||+||+|+++|+++|++|+++|+||+|+||++++++.|..+.. ++|+++||+++.+|.
T Consensus 91 ~wLG~~wd~~--------~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~----~g~~~~~R~~s~ee~ 158 (771)
T PRK14703 91 RWLGFDWGEH--------LYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTE----PGTPSPYRDRSVEEN 158 (771)
T ss_pred HHcCCCCCCC--------ceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhh----cCCCCCCCCCCHHHH
Confidence 9999999986 6999999999999999999999999999999999988876542 578899999999987
Q ss_pred H---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEc
Q psy16872 209 D---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLR 279 (605)
Q Consensus 209 ~---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIR 279 (605)
. ++|.+|. ++|+|+|++. .+..++|+|..++...++...|| ++++||||||||+||||+||||||||
T Consensus 159 l~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd----~~~i~PtYdfa~~vdD~l~gITHvlR 234 (771)
T PRK14703 159 LDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGD----EWCIYPMYDFAHPLEDAIEGVTHSIC 234 (771)
T ss_pred HHHHHHHhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCC----CCCcCCCccccceeeccccCCcEEEe
Confidence 5 4788887 7899999874 35678899988887665666778 46689999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCC-C-C---cEEEecceecCCCccccccC-------CCC---------ChHHHHHcCCCHH
Q psy16872 280 GVEWQISTTKHILIYKAFGWT-P-P---KFAHLPLLLNLNGSKLSKRQ-------GDM---------SVEAIRNSEFLPN 338 (605)
Q Consensus 280 G~d~l~stpkqi~ly~alG~~-~-P---~f~H~plil~~dg~KLSKR~-------g~~---------sv~~~r~~G~~Pe 338 (605)
|+||++|||+|.|||++||+. + | .|+|+|+ +|+|||||+ |.+ ||.+||++||+|+
T Consensus 235 g~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~pe 310 (771)
T PRK14703 235 TLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPE 310 (771)
T ss_pred cHhhhhccHHHHHHHHHhCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHH
Confidence 999999999999999999644 3 5 7999776 789999998 443 7999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccc------ccccccccccccccccccccccccccccc-cccCCCC
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQL-VNENSCK 411 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~-i~~~~a~ 411 (605)
||+||++.+||+.+ ....+.-.++..++++|+. |+.+|+||+|+|++....+++...+.+++ -..+.-.
T Consensus 311 Ai~~f~~~lG~s~~----~~~i~~~~L~~~~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~~~~~~G~r~ 386 (771)
T PRK14703 311 AIRDFADQIGVAKT----NSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPHDVPKEGSRK 386 (771)
T ss_pred HHHHHHHHhCCCcc----CceecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCCCCccCceEE
Confidence 99999999998873 2233444556666677765 79999999999999777777766776664 2222222
Q ss_pred CCchhhhhhhHHHHH
Q psy16872 412 VDLTNLNEFNRAEIR 426 (605)
Q Consensus 412 fd~~KL~~~N~~~i~ 426 (605)
+-+.+-.|+-+.-++
T Consensus 387 v~~~~~iyIe~~D~~ 401 (771)
T PRK14703 387 VPFTRELYIERDDFS 401 (771)
T ss_pred EEEcCeEEEEhhHhh
Confidence 333344444444444
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=573.52 Aligned_cols=227 Identities=54% Similarity=0.937 Sum_probs=222.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|+||+||++||++||+|||||||||++|+.+++++.|+++|+||||+||+++..+|+||||+||+|+++|++
T Consensus 12 G~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~ 91 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRK 91 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|
T Consensus 92 ~~~~L~~~g----------------------------------------------------------------------- 100 (239)
T cd00808 92 YAEKLLEKG----------------------------------------------------------------------- 100 (239)
T ss_pred HHHHHHHcC-----------------------------------------------------------------------
Confidence 999999988
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
||+||||||+||||++|||||||||+||+++|++|++++++|||+.|.|.|+|+++|.+|.|||
T Consensus 101 ----------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g~KLS 164 (239)
T cd00808 101 ----------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGKKLS 164 (239)
T ss_pred ----------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeeccccCCCCCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+.+|++||++|+.|+||++|++.+||+. .++.++++++||++ +
T Consensus 165 KR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~-----~~~~~~~~~~~l~~----------------------------~ 211 (239)
T cd00808 165 KRKGDTSISDYREEGYLPEALLNYLALLGWSP-----PDGEEFFTLEELIE----------------------------L 211 (239)
T ss_pred CCCCCccHHHHHHCCCCHHHHHHHHHHcCCCC-----CCCCCcCCHHHHHh----------------------------c
Confidence 99999999999999999999999999999876 45678999999999 9
Q ss_pred ccccccccCCCCCCchhhhhhhHHHHH
Q psy16872 400 FDLQLVNENSCKVDLTNLNEFNRAEIR 426 (605)
Q Consensus 400 F~~~~i~~~~a~fd~~KL~~~N~~~i~ 426 (605)
|++++++++|+.||.+||.|+|++||+
T Consensus 212 f~~~~~~~~~~~~d~~kL~~~n~~~l~ 238 (239)
T cd00808 212 FDLERVSKSPAIFDPEKLDWLNGQYIR 238 (239)
T ss_pred CCHhhCCcCcCcCCHHHHHHHHHHHhh
Confidence 999999999999999999999999997
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=621.19 Aligned_cols=323 Identities=29% Similarity=0.409 Sum_probs=263.1
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCC--CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQ--TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~--~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
+++|| |+|||+||||||||||+||++||++||+|||||||||+ +|+.+++++.|++||+||||+||+ +
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~---------~ 172 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE---------V 172 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC---------c
Confidence 44555 36669999999999999999999999999999999999 999999999999999999999997 4
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCC----CceE
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENS----KYCI 220 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~----~~~i 220 (605)
|+||+|+++|+++|++|+++|+||+||||++++++.|. .+++++||+++++|.. ++|.+|. ++|+
T Consensus 173 ~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vl 244 (567)
T PRK04156 173 VIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVV 244 (567)
T ss_pred cCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEE
Confidence 89999999999999999999999999999999876652 2478999999998864 5566665 6899
Q ss_pred EEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC
Q psy16872 221 RFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG 298 (605)
Q Consensus 221 R~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG 298 (605)
|+|++. .+..++|.|.+++....+...||-++ |+||||||++||||+|||||||||.||++|||+|.+||++||
T Consensus 245 R~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~----i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg 320 (567)
T PRK04156 245 RVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYR----VWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG 320 (567)
T ss_pred EEECcccCCCCCccccEEEEEcCCCccccCCCeE----EEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC
Confidence 999985 36678888888875443444555333 389999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcccc
Q psy16872 299 WTPPKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQL 362 (605)
Q Consensus 299 ~~~P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~ 362 (605)
|+.|.|+|+|++ +.+|+|||||++. .||..||++||.|+||+||++.+||+. +...
T Consensus 321 ~~~P~~~H~~~L-~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~-------~~~~ 392 (567)
T PRK04156 321 WEYPETIHYGRL-KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKE-------TDAT 392 (567)
T ss_pred CCCceEEEccee-cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCC-------CCcc
Confidence 999999999984 6799999999932 589999999999999999999999765 3456
Q ss_pred CCHHHHHH---Hhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHH
Q psy16872 363 FSMKDLVE---KVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425 (605)
Q Consensus 363 ~s~eeli~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i 425 (605)
||++.|-. +.++. +|.+|+||+|+|.+ .+++...+.+++-..+.-.+-+.+-.|+.+.-+
T Consensus 393 ~~~~~L~~~nr~~ld~~a~R~~~V~~pv~v~i~~~~---~~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~ 461 (567)
T PRK04156 393 ISWENLYAINRKLIDPIANRYFFVRDPVELEIEGAE---PLEAKIPLHPDRPERGEREIPVGGKVYVSSDDL 461 (567)
T ss_pred cCHHHHHHHHHHHHhccCCceEEECCceEEEEcCCC---ceEEEcCCCCCCCCCceEEEEECCeEEEEHHHH
Confidence 77666554 44543 79999999999965 233334555544433333333333334444333
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=620.54 Aligned_cols=296 Identities=29% Similarity=0.443 Sum_probs=259.9
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+||||| +|||+|||||||+||+||++||++||+|||||||||++|+.++|++.|+++|+|||+.||+. |
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~---------~ 163 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEV---------V 163 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCcc---------c
Confidence 3567774 88899999999999999999999999999999999999999999999999999999999974 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+||+|++.|+++|++|+++|+||+|+||++++++.|. .+|+++||+++.+|.. ++|.+ |.++|||
T Consensus 164 ~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR 235 (560)
T TIGR00463 164 YQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVR 235 (560)
T ss_pred cccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEE
Confidence 9999999999999999999999999999999987663 2489999999988753 45655 4678999
Q ss_pred EEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++. .+..++|+|.+++....+...||.++ ++||||||||||||+|||||||||.||++||++|+++|++|||
T Consensus 236 ~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~----~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~ 311 (560)
T TIGR00463 236 AKTDYKHKNPAIRDWVIFRINKTPHPRTGDKYK----VYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW 311 (560)
T ss_pred EECCCcCCCccccCcEEEEecCCCccccCCEEE----EEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCC
Confidence 99975 46789999999998766777899887 5999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccC
Q psy16872 300 TPPKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLF 363 (605)
Q Consensus 300 ~~P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~ 363 (605)
.+|.|.|+|++.+.+|.|||||+. ..||+.||++|+.|+||+||++.+|||.+ ...-+.-
T Consensus 312 ~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~----~~~i~~~ 387 (560)
T TIGR00463 312 ELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRN----DVNLSWK 387 (560)
T ss_pred CCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCC----CceeeHH
Confidence 999999999999999999998762 14899999999999999999999998763 1122333
Q ss_pred CHHHHHHHhccc------ccccccccccccccc
Q psy16872 364 SMKDLVEKVCNN------ATYNRIKPTIKEFGI 390 (605)
Q Consensus 364 s~eeli~~~~~~------~~~~~~~~~~~~~~~ 390 (605)
.++...++.++. ++.+|+||+|+|++.
T Consensus 388 ~l~~~nr~~id~~a~R~~~V~~p~~v~i~~~~~ 420 (560)
T TIGR00463 388 NIYAFNKKIIDPIARRYFFIWNPVKIEIEGAPE 420 (560)
T ss_pred HHHHHHHHHhCcCCCceEEEcCCcEEEEecCCC
Confidence 445555566655 799999999999873
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=610.61 Aligned_cols=293 Identities=20% Similarity=0.310 Sum_probs=257.0
Q ss_pred eeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 72 LKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 72 v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
++|| |+|||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||++ ++|
T Consensus 53 ~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~---------~~q 123 (574)
T PTZ00437 53 YFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWV---------TFS 123 (574)
T ss_pred EEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC---------CcC
Confidence 3444 255599999999999999999999999999999999999999999999999999999999985 589
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcC----CCceEEEE
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKEN----SKYCIRFK 223 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g----~~~~iR~k 223 (605)
|+|++.|+++|++|+++|+||+||||+++++++|.++ .+++||+++.+|. .++|.+| ..+|||+|
T Consensus 124 S~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~--------~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vlR~K 195 (574)
T PTZ00437 124 SDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQR--------EDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVK 195 (574)
T ss_pred chhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcc--------cCCccccCCHHHHHHHHHHHhhcccccCCeEEEEe
Confidence 9999999999999999999999999999999888542 2689999999985 4566555 35699999
Q ss_pred cCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC
Q psy16872 224 LTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP 301 (605)
Q Consensus 224 ~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~ 301 (605)
+|.. ++.++|+|.|+|.+.++...||.+ +|||||||||+||||+||||||||+.||..+++.|.||+++|||..
T Consensus 196 ~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~ 271 (574)
T PTZ00437 196 ADMKSDNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWR 271 (574)
T ss_pred CcCCCCCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcc
Confidence 9954 789999999999998888889966 6699999999999999999999999999999999999999999999
Q ss_pred CcEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 302 PKFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 302 P~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
|...|.|- +|.+|+|||||++. .||.+||++||+||||+||++.+|||.+ ...-+.-.+
T Consensus 272 p~~~ef~r-ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~----~~~i~~~~L 346 (574)
T PTZ00437 272 PHVWEFSR-LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRS----MNVIQISML 346 (574)
T ss_pred cceEeeee-ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCcc----ceEeeHHHH
Confidence 98888886 99999999999876 5899999999999999999999998763 112222334
Q ss_pred HHHHHHhccc------ccccccccccccccc
Q psy16872 366 KDLVEKVCNN------ATYNRIKPTIKEFGI 390 (605)
Q Consensus 366 eeli~~~~~~------~~~~~~~~~~~~~~~ 390 (605)
+..++++|+. ||.+||||+|+|++.
T Consensus 347 e~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~ 377 (574)
T PTZ00437 347 ENTLREDLDERCERRLMVIDPIKVVVDNWKG 377 (574)
T ss_pred HHHHHHHhcccCccceEEccceEEEEecCCC
Confidence 4455566654 799999999999873
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=633.99 Aligned_cols=289 Identities=25% Similarity=0.363 Sum_probs=253.3
Q ss_pred CceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.++||| |+||||||||||||||+||++||++||+|||||||||++|+.++|++.|++||+|||++||++ |
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~---------~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAV---------T 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCc---------c
Confidence 456888 499999999999999999999999999999999999999999999999999999999999974 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+||+|+++|+++|++||++|+||+|+|+.+++.+.|. .+|+++||+++.+|+. ++|.+ |.++|+|
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR 355 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVR 355 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEE
Confidence 9999999999999999999999999999988765542 1699999999999864 45544 4588999
Q ss_pred EEcC--CCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLT--NHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~--~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++ ..+..++|+|.+++....+...||++ +|+||||||||||||+|||||||||+||++|||+|++||++|||
T Consensus 356 ~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~----~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~ 431 (722)
T PLN02907 356 GKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY----KVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGL 431 (722)
T ss_pred EEcccCCCCCCcccCEEEEecCCcccccCCcc----ceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCC
Confidence 9998 34678999999999876777889965 88999999999999999999999999999999999999999999
Q ss_pred CCC---cEEEecceecCCCccccccC-------CC---------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPP---KFAHLPLLLNLNGSKLSKRQ-------GD---------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P---~f~H~plil~~dg~KLSKR~-------g~---------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
+.| .|+| +|.+|+|||||+ |. +|++++|++||+|+||++|+..+|||. +.
T Consensus 432 ~~p~~~~f~~----l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~-------~~ 500 (722)
T PLN02907 432 RKVHIWEFSR----LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASK-------NL 500 (722)
T ss_pred CCCeeEEEEE----EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCc-------CC
Confidence 987 5777 789999999998 43 379999999999999999999999876 23
Q ss_pred ccCCHHHH---HHHhccc------ccccc--cccccccccc
Q psy16872 361 QLFSMKDL---VEKVCNN------ATYNR--IKPTIKEFGI 390 (605)
Q Consensus 361 e~~s~eel---i~~~~~~------~~~~~--~~~~~~~~~~ 390 (605)
..++++.| .+..++. ++.+| |+++|+|++.
T Consensus 501 ~~~~~~~l~~~nr~~id~~a~R~~~v~~p~~v~~~i~~~~~ 541 (722)
T PLN02907 501 NLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTLTDGPE 541 (722)
T ss_pred ccccHHHHHHHHHHHhccCCCceeEEecCCEEEEEEcCCCC
Confidence 45555544 4444443 79999 8889999875
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=522.38 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=186.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||+ ||+||+|+++|++
T Consensus 12 G~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~---------~~~QS~r~~~Y~~ 82 (238)
T cd00807 12 GYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK---------VTYASDYFDQLYE 82 (238)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC---------ceecccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999994 5899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+ .|+ .|
T Consensus 83 ~~~~L~~~g~aY~--------------------------~~~------------~~------------------------ 100 (238)
T cd00807 83 YAEQLIKKGKAYV--------------------------HHR------------TG------------------------ 100 (238)
T ss_pred HHHHHHHcCCeec--------------------------CCC------------CC------------------------
Confidence 9999999999998 011 00
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCc---EEEecceecCCCc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK---FAHLPLLLNLNGS 316 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~---f~H~plil~~dg~ 316 (605)
+++++ +||||||||||||+|||||||||+||++|||+|++||++|||++|. |+| +|.+|+
T Consensus 101 --------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~h----ln~~g~ 163 (238)
T cd00807 101 --------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSR----LNLTYT 163 (238)
T ss_pred --------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEE----ECCCCC
Confidence 13333 6999999999999999999999999999999999999999999995 777 499999
Q ss_pred cccccCCCC----------------ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccc
Q psy16872 317 KLSKRQGDM----------------SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380 (605)
Q Consensus 317 KLSKR~g~~----------------sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~ 380 (605)
|||||+++. ++..|+++|+.||||+||++++|||.
T Consensus 164 kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~----------------------------- 214 (238)
T cd00807 164 VMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSK----------------------------- 214 (238)
T ss_pred CccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCC-----------------------------
Confidence 999999642 58999999999999999999999643
Q ss_pred cccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhh
Q psy16872 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRV 428 (605)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~ 428 (605)
+++.||.+||.|+|++||...
T Consensus 215 ---------------------------~~~~~~~~~l~~~nr~~id~~ 235 (238)
T cd00807 215 ---------------------------ADSTIDWDKLEACVRKDLNPT 235 (238)
T ss_pred ---------------------------CCcccCHHHHHHHHHHHhccC
Confidence 478899999999999999754
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-64 Score=502.55 Aligned_cols=187 Identities=37% Similarity=0.575 Sum_probs=173.1
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCC--CcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTR--FVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALY 157 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R--~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y 157 (605)
|+||||||||||+||++||++||+|+|||||||++| +.+++++.|+++|+||||+||+ +|+||+|+++|
T Consensus 12 G~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~---------~~~qS~r~~~y 82 (240)
T cd09287 12 GPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE---------VVIASDRIELY 82 (240)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC---------ccchhccHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999996 48999999999
Q ss_pred HHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccc
Q psy16872 158 QKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYG 237 (605)
Q Consensus 158 ~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G 237 (605)
++++++|+++|+||+ .
T Consensus 83 ~~~~~~Li~~G~aY~---------------------------------------------------~------------- 98 (240)
T cd09287 83 YEYARKLIEMGGAYV---------------------------------------------------H------------- 98 (240)
T ss_pred HHHHHHHHHcCCccc---------------------------------------------------C-------------
Confidence 999999999999997 0
Q ss_pred eeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcc
Q psy16872 238 DISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317 (605)
Q Consensus 238 ~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~K 317 (605)
....+|+++ +||||||+||||++|||||||||+||++|||+|++||++|||+.|.|+|+|++.+ +|+|
T Consensus 99 ------~~~~~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~~~k 166 (240)
T cd09287 99 ------PRTGSKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-EGGK 166 (240)
T ss_pred ------cccCCcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-CCCe
Confidence 000146665 5999999999999999999999999999999999999999999999999999765 5799
Q ss_pred ccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCC
Q psy16872 318 LSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGF 351 (605)
Q Consensus 318 LSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~ 351 (605)
||||+++ +++..||++||.|+||+||++.+||+.
T Consensus 167 LSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~ 216 (240)
T cd09287 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQ 216 (240)
T ss_pred eccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 9999942 579999999999999999999999765
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=416.14 Aligned_cols=328 Identities=22% Similarity=0.314 Sum_probs=276.1
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.++|||| +|||+||||||.+.-+||.|||.+||.+.||+|||+|+.+.++|.++|.++.+|||.++=.. .
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kv---------T 318 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKV---------T 318 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceee---------e
Confidence 4689997 99999999999999999999999999999999999999999999999999999999986443 5
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH---HHHHhcCC----CceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI---DEKLKENS----KYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~---~~~~~~g~----~~~iR 221 (605)
+.|++++..++.|.+||.+|+||.|.|+.+||.+.| |...+ .+++|+.+.||. .+-|+.|. ..++|
T Consensus 319 ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~r------g~~~~-~spwRdRPieEsL~lF~~Mr~Gk~~eGeAtLR 391 (764)
T KOG1148|consen 319 YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERR------GFNER-LSPWRDRPIEESLRLFEDMRDGKYEEGEATLR 391 (764)
T ss_pred cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhc------CCCCC-CCccccCcHHHHHHHHHHHhcCCcCcChhhee
Confidence 899999999999999999999999999999997655 33333 567899999986 45676663 56999
Q ss_pred EEcC--CCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLT--NHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~--~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
+|++ ++++.+.|+|..+|.+.++...||.|.+ ||||+|++++-|.+..|||.+|..|+..+..-+-||+.||+.
T Consensus 392 mK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcI----YPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~i 467 (764)
T KOG1148|consen 392 MKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCI----YPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEI 467 (764)
T ss_pred eeeeccCCCccccccceeeeecCCCCCCCCceEE----ecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhc
Confidence 9987 4578899999999999889899998888 999999999999999999999999999999999999999997
Q ss_pred CCC---cEEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPP---KFAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P---~f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
-.| +|+. ||..|+.||||+.. .|+..+|++|+.|+||.+|++.+|.... ..+-
T Consensus 468 Y~P~qwEYgR----LNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a----~~~i 539 (764)
T KOG1148|consen 468 YCPVQWEYGR----LNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTA----QTTI 539 (764)
T ss_pred ccchhhhhce----eeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCccee----ecee
Confidence 766 5787 78899999999742 5899999999999999999999996542 3455
Q ss_pred ccCCHHHHHHHhccc------ccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHH
Q psy16872 361 QLFSMKDLVEKVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEI 425 (605)
Q Consensus 361 e~~s~eeli~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i 425 (605)
+.--+|..+++.||. ++++||||+|+|++..+.+...=++-+.+-+.+--.+-+++.-++-+--+
T Consensus 540 ~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDF 610 (764)
T KOG1148|consen 540 DVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDF 610 (764)
T ss_pred cHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCCCCccccccccccceEEEEcccc
Confidence 677889999999987 59999999999999986655544444433333322334444444443333
|
|
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=379.60 Aligned_cols=278 Identities=25% Similarity=0.377 Sum_probs=237.9
Q ss_pred CceeEec-CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHFL-TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~fp-~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+|+||| +||||||||||++||+|+.||.+++|+.|+|+|||+|+.+..++++.|++||..|||.+|.. .
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~---------T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRV---------T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCccee---------e
Confidence 5689996 99999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhc----CCCceEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKE----NSKYCIR 221 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~----g~~~~iR 221 (605)
+.|++++....++.+||++|+||....+.|.+...| + .+-+++||+.+.||.. +.|.. |-..|+|
T Consensus 271 yTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER---~-----~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvR 342 (712)
T KOG1147|consen 271 YTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDER---E-----QGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVR 342 (712)
T ss_pred echhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHH---h-----ccccccccCCCHHHHHHHHHHHhccchhhhhhhee
Confidence 789999999999999999999998777776664443 2 2346889999999863 34443 4577999
Q ss_pred EEcCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 222 FKLTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 222 ~k~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
.|++.. +-.++|++..++...++...|| |..-||||+|||+|-|.+.||||.+|..|++...+++.|+.+|||.
T Consensus 343 aKIdm~s~NkaMRDPviYRcn~~pHhRTG~----KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~L 418 (712)
T KOG1147|consen 343 AKIDMSSPNKAMRDPVIYRCNPEPHHRTGD----KYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGL 418 (712)
T ss_pred eeecccCCCccccCCeeEecCCCCCCcCCC----ceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcC
Confidence 999854 5689999999998888888999 5556999999999999999999999999999999999999999999
Q ss_pred CCCc---EEEecceecCCCccccccCCC----------------CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCcc
Q psy16872 300 TPPK---FAHLPLLLNLNGSKLSKRQGD----------------MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKS 360 (605)
Q Consensus 300 ~~P~---f~H~plil~~dg~KLSKR~g~----------------~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~ 360 (605)
..|. |+. +|...+.||||+.. +||++.+++|..-|+|++|++..|.|. +.
T Consensus 419 Rkp~iwefsR----lN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk-------~v 487 (712)
T KOG1147|consen 419 RKPHIWEFSR----LNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSK-------NV 487 (712)
T ss_pred Cccceeehhh----hhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCcc-------ce
Confidence 9884 555 78889999999742 699999999999999999999999543 44
Q ss_pred ccCCHHHHHHHhccccccccc
Q psy16872 361 QLFSMKDLVEKVCNNATYNRI 381 (605)
Q Consensus 361 e~~s~eeli~~~~~~~~~~~~ 381 (605)
..+.++-+ ++.|-.+-+||
T Consensus 488 ~~meWdki--WAfNKKvIDPV 506 (712)
T KOG1147|consen 488 VTMEWDKI--WAFNKKVIDPV 506 (712)
T ss_pred eeeehHhh--hhhcccccCCC
Confidence 44555544 34665454444
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=252.68 Aligned_cols=420 Identities=19% Similarity=0.204 Sum_probs=236.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCc--------------------------------H
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFV--------------------------------P 118 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~--------------------------------~ 118 (605)
.+|||.+||||++..+-.+.+||.. .-.||.=-||.|+-|.+ +
T Consensus 31 ~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~~~~~~ 110 (510)
T PRK00750 31 IGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCHESYAE 110 (510)
T ss_pred CCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCchHHHH
Confidence 4899999999999999888888864 35788888999874443 3
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCC---
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLV--- 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~--- 193 (605)
.+.+.+.+.|+.+||++|- |++++ +-..|.+.+...+++ .+++.+.=.+-......
T Consensus 111 ~~~~~~~~~~~~~gi~~d~----------~~~t~~y~~g~~~~~i~~~l~~---------~~~i~~il~~~~~~~~~~~~ 171 (510)
T PRK00750 111 HFNAPLREFLDRFGIEYEF----------ISATECYKSGRYDEAILTALEN---------RDEIMEILLPYLGEERQATY 171 (510)
T ss_pred HHHHHHHHHHHHcCCceEE----------EehhhhhccCchHHHHHHHHHh---------HHHHHHHHHHhcCCccCCCe
Confidence 4566677788888888773 34444 223455555544443 12221111111000011
Q ss_pred -C--CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccce-eeecCCCCCCCcEEEecCCcccchhhhhhhh
Q psy16872 194 -P--KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGD-ISYNVFHNEGDPVIIKSDGFPTYHFANVVDD 269 (605)
Q Consensus 194 -~--~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~-i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD 269 (605)
| -+...|..... ..++-+....+.+.+.|.- |. ...+.... .-..-||-| +|+ -=
T Consensus 172 ~P~~pic~~cg~~~~-----------~~~~~~d~~~~~v~y~~~c-G~~~~~~~~~g-~~KL~Wr~d-W~~-------rW 230 (510)
T PRK00750 172 SPFLPICPKCGKVLT-----------TPVISYDAEAGTVTYDCEC-GHEGEVPVTGG-HGKLQWKVD-WPM-------RW 230 (510)
T ss_pred eeeeeeCCCCCccce-----------EEEEEEeCCCCEEEEEcCC-CCEEEEecCCC-CcccCCCCC-cHH-------HH
Confidence 1 11123432211 1111222222234443321 21 11111000 001112222 111 11
Q ss_pred hcCCcceEEcCCCCcc-cHHHHHHHHH-HcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 270 HHMNISHVLRGVEWQI-STTKHILIYK-AFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~-stpkqi~ly~-alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
...||+..+.|.||.. |......+.+ +||+++|...|.++++..+|+|||||+|+ +++.++.+. +.|++++.|+..
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~~ 309 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMFA 309 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHHh
Confidence 3578999999999999 9999999998 99999999899999888889999999998 689998887 999999988875
Q ss_pred hcCCCCCCCCCCccccCCH-HHHHHHhcccccccccccccccccccccc-ccc-ccccccccccCCCCCCchhhhhhhHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSM-KDLVEKVCNNATYNRIKPTIKEFGIFWFQ-TFF-NEFDLQLVNENSCKVDLTNLNEFNRA 423 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~-eeli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~F~~~~i~~~~a~fd~~KL~~~N~~ 423 (605)
.. +. ..+-.|+. ..+..+ |+.+.-....-+..--+ ... -.+.+.... |..+.+.-|.-+-+
T Consensus 310 ~~-~~------~~~~~f~~l~~~~de------y~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~l~~l~~- 373 (510)
T PRK00750 310 RP-KP------AKRLDFDVIPKLVDE------YDRFERKYFGQEEKKEEEELANPVYHIHNGN--PLPVPFRLLLNLAQ- 373 (510)
T ss_pred CC-CC------CCCCcccHHHHHHHH------HHHHHHHHhccccccchhhhhCceEEccCCC--CCCCCHHHHHHHHH-
Confidence 43 22 22333443 222220 00000000000000000 000 022221111 11122221111110
Q ss_pred HHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcc-----ccchHhhhhhhhhccccCCCcCcc
Q psy16872 424 EIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASER-----IFKLQDLVGKDFAFIWVKPSIEHL 498 (605)
Q Consensus 424 ~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~r-----i~~l~dl~~~~~~ff~~~p~~~~~ 498 (605)
.... .+.+-+..++.-.... -.+|.++++. ..|||.+....+.
T Consensus 374 ----i~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~L~el~~~-A~~~~~d~~~~~~ 421 (510)
T PRK00750 374 ----IANA---------------------------EDKEVLWGFLKRYAPGATPETHPRLDRLVEY-AINWYRDFVAPEK 421 (510)
T ss_pred ----hcCC---------------------------CCHHHHHHHHHhcCCCCCcchhHHHHHHHHH-HHHHHHhcCCHHH
Confidence 0000 1222222222221111 1568899887 5555554321111
Q ss_pred CCCCccchhhHHHHHHHHHHHhhhhhhccCC-CCChhhHHHHHHHHH-HHhCCChhhHHHHHHHHHhCCCCCCCHHHHHH
Q psy16872 499 SQHPVESYGKVMLNLTLGILEHLIPRLQTCD-PFTRDSLATPLREFS-TEQGVEYSTFMKLLRTSLSGLKQGPSVGEMME 576 (605)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e-~~~~e~i~~~lk~~~-~e~giK~k~lf~pLRiALTG~~~GP~L~eim~ 576 (605)
..+.+ .+....+|.++.+.|+..+ +|+.++|++.+++++ ++.|+|++++|+|||+||||+.+||+|+++|+
T Consensus 422 ~~k~~-------~~~~~~~L~~l~~~L~~l~~~~~~e~i~~~i~~va~~~~gik~k~~f~pLR~aLtG~~~GP~L~~~i~ 494 (510)
T PRK00750 422 KYRAP-------TEKERAALEDLDDALRELADGADAEEIQNEIYEVAKKELGVNPRDWFKALYEVLLGQSQGPRLGSFIA 494 (510)
T ss_pred HhhcC-------CHhHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 11111 1223445555555555444 599999999999999 99999999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHH
Q psy16872 577 ILTKENTIRRLRDVL 591 (605)
Q Consensus 577 lLGkee~l~RL~~al 591 (605)
+||++++++||+.++
T Consensus 495 lLGke~vl~RL~~al 509 (510)
T PRK00750 495 LLGIDFVIALIREAL 509 (510)
T ss_pred HhCHHHHHHHHHHHh
Confidence 999999999999886
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=221.34 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 512 NLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 512 ~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
+....+|.++++.|++ .+|+.++|++.++++++++|+|++++|||||+||||+.+||+|+++|++||+++|++||+.|+
T Consensus 437 ~~~~~~L~~L~~~L~~-~~~~~e~Iq~~i~~vak~~gik~k~~F~~LR~aLtG~~~GP~L~~~i~lLGke~tl~RI~~a~ 515 (515)
T TIGR00467 437 ENSKKAINELAEFLKK-NFEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPKLGGFIKILGIDRVEKRTSKYV 515 (515)
T ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHhhC
Confidence 3455667777777775 468999999999999999999999999999999999999999999999999999999999873
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=208.30 Aligned_cols=179 Identities=25% Similarity=0.312 Sum_probs=143.7
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC------------CCcHHHHHHHHHHHHHcCCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT------------RFVPEAVEKLEQDLKWIGVVPDES 138 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~------------R~~~~~~~~I~~~L~wlGl~~De~ 138 (605)
|.|+|+|||||+|++++-..+||- ++..++--++|.+.+ .....+.+.+.+++++||+.+|..
T Consensus 9 pN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d~~ 88 (212)
T cd00671 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFDVW 88 (212)
T ss_pred CCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcee
Confidence 588999999999999887777764 334555566677653 235677788999999999999976
Q ss_pred ccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCc
Q psy16872 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKY 218 (605)
Q Consensus 139 p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~ 218 (605)
+ +.|+..+...++++.|+++|.+|.- +|. .
T Consensus 89 ~---------~es~~~~~~~~~i~~L~~~g~~~~~-----------------------~g~------------------~ 118 (212)
T cd00671 89 F---------GESSYLGLMGKVVELLEELGLLYEE-----------------------DGA------------------L 118 (212)
T ss_pred c---------chhhhhhHHHHHHHHHHHCCCEEEe-----------------------CCc------------------E
Confidence 3 4666688889999999999999841 010 0
Q ss_pred eEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcCCcceE--EcCCCCcccHHHHHHH
Q psy16872 219 CIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHMNISHV--LRGVEWQISTTKHILI 293 (605)
Q Consensus 219 ~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHV--IRG~d~l~stpkqi~l 293 (605)
+ +.+.. + ....|+||+||||.|||+ +|+++|++.+++||| |+|+||...+++|..+
T Consensus 119 ~--~~~~~----~-------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~ 179 (212)
T cd00671 119 W--LDLTE----F-------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAA 179 (212)
T ss_pred E--Eechh----h-------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHH
Confidence 1 11100 0 113699999999999999 799999999999999 8999999999999999
Q ss_pred HHHcCCC-CCcEEEe--cceecCCCccccccCC
Q psy16872 294 YKAFGWT-PPKFAHL--PLLLNLNGSKLSKRQG 323 (605)
Q Consensus 294 y~alG~~-~P~f~H~--plil~~dg~KLSKR~g 323 (605)
+++|||+ +|.+.|+ |++.+.+|+|||||+|
T Consensus 180 ~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 180 LELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred HHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 9999998 7789998 6888888999999986
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=214.14 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=173.3
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHH-----HcCCeEEEeccCCCCCC-------------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAK-----SHNGSFILRIEDTDQTR-------------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar-----~~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L 128 (605)
.+|+.| |||+|++||||+|+++...+++| .++..|+..++|+|++- ....+.+.+.+++
T Consensus 20 ~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl 99 (465)
T TIGR00435 20 GKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDM 99 (465)
T ss_pred CcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 568888 69999999999999999999999 57789999999999742 1368899999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee------CCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC------FCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++|||.+|... .+.|++.+.+.+++++|+++|+||.+ ||..+ .+.| |.+.+
T Consensus 100 ~~LgI~~d~~~--------~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------~~~y-G~ls~ 156 (465)
T TIGR00435 100 KALNVLPPDLE--------PRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------FKDY-GKLSK 156 (465)
T ss_pred HHhCCCCCcCC--------ccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------cchh-ccCCC
Confidence 99999988731 26789999999999999999999964 34321 1334 33433
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
...++ +..|. |..++. .+.+..||+|||+ .|.|.||..|+
T Consensus 157 ~~~~~----~~~~~----~~~~~~----------------~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~ 212 (465)
T TIGR00435 157 QDLDQ----LEAGA----RVDVDE----------------AKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMN 212 (465)
T ss_pred CCHHH----Hhccc----ccCccc----------------ccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHH
Confidence 33332 23332 111111 1344578888874 48999999997
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCH
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP 337 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~P 337 (605)
+|=|..|+.|+. -|+.|...|-.. +.|.+.+. |.|..+ ++.+|+|||||.|+ +++.++.+. |.|
T Consensus 213 ~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a--~~g~~~~~~~~h~g~-v~~~g~KMSKS~GN~i~~~dll~~-~~~ 285 (465)
T TIGR00435 213 DKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA--AFGKQLAKYWMHNGF-LMIDNEKMSKSLGNFFTVRDVLKN-YDP 285 (465)
T ss_pred HHhcCCCceeecccccccc---chHHHHHHHHHH--hcCCCCCcEEEEeeE-EEecCccccccCCCcCCHHHHHHH-CCH
Confidence 444555555554 345554444321 35754444 688776 67899999999998 689999988 999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 338 NALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 338 eAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|+|.|++... + ..+..||.+.|.+
T Consensus 286 dalR~~ll~~~--~------~~~l~fs~~~l~~ 310 (465)
T TIGR00435 286 EILRYFLLSVH--Y------RSPLDFSEELLEA 310 (465)
T ss_pred HHHHHHHHhCC--C------CCCCccCHHHHHH
Confidence 99999998643 3 4566788887666
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=212.26 Aligned_cols=237 Identities=19% Similarity=0.317 Sum_probs=169.9
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L 128 (605)
.+|+.| |+|+|++||||+|+++...++||. ++..|+..++|+|.+- ....+++.+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 567778 699999999999999999999997 6789999999998742 2578999999999
Q ss_pred HHcCC-CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 129 KWIGV-VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 129 ~wlGl-~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++||| .+|..| +.|++.+.+.+++++|+++|+||. .||... .+.| |.-.+
T Consensus 102 ~~Lgi~~~d~~~---------r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~ 157 (463)
T PRK00260 102 DALNVLPPDIEP---------RATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSG 157 (463)
T ss_pred HHcCCCCCCccc---------cccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCC
Confidence 99999 556543 578999999999999999999995 466531 2345 33233
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
.+.++ +..|. |..+.. .+....||+|||. .|.|.||..|+
T Consensus 158 ~~~~~----~~~~~----~~~~~~----------------~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~ 213 (463)
T PRK00260 158 RNLDE----LQAGA----RVEVAE----------------EKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMS 213 (463)
T ss_pred CCHHH----HhccC----cCCccc----------------CCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 33333 23342 211111 1344578888874 58999999994
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCC
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFL 336 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~ 336 (605)
+|-|..|+.|+. =|+.|.-.|-. .++| .++ .|.|..+ ++.+|+||||+.|+ +++.++.+. |.
T Consensus 214 ~~~lg~~~Dih~gG~Dlif---pHh~neiaqs~--a~~g-~p~~~~w~H~g~-v~~~G~KMSKS~GN~i~~~dll~~-~~ 285 (463)
T PRK00260 214 TKYLGETFDIHGGGADLIF---PHHENEIAQSE--AATG-KPFANYWMHNGF-VTVNGEKMSKSLGNFFTIRDLLKK-YD 285 (463)
T ss_pred HHhcCCCcceecCccccCC---CchHhHHHHHH--HhcC-CCcceEEEEccE-EccCCCcccCcCCCCCCHHHHHHH-cC
Confidence 333444444333 16666444432 1357 443 4788876 67999999999998 689999987 99
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 337 PNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 337 PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+++|.|++. + ++ ..+-.||.+.|.+
T Consensus 286 ~d~lR~~ll~-~-~~------~~~~~fs~~~l~~ 311 (463)
T PRK00260 286 PEVLRFFLLS-A-HY------RSPLNFSEEALEQ 311 (463)
T ss_pred chHhHHHHHh-C-CC------CCCCccCHHHHHH
Confidence 9999999985 3 23 4566788887555
|
|
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=202.16 Aligned_cols=242 Identities=19% Similarity=0.285 Sum_probs=180.1
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCCC-------------CcH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQTR-------------FVP 118 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~R-------------~~~ 118 (605)
.+|+.| ||++.++||||+||++...+++|. +...|+..|.|+ |++= ...
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 478999 699999999999999998888775 346899999999 6531 246
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCC
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLV 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~ 193 (605)
.+.+.+.++++.|||.++.. .| ..|++++...+++++|+++|+||. +||..+ .
T Consensus 100 ~~~~~f~~d~~~Lni~~~~~-------~p-~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~ 157 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYPDK-------VL-VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------F 157 (481)
T ss_pred HHHHHHHHHHHHcCCCCCce-------ec-CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------c
Confidence 78889999999999998864 35 579999999999999999999995 555532 2
Q ss_pred CCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CC
Q psy16872 194 PKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DG 257 (605)
Q Consensus 194 ~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG 257 (605)
+.|. ...+.+.++... ..|. |+.++.. +.++.||+|||. .|
T Consensus 158 ~~YG-~ls~~~l~~l~~--~~~~----~v~~~~~----------------K~np~DFaLWK~~~~~~~~~~~w~spWG~G 214 (481)
T PRK14534 158 KSYG-QMAGINLNDFKD--MSVS----RVEIDKS----------------KRNKSDFVLWFTNSKFKDQEMKWDSPWGFG 214 (481)
T ss_pred cchh-hhcCCCHHHHhh--hccC----cCCcccC----------------CCCcccchhcCcCCcCCCCCCeecCCCCCc
Confidence 3452 233344443210 0122 2222211 334567777752 38
Q ss_pred cccchhhhh----------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-C
Q psy16872 258 FPTYHFANV----------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-M 325 (605)
Q Consensus 258 ~PtY~fA~v----------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~ 325 (605)
+|.||..|+ +|-|..|+.|+. =|+.|-+.|.. -+.|.+.+ .|.|..+ +..+|+|||||.|+ +
T Consensus 215 rPgWHiECsam~~~~lg~~~DIH~GG~DliF---PHHene~Aqs~--a~~g~~~~~~W~H~g~-l~~~g~KMSKSlGN~i 288 (481)
T PRK14534 215 YPSWHLECAAMNLEYFKSTLDIHLGGVDHIG---VHHINEIAIAE--CYLNKKWCDMFVHGEF-LIMEYEKMSKSNNNFI 288 (481)
T ss_pred CCcHHHHHHHHHHHHcCCcceEEecccccCC---CcchhHHHHHh--hhcCCCcceEEEEecE-EEecCceecccCCCcc
Confidence 999999997 577889998887 47778888752 22476655 5799887 55789999999997 6
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 326 SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 326 sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++++.++|+.|+++|.|+.... + ..+-.||.+.|.+
T Consensus 289 ~l~dll~~~~~~~alR~~lls~~--y------r~~l~Fs~e~l~~ 325 (481)
T PRK14534 289 TIKDLEDQGFSPLDFRYFCLTAH--Y------RTQLKFTFNNLKA 325 (481)
T ss_pred cHHHHHhcCCChhHHHHHHHhCC--C------CCCCCCCHHHHHH
Confidence 99999999999999999975433 4 5677899999888
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=202.62 Aligned_cols=240 Identities=17% Similarity=0.246 Sum_probs=178.7
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCCC-------------CcH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQTR-------------FVP 118 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~R-------------~~~ 118 (605)
.+|+.| ||+++++||||+|++|...+++|- +...|+..|.|+ |++- ...
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 578999 699999999999999998888774 446899999999 6541 245
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCC
Q psy16872 119 EAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLV 193 (605)
Q Consensus 119 ~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~ 193 (605)
.+.+.+.++++.|||.++.. -| +.+++++...+++++|+++|+||. +||... .
T Consensus 102 ~~~~~f~~d~~~Lni~~~~~-------~~-rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~ 159 (490)
T PRK14536 102 HYTAAFFRDTARLNIERPSI-------VC-NATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------F 159 (490)
T ss_pred HHHHHHHHHHHHcCCCCCce-------ec-CcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------c
Confidence 78889999999999998653 13 679999999999999999999995 566521 2
Q ss_pred CCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CC
Q psy16872 194 PKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DG 257 (605)
Q Consensus 194 ~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG 257 (605)
|.| |...+++.++. ..|. |..++. .+.+..||+|||. .|
T Consensus 160 ~~Y-G~Ls~~~~~~l----~~g~----~v~~~~----------------~K~np~DFaLWK~~~~~~~~~~~W~SpWG~G 214 (490)
T PRK14536 160 PSY-GSLASAAVEDL----QAGA----RIEHDT----------------NKRNPHDFVLWFTRSKFENHALTWDSPWGRG 214 (490)
T ss_pred cch-hhhcCCCHHHh----hcCC----cCCCCC----------------CCCCchhchhcccccCCCCCCCcccCCCCCC
Confidence 345 33334444432 2332 111111 1334567777752 38
Q ss_pred cccchhhhhh----------hhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-C
Q psy16872 258 FPTYHFANVV----------DDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-M 325 (605)
Q Consensus 258 ~PtY~fA~vV----------DD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~ 325 (605)
.|.||..|++ |-|..|+.++. =|+.|.+.|..- +.|.+.+ .|.|..+ +..+|+|||||.|+ +
T Consensus 215 RPGWHIECsaMs~~~lg~~~DIH~GG~DliF---PHHeneiAqs~a--~~g~~~~~~w~h~g~-l~~~g~KMSKSlGN~i 288 (490)
T PRK14536 215 YPGWHIECSAMSMKYLGEQCDIHIGGVDHIR---VHHTNEIAQCEA--ATGKPWVRYWLHHEF-LLMNKGKMSKSAGQFL 288 (490)
T ss_pred CCChHHHHHHHHHHHcCCceeEEeccccCCC---cchhhHHHHHHH--hcCCCcceEEEEcCE-EeecCccccccCCCcc
Confidence 8999999974 67888888887 477777777521 2466545 4788877 67899999999997 6
Q ss_pred ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 326 SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 326 sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++++.+.||.|+|+|.|+.... + .++-.||.+.|.+
T Consensus 289 tl~dll~~g~~~~alR~~lls~~--y------r~~l~Fs~e~l~~ 325 (490)
T PRK14536 289 TLSSLQEKGFQPLDYRFFLLGGH--Y------RSQLAFSWEALKT 325 (490)
T ss_pred cHHHHHhcCCCHHHHHHHHHhCC--C------CCCCCCCHHHHHH
Confidence 99999999999999999987643 4 5677899999888
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=202.49 Aligned_cols=242 Identities=21% Similarity=0.294 Sum_probs=177.8
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH---cC--CeEEEeccCCCCC---C----------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS---HN--GSFILRIEDTDQT---R----------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~---~~--G~fiLRiEDTD~~---R----------~~~~~~~~I~~~L 128 (605)
.+|++| ||++.+.||||+||+++-.++.|- .| .+|+..|.|+|.+ | ..+.++++..+|+
T Consensus 21 ~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~ 100 (464)
T COG0215 21 GKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDM 100 (464)
T ss_pred CeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 559999 699999999999999987666663 23 5899999999975 2 2467889999999
Q ss_pred HHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCC-CHHHHHHHHHHHHhCCCCCCCCCcCcCC-CH
Q psy16872 129 KWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFC-SDSRLNLIRKDAVKSGLVPKYDNKCRNL-TQ 205 (605)
Q Consensus 129 ~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfc-s~e~l~~~r~~~~~~~~~~~Y~~~cr~l-s~ 205 (605)
+.||+. +|..| +.|++++..-+++++|+++|+||...- +-. . .....+.| |.+.+. +.
T Consensus 101 ~aL~v~~p~~~P---------raTe~I~~iI~~I~~LiekG~AY~~~~G~VY-F--------dv~~f~~Y-G~LS~~~~l 161 (464)
T COG0215 101 DALNVLPPDIEP---------RATEHIDEIIEFIEKLIEKGYAYVADDGDVY-F--------DVSKFKDY-GKLSGRDSL 161 (464)
T ss_pred HHhCCCCCcccC---------cHhhCHHHHHHHHHHHHHCCceEEecCCcEE-E--------ecccchhh-HhhcCCCCh
Confidence 999994 68776 689999999999999999999997411 100 0 00112345 333211 22
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh------
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV------ 266 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v------ 266 (605)
++ +..|. |..+.. .+.++.||||||+ .|.|.||..|.
T Consensus 162 e~----l~~ga----r~~~~~----------------~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~ 217 (464)
T COG0215 162 EE----LQAGA----RVEVDE----------------EKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKY 217 (464)
T ss_pred hH----Hhhcc----cccccc----------------ccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Confidence 32 22222 111111 1445689999994 48999999997
Q ss_pred ----hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCCC--CcEEEecceecCCCccccccCCC-CChHHHHHcCCCHH
Q psy16872 267 ----VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGWTP--PKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPN 338 (605)
Q Consensus 267 ----VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~~--P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~Pe 338 (605)
+|-|-.|+.+++ =|+.|.-.| .+| .|-++ -.|.|..+ ++.+|+||||+-|+ ++|.++.+. |.|+
T Consensus 218 LG~~~DIHgGG~DLiF---PHHENEiAQ---sea~~g~~~~a~yWmH~G~-l~i~geKMSKSLGNfiti~d~l~~-~~p~ 289 (464)
T COG0215 218 LGETFDIHGGGSDLIF---PHHENEIAQ---SEAATGVKPFAKYWMHNGF-LNIDGEKMSKSLGNFITVRDLLKK-YDPE 289 (464)
T ss_pred hCCCcceecCcccccC---CCcccHHHH---HHhhhCCCcceeEeEEcce-eeecCcCcccccCCeeEHHHHHhh-cCHH
Confidence 477889999988 477787766 444 35332 25899998 88999999999998 699999999 9999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||.|+.... + .++..||-+-|.+
T Consensus 290 ~lR~~lls~H--Y------R~pl~fsee~L~~ 313 (464)
T COG0215 290 VLRLFLLSSH--Y------RSPLDFSEELLEE 313 (464)
T ss_pred HHHHHHHHHH--h------CCccccCHHHHHH
Confidence 9999998765 4 5677888777666
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=205.59 Aligned_cols=240 Identities=19% Similarity=0.269 Sum_probs=178.3
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| ||++|++||||+|+++...+++|- +...|+..|+|+|.+= ....+.+.+.++
T Consensus 78 ~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 78 EGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred CCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678999 699999999999999998888874 4569999999999741 246888999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ 202 (605)
++.|||..... --+.|++++...+++++|+++|+||. +||... .+.| |.-.+
T Consensus 158 ~~~LnI~~p~~--------~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~ 214 (557)
T PLN02946 158 MAYLHCLPPSV--------EPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSG 214 (557)
T ss_pred HHHCCCCCCCe--------ecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCC
Confidence 99999974432 12688999999999999999999995 555531 2345 22223
Q ss_pred CCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh---
Q psy16872 203 LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV--- 266 (605)
Q Consensus 203 ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v--- 266 (605)
.+.++ +..|. |..++. .+.+..||+|||. .|.|.||..|.
T Consensus 215 ~~l~~----l~~g~----rv~~~~----------------~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs 270 (557)
T PLN02946 215 RKLED----NRAGE----RVAVDS----------------RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMS 270 (557)
T ss_pred CChhH----hhcCC----CCCccc----------------ccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHH
Confidence 33332 23343 212111 1445679999984 58999999997
Q ss_pred -------hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCH
Q psy16872 267 -------VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP 337 (605)
Q Consensus 267 -------VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~P 337 (605)
+|-|..||.|++ =|+.|.-.|.. .+.|.+.- .|.|..++. .+|+|||||.|+ ++++++.+. |.|
T Consensus 271 ~~~lG~~~DIH~GG~DL~F---PHHENEiAQse--a~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~-y~~ 343 (557)
T PLN02946 271 AAYLGHSFDIHGGGMDLVF---PHHENEIAQSC--AACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDL-YHP 343 (557)
T ss_pred HHHcCCCeeEeccccccCC---CcccchHHHHH--HHhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHh-cCc
Confidence 678899999998 47778766652 12454322 579999854 899999999998 699999987 999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 338 NALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 338 eAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++|.|+.... + ..+..||.+.|..
T Consensus 344 dalR~~lLs~h--y------r~~l~fs~e~L~~ 368 (557)
T PLN02946 344 LALRLFLLGTH--Y------RSPINYSDVQLES 368 (557)
T ss_pred cceeeeeeccC--C------CCCcEecHHHHHH
Confidence 99999997643 4 4566788887665
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-20 Score=205.18 Aligned_cols=224 Identities=24% Similarity=0.310 Sum_probs=166.6
Q ss_pred CceeEe--cCCCCcCChhhHHHHHHHHHHHHH--cCCe---EEEeccCCCC-------------CCCcHHHHHHHHHHHH
Q psy16872 70 LKLKHF--LTSTGLLHLGGLRTALYNYLFAKS--HNGS---FILRIEDTDQ-------------TRFVPEAVEKLEQDLK 129 (605)
Q Consensus 70 ~~v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~--~~G~---fiLRiEDTD~-------------~R~~~~~~~~I~~~L~ 129 (605)
.++..| |+|+|+|||||+|++++.+.+||- ..|- ++--++|.+. .+.++.+.+.+.++|+
T Consensus 112 ~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (507)
T PRK01611 112 KVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLD 191 (507)
T ss_pred EEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 699999999999999999999986 3454 4455588874 3457889999999999
Q ss_pred HcCCCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQ 207 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e 207 (605)
|||+.+|..+ +.|+ +.+.+.++++.|.++|.+|.- ++|
T Consensus 192 ~LgI~~D~~~---------~es~~~~~~~~~~~~~~L~~~G~~y~~----------------------~~G--------- 231 (507)
T PRK01611 192 RLGVHFDVWF---------SESELYYNGKVDEVVEDLKEKGLLYVE----------------------SDG--------- 231 (507)
T ss_pred HcCCeeeEEe---------ecCcchhcchHHHHHHHHHHCCCEEEe----------------------eCC---------
Confidence 9999998643 2232 235789999999999999920 011
Q ss_pred HHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcCCcceE--EcCCC
Q psy16872 208 IDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHMNISHV--LRGVE 282 (605)
Q Consensus 208 ~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHV--IRG~d 282 (605)
..+ |++.. |.| ..|+||+||||.|||. +|...+-+.. .+++ |.|.|
T Consensus 232 ---------a~~--~~~~~----~~~-------------~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~ 282 (507)
T PRK01611 232 ---------ALW--VRLTE----FGD-------------DKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGAD 282 (507)
T ss_pred ---------cEE--EEchh----hCC-------------CCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEECCC
Confidence 011 12110 101 1489999999999997 5554444433 4666 58999
Q ss_pred CcccHHHHHHHHHHcCCCCCc---EEEe--cceecCCCccccccCCC-CChHHHHHcCCCH----------------HHH
Q psy16872 283 WQISTTKHILIYKAFGWTPPK---FAHL--PLLLNLNGSKLSKRQGD-MSVEAIRNSEFLP----------------NAL 340 (605)
Q Consensus 283 ~l~stpkqi~ly~alG~~~P~---f~H~--plil~~dg~KLSKR~g~-~sv~~~r~~G~~P----------------eAl 340 (605)
|....+++..+.++||+.++. +.|. .++++.+|+|||||.|. +++.++.++++.. +|+
T Consensus 283 q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAi 362 (507)
T PRK01611 283 HHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAV 362 (507)
T ss_pred hHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhcccee
Confidence 999999999999999998553 7884 47889999999999996 6999999997777 888
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.|+.... . ..+-.|+++.+..
T Consensus 363 R~~~L~~~--~------~~~~~Fd~~~~~~ 384 (507)
T PRK01611 363 RYFDLSRS--R------DKDLDFDLDLALS 384 (507)
T ss_pred EehhhhcC--C------CCCCccCHHHHHh
Confidence 88876542 2 4566899998876
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=190.31 Aligned_cols=250 Identities=17% Similarity=0.224 Sum_probs=175.2
Q ss_pred ceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHHHH
Q psy16872 71 KLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQDLK 129 (605)
Q Consensus 71 ~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L~ 129 (605)
+|+.| |||.|++||||+|++|...+++|- +...|+..|+|.|.+= ....+.+.+.++++
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 78889 699999999999999998888875 3468999999998752 24678889999999
Q ss_pred HcCC-CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCH-HHHHHHHHHHHhCCCCCCCCCcCcCCCHHH
Q psy16872 130 WIGV-VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD-SRLNLIRKDAVKSGLVPKYDNKCRNLTQEQ 207 (605)
Q Consensus 130 wlGl-~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~-e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e 207 (605)
.||| .+|-.| +.|+.++..++++++|+++|+||.---.+ ..+ + -.-...+.| |...+...++
T Consensus 89 ~Lni~~~~~~~---------raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~V--Y----Fdv~~~~~Y-G~ls~~~~~~ 152 (384)
T PRK12418 89 ALRVLPPRDYV---------GAVESIPEVVELVEKLLASGAAYVVDDEEYPDV--Y----FSVDATPQF-GYESGYDRAT 152 (384)
T ss_pred HhCCCCCCccc---------cCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccE--E----EecCchhhc-ccccCCCHHH
Confidence 9997 677654 78899999999999999999999621100 000 0 000112345 4444444444
Q ss_pred HHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh--------
Q psy16872 208 IDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV-------- 266 (605)
Q Consensus 208 ~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v-------- 266 (605)
....+ |. |. ++. .| ..+.++.||+|||+ .|.|.||..|+
T Consensus 153 ~~~~~--~~----~~-~~~-----~~--------~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg 212 (384)
T PRK12418 153 MLELF--AE----RG-GDP-----DR--------PGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLG 212 (384)
T ss_pred HHhhh--cc----cc-cCc-----cc--------ccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcC
Confidence 32110 11 10 000 00 01345678999884 58999999996
Q ss_pred --hhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHH
Q psy16872 267 --VDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALI 341 (605)
Q Consensus 267 --VDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~ 341 (605)
+|-|..|+.|+. =|+.|.-.|-. .++|-. .+ .|.|..+ ++.+|+||||+.|+ +++.++.+.|+.|+++|
T Consensus 213 ~~~DIH~GG~DL~F---PHHeneiaq~~--a~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR 286 (384)
T PRK12418 213 SGFDIQGGGSDLIF---PHHEFSAAHAE--AATGERRFARHYVHAGM-IGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIR 286 (384)
T ss_pred CCcccccCcccccc---chhHhHHHHHH--HhcCCCCcceEEEECCE-ECCCCCcccCcCCCcCCHHHHHhccCChhhee
Confidence 577888888887 37777666642 124642 23 4788775 78999999999998 79999998999999999
Q ss_pred HHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 342 NFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 342 nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|++.. ++ ..+..||.+.|.+
T Consensus 287 ~~lls~--~y------r~~l~fs~e~l~~ 307 (384)
T PRK12418 287 LALLAG--HY------RADREWTDAVLAE 307 (384)
T ss_pred EEEecc--CC------CCCcccCHHHHHH
Confidence 998632 34 4566788888766
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=196.53 Aligned_cols=239 Identities=18% Similarity=0.326 Sum_probs=178.3
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| |||++++||||+|+++...+++|. +...|+..|+|+|.+- ....+.+.+.++
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678999 699999999999999998888884 4469999999999752 246788999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee------eCCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK------CFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
++.|||..+..- | +.|++++...+++++|+++|+||. +||... .+.| |...
T Consensus 326 ~~~LnI~~p~~~-------p-raTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS 382 (699)
T PRK14535 326 ADALGVLRPDIE-------P-KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLS 382 (699)
T ss_pred HHHcCCCCCcEe-------e-CccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-cccc
Confidence 999999987631 2 578999999999999999999994 456531 2445 3333
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh--
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV-- 266 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v-- 266 (605)
+.+.++ +..|. |..++. .+....||+|||+ .|.|.||..|+
T Consensus 383 ~~~~~~----l~~g~----rve~d~----------------~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAM 438 (699)
T PRK14535 383 GKSLDD----LRAGE----RVEVDG----------------FKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAM 438 (699)
T ss_pred CCChHH----hcCCC----cccccc----------------ccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHH
Confidence 344433 23333 111111 1345679999983 58999999997
Q ss_pred --------hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCC------------C--C---cEEEecceecCCCccccc
Q psy16872 267 --------VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGWT------------P--P---KFAHLPLLLNLNGSKLSK 320 (605)
Q Consensus 267 --------VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~------------~--P---~f~H~plil~~dg~KLSK 320 (605)
+|-|..||.|++ =|+.|--.|- +| .|.+ . | .|.|..++. .+|+||||
T Consensus 439 s~~~LG~~~DIHgGG~DLiF---PHHENEiAQs---eA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSK 511 (699)
T PRK14535 439 SENLFGDTFDIHGGGADLQF---PHHENEIAQS---VGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSK 511 (699)
T ss_pred HHHHcCCcceeECCccccCC---CCCccHHHHH---HHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCC
Confidence 578999999998 4888866664 43 3542 1 1 589999854 89999999
Q ss_pred cCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 321 RQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 321 R~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.|+ +++.++.+. |.|+++|.|++... + ..+..||.+.|.+
T Consensus 512 SLGN~it~~dlLe~-ygpdalRl~lLssh--Y------RspL~fS~e~Le~ 553 (699)
T PRK14535 512 SLGNFFTIREVLKQ-YDPEVVRFFILRAH--Y------RSPLNYSDAHLDD 553 (699)
T ss_pred CCCCcCCHHHHHHh-CCHHHHHHHHHcCC--C------CCCCCcCHHHHHH
Confidence 9998 689999987 99999999998633 4 4556788776655
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=187.31 Aligned_cols=245 Identities=22% Similarity=0.322 Sum_probs=153.5
Q ss_pred CCCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHH
Q psy16872 68 IPLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQ 126 (605)
Q Consensus 68 ~~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~ 126 (605)
.+.+|+.| ||+..+.||||+||+++-.++.|- +..+++..|.|+|.+- ....+++.+.+
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 35779999 699999999999999987666654 4579999999999641 24688999999
Q ss_pred HHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeC-CCHHHHHHHHHHHHhCCCCCCCCCcCcCCCH
Q psy16872 127 DLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCF-CSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205 (605)
Q Consensus 127 ~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cf-cs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~ 205 (605)
||+.|||...... -+.||+++...+++++|+++|+||.-- -+-- -.-.+.+.| |.-.+...
T Consensus 85 dm~~Lnv~~p~~~--------prate~i~~ii~~i~~Li~~G~AY~~~~g~VY---------Fdv~~~~~Y-G~Ls~~~~ 146 (300)
T PF01406_consen 85 DMKALNVLPPDHY--------PRATEHIPEIIELIEKLIDKGHAYESEDGSVY---------FDVSKFPDY-GKLSNQDL 146 (300)
T ss_dssp HHHHTT----SEE--------EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEE---------E-CCGSTTT-TTTTT-SH
T ss_pred HHHHcCCCCCccc--------cchhccHHHHHHHHHHHHHCCCeEEcCCCcEE---------Eeecccccc-ccccccch
Confidence 9999999885431 278999999999999999999999742 1000 000112455 33333444
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhh-----
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVV----- 267 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vV----- 267 (605)
+++. .|.. ..+. ..+....||+|||. .|.|.||..|++
T Consensus 147 ~~l~----~~~~----~~~~----------------~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~ 202 (300)
T PF01406_consen 147 EDLE----AGAR----VEVD----------------YEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKY 202 (300)
T ss_dssp HHHH----HCHH----HTT-----------------TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHH
T ss_pred hhHH----hhhh----cccc----------------cccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHH
Confidence 4332 2210 0000 11445689999984 589999999974
Q ss_pred -----hhhcCCcceEEcCCCCcccHHHHHHHHHHc-CCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 268 -----DDHHMNISHVLRGVEWQISTTKHILIYKAF-GWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 268 -----DD~~m~ITHVIRG~d~l~stpkqi~ly~al-G~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
|-|..|+.|+. =|+.|.- +..+|+ |-+.. .|.|..+ ++.+|+||||+.|+ ++|+++.+. |.|++
T Consensus 203 lG~~~DIH~GG~DL~F---PHHENEi---Aqs~a~~g~~~a~~W~H~g~-l~~~g~KMSKSlgN~~~i~dll~~-~~~~~ 274 (300)
T PF01406_consen 203 LGDTFDIHGGGIDLIF---PHHENEI---AQSEAATGKPFANYWMHNGH-LNVDGEKMSKSLGNFITIRDLLKK-YSPDA 274 (300)
T ss_dssp HTTSEEEEEEEGGGTT---THHHHHH---HHHHHHHSS-SEEEEEEE---EEETTCE--TTTT---BHHHHHTT-S-HHH
T ss_pred cCCCceEEccccccCC---CCccchH---HHHHHhhCchHHHHHHHHHH-HhhcCccccccCCCEEEHHHHhhc-CCHHH
Confidence 44555555554 2444433 344554 62222 5899998 66799999999997 699999976 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|+..-. + +.+..||.+.|.+
T Consensus 275 lR~~~l~~h--Y------r~~l~~s~~~l~~ 297 (300)
T PF01406_consen 275 LRLFLLSTH--Y------RKPLNFSEENLEE 297 (300)
T ss_dssp HHHHHHTS---T------TS-EEE-HHHHHH
T ss_pred HHHHHhcCC--C------CCccccCHHHHHH
Confidence 999986544 4 4677888887765
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=185.48 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=170.8
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCC-------------CcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTR-------------FVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|++++||||+|+++...+++|- +...|+..|+|.|.+= ....+.+.+.++
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678889 699999999999999999888884 4468999999999751 235788889999
Q ss_pred HHHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCH-HHHHHHHHHHHhCCCCCCCCCcCcCCCH
Q psy16872 128 LKWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSD-SRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205 (605)
Q Consensus 128 L~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~-e~l~~~r~~~~~~~~~~~Y~~~cr~ls~ 205 (605)
++.||+. +|..| +.|+..+...+++++|+++|+||.-.-.. ..+ + -.-...+.| |.-.+.+.
T Consensus 114 ~~~Lni~~~d~~~---------RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~V--Y----Fdv~~~~~Y-G~Ls~~~~ 177 (411)
T TIGR03447 114 MEALRVLPPRDYI---------GAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDV--Y----FSIEATEQF-GYESGYDR 177 (411)
T ss_pred HHHcCCCCCCccc---------CCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcE--E----Eeccchhcc-ccccCCCH
Confidence 9999976 66653 68999999999999999999999521100 000 0 000012334 22233444
Q ss_pred HHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhh-----
Q psy16872 206 EQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVV----- 267 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vV----- 267 (605)
++...-+ +.. . ...++ ..+.+..||+|||+ .|.|.||..|++
T Consensus 178 ~~~~~~~--~~~-~--~~~~~---------------~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~ 237 (411)
T TIGR03447 178 ATMLELF--AER-G--GDPDR---------------PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNR 237 (411)
T ss_pred HHHHhhh--ccc-c--cCccc---------------ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHH
Confidence 4322100 110 0 01100 01345679999984 599999999974
Q ss_pred -----hhhcCCcceEEcCCCCcccHHHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHH
Q psy16872 268 -----DDHHMNISHVLRGVEWQISTTKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPN 338 (605)
Q Consensus 268 -----DD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~Pe 338 (605)
|-|..|+.++. =|+.|.-.|- +| .|- +.+ .|.|..+ ++.+|+||||+.|+ +++.++.+.|+.|+
T Consensus 238 lg~~~Dih~GG~DLif---pHheneiaq~---~A~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~dl~~~g~dp~ 310 (411)
T TIGR03447 238 LGAGFDIQGGGSDLIF---PHHEFSAAHA---EAATGVRRMARHYVHAGM-IGLDGEKMSKSLGNLVFVSKLRAAGVDPA 310 (411)
T ss_pred cCCceecccCcccccc---cchHhHHHHH---HHhcCCCCcceEEEECCE-ECcCCCCccCcCCCCCCHHHHHhcCCCcc
Confidence 55556666655 2555544443 33 454 333 4788876 78999999999998 69999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 339 Al~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++|.|++.. .+ ..+..||.+.|.+
T Consensus 311 ~lRl~lls~--~Y------r~pl~fs~e~l~~ 334 (411)
T TIGR03447 311 AIRLGLLAG--HY------RQDRDWTDAVLAE 334 (411)
T ss_pred cEEEEEecC--CC------CCCCccCHHHHHH
Confidence 999999632 34 4566788877766
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=179.12 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=168.9
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH------cCCeEEEeccCCCCCC--------------CcHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS------HNGSFILRIEDTDQTR--------------FVPEAVEKLE 125 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~------~~G~fiLRiEDTD~~R--------------~~~~~~~~I~ 125 (605)
+.+|+.| ||++++.|||||||++...+++|- +...|+..|+|+|.+= ....+++.+.
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3578999 688899999999999998888773 3369999999999751 1247888999
Q ss_pred HHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcC
Q psy16872 126 QDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKC 200 (605)
Q Consensus 126 ~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~c 200 (605)
++++.|||.++... | +.|++++...+++++|+++|+||. .|+... .+. . ...|.
T Consensus 138 ~d~~~Lni~~p~~~-------~-r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~----f~~---~---~~~Yg--- 196 (651)
T PTZ00399 138 EDMKALNVRPPDVI-------T-RVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA----FRK---A---GHVYP--- 196 (651)
T ss_pred HHHHHcCCCCCccc-------c-CcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh----ccc---c---hhhHH---
Confidence 99999999886542 2 459999999999999999999995 344321 000 0 01231
Q ss_pred cCCCHHHH--HHHHhcCCCceEEE-EcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhh
Q psy16872 201 RNLTQEQI--DEKLKENSKYCIRF-KLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFA 264 (605)
Q Consensus 201 r~ls~~e~--~~~~~~g~~~~iR~-k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA 264 (605)
.|+++.. ...+..|... + .+.. .+....||+|||. .|.|.||..
T Consensus 197 -~L~p~~~~~~~~~~~g~~~---l~~~~~----------------~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiE 256 (651)
T PTZ00399 197 -KLEPESVADEDRIAEGEGA---LGKVSG----------------EKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIE 256 (651)
T ss_pred -hhChhhcCCHHHHhcccCC---ccccCc----------------CCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHH
Confidence 2433211 1112223210 1 0000 1223456666652 489999998
Q ss_pred hh----------hhhhcCCcceEEcCCCCcccHHHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHH
Q psy16872 265 NV----------VDDHHMNISHVLRGVEWQISTTKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAI 330 (605)
Q Consensus 265 ~v----------VDD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~ 330 (605)
|. +|-|-.||.+++ =|+.|.-.|- +| +|- +.+ .|.|.+. ++.+|.|||||.|+ +++.++
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~F---PHHeNEiAQs---eA~~~~~~~v~y~~H~G~-L~i~G~KMSKSLGNfItp~dl 329 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKF---PHHDNELAQS---EAYFDKHQWVNYFLHSGH-LHIKGLKMSKSLKNFITIRQA 329 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCC---CcchhHHHHH---HHhhCCCCCCcEEEEEEE-EEeccchhhhcCCCcccHHHH
Confidence 86 456777777776 3666655554 33 343 223 5799888 77899999999998 799999
Q ss_pred HHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 331 RNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 331 r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+. |.|+++|.|++.. ++ ..+..||.+.|.+
T Consensus 330 Lek-ygaDaLR~~lLs~--~~------~~dldFS~e~l~~ 360 (651)
T PTZ00399 330 LSK-YTARQIRLLFLLH--KW------DKPMNYSDESMDE 360 (651)
T ss_pred HHH-cChHHHHHHHHhc--CC------CCCCccCHHHHHH
Confidence 998 9999999999754 34 4567799988766
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=141.66 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred chhhhhhhhhcCCc---ceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecCCCccccccC
Q psy16872 261 YHFANVVDDHHMNI---SHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLNGSKLSKRQ 322 (605)
Q Consensus 261 Y~fA~vVDD~~m~I---THVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~dg~KLSKR~ 322 (605)
|++.+++|+...++ ||+++|.||..+...+..+.+++|+. .|.+.|.+++...+|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999999886 6899999999998999999985
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=159.33 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=150.0
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|||||.+||||+|+.+...+++|.. ...|+.-+||.|.+ .....+.+.|.++|+.|||+
T Consensus 7 ~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~ 86 (511)
T PRK11893 7 TPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNIS 86 (511)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3347999999999999999999988864 34677788887652 23567889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcC-------
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRN------- 202 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~------- 202 (605)
+|..+. -.+.++.+..+++.++|.++|++|. .||..++.-. .......+. | +...|..
T Consensus 87 ~D~~~~-------t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~l~~~~-p-~~~~~~~~~~~~~~ 156 (511)
T PRK11893 87 YDDFIR-------TTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFY-TESELIEDG-Y-RCPPTGAPVEWVEE 156 (511)
T ss_pred cCCcee-------CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccC-CHHHhcCCC-C-CCCCCCCcceEEec
Confidence 997431 1233478889999999999999996 3444331100 000000110 1 1222321
Q ss_pred ------CCH--HHHHHHHhcCCCceEEEEcCCCc-cceeccccceeeecCCCCCCCcEEEe-------------------
Q psy16872 203 ------LTQ--EQIDEKLKENSKYCIRFKLTNHT-ESWQDLVYGDISYNVFHNEGDPVIIK------------------- 254 (605)
Q Consensus 203 ------ls~--~e~~~~~~~g~~~~iR~k~~~~~-~~~~D~v~G~i~~~~~~~~~D~Vi~k------------------- 254 (605)
++. +++.+....+.. +.. |... -.+.+.+ +....|+.|.|
T Consensus 157 ~~~f~~l~~~~~~l~~~~~~~~~---~~~-p~~~~~~~~~~l--------~~~~~D~~isR~~~~WGipiP~~~~~~~~v 224 (511)
T PRK11893 157 ESYFFRLSKYQDKLLELYEANPD---FIQ-PASRRNEVISFV--------KSGLKDLSISRTNFDWGIPVPGDPKHVIYV 224 (511)
T ss_pred CeEEEEcHHHHHHHHHHHHhCCC---ccC-CHHHHHHHHHHH--------HCCCCCcccCCCCCCCCccCCCCCCceEEE
Confidence 111 112221111100 000 0000 0000000 01123444444
Q ss_pred c-CCcccchhh------hh-----hhhhc-CCcceEEcCCCCccc-HHHHHHHHHHcCCCCC-cEEEecceecCCCcccc
Q psy16872 255 S-DGFPTYHFA------NV-----VDDHH-MNISHVLRGVEWQIS-TTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 255 s-DG~PtY~fA------~v-----VDD~~-m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P-~f~H~plil~~dg~KLS 319 (605)
+ |....|.-+ +. ...+. ..+ |++ |.|.+.. +.-..++..++|.+.| .+.|+.+++ .+|+|||
T Consensus 225 Wfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~-~~~-G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMS 301 (511)
T PRK11893 225 WFDALTNYLTALGYPDDEELLAELFNKYWPADV-HLI-GKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMS 301 (511)
T ss_pred EecCcHHHHhHhccccccccchhHHHhcCCCcc-eEe-cccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeec
Confidence 1 111111111 11 01111 111 444 7776642 0011233345687777 467777765 5899999
Q ss_pred ccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 320 KRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 320 KR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||.|+ +++.++.+. |.++|+|.|++..+ .. ..+..||.+++.+
T Consensus 302 KS~GN~i~~~dll~~-~g~DalR~~ll~~~-~~------~~d~~Fs~~~~~~ 345 (511)
T PRK11893 302 KSLGNVIDPFDLVDE-YGVDAVRYFLLREI-PF------GQDGDFSREAFIN 345 (511)
T ss_pred ccCCcEEcHHHHHHH-cCcHHHHHHHHhcC-CC------CcCCCCCHHHHHH
Confidence 99998 689999988 99999999999875 12 4556799998755
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=149.03 Aligned_cols=447 Identities=19% Similarity=0.239 Sum_probs=228.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QS 151 (605)
+|||..||||.|-.+-.++.+|.. .-++|-=-||-|+-|.++..+..-..-=+.||....+.|+--|-++.| +
T Consensus 28 sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G~~~Sy--a 105 (521)
T COG1384 28 SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFGCCDSY--A 105 (521)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCccccchH--H
Confidence 899999999999877777777763 458888999999998766554433333357899999988766655554 3
Q ss_pred ccHHHHHHHHHHHHHCCCEeeeCCCHHHH-------HHH-----HH-HH-----HhCCCC---------CCCCCcCcCCC
Q psy16872 152 KRLALYQKEVQTLLHNGSAYKCFCSDSRL-------NLI-----RK-DA-----VKSGLV---------PKYDNKCRNLT 204 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l-------~~~-----r~-~~-----~~~~~~---------~~Y~~~cr~ls 204 (605)
+|+. +.+.+.|-.-|--|. +-+..++ +.. |. +. .-.|.+ |.+ -.|-...
T Consensus 106 ~hf~--~~f~~~l~~~Gi~~E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~~~~e~~~P~~piC-~kcGri~ 181 (521)
T COG1384 106 EHFL--RPFEEFLDEFGIEVE-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGRELEEDWSPFMPIC-EKCGRIL 181 (521)
T ss_pred HHHH--HHHHHHHHhcCCceE-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCCcccCCceeccccc-cccCCcc
Confidence 3332 234444445554332 2222211 000 10 00 001110 111 1122110
Q ss_pred HHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCc
Q psy16872 205 QEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQ 284 (605)
Q Consensus 205 ~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l 284 (605)
..++.+ -++. .+|+.+-..+.....|+-.|.+..++ |=| +|+= ++ ..|||-=-=|.||.
T Consensus 182 ~t~v~~--~d~~-~~v~Y~Ce~Gh~g~v~ir~g~~KL~W----------Rvd-Wp~R-W~------~lgVd~EPfGKDH~ 240 (521)
T COG1384 182 TTPVIE--WDGE-GTVEYRCECGHEGEVDIRGGEGKLPW----------RVD-WPMR-WA------ALGVDFEPFGKDHA 240 (521)
T ss_pred eeEEEE--ecCC-ceEEEEecCCccceeeccccCccccc----------CcC-ccch-hh------ccCcccccCCcccc
Confidence 000000 0011 23333333222222222222211111 101 2221 11 12333333588888
Q ss_pred ccHHHH---HHHH-HHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCc
Q psy16872 285 ISTTKH---ILIY-KAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSK 359 (605)
Q Consensus 285 ~stpkq---i~ly-~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~ 359 (605)
++---+ ..|. +-+|+++|.=.-.-+++...|.||||++|. +++++..+- +.||-|+.|+++-- + ..
T Consensus 241 a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r~k--P------~r 311 (521)
T COG1384 241 AAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIARTK--P------NR 311 (521)
T ss_pred cccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeeecC--C------Cc
Confidence 743222 2233 468999984222223344557899999997 699999887 78888888776532 2 12
Q ss_pred cccCCHHH----HHHHhccc-ccccccccccccccccccccccccccccccccCC----CCCCchhhhhhhHHHHHhhcc
Q psy16872 360 SQLFSMKD----LVEKVCNN-ATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENS----CKVDLTNLNEFNRAEIRRVMS 430 (605)
Q Consensus 360 ~e~~s~ee----li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~----a~fd~~KL~~~N~~~i~~~~~ 430 (605)
.-.|+++. +.++.-.. -.|--.+. -- +.+.+.+.+-++++..-| ..+.+.-|.- |-+...
T Consensus 312 ~~~~d~~~~il~lvDEydr~e~~Y~~~e~----~~--~~e~~~r~yels~~~~pP~~~~~~vpFr~l~~-----l~qi~~ 380 (521)
T COG1384 312 HIDFDFDLGILKLVDEYDRLERIYFGEED----AK--EDERLKRIYELSHPGNPPERLPYQVPFRHLAV-----LVQIAN 380 (521)
T ss_pred ceecCCCCChhHHHHHHHHHHHHHhcccc----ch--hhhhhcCeEEeecCCCCcccCCCCCCHHHHHH-----HHHHcC
Confidence 22233322 22210000 00000000 00 334445556565555533 2233333321 112211
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchHhhhhhhhhccccCCCcCccCCCCccchhhHH
Q psy16872 431 TGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVM 510 (605)
Q Consensus 431 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~ 510 (605)
.+ ..+++..+.. .+.......+.+++...+..+++ =+.+... ..++|..++.... ..+ .
T Consensus 381 ~~----~e~il~~~~~----~~~~~~~~~~~~~l~~~i~~A~~---W~~~yaP--~~~kf~~~e~~~~--~el------s 439 (521)
T COG1384 381 AE----EEDILEILIR----RYLPDADPDTIEDLDERIEYAIN---WLRDYAP--EKVKFSILEKPPE--AEL------S 439 (521)
T ss_pred Cc----hHHHHHHHHH----hccCCCChhhHHHHHHHHHHHHH---HHHHhCc--cceeecccccccc--chh------c
Confidence 11 0233333332 22222222233444444433332 2334433 2333332221110 011 1
Q ss_pred HHHHHHHHHhhhhhhccCCCCChh-hHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 511 LNLTLGILEHLIPRLQTCDPFTRD-SLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 511 ~~~~l~lL~~~l~~L~~~e~~~~e-~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
....+++|.++++.+++.+.+..| +++..+.+++++.++.++.+|+.++.+|.|+.+||.++.+|.+||++++.+||+.
T Consensus 440 ~~~~~~~L~~~a~~les~~~~~~e~~~~~~vy~~a~~~~~~~~~~F~~~Y~vliGk~~GPRlg~Fla~lg~dfv~~rir~ 519 (521)
T COG1384 440 EDAKLEALEDLAEFLESIQKASLEVELHNEVYEVAKKKGILPRAFFQALYRVLIGKERGPRLGSFLALLGVDFVIRRIRL 519 (521)
T ss_pred hHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCccHHHHHHHhChHHHHHHHHh
Confidence 122336677766777765556545 8999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q psy16872 590 VL 591 (605)
Q Consensus 590 al 591 (605)
++
T Consensus 520 ~~ 521 (521)
T COG1384 520 AL 521 (521)
T ss_pred cC
Confidence 63
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=152.68 Aligned_cols=265 Identities=25% Similarity=0.338 Sum_probs=168.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||++|.|-...+||-. .|.=++=+-.||. +-.+..+.+.+.++++||+|++|.
T Consensus 14 pY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~ 93 (558)
T COG0143 14 PYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDN 93 (558)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 5999999999999999999999964 5777776666763 334567888899999999999998
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHH-HHHHHHhCCCCC----------CCCCcC-
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNL-IRKDAVKSGLVP----------KYDNKC- 200 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~-~r~~~~~~~~~~----------~Y~~~c- 200 (605)
. +....+++.+.-+++.++|.++|..|. -||.+.+.-. .|. -.|.-| .|++ |
T Consensus 94 F-------~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~---v~g~cp~cg~~~arGD~Ce~-Cg 162 (558)
T COG0143 94 F-------IRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRY---VEGTCPKCGGEDARGDQCEN-CG 162 (558)
T ss_pred c-------ccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchh---eeccCCCcCccccCcchhhh-cc
Confidence 5 445666788899999999999999985 3454443211 110 011111 2333 4
Q ss_pred cCCCHHHHHH--HHhcCCCceEE------EEcCCCccceeccccceeeec----------------CCCCCCCcEEEe--
Q psy16872 201 RNLTQEQIDE--KLKENSKYCIR------FKLTNHTESWQDLVYGDISYN----------------VFHNEGDPVIIK-- 254 (605)
Q Consensus 201 r~ls~~e~~~--~~~~g~~~~iR------~k~~~~~~~~~D~v~G~i~~~----------------~~~~~~D~Vi~k-- 254 (605)
+.++|.+..+ -..+|..+++| |+++. |.|.+...+..+ .+....|.-|-|
T Consensus 163 ~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~----~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 163 RTLDPTELINPVCVISGATPEVREEEHYFFRLSK----FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred CcCCchhcCCCeeEeeCCCcccccceeEEEEHHH----hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCC
Confidence 4567765311 11233333333 44431 111111111000 011223333333
Q ss_pred -----------------c-CCcccch-----hh-----hhh-----hhhcCCcceEEcCCCCcccHHHHHHHHHHc----
Q psy16872 255 -----------------S-DGFPTYH-----FA-----NVV-----DDHHMNISHVLRGVEWQISTTKHILIYKAF---- 297 (605)
Q Consensus 255 -----------------s-DG~PtY~-----fA-----~vV-----DD~~m~ITHVIRG~d~l~stpkqi~ly~al---- 297 (605)
+ |..-.|- ++ ... +| .-++-|+| |.|-+ +.|..++.|+
T Consensus 239 ~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfI-GKDii---~FHav~wPamL~~~ 313 (558)
T COG0143 239 LDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFI-GKDII---RFHAVYWPAMLMAA 313 (558)
T ss_pred CCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEe-ccccC---cchhhHHHHHHHhC
Confidence 2 2111121 11 111 12 55678998 88855 7788777763
Q ss_pred CCCCCc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 298 GWTPPK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 298 G~~~P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|.+.|. ++|- -+..+|+||||+.|. +...++.++ |.|+++|.||+.-. +. ..+..||++++++
T Consensus 314 ~~~lP~~i~ahg--~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~-p~------~~D~dFs~~~f~~ 379 (558)
T COG0143 314 GLPLPTRIFAHG--FLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLAREL-PE------GSDGDFSWEDFVE 379 (558)
T ss_pred CCCCCCEEEeee--eEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhC-CC------CCCCCCCHHHHHH
Confidence 677774 4553 356788899999998 799999988 99999999999876 22 5677899999999
|
|
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=147.19 Aligned_cols=230 Identities=21% Similarity=0.255 Sum_probs=160.3
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHH------HcCCeEEEeccCCCCC---CCc---------------HHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAK------SHNGSFILRIEDTDQT---RFV---------------PEAVE 122 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar------~~~G~fiLRiEDTD~~---R~~---------------~~~~~ 122 (605)
.+|+.| ||++..-||||||+++--.++-| .++-.|+..|.|+|.+ |.. .-+++
T Consensus 54 ~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~ 133 (586)
T KOG2007|consen 54 NKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEE 133 (586)
T ss_pred CeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence 458999 68889999999999986555444 3678999999999975 332 13668
Q ss_pred HHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHH-HHHHHHHHHHhCCCCC-CCCCcC
Q psy16872 123 KLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDS-RLNLIRKDAVKSGLVP-KYDNKC 200 (605)
Q Consensus 123 ~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e-~l~~~r~~~~~~~~~~-~Y~~~c 200 (605)
...+||..|.+-+.... .+-||+++..-.+++++|++|.||.-..|-- .+ ...+ .| |.|
T Consensus 134 eF~~DM~~LnvLpPtv~--------tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv----------~kf~~~Y-gKL 194 (586)
T KOG2007|consen 134 EFLQDMAALNVLPPTVQ--------TRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDV----------DKFPHSY-GKL 194 (586)
T ss_pred HHHHHHHHhCCCCCccc--------chhhhchHHHHHHHHHHHhCCceeeeCCcEEEec----------ccccchh-hhh
Confidence 89999999998664331 3789999999999999999999997422200 00 0111 23 222
Q ss_pred cCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhh-
Q psy16872 201 RNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANV- 266 (605)
Q Consensus 201 r~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~v- 266 (605)
. .+. +.+.+|+. .....-+....||.|||+ .|.|.||..|.
T Consensus 195 ---~-G~~-~~~~~gEg--------------------~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSa 249 (586)
T KOG2007|consen 195 ---V-GQR-KNLQEGEG--------------------VLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSA 249 (586)
T ss_pred ---c-Cch-hhcccCcC--------------------ccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHH
Confidence 2 110 12222321 000011345679999984 59999999886
Q ss_pred ---------hhhhcCCcceEEcCCCCcccHHHHHHH-HHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCC
Q psy16872 267 ---------VDDHHMNISHVLRGVEWQISTTKHILI-YKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEF 335 (605)
Q Consensus 267 ---------VDD~~m~ITHVIRG~d~l~stpkqi~l-y~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~ 335 (605)
+|-|-.||...+ -|+.|.-.|..- |+.=-| .-.|.|.+- +..+|.||||+-++ +||++..+. |
T Consensus 250 Mas~~lG~~lDIH~GG~DL~F---PHHeNEiAQ~eA~~~~~~w-VnYflHtGh-L~i~g~KMSKSLkNFiTIke~Lk~-~ 323 (586)
T KOG2007|consen 250 MASAILGSQLDIHGGGIDLAF---PHHENEIAQSEAAFDDSQW-VNYFLHTGH-LTINGEKMSKSLKNFITIKEALKK-Y 323 (586)
T ss_pred HHHHhhccccceecCcccccC---CCcccHHHHHHHHhcCCcc-ceeEEEcCe-eeeccchhhhhhccceeHHHHHHh-c
Confidence 478889999887 588887777532 221112 125788876 67889999999776 799999998 9
Q ss_pred CHHHHHHHHHHhcC
Q psy16872 336 LPNALINFVTNFGG 349 (605)
Q Consensus 336 ~PeAl~nfla~lG~ 349 (605)
+|.++|-|+.+.-|
T Consensus 324 sp~qLRl~fl~~~w 337 (586)
T KOG2007|consen 324 SPRQLRLAFLLHQW 337 (586)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987764
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=135.90 Aligned_cols=246 Identities=19% Similarity=0.280 Sum_probs=141.3
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|+|||.+||||+|+.+...++||.. .| .|+.-+||.+.+ .....+.+.|.++++.|||+
T Consensus 6 ~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 85 (319)
T cd00814 6 TALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNIS 85 (319)
T ss_pred eCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 3347999999999999999999999853 45 455566666432 24568889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHH---------------HHHHHHHHH---hCC
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSR---------------LNLIRKDAV---KSG 191 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~---------------l~~~r~~~~---~~~ 191 (605)
+|..+.. .++.+.+.-+++.++|.++|.+|. .+|..++ |...+.... ..+
T Consensus 86 ~D~~~~t-------t~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~ 158 (319)
T cd00814 86 FDYFIRT-------TSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKN 158 (319)
T ss_pred CCCCeeC-------CCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhC
Confidence 9964321 233466778899999999999995 2332221 233222111 111
Q ss_pred CCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-CCcccchhhhh----
Q psy16872 192 LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-DGFPTYHFANV---- 266 (605)
Q Consensus 192 ~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-DG~PtY~fA~v---- 266 (605)
.....+ .--..++.+.+.+|.+. +-+. +|.+..-|..+ . ..+.++.-+ |....|- ++.
T Consensus 159 ~~~~~p----~~~~~~~~~~l~~~l~d---~~is------R~~~~WGipvp--~-~~~~~~yvWfda~~~y~-~~~~~~~ 221 (319)
T cd00814 159 PDFIWP----ENARNEVLSWLKEGLKD---LSIT------RDLFDWGIPVP--L-DPGKVIYVWFDALIGYI-SATGYYN 221 (319)
T ss_pred CccCCC----HHHHHHHHHHHhCCCcc---cCCC------ccCcccCeeCC--C-CCCcEEEEehhhHHHHH-HHccccc
Confidence 100010 00011222333333210 0000 01100011111 0 123444333 3222221 110
Q ss_pred --------hhhhcCCcceEEcCCCCcccHHHHH----HHHHHcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 267 --------VDDHHMNISHVLRGVEWQISTTKHI----LIYKAFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 267 --------VDD~~m~ITHVIRG~d~l~stpkqi----~ly~alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
--+..-.+.|++ |.|.+. .|. .+..++|+++| .+.++..+ ..+|+||||+.|. +++.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~v~~~-G~D~~~---fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g~kmSkS~gn~i~~~~~l~ 296 (319)
T cd00814 222 EEWGNSWWWKDGWPELVHFI-GKDIIR---FHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEGKKMSKSRGNVVDPDDLLE 296 (319)
T ss_pred ccccchhhhhcCCCceEEEE-eechhh---hhHHHHHHHHHhCCCCCCcEeeeeeeE-EECCeeecccCCcccCHHHHHH
Confidence 012234467877 888874 232 34456788866 45555553 4459999999996 79999999
Q ss_pred cCCCHHHHHHHHHHhc
Q psy16872 333 SEFLPNALINFVTNFG 348 (605)
Q Consensus 333 ~G~~PeAl~nfla~lG 348 (605)
. |.|+++|.|++..+
T Consensus 297 ~-~~~d~~R~~l~~~~ 311 (319)
T cd00814 297 R-YGADALRYYLLRER 311 (319)
T ss_pred H-cCchHHHHHHHhcC
Confidence 8 89999999999887
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=149.75 Aligned_cols=269 Identities=19% Similarity=0.268 Sum_probs=157.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+++.+..+++||.+ .|.=++-+-.||. .-....+.+.+.+++++|||++|.
T Consensus 11 py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d~ 90 (673)
T PRK00133 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFDN 90 (673)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5999999999999999999999964 4655555555553 223567899999999999999996
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCC------CCC---cC-cC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPK------YDN---KC-RN 202 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~------Y~~---~c-r~ 202 (605)
.+. ....++.+.-+++.++|.++|.+|. .||..++--.- +..-.|.-|. +-. .| +.
T Consensus 91 f~r-------tt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~--~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 91 YGS-------THSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLP--DRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred Ccc-------CCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCcc--chheecccCCCCCcccCCchhhhcccc
Confidence 421 1233688899999999999999996 56655431100 0000111110 000 12 22
Q ss_pred CCHHHHHHHH--hcCCCceEE------EEcCCC----------c----------------cceeccc------c-ceeee
Q psy16872 203 LTQEQIDEKL--KENSKYCIR------FKLTNH----------T----------------ESWQDLV------Y-GDISY 241 (605)
Q Consensus 203 ls~~e~~~~~--~~g~~~~iR------~k~~~~----------~----------------~~~~D~v------~-G~i~~ 241 (605)
+.+.++.+.. ..|.+..+| |+++.- . ....|+- . |. .+
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi-pv 240 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGF-EI 240 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccce-EC
Confidence 3333322110 122222222 332210 0 0011211 1 21 11
Q ss_pred cCCCCCCCcEEEec-CCcccchhhhh----------hhhhc-----CCcceEEcCCCCcccHHHHHH----HHHHcCCCC
Q psy16872 242 NVFHNEGDPVIIKS-DGFPTYHFANV----------VDDHH-----MNISHVLRGVEWQISTTKHIL----IYKAFGWTP 301 (605)
Q Consensus 242 ~~~~~~~D~Vi~ks-DG~PtY~fA~v----------VDD~~-----m~ITHVIRG~d~l~stpkqi~----ly~alG~~~ 301 (605)
+ . ..+.|++-+ |..+.|-.+.. .+++- ..+.|+| |.|-+ ..|.. ++-+.|+++
T Consensus 241 P--~-~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~---~fH~i~wpa~l~a~g~~l 313 (673)
T PRK00133 241 P--G-APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDII---YFHTLFWPAMLEGAGYRL 313 (673)
T ss_pred C--C-CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecch---hHHHHHHHHHHHhCCCCC
Confidence 1 1 134555443 44455532221 11111 2356877 87765 55643 334579988
Q ss_pred Cc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCC-ccccCCHHHHHH
Q psy16872 302 PK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTS-KSQLFSMKDLVE 370 (605)
Q Consensus 302 P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~-~~e~~s~eeli~ 370 (605)
|. ..-+.+++. +|+|||||.|+ ++..++.+. |.++|+|.|++..+ . .. .+..|+.+++..
T Consensus 314 P~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~--~-----~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 314 PTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKL--P-----ETIDDLDFNWEDFQQ 376 (673)
T ss_pred CCEEeeeccEEe-cCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcC--C-----CCCCCCCCCHHHHHH
Confidence 84 333455555 99999999998 689999998 99999999998776 2 23 456899998765
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=142.80 Aligned_cols=93 Identities=23% Similarity=0.365 Sum_probs=71.2
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCe---EEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGS---FILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~---fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-.|+|||.+||||+|+.+....+||.. .|. |+.-+||.|. ......+.+.+.+++++|||+
T Consensus 5 ~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 84 (530)
T TIGR00398 5 TALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNIS 84 (530)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3347999999999999999999999853 454 4445555443 223568889999999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+|..+. ...+.+.+..+++.++|.++|.+|.
T Consensus 85 ~D~~~~-------t~~~~~~~~v~~~~~~L~~kG~iY~ 115 (530)
T TIGR00398 85 FDRFIR-------TTDEEHKEIVQKIFQKLKENGYIYE 115 (530)
T ss_pred CCCCcc-------CCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 986421 1234477888999999999999994
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=130.49 Aligned_cols=225 Identities=19% Similarity=0.259 Sum_probs=128.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC--------------------------CCcHHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT--------------------------RFVPEAVEKL 124 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~--------------------------R~~~~~~~~I 124 (605)
|+|||.+||||+++.+....++|.. .| .|+.-+||.+.+ ....++.+.|
T Consensus 9 P~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 9 PYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999988888888753 45 455555554421 1135778889
Q ss_pred HHHHHHcCCCCC--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCC----------HHHHHHHHHHHHhCCC
Q psy16872 125 EQDLKWIGVVPD--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCS----------DSRLNLIRKDAVKSGL 192 (605)
Q Consensus 125 ~~~L~wlGl~~D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs----------~e~l~~~r~~~~~~~~ 192 (605)
.++|+.|||..| .... ....++.+..++..++|.++|++|.-.-. -.++...-.+..+.+.
T Consensus 89 ~~~l~~lgI~~Dw~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~ 161 (312)
T cd00668 89 KEDFRRLGISYDWSDEYI-------TTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK 161 (312)
T ss_pred HHHHHHhCccccCCCCeE-------CCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC
Confidence 999999999766 4311 12335677889999999999999982111 0011110001111110
Q ss_pred CCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecC----Ccccchhhhhhh
Q psy16872 193 VPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSD----GFPTYHFANVVD 268 (605)
Q Consensus 193 ~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksD----G~PtY~fA~vVD 268 (605)
.++... ..+..+.+.++. |+.|-|.- |.|.+++-|=.|
T Consensus 162 --~~p~~~----~~~~~~~l~~~~--------------------------------d~~isR~~~WG~~~P~~~i~~Wfd 203 (312)
T cd00668 162 --IVPEHV----KNRMEAWLESLL--------------------------------DWAISRQRYWGTPLPEDVFDVWFD 203 (312)
T ss_pred --cCChHH----HHHHHHHHhCCC--------------------------------CeEEeccCCCCCcCCcccccchhh
Confidence 010000 001111111111 33333311 223444333110
Q ss_pred ---------hhc---------CCc-ceEEcCCCCcc-cHHHHHHHHHHcCCC-CC--cEEEecceecCCCccccccCCC-
Q psy16872 269 ---------DHH---------MNI-SHVLRGVEWQI-STTKHILIYKAFGWT-PP--KFAHLPLLLNLNGSKLSKRQGD- 324 (605)
Q Consensus 269 ---------D~~---------m~I-THVIRG~d~l~-stpkqi~ly~alG~~-~P--~f~H~plil~~dg~KLSKR~g~- 324 (605)
.+. ... -|++ |.|++. -....++...+++.. +| .+.| .+++..+|+|||||.|+
T Consensus 204 s~~~~~~~~~~~~~~~~~~~~~~~di~~~-G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~ 281 (312)
T cd00668 204 SGIGPLGSLGYPEEKEWFKDSYPADWHLI-GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNV 281 (312)
T ss_pred ccHHHHHHcCCCccchhhhhcCCceEEEE-ecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCc
Confidence 000 012 3433 777762 222233444566654 45 2466 77777777999999998
Q ss_pred CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 325 MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 325 ~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+++.++.+. |.|+|+|.|++..+
T Consensus 282 v~~~d~~~~-~~~da~R~~l~~~~ 304 (312)
T cd00668 282 IDPSDVVEK-YGADALRYYLTSLA 304 (312)
T ss_pred CCHHHHHHH-cCcHHHHHHHHhcC
Confidence 789999988 99999999998866
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=149.03 Aligned_cols=271 Identities=18% Similarity=0.250 Sum_probs=158.2
Q ss_pred cCCCCcCChhhHHH-HHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 76 LTSTGLLHLGGLRT-ALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 76 p~PtG~LHiG~~Rt-AL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
|||||.+||||+++ .|....+||.+ .|.=++-+-.||. .-....+.+.+.+.++||||+||
T Consensus 26 pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D 105 (801)
T PLN02610 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFD 105 (801)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Confidence 69999999999995 68789999975 5877777777773 12345666778889999999999
Q ss_pred CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHH-HHHHHHhCCCCCC--------CCC---c
Q psy16872 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNL-IRKDAVKSGLVPK--------YDN---K 199 (605)
Q Consensus 137 e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~-~r~~~~~~~~~~~--------Y~~---~ 199 (605)
.... ....++.+.-+++..+|.++|..|. =||..++.-. .| .-.|.=|. |-. .
T Consensus 106 ~f~r-------T~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~---~v~G~CP~~~C~~~~a~Gd~Ce~ 175 (801)
T PLN02610 106 KFGR-------TSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADR---LVEGTCPTEGCNYDSARGDQCEK 175 (801)
T ss_pred cCcc-------CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchH---HhcCcCCccccCccccccchhhh
Confidence 6422 2223456677888889999999996 3454432211 11 01121111 100 1
Q ss_pred C-cCCCHHHHHHHH--hcCCCceEE------EEcCCCcc-----------------------------ceecc------c
Q psy16872 200 C-RNLTQEQIDEKL--KENSKYCIR------FKLTNHTE-----------------------------SWQDL------V 235 (605)
Q Consensus 200 c-r~ls~~e~~~~~--~~g~~~~iR------~k~~~~~~-----------------------------~~~D~------v 235 (605)
| +.+.+.|+.+.. ..|.+.++| |+++.-.. .+.|+ =
T Consensus 176 Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~ 255 (801)
T PLN02610 176 CGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLK 255 (801)
T ss_pred ccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecC
Confidence 3 223444332110 123333332 33321000 01111 0
Q ss_pred cceeeecCCCCCCCcEEEec-CCcccchhhhh------hhhh-----cCCcceEEcCCCCcccHHHHHHHHHH----cC-
Q psy16872 236 YGDISYNVFHNEGDPVIIKS-DGFPTYHFANV------VDDH-----HMNISHVLRGVEWQISTTKHILIYKA----FG- 298 (605)
Q Consensus 236 ~G~i~~~~~~~~~D~Vi~ks-DG~PtY~fA~v------VDD~-----~m~ITHVIRG~d~l~stpkqi~ly~a----lG- 298 (605)
.| |..+ .....+.|+.-+ |....| ++.. -+++ .-.+.|+| |.|-+ +.|..++-| +|
T Consensus 256 WG-ipvP-~~~~~~~v~YVWfDAl~~Y-is~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~---~fH~i~wPa~L~a~g~ 328 (801)
T PLN02610 256 WG-VPVP-LEKYKDKVFYVWFDAPIGY-VSITACYTPEWEKWWKNPENVELYQFM-GKDNV---PFHTVMFPSTLLGTGE 328 (801)
T ss_pred Cc-ccCC-CCCCCCcEEEEehhhHHHH-HHHHhhhhhHHHHhcCCcccceEEEEE-eeecc---hhHHHHHHHHHHhCCC
Confidence 01 1111 000124555544 333334 2221 1122 22347988 88754 778766654 46
Q ss_pred -CCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 299 -WTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 299 -~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+.|.-.+.--.++.+|+||||+.|+ +...++.+.+|.++++|.||+..+ .. ..+..||++++++
T Consensus 329 ~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~-p~------~~D~dFs~~~f~~ 395 (801)
T PLN02610 329 NWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNR-PE------VSDTLFTWADLQA 395 (801)
T ss_pred CcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcC-CC------CCCCcCCHHHHHH
Confidence 55774322222367899999999998 689999988899999999999876 22 4667899999887
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=139.43 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=150.5
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+|||||++.+....+||.. .| .|+--+||.+.+ ....++.+.+.+.+++|||+||.
T Consensus 78 pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D~ 157 (616)
T PLN02224 78 YYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDK 157 (616)
T ss_pred CCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3999999999999999999999974 35 455555555421 22346667888999999999996
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCc-----------
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCR----------- 201 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr----------- 201 (605)
.+. ....++.+.-++...+|.++|..|. -||..++.-..-.+.. .+ + +...|.
T Consensus 158 f~r-------Tt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-~~--~-~~~~~~~~~~~~~e~~~ 226 (616)
T PLN02224 158 FIR-------TTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-EN--N-CCPVHQMPCVARKEDNY 226 (616)
T ss_pred Cee-------CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc-CC--C-CCCCCCCcceEEecceE
Confidence 421 1122366777888899999999996 1343332100000000 10 1 100111
Q ss_pred --CCCH--HHHHHHHhcCCCceEE----E-------E--cCCCccceeccccceeeecCCCCCCCcEEEec-CCcccchh
Q psy16872 202 --NLTQ--EQIDEKLKENSKYCIR----F-------K--LTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-DGFPTYHF 263 (605)
Q Consensus 202 --~ls~--~e~~~~~~~g~~~~iR----~-------k--~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-DG~PtY~f 263 (605)
+|+. +.+.+.+.+... .++ . + +++-.++ +|.+..-|..+ ..++.||.-+ |....|--
T Consensus 227 ff~Ls~~~~~L~~~~~~~~~-~~~p~~~~~~~~~~l~~gL~d~~IS-R~~~~WGIpvP---~~~~~viYVWfDAl~~Yls 301 (616)
T PLN02224 227 FFALSKYQKPLEDILAQNPR-FVQPSYRLNEVQSWIKSGLRDFSIS-RALVDWGIPVP---DDDKQTIYVWFDALLGYIS 301 (616)
T ss_pred EEEhHHHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHhcCCCCcccc-CCCCCCceECC---CCCCcEEEEehhhHHHHHH
Confidence 1111 112222222211 111 0 0 0000011 12111111111 1245677654 43344422
Q ss_pred hhhh--hh---------hcCCcceEEcCCCCcccHHHHHHHHH----HcCCCCCc-EEEecceecCCCccccccCCC-CC
Q psy16872 264 ANVV--DD---------HHMNISHVLRGVEWQISTTKHILIYK----AFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MS 326 (605)
Q Consensus 264 A~vV--DD---------~~m~ITHVIRG~d~l~stpkqi~ly~----alG~~~P~-f~H~plil~~dg~KLSKR~g~-~s 326 (605)
|.-- ++ +--..-|+| |.|.+. .|..++- ++|++.|. +..+.. ++.+|+||||+.|+ ++
T Consensus 302 ~~~~~~~~~~~~~~~~~~w~~~v~~i-GKDii~---fH~i~wpa~l~~~g~~~P~~i~~~g~-l~~eG~KMSKS~GN~i~ 376 (616)
T PLN02224 302 ALTEDNKQQNLETAVSFGWPASLHLI-GKDILR---FHAVYWPAMLMSAGLELPKMVFGHGF-LTKDGMKMGKSLGNTLE 376 (616)
T ss_pred HhcccccccccchhhccCCCcceEEE-eecccc---cHHHHHHHHHHHCCCCCCcEEEeccc-EecCCccccccCCccCC
Confidence 2110 00 112356887 888874 4655554 45888884 333455 67899999999997 78
Q ss_pred hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 327 VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 327 v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.++.+. |.|+++|.||+..+ .+ ..+..||.+++++
T Consensus 377 p~e~l~~-ygaD~~R~yLl~~~-p~------~~d~~fs~~~~~~ 412 (616)
T PLN02224 377 PFELVQK-FGPDAVRYFFLREV-EF------GNDGDYSEDRFIK 412 (616)
T ss_pred HHHHHHH-cCcHHHHHHHHhcC-CC------cCCCCCCHHHHHH
Confidence 8999888 99999999998875 22 4556899998765
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-12 Score=142.72 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=69.3
Q ss_pred ecCCCCcCChhhHHHH-HHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCC
Q psy16872 75 FLTSTGLLHLGGLRTA-LYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 75 fp~PtG~LHiG~~RtA-L~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.|+|||.|||||+++. +...++||.. .| .|+--+||.+.+ -....+.+.+.++++.|||+|
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 90 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY 90 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3699999999999998 8888888853 45 444455555432 124678899999999999999
Q ss_pred CCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 136 DESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|..+ +.+ ++.+.-+++.++|.++|.+|.
T Consensus 91 d~~~---------~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 91 DLFT---------RTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred CCCc---------CCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 8653 334 778889999999999999996
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-13 Score=147.38 Aligned_cols=276 Identities=22% Similarity=0.318 Sum_probs=146.4
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl 133 (605)
++-.|+|||.|||||+.+.|....+||.+ .|.=++-+-.|| |+.....+.+.|.+.++.+||
T Consensus 4 Tt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I 83 (391)
T PF09334_consen 4 TTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNI 83 (391)
T ss_dssp EEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred ecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 35557999999999999999999999965 465566555554 334466788899999999999
Q ss_pred CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCC------C---c
Q psy16872 134 VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYD------N---K 199 (605)
Q Consensus 134 ~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~------~---~ 199 (605)
++|.... ...+++.+.-+++.++|.++|..|. =||..++-- -.+..-.|.-|.+. . .
T Consensus 84 ~~D~F~r-------Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~f--l~e~~v~g~CP~C~~~~a~g~~Ce~ 154 (391)
T PF09334_consen 84 SYDRFIR-------TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERF--LPESFVEGTCPYCGSDKARGDQCEN 154 (391)
T ss_dssp --SEEEE-------TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEE--E-GGGETCEETTT--SSCTTTEETT
T ss_pred CCcceeC-------CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcc--cccceeeccccCcCccccCCCcccC
Confidence 9997532 1223566677889999999999995 233332110 00111122222111 1 1
Q ss_pred Cc-CCCHHHHHHH--HhcCCCceEE------EEcCCCccceeccccce-----------eeecCCCCCCC----------
Q psy16872 200 CR-NLTQEQIDEK--LKENSKYCIR------FKLTNHTESWQDLVYGD-----------ISYNVFHNEGD---------- 249 (605)
Q Consensus 200 cr-~ls~~e~~~~--~~~g~~~~iR------~k~~~~~~~~~D~v~G~-----------i~~~~~~~~~D---------- 249 (605)
|. .+.++|+.+. ...|.+..+| |+++.-...+.+.+... +.--.+....|
T Consensus 155 cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WG 234 (391)
T PF09334_consen 155 CGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWG 234 (391)
T ss_dssp TSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSS
T ss_pred CCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCc
Confidence 21 1221111000 0123333444 44432100111111000 00000111223
Q ss_pred --------cEEEec-CCcccchhhh---------------hh-hhhcCCcceEEcCCCCcccHHHHHHHHH----HcCCC
Q psy16872 250 --------PVIIKS-DGFPTYHFAN---------------VV-DDHHMNISHVLRGVEWQISTTKHILIYK----AFGWT 300 (605)
Q Consensus 250 --------~Vi~ks-DG~PtY~fA~---------------vV-DD~~m~ITHVIRG~d~l~stpkqi~ly~----alG~~ 300 (605)
.||.-+ |..+.|-.+. .- +|-...+.|+| |.|. ++-|..++. |+|++
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi---~~fH~i~~pa~l~a~~~~ 310 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDI---IRFHAIYWPAMLLAAGLP 310 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGG---HHHHHTHHHHHHHHCTB-
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccch---hHHHHHHhHHHHhcccCC
Confidence 333322 2222221111 11 34446788998 8875 577875554 46888
Q ss_pred CCc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 301 PPK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 301 ~P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|. +.|-= +..+|+||||+.|. +++.++.+. |.++++|.||+..+ . ...+..||.+++++
T Consensus 311 lP~~i~~~~~--~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~--~-----~~~d~~F~~~~~~~ 373 (391)
T PF09334_consen 311 LPRRIVVHGF--LTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREG--P-----EGQDSDFSWEDFIE 373 (391)
T ss_dssp --SEEEEE----EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHS--S-----TTS-EEE-HHHHHH
T ss_pred CCCEEEeeee--EEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhc--C-----CCCCCCCCHHHHHH
Confidence 885 34432 44589999999986 799999999 99999999999987 3 24567899999988
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=122.69 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=49.9
Q ss_pred hhhcCCcceEEcCCCCcccHHHHHHHHHH-cCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHH
Q psy16872 268 DDHHMNISHVLRGVEWQISTTKHILIYKA-FGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFV 344 (605)
Q Consensus 268 DD~~m~ITHVIRG~d~l~stpkqi~ly~a-lG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfl 344 (605)
|-|..|+.|+. =|+.|...| ..| .|-+.+ .+.|.. +++.+|+|||||.|+ +++.++.+. |.|+|+|.|+
T Consensus 130 dih~~G~Dl~f---pH~~~~~a~---~~a~~g~~~~~~~~h~~-~v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~~~ 201 (213)
T cd00672 130 DIHGGGVDLIF---PHHENEIAQ---SEAATGKPFARYWLHTG-HLTIDGEKMSKSLGNFITVRDALKK-YDPEVLRLAL 201 (213)
T ss_pred cEEeecCCCCc---ChHHHHHHH---HHHHhCCCCCcEEEEEE-EEeccCcchhhcCCCccCHHHHHHH-cCHHHHHHHH
Confidence 44555555544 244443333 334 354334 477874 478999999999998 689999986 9999999999
Q ss_pred HHhc
Q psy16872 345 TNFG 348 (605)
Q Consensus 345 a~lG 348 (605)
+...
T Consensus 202 l~~~ 205 (213)
T cd00672 202 LSSH 205 (213)
T ss_pred HhCC
Confidence 7654
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=140.49 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=64.2
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcC-CcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecc-eecCCCcccc
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHM-NISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPL-LLNLNGSKLS 319 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m-~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~pl-il~~dg~KLS 319 (605)
.|.||+||||.+||. +|...+=+.. +.+++| -|.||..--++-..+.++|||..+ .+-|+.. +++.+|+|||
T Consensus 294 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmS 373 (562)
T PRK12451 294 PPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMS 373 (562)
T ss_pred CceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCc
Confidence 489999999999995 4444443433 566665 699998766666677889999754 5778774 3456888999
Q ss_pred ccCCC-CChHHHHHc
Q psy16872 320 KRQGD-MSVEAIRNS 333 (605)
Q Consensus 320 KR~g~-~sv~~~r~~ 333 (605)
||.|. ++++++.+.
T Consensus 374 tR~G~~v~l~dLlde 388 (562)
T PRK12451 374 TRKGRVVLLEEVLEE 388 (562)
T ss_pred CCCCCeeEHHHHHHH
Confidence 99996 688888875
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=140.08 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=79.3
Q ss_pred CCcEEEecCCcccchh---hhhhhhhcCCcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecceecCCCcccccc
Q psy16872 248 GDPVIIKSDGFPTYHF---ANVVDDHHMNISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPLLLNLNGSKLSKR 321 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~f---A~vVDD~~m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~plil~~dg~KLSKR 321 (605)
.|.||+||||.+||-- |...+=...+.+++| -|.||..--++-..+.++||++.| .+.|++.-+- +|.|||||
T Consensus 298 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr 376 (566)
T TIGR00456 298 KDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTR 376 (566)
T ss_pred CCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCcc
Confidence 4899999999999942 222222223566765 799999877776788889999877 6888775332 35799999
Q ss_pred CCC-CChHHHHHc----------------------CCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 322 QGD-MSVEAIRNS----------------------EFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 322 ~g~-~sv~~~r~~----------------------G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.|. +++.++.++ -+..+|++.|+...+ . .++-.|+++.+.+
T Consensus 377 ~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~--~------~~d~~Fd~d~~~~ 440 (566)
T TIGR00456 377 RGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN--R------ETHYVFDWDAMLS 440 (566)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC--C------CCCceecHHHHhc
Confidence 997 455532222 133478888887765 2 4667899987766
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=139.38 Aligned_cols=264 Identities=20% Similarity=0.304 Sum_probs=145.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+++.+....+||.. .| .|+--.||.+.+ .....+.+.|.++|++|||++|.
T Consensus 13 py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 13 YYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5999999999999999999999853 35 444455544432 24568889999999999999997
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCC---------
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNL--------- 203 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~l--------- 203 (605)
.+.. ....+.+.-+++.++|.++|++|.- ||..++.-. -......+ +.+ -.|..-
T Consensus 93 f~rT-------t~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l-~~~~l~~~--~~c-~~cg~~~e~~~~~~~ 161 (648)
T PRK12267 93 FIRT-------TDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFF-TESQLVDG--GKC-PDCGREVELVKEESY 161 (648)
T ss_pred CeeC-------CCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccC-ChHHhccC--CcC-CCCCCcCeEEecceE
Confidence 5321 1223566778999999999999962 443332110 00000010 111 112110
Q ss_pred --CHHHHHHH----HhcCCC----ceEE--EE-------cCCCccceeccc-cceeeecCCCCCCCcEEEec-CCcccch
Q psy16872 204 --TQEQIDEK----LKENSK----YCIR--FK-------LTNHTESWQDLV-YGDISYNVFHNEGDPVIIKS-DGFPTYH 262 (605)
Q Consensus 204 --s~~e~~~~----~~~g~~----~~iR--~k-------~~~~~~~~~D~v-~G~i~~~~~~~~~D~Vi~ks-DG~PtY~ 262 (605)
.....+++ ..++.. ...+ +. +++-.++ +|.+ .|. ..+ . ..+.|+.-+ |--..|
T Consensus 162 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~IS-R~~~~WGi-pvP--~-~~~~v~yVWfDA~~~y- 235 (648)
T PRK12267 162 FFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSIS-RTSFDWGI-PVP--F-DPKHVVYVWIDALLNY- 235 (648)
T ss_pred EEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccC-CCCCCcce-ECC--C-CCCCEEEEcccchHHH-
Confidence 00111111 111110 0000 00 0000000 1101 121 111 1 134566543 222222
Q ss_pred hhhh---------hhhhcCCcceEEcCCCCcccHHHHHHHH----HHcCCCCCc--EEEecceecCCCccccccCCC-CC
Q psy16872 263 FANV---------VDDHHMNISHVLRGVEWQISTTKHILIY----KAFGWTPPK--FAHLPLLLNLNGSKLSKRQGD-MS 326 (605)
Q Consensus 263 fA~v---------VDD~~m~ITHVIRG~d~l~stpkqi~ly----~alG~~~P~--f~H~plil~~dg~KLSKR~g~-~s 326 (605)
++.. ..++--...|++ |.|.+. .|..+| .++|+++|. ++| .. +..+|+||||+.|+ ++
T Consensus 236 ~s~~~~~~~~~~~~~~~wp~~~~~~-GkDii~---fH~i~wpa~l~~~~~~~p~~v~~h-g~-l~~eg~KMSKS~GN~i~ 309 (648)
T PRK12267 236 ITALGYGSDDDELFKKFWPADVHLV-GKDILR---FHAIYWPIMLMALGLPLPKKVFAH-GW-WLMKDGKMSKSKGNVVD 309 (648)
T ss_pred HHHcCCCCCCchHHHhhcccceEEE-eeeecc---hhHHHHHHHHHhCCCCCCcEEEec-ce-EEECCceecccCCcccC
Confidence 1111 001111234655 787764 566554 456888885 333 33 34578999999997 68
Q ss_pred hHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 327 VEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 327 v~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..++.+. |.|+++|.||+..+ .. ..+..||.+++.+
T Consensus 310 p~d~l~~-ygaD~lR~~L~~~~-~~------~~D~~fs~~~~~~ 345 (648)
T PRK12267 310 PEELVDR-YGLDALRYYLLREV-PF------GSDGDFSPEALVE 345 (648)
T ss_pred HHHHHHH-cCCcHHHHHHHhcC-CC------CCCCCCCHHHHHH
Confidence 8898887 99999999998765 22 3456799998865
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=134.06 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 117 VPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 117 ~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
+....+.|.++|+.||+++|..... ..|-+-....+.++.|.++|.+|.-
T Consensus 238 v~~~l~~~k~~l~~l~V~fD~~~~E-------~e~~~~~~~~~vv~~L~~~~~~~e~----------------------- 287 (577)
T COG0018 238 VDLSLEGIKETLDRLGVKFDVYDSE-------GESFYNGKVEKVVEDLEEKGLLYED----------------------- 287 (577)
T ss_pred HHHHHHHHHHHHHHhCcccceeecc-------chhhhcccHHHHHHHHHhcCCEeee-----------------------
Confidence 3445677888889999998874211 1222223466788888888888850
Q ss_pred CC-cCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccch---hhhhhhhhcC
Q psy16872 197 DN-KCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYH---FANVVDDHHM 272 (605)
Q Consensus 197 ~~-~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~---fA~vVDD~~m 272 (605)
+| .|-.++. ++ + .....|.||+||||.++|- +|...+=+..
T Consensus 288 ~GA~~vdl~~----------------~~-~------------------~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~ 332 (577)
T COG0018 288 DGALVVDLLK----------------FK-K------------------FGDDKDRVLQKSDGTYLYFTRDIAYHLYKFER 332 (577)
T ss_pred CCeEEEehhh----------------hh-h------------------cCCCCCeEEEEcCCCeeeehhHHHHHHHHHhc
Confidence 11 1111110 00 0 1224699999999999994 6666665555
Q ss_pred CcceEE--cCCCCcccHHHHHHHHHHcCCCCCc--EEEec--ceecCCCccccccCCC-CChHHHHHcCCC---------
Q psy16872 273 NISHVL--RGVEWQISTTKHILIYKAFGWTPPK--FAHLP--LLLNLNGSKLSKRQGD-MSVEAIRNSEFL--------- 336 (605)
Q Consensus 273 ~ITHVI--RG~d~l~stpkqi~ly~alG~~~P~--f~H~p--lil~~dg~KLSKR~g~-~sv~~~r~~G~~--------- 336 (605)
+-+.+| -|.||...-++-....+++|+.++. ..|.+ |+.+.+|.|||||.|. ++++++.++ ..
T Consensus 333 ~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-~~era~~~~~~ 411 (577)
T COG0018 333 GFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AGERAPEEMEE 411 (577)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-HHHHhhhHhhh
Confidence 666664 6999987544444666788998774 77865 5667789999999997 688887766 22
Q ss_pred -------------HHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHH
Q psy16872 337 -------------PNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371 (605)
Q Consensus 337 -------------PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~ 371 (605)
-.|++.++.... .++.-+|+++++.+-
T Consensus 412 ~~~~~~~iA~~vgi~Avry~~l~~~--------~~~~~~Fd~d~~lsf 451 (577)
T COG0018 412 KEEKNEEIAEVVGIDAVRYADLSRS--------RDKDYVFDWDKALSF 451 (577)
T ss_pred hhhhhHHHHHHhhhhhHHHHHHhcC--------CCCCcEeeHHHHHhc
Confidence 568888887754 367889999999993
|
|
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=124.42 Aligned_cols=94 Identities=23% Similarity=0.357 Sum_probs=68.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCC-------------CcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTR-------------FVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L~wlGl~~D 136 (605)
.|+|||.+||||+|+.+...++||.. ...|+.-+||.+.+- ..+.+.+.+.++|+.||+..|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 36999999999999999998888863 346677778876432 257888999999999999877
Q ss_pred CCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee-----eCC
Q psy16872 137 ESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK-----CFC 175 (605)
Q Consensus 137 e~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-----Cfc 175 (605)
-.+ ++..+ ++.+.-+....+|.++|.+|. +||
T Consensus 88 ~~~-------~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 88 WRR-------EFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred ccc-------ccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 422 11221 222333444559999999996 677
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=128.46 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcC-CcceEE--cCCCCcccHHHHHHHHHHcCCCCC----cEEEec--ceecCCC
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHM-NISHVL--RGVEWQISTTKHILIYKAFGWTPP----KFAHLP--LLLNLNG 315 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m-~ITHVI--RG~d~l~stpkqi~ly~alG~~~P----~f~H~p--lil~~dg 315 (605)
.|.||+||||.+||. +|...+-+.. +.+++| -|.||..--++-..+.++|||..+ ..-|+. |++..+|
T Consensus 297 ~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g 376 (576)
T PLN02286 297 IPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG 376 (576)
T ss_pred CceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC
Confidence 378999999999995 4444444433 455554 599998755555677788998633 577866 5666899
Q ss_pred ccccccCCC-CChHHHHHcC----------------------------CCHHHHHHHHHHhcCCCCCCCCCCccccCCHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSE----------------------------FLPNALINFVTNFGGGFHDHQRTSKSQLFSMK 366 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G----------------------------~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~e 366 (605)
+|||||.|. ++++++.++. +--.|++.+..... ..+.-.|+++
T Consensus 377 ~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~--------~~~~~~Fd~d 448 (576)
T PLN02286 377 KRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNN--------RLTNYTFSFD 448 (576)
T ss_pred CcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcC--------CCCCCccCHH
Confidence 999999997 6888887741 11367777775543 3567889999
Q ss_pred HHHHH
Q psy16872 367 DLVEK 371 (605)
Q Consensus 367 eli~~ 371 (605)
.+.+-
T Consensus 449 ~~l~~ 453 (576)
T PLN02286 449 QMLDL 453 (576)
T ss_pred HHHhh
Confidence 98883
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.9e-10 Score=117.96 Aligned_cols=234 Identities=18% Similarity=0.233 Sum_probs=136.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCC------------------------------cHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRF------------------------------VPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~------------------------------~~~~ 120 (605)
.+|||.+||||+|+.+..+.+||.. .-.|+.-.||-|+-|. .+.+
T Consensus 27 i~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~~~~d~~ 106 (353)
T cd00674 27 ISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCESYAEHF 106 (353)
T ss_pred CCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCHHHHHHH
Confidence 4899999999999999988888863 4588889999987554 3466
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCcccccccH--HHHHHHHHH-HHHCCCEeeeCCCHHHHHHHHHHHHhCCCCC--C
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL--ALYQKEVQT-LLHNGSAYKCFCSDSRLNLIRKDAVKSGLVP--K 195 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~--~~Y~~~a~~-Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~--~ 195 (605)
.+.+.+.|+.|||++|- |++++-. ..|.+.+.. |.+.+... +-|...+....+.+=.| -
T Consensus 107 ~~~f~~~l~~lgi~~d~----------~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p 170 (353)
T cd00674 107 ERPFEESLEKLGIEVEF----------ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMP 170 (353)
T ss_pred HHHHHHHHHHcCCeeee----------eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeee
Confidence 77788888889998873 3333322 245444443 33333321 22222221111000011 1
Q ss_pred CCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee-eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCc
Q psy16872 196 YDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI-SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNI 274 (605)
Q Consensus 196 Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i-~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~I 274 (605)
+...|..++ ..++-+....+.+.+.+. .|.. ..+ +.+..|--.|-.-=+..=...||
T Consensus 171 ~c~~cg~~~------------~~v~~~d~~~~~v~y~c~-cG~~g~~~---------~~~g~~KL~Wr~dW~~rW~~l~V 228 (353)
T cd00674 171 YCEKCGKDT------------TTVEAYDAKAGTVTYKCE-CGHEETVD---------IRTGRGKLTWRVDWPMRWAILGV 228 (353)
T ss_pred ecCCcCcce------------eEEEEEeCCCCeEEEEcC-CCCEEEEe---------ecCCCcccCCCCCchhhhhhcCC
Confidence 112343222 112222222223333331 1211 000 11111221111100111123567
Q ss_pred ceEEcCCCCccc---HHHHHHHHH-HcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 275 SHVLRGVEWQIS---TTKHILIYK-AFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 275 THVIRG~d~l~s---tpkqi~ly~-alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+-=+=|.||..+ -+.-..+.+ +||+++|......+++..+|.|||||+|+ +++.++.+. +.|++++.|++...
T Consensus 229 d~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~ 306 (353)
T cd00674 229 DFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRK 306 (353)
T ss_pred CEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCC
Confidence 766779999877 666677777 99999996666677777777799999998 799999998 99999999987754
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=119.25 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=139.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+-.|+.+|...+..|.+.++.|.|. +..+...+....+..++.++|++|+... .|+
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~-------i~~ 79 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKST-------IFF 79 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCE-------EEE
Confidence 79999999999999999999999999999999998 5567778888999999999999997653 478
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+.|.- +- .+.|.|+-.+++.. ..|.. +.+.+.
T Consensus 80 qS~~~~~~~l-~~-------~l~~~~~~~~l~r~----------~~fk~------------~~~~~~------------- 116 (280)
T cd00806 80 QSDVPEHYEL-AW-------LLSCVVTFGELERM----------TGFKD------------KSAQGE------------- 116 (280)
T ss_pred cCCcHHHHHH-HH-------HHhCcCCHHHHHhc----------cchhh------------hhccCC-------------
Confidence 9999865433 21 24599998777321 11210 000000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
+ . +=|..+|-.--+.|-.+.+.++|..|.|...+-..-.-+.+.+| +..|.
T Consensus 117 --------------~----~-----~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~ 173 (280)
T cd00806 117 --------------S----V-----NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPA 173 (280)
T ss_pred --------------C----C-----cchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCe
Confidence 0 0 01333444444444445566999999999877666677788888 78899
Q ss_pred EEEe--cceecCCCc--cccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 304 FAHL--PLLLNLNGS--KLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 304 f~H~--plil~~dg~--KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..|. |+|.+.+|. ||||+.+ .+.+.+ .|+.+..-+...
T Consensus 174 ~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d------~~~~i~~KI~~a 217 (280)
T cd00806 174 ALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD------SPKEIKKKIMKA 217 (280)
T ss_pred eeccCCCccccCCCCCCcccCCCCCCeEEeeC------CHHHHHHHHHhc
Confidence 9888 999998874 9999987 345542 788888888665
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-10 Score=121.96 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=67.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------C----------------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------R----------------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------R----------------------~~~~~~ 121 (605)
|+|||.|||||+++.+....+||.+ .|.-++.+-.+|.- + .+..+.
T Consensus 10 Py~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
T cd00817 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESG 89 (382)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 57777766666651 0 134577
Q ss_pred HHHHHHHHHcCCCCC--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPD--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++++.||+..| .... ....++.+.-+....+|.++|++|.
T Consensus 90 ~~~~~~~~~lgi~~Dw~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 90 GKIREQLKRLGASVDWSREYF-------TMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHhCceeecCCCcC-------CCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 889999999998544 5321 1233445566777789999999997
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=116.89 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=68.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccC----CCCC--------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIED----TDQT--------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiED----TD~~--------------------------R~~~~~ 120 (605)
|+|||.+||||+|+.++...++|.+ .| .|+--+|| |+.+ .....+
T Consensus 10 P~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T cd00818 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRY 89 (338)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHH
Confidence 6999999999999999999988854 34 44445555 3210 123467
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.+.++|+.||+ +||.... ....++.+.-++...+|.++|++|.
T Consensus 90 ~~~~~~~~~~lgi~~~~~~~~~-------T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 90 VDEQEEQFQRLGVWVDWENPYK-------TMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHhCceecCCCCeE-------CCCHHHHHHHHHHHHHHHHCCCEec
Confidence 7899999999999 8886421 1345788888999999999999996
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.2e-09 Score=110.91 Aligned_cols=86 Identities=24% Similarity=0.429 Sum_probs=56.5
Q ss_pred CCcEEEecCCcccchh---hhhhhhh-cCCcceEE--cCCCCcccHHHHHHHHHHcCCC--CCcEEEec--ceecCCCc-
Q psy16872 248 GDPVIIKSDGFPTYHF---ANVVDDH-HMNISHVL--RGVEWQISTTKHILIYKAFGWT--PPKFAHLP--LLLNLNGS- 316 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~f---A~vVDD~-~m~ITHVI--RG~d~l~stpkqi~ly~alG~~--~P~f~H~p--lil~~dg~- 316 (605)
.|.||+||||.+||.. |...+=+ ..+.+-+| -|.||..--.+-..+.++||+. .....|++ +++.++|+
T Consensus 208 k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~ 287 (354)
T PF00750_consen 208 KDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKV 287 (354)
T ss_dssp S-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEE
T ss_pred CcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCc
Confidence 4789999999999963 3333322 23344443 5888875433334677889984 34677865 66789998
Q ss_pred cccccCCC-CChHHHHHc
Q psy16872 317 KLSKRQGD-MSVEAIRNS 333 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~ 333 (605)
|||||+|. ++++++.++
T Consensus 288 ~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 288 KMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp SS-TTTTSSTBHHHHHHH
T ss_pred cccCCCCCceEHHHHHHH
Confidence 99999997 689998886
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=112.21 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=66.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC-----------------CC------------CCcHHHHHH
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD-----------------QT------------RFVPEAVEK 123 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD-----------------~~------------R~~~~~~~~ 123 (605)
+|+|||.|||||+++.+....+||-+ .|.-++.+-.+| +. ..+.++.+.
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 125 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999964 687777655444 22 134568899
Q ss_pred HHHHHHHcCCCCC--CCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 124 LEQDLKWIGVVPD--ESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 124 I~~~L~wlGl~~D--e~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|.++++.||+..| .. |+.+ ++.+.-+....+|.++|.+|+
T Consensus 126 ~~~~~~~lg~s~Dw~~~---------~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 126 FRELWRRLGLSVDWSLE---------YQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHhCeeeccCCC---------cccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 9999999998544 42 2222 344455667778999999997
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-07 Score=109.53 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=67.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC------------------C--------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT------------------R--------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~------------------R--------------~~~~~~ 121 (605)
|++||.|||||+++.+.-..+||-+ .|.-++.+-.+|.. + .+.++.
T Consensus 42 Py~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~ 121 (861)
T TIGR00422 42 PNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESG 121 (861)
T ss_pred CCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68888888777731 1 145678
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.++.||+..|-. .+|+.. ++.+.-+....+|.++|..|+
T Consensus 122 ~~~~~~~~~lG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 122 GTIKNQIKRLGASLDWS-------RERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHhCeeeecC-------CCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 89999999999655432 123333 334455667778999999997
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-07 Score=109.09 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=67.1
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC------------------CC--------------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT------------------RF--------------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~------------------R~--------------~~~~~ 121 (605)
|++||.|||||+++.+.-..+||-+ .|.-+|.+-.||.. +. +.++.
T Consensus 45 P~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~ 124 (874)
T PRK05729 45 PNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESG 124 (874)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 68888877777742 10 45678
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.++.||+..|-.- +|+.. ++...-+....+|.++|..|+
T Consensus 125 ~~~~~~~~~lG~s~Dw~r-------~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 125 GTITNQLRRLGASCDWSR-------ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHhCcceecCC-------CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 999999999996544210 23333 333445667778999999997
|
|
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=96.72 Aligned_cols=261 Identities=21% Similarity=0.298 Sum_probs=149.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------CCCcHHHHHHHHHHHHH----cCCCCCCC
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------TRFVPEAVEKLEQDLKW----IGVVPDES 138 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------~R~~~~~~~~I~~~L~w----lGl~~De~ 138 (605)
+||-..||||+.++|....+||.. .|.-+.=+..||. .|+.++..+.|-+.+.. +||.++..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 899999999999999999999975 5887777888884 25677777777766654 59999876
Q ss_pred ccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHh
Q psy16872 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLK 213 (605)
Q Consensus 139 p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~ 213 (605)
... ....+...-+++=..+.++|..|. -||-.+|--.--.+..+ .|..+|..-+ |.
T Consensus 129 IRT-------TdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k---~p~~~gk~vs---------mE 189 (578)
T KOG0436|consen 129 IRT-------TDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK---NPCPPGKVVS---------ME 189 (578)
T ss_pred eec-------CCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc---CCCCCCceee---------ec
Confidence 542 233566777888888999999996 12322211000000111 1322331111 22
Q ss_pred cCCCceEE------EEcCCCccceeccccceeeec------------CCCCCCCcEEEec-----CCccc--------ch
Q psy16872 214 ENSKYCIR------FKLTNHTESWQDLVYGDISYN------------VFHNEGDPVIIKS-----DGFPT--------YH 262 (605)
Q Consensus 214 ~g~~~~iR------~k~~~~~~~~~D~v~G~i~~~------------~~~~~~D~Vi~ks-----DG~Pt--------Y~ 262 (605)
.|.+.++| |++..-.-...|.+++.-.|- ....+.|+-|-|. -|.|+ |.
T Consensus 190 sg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYV 269 (578)
T KOG0436|consen 190 SGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYV 269 (578)
T ss_pred cCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEE
Confidence 34444444 222110111122222211100 0111234433331 12221 11
Q ss_pred h-------hhhhh-h------------hcCCcceEEcCCCCcccHHHHHHHHHH----cCCCCCc--EEEecceecCCCc
Q psy16872 263 F-------ANVVD-D------------HHMNISHVLRGVEWQISTTKHILIYKA----FGWTPPK--FAHLPLLLNLNGS 316 (605)
Q Consensus 263 f-------A~vVD-D------------~~m~ITHVIRG~d~l~stpkqi~ly~a----lG~~~P~--f~H~plil~~dg~ 316 (605)
+ -.|+. + .--.-.||| |.|.+- .|..-+.| -|.++|+ +.|-= ...+|.
T Consensus 270 WfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvI-GKDIlr---FHavYWPafLmaAGlplP~~I~vHgh--wt~ngm 343 (578)
T KOG0436|consen 270 WFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVI-GKDILR---FHAVYWPAFLMAAGLPLPKMIFVHGH--WTKNGM 343 (578)
T ss_pred eHHHHhhHHHhhcCCchhccccceeecCCCceeeeh-hhhhhh---hhhhhhHHHHHhcCCCCccEEEEeee--eeecce
Confidence 1 11111 0 001234888 888763 34333333 4888884 55543 346899
Q ss_pred cccccCCCC-ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 KLSKRQGDM-SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+-|++ .-.++.+. |.+++++.|+..-| . ..++..|+.+++++
T Consensus 344 KMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~--~-----l~~Dgdy~eekl~k 390 (578)
T KOG0436|consen 344 KMSKSLGNVVDPFELVQK-YGVDAVRYFLLREG--E-----LGNDGDYSEEKLIK 390 (578)
T ss_pred ecchhhccccCHHHHHHH-hCccceeeEeeecc--c-----cCCCCCccHHHHHH
Confidence 999999984 55666666 89999999998887 2 35677899999998
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=100.33 Aligned_cols=230 Identities=18% Similarity=0.259 Sum_probs=101.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCCCcH-------------------------------HH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTRFVP-------------------------------EA 120 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R~~~-------------------------------~~ 120 (605)
+|||..||||+|-.+-.++.+|.. .-+||+=-||-|+=|.+| .+
T Consensus 32 sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~~SyaeH~ 111 (360)
T PF01921_consen 32 SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCHESYAEHF 111 (360)
T ss_dssp --SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSSSCHHHHH
T ss_pred CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCCccHHHHH
Confidence 999999999999999999988874 248999999999877543 45
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCcccccccH--HHHHHHHHHHHHCCCEeeeCCCHHHHHH----HHHHHHhCCCCC
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL--ALYQKEVQTLLHNGSAYKCFCSDSRLNL----IRKDAVKSGLVP 194 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~--~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~----~r~~~~~~~~~~ 194 (605)
...+.+.|+.+|++++- ++|++.. ..|.+.+...+++ .+++.+ .|.+.....=.|
T Consensus 112 ~~~~~~~L~~~gie~e~----------~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~~~~~~~~y~P 172 (360)
T PF01921_consen 112 NAPFEEFLDEFGIEYEF----------ISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYRGRERPETYSP 172 (360)
T ss_dssp HHHHHHHHHTTT---EE----------EECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHHHHT--TT--S
T ss_pred HHHHHHHHHHcCCceEE----------EeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhcCcCCCCCeee
Confidence 55556666666665522 3333322 1344444444443 223322 111111100001
Q ss_pred --CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee-eecCCCCCCCcEEEecCCcccchhhhhhhhhc
Q psy16872 195 --KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI-SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH 271 (605)
Q Consensus 195 --~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i-~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~ 271 (605)
-+...|.... ...++.+....+.+.+.+.-.|.. ..+.. ..+|-..|-.-=+.-=..
T Consensus 173 f~piC~~cGri~-----------tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~---------~g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 173 FLPICEKCGRID-----------TTEVTEYDPEGGTVTYRCEECGHEGEVDIT---------GGNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp EEEEETTTEE-------------EEEEEEE--SSSEEEEE--TTS---EEETT---------TT-EEE-HHHHHHHHHHH
T ss_pred eeeeccccCCcc-----------cceeeEeecCCCEEEEEecCCCCEEEEecC---------CCcccccCCCcChhhhhh
Confidence 1112332210 012233332334455555443432 11110 111222222111111123
Q ss_pred CCcceEEcCCCCcc---cHHHHHHHH-HHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQI---STTKHILIY-KAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~---stpkqi~ly-~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.||+-=-=|.||.+ |...-..|. +.||+++|...-.-+++...|.||||++|. +|+++..+- +.||.|+.|++.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT-S-HHHHHHHHHC
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcc
Confidence 56665567999999 888888888 789999998777778888888899999998 699999887 788888888765
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.3e-06 Score=88.52 Aligned_cols=189 Identities=19% Similarity=0.260 Sum_probs=117.5
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC---------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT---------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT---------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.+||||.-+++.+|..- +.|.+.++=|-|- |++ ......+.+..++-.+|++++... -
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~-------i 80 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPD-ALRKAREELAADILAVGLDPKKTF-------I 80 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHH-HHHHHHHHHHHHHHHhCcChhheE-------E
Confidence 899999999999999999877 5666655444442 222 234555666777888999998764 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
|+||+-.+ |.+.+-.| -|.+|-.+++. .+.|..+ + .+ .
T Consensus 81 f~qS~~~e-~~el~~~l-------~~~~t~~~l~r----------~~~~k~k----~---------~~----------~- 118 (328)
T TIGR00233 81 FLQSDYPE-HYELAWLL-------SCQVTFGELKR----------MTQFKDK----S---------QA----------E- 118 (328)
T ss_pred EEcCCcHH-HHHHHHHH-------HccCCHHHHHh----------ccCcchh----c---------cC----------C-
Confidence 88999874 33333333 37788665531 1122110 0 00 0
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~ 301 (605)
+. +=|.-+|-.--+.|-.+.+.++|.-|.|....--.-.-+.+.|| +..
T Consensus 119 ----------------~~---------~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~ 173 (328)
T TIGR00233 119 ----------------NV---------PIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPK 173 (328)
T ss_pred ----------------CC---------CchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCC
Confidence 00 11333333334444557788899999998632221223445677 777
Q ss_pred CcEEEe---cceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PKFAHL---PLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~f~H~---plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|...|. |-|.+.+|+||||+.++ +.|.+ .|+.+..-+...
T Consensus 174 P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~KI~~a 218 (328)
T TIGR00233 174 PESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKKKIRKA 218 (328)
T ss_pred ChhhhccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHHHHHhc
Confidence 877664 55778888999999985 44432 788888888764
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=86.74 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCC----C---CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQ----T---RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~----~---R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+- ++.+|..-...|...++-|-|--. . .........+..++-.+|++++... -|+
T Consensus 74 ~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~-------i~~ 145 (368)
T PRK12285 74 MPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE-------IYF 145 (368)
T ss_pred CCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------EEE
Confidence 899999999986 566666656667777776666421 1 1233444457778889999998754 389
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+ |.+.+-.| -|.+|-.++..+ .+|.
T Consensus 146 qS~~~~-~~~l~~~l-------~~~~t~~~l~r~----------~~f~-------------------------------- 175 (368)
T PRK12285 146 QSENIK-VYDLAFEL-------AKKVNFSELKAI----------YGFT-------------------------------- 175 (368)
T ss_pred CCchHH-HHHHHHHH-------HhhCcHHHHHHh----------hCCC--------------------------------
Confidence 999876 44454444 355665555210 0110
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhc------CCcceEEcCCCCcccHHHHHHHHHHc----CC
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHH------MNISHVLRGVEWQISTTKHILIYKAF----GW 299 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~------m~ITHVIRG~d~l~stpkqi~ly~al----G~ 299 (605)
| .. +=|..+|-.--+.|-.+ ..-++|.-|.|....--.-.-+.+.| |+
T Consensus 176 ---~----------~~---------~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf 233 (368)
T PRK12285 176 ---G----------ET---------NIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGF 233 (368)
T ss_pred ---C----------CC---------chhhhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCC
Confidence 0 00 00122222222222212 35578889999763222222445567 99
Q ss_pred CCCcEEEecceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 300 TPPKFAHLPLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 300 ~~P~f~H~plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..|.-.|.+++.+.+|+||||+... +.+.+ .|+.+..-+..
T Consensus 234 ~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 234 IKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred CCchhHhhhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 9998888899889999999999854 44443 78899888876
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=83.95 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=112.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH-cCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKS-HNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~-~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.+||||.-+|+-+|..-.+ +|.++++=|=|. |++. ..+.......++-.+|++++... -|
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~-l~~~~~~~~~~~lA~GlDP~k~~-------if 82 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQ-FRSYTREVAATWLSLGLDPEDVI-------FY 82 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHH-HHHHHHHHHHHHhheeecccceE-------EE
Confidence 89999999999999999976644 454433323332 2222 23344446667778899998754 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+--+.+ +.+- ++ .|.++-.+|+.+ +.|.. +....... .+
T Consensus 83 ~qS~v~~~~-eL~~-il------~~~t~~g~L~R~----------~~~K~------------k~~~~~~~--~~------ 124 (332)
T PRK12556 83 RQSDVPEIF-ELAW-IL------SCLTPKGLMNRA----------HAYKA------------KVDQNKEA--GL------ 124 (332)
T ss_pred ECCCchHHH-HHHH-HH------HccchHHHHHhc----------cHHHH------------HHhhhhhh--cc------
Confidence 999975543 2222 22 377777766432 11100 00000000 00
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCC
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPP 302 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P 302 (605)
.+.+ . . +=|.-+|=.--+.|-.+.+.+||.-|+|....--.-.-+.+.|| +..|
T Consensus 125 -~~~~----------~----~-----~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P 184 (332)
T PRK12556 125 -DLDA----------G----V-----NMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP 184 (332)
T ss_pred -ccCC----------C----C-----cchhhhchHHHhhhhhhccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc
Confidence 0000 0 0 01334443334445556778999999998632111123334455 5667
Q ss_pred cEE---EecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 303 KFA---HLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 303 ~f~---H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
... |.+++.+.+|+||||+.++ +.+. =.|+.+..-+...
T Consensus 185 ~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~------D~p~~I~kKI~ka 227 (332)
T PRK12556 185 EYVIQEEGAILPGLDGRKMSKSYGNVIPLF------AEQEKLRKLIFKI 227 (332)
T ss_pred eeccccccccccCCCCCCCCCCCCCccccc------CCHHHHHHHHHHh
Confidence 654 7888889999999999874 2332 3688887777554
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=77.65 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=120.0
Q ss_pred eeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CC--CCCcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 72 LKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQ--TRFVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~--~R~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
.+-|- .|||.+||||+- ++.+|..-...|.+.++=|-|. |+ ..........+..++..+|++++...
T Consensus 31 ~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~--- 106 (329)
T PRK08560 31 PKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE--- 106 (329)
T ss_pred CEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE---
Confidence 34453 899999999976 7777777766677766655553 21 12344555667888888999987643
Q ss_pred CccCcccccccHHH--HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceE
Q psy16872 143 GNYGPYLQSKRLAL--YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220 (605)
Q Consensus 143 g~~gpy~QSer~~~--Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~i 220 (605)
-++||+-... |...+-.| -|.++-.++.... +. + |.
T Consensus 107 ----i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~--~~-------~------------------~~---- 144 (329)
T PRK08560 107 ----FVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSM--TI-------M------------------GR---- 144 (329)
T ss_pred ----EEecchhhccchHHHHHHHH-------HhhccHHHHHHhh--hh-------h------------------cc----
Confidence 2688875432 22222222 2666655443110 00 0 00
Q ss_pred EEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC
Q psy16872 221 RFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT 300 (605)
Q Consensus 221 R~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~ 300 (605)
. .++ -+=|.-+|-.--+.|-...+.++|+-|.|...+--.=.-+.+.+|..
T Consensus 145 --~-----------------------~~~----~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~ 195 (329)
T PRK08560 145 --R-----------------------MEE----PDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYK 195 (329)
T ss_pred --c-----------------------CCC----CCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCC
Confidence 0 000 01134445455556666778999999999764332223455678888
Q ss_pred CCcEEEecceecCCCc--cccccC-C-CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 301 PPKFAHLPLLLNLNGS--KLSKRQ-G-DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 301 ~P~f~H~plil~~dg~--KLSKR~-g-~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.-.+.|+|.+.+|. ||||+. + .+.+. =.|+.+..=+..
T Consensus 196 ~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~------D~~~~I~~KI~k 239 (329)
T PRK08560 196 KPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVH------DSPEEIRRKIKK 239 (329)
T ss_pred CceEEEcCccCCCCCCCCCCcCCCCCCeeccc------CCHHHHHHHHHh
Confidence 8988899999999987 999998 3 34443 367888887766
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=80.94 Aligned_cols=196 Identities=19% Similarity=0.250 Sum_probs=120.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCC----CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQT----RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~----R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.|||||.-.|+.||.......+....=|-|- .+. .....++..+..++=.+||+++... -|
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~-------if 85 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST-------IF 85 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE-------EE
Confidence 89999999999999999999887765666555553 111 3356677778888888999999865 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
.||+..+ +.+.+-.| -|.-+-.+|+.+ +.|...-. +.+. .++.
T Consensus 86 ~QS~v~e-~~eLa~~l-------~~~~~~gel~r~----------~~fKdk~~-----------~~~~------~~~~-- 128 (314)
T COG0180 86 LQSEVPE-HAELAWLL-------SCVTNFGELERM----------TQFKDKSA-----------KKGE------SIPI-- 128 (314)
T ss_pred EccCchH-HHHHHHHH-------HccCcHHHHHhh----------cCcchhhh-----------cccc------cccc--
Confidence 9999988 44554333 377776666432 22311000 0000 1111
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCC
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPP 302 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P 302 (605)
|-+ +||.-.- .|--+-+-++|=-|+|...---...-|.+.|+ +..|
T Consensus 129 --------Gl~-----------------~YPvlqA---ADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P 180 (314)
T COG0180 129 --------GLL-----------------TYPVLQA---ADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP 180 (314)
T ss_pred --------cch-----------------hccHHHH---HHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc
Confidence 111 1232222 22222244777789998743233334556676 7777
Q ss_pred cEEEec--ceecCCC-ccccccCCCCChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 303 KFAHLP--LLLNLNG-SKLSKRQGDMSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 303 ~f~H~p--lil~~dg-~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
...+.- .+.+.+| +||||+.++.+| .|. =.|+.+..-+...-
T Consensus 181 ~~~~~~~~~i~gL~g~~KMSkS~~ns~I-~L~---D~~~~i~kKI~~~~ 225 (314)
T COG0180 181 EALISKVARLPGLDGPGKMSKSDPNSAI-FLL---DDPKTIRKKIKKAA 225 (314)
T ss_pred cccccCCCcccCCCCCCcccccCCCCee-ecc---CCHHHHHHHHHHhc
Confidence 655544 7788888 899999998333 121 36788888876653
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.9e-05 Score=77.27 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHHcC-CCCCcEEEecceecCCCccccccCCCC-ChHHHHHcCCCHHHHHHHHHHh
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKAFG-WTPPKFAHLPLLLNLNGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~alG-~~~P~f~H~plil~~dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+.++|+-|.|...+--.=+-+.+.++ ++.|.-.+.|+|.+.+|.||||+.+.. ++..+ -=.|+.+..++...
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~---~dsp~~i~~ki~~a 226 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTE---KTSPYEFYQFWINA 226 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCcccccc---CCCHHHHHHHHHcc
Confidence 456999999998865554455666674 678888888999999999999998764 22111 13688888888653
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.6e-05 Score=79.48 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=113.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.+||||.-+++.+|..-...+..+++--|+. |++ ...+....+..++-.+|++++... -|+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~-~i~~~~~~~~~~~lA~G~dp~k~~-------i~~ 81 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPE-KIRRNILEVALDYLAVGIDPAKST-------IFI 81 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHH-HHHHHHHHHHHHHHHhCcChhHeE-------EEE
Confidence 79999999999999999977776666666543333 222 233444556667778999987643 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+.+ +... .+.|.++-.++. |..+. .+++. ++...
T Consensus 82 qS~~~e~~-~l~~-------~l~~~~~~~~l~--r~~~~--------------------k~~~~-------~~~~~---- 120 (333)
T PRK12282 82 QSQIPELA-ELTM-------YYMNLVTVARLE--RNPTV--------------------KTEIA-------QKGFG---- 120 (333)
T ss_pred CCcchHHH-HHHH-------HHHhhchHHHHh--hchHH--------------------HHHHh-------ccCCC----
Confidence 99876543 2221 145777766553 11110 00000 00000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC--CCCCcEE--
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG--WTPPKFA-- 305 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG--~~~P~f~-- 305 (605)
| + . .=|..+|=.--+.|-.+.+.++|.-|.|....--.-.-+.+.|| +..|.|.
T Consensus 121 ---~----------~----~-----~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p 178 (333)
T PRK12282 121 ---R----------S----I-----PAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP 178 (333)
T ss_pred ---C----------C----C-----cchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc
Confidence 0 0 0 00444444445555567789999999998632211223344566 4333333
Q ss_pred -----EecceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 306 -----HLPLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 306 -----H~plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
|.|+|.+.+| +||||+.++ +.+.+ .|+.+..-+..
T Consensus 179 ~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D------~pe~I~kKI~~ 220 (333)
T PRK12282 179 EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD------DADTIKKKVMS 220 (333)
T ss_pred hhcccCCCcccCCCCCCcCCCCCCCeeeeeC------CHHHHHHHHHh
Confidence 5678888887 799999874 33332 78888888866
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.6e-05 Score=78.00 Aligned_cols=196 Identities=22% Similarity=0.192 Sum_probs=118.7
Q ss_pred CCCC-cCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC-----C------CcHHHHHHHHHHHHHcCCC--CCC
Q psy16872 77 TSTG-LLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT-----R------FVPEAVEKLEQDLKWIGVV--PDE 137 (605)
Q Consensus 77 ~PtG-~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~-----R------~~~~~~~~I~~~L~wlGl~--~De 137 (605)
.||| .+||||+-.++ ++..-...|.+.++=|-|- |+. | ......+.+..++..+|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 7999 99999999765 4444444565665555551 332 2 2345566788888999986 443
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSK 217 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~ 217 (605)
. --+.||+-.+. .+...++. +-|+|+-.++... .+- .++...+
T Consensus 87 ~-------~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~--~~~--------------------k~r~~~~-- 129 (269)
T cd00805 87 A-------KFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRR--DAV--------------------KVRLEEE-- 129 (269)
T ss_pred e-------EEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHH--HHH--------------------HHHHhcC--
Confidence 2 24788876554 12222221 3477887666321 111 0111000
Q ss_pred ceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc
Q psy16872 218 YCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF 297 (605)
Q Consensus 218 ~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al 297 (605)
.+ . +=|.-+|-.--+.|=...+.++|+-|.|...+--.-.-+.+.+
T Consensus 130 --------~~---------------------~-----~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~ 175 (269)
T cd00805 130 --------EG---------------------I-----SFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKL 175 (269)
T ss_pred --------CC---------------------C-----cHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHh
Confidence 00 0 0112333333334444566699999999987766666777889
Q ss_pred CCCCCcEEEecceecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 GWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G~~~P~f~H~plil~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
++..|.-.|.|++.+.+|+||||+.++..-- +. ==.|+.+..++...
T Consensus 176 ~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~i-~l--~dsp~~i~~Ki~~a 222 (269)
T cd00805 176 GYKKVVGLTTPLLTGLDGGKMSKSEGNAIWD-PV--LDSPYDVYQKIRNA 222 (269)
T ss_pred CCCCcEEEeeccccCCCCCcccCCCCCcccc-cC--CCCHHHHHHHHHcC
Confidence 9988888899999999999999998764211 11 13688888888653
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=88.77 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=105.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------------------------------R~~~~~ 120 (605)
|+|||.||+||+++..+-..+||-+ .|.-+++.=..|-. ..+..+
T Consensus 50 Py~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~ 129 (975)
T PRK06039 50 PTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRY 129 (975)
T ss_pred CCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68777766555420 124567
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.+.++.|| ++||.. |+..+ +.+.-+....+|.++|.+|+..- +-.|
T Consensus 130 ~~~~~~~~~rlG~~~Dw~~~---------y~T~d~~y~~~v~~~F~~l~~kGliyr~~~-----------------~v~w 183 (975)
T PRK06039 130 TDEWEEYTERLGRWVDFDNP---------YKTLDNEYMESVWWALKQLYDKGLLYKGYR-----------------VVPY 183 (975)
T ss_pred HHHHHHHHHHhCceeecCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEecce-----------------eeee
Confidence 888999999999 678763 44433 33334455669999999997421 1245
Q ss_pred CCcCc-CCCHHHHH--HHHhcCCCceEEEEcCC-Cc------cceeccccceeeecCCCCCCCcEEEecCCcccchhh
Q psy16872 197 DNKCR-NLTQEQID--EKLKENSKYCIRFKLTN-HT------ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFA 264 (605)
Q Consensus 197 ~~~cr-~ls~~e~~--~~~~~g~~~~iR~k~~~-~~------~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA 264 (605)
+-.|. .|+..|+. -+...+....|+|++.. .. ++=-..+.|.+....+.. .|.++.+.+| ..|-+|
T Consensus 184 cp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~-~~Y~~~~~~~-~~yi~a 259 (975)
T PRK06039 184 CPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPD-IDYVKVEGGG-EVYILA 259 (975)
T ss_pred cCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCC-CceEEEecCC-eEEEEh
Confidence 55674 48888886 23445667788998842 11 112245566654444433 4677777665 455433
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.7e-05 Score=89.69 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=65.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------------------------------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------------------------------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------------------------------R~~~~~ 120 (605)
|+|||.||+||+++.+.-..+||.+ .|.-++.+-..|.. ..+..+
T Consensus 45 Py~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~ 124 (861)
T TIGR00392 45 PYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQ 124 (861)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHH
Confidence 6999999999999999999999964 68877765554421 123457
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C 173 (605)
++.+.+.|+.||+ +||.. |... ++.+.-+....+|.++|.+|+.
T Consensus 125 ~~~~~~~~~~lG~~~dw~~~---------y~T~~p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 125 IEEQREQFQRLGVWGDWENP---------YKTMDPSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHhCceecCCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 8889999999999 78763 3333 2333335566789999999973
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.6e-05 Score=89.18 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=65.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------------CC-------CcHHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------------TR-------FVPEAVEKL 124 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------------~R-------~~~~~~~~I 124 (605)
|++||.|||||+++.+.-..++|.+ .|.-++.+=.+|- +. ...++.+.+
T Consensus 58 PyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~ 137 (912)
T PRK05743 58 PYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQ 137 (912)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 5877765544442 11 234567889
Q ss_pred HHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 125 EQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 125 ~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.++++.||+ +||.. |+.. ++...-+....+|.++|..|+
T Consensus 138 ~~~~~~lG~~~dw~~~---------~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 138 REDFKRLGVLGDWDNP---------YLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHhCCcccCCCC---------cCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999999999 88863 3332 333445667778999999997
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.1e-05 Score=89.67 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=67.3
Q ss_pred EecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCC
Q psy16872 74 HFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 74 ~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. ...+.++.+.+.+.|+.||+..
T Consensus 36 ~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~ 115 (842)
T TIGR00396 36 MFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSY 115 (842)
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 467999999999999999999999975 5887877776664 1124578899999999999755
Q ss_pred CCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 136 DESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|-.. +|..+ ++.+.-+....+|.++|.+|+
T Consensus 116 Dw~~-------~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 116 DWDR-------EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred cCCC-------CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 4221 13332 233333444569999999996
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0021 Score=70.07 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=55.2
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC-CCCcEEEecceecC-CC-ccccccCCC--CChHHHHH
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW-TPPKFAHLPLLLNL-NG-SKLSKRQGD--MSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~-~~P~f~H~plil~~-dg-~KLSKR~g~--~sv~~~r~ 332 (605)
..+|=.--+.|-...+.++|.-|.|...---.-.-+.+.+|. ..|...|.|+|.+. +| +||||+.++ +.+.+
T Consensus 195 ~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D--- 271 (383)
T PTZ00126 195 QILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED--- 271 (383)
T ss_pred hhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC---
Confidence 334444444555567888999899874110111234456885 46777789999998 56 699999865 44443
Q ss_pred cCCCHHHHHHHHHHh
Q psy16872 333 SEFLPNALINFVTNF 347 (605)
Q Consensus 333 ~G~~PeAl~nfla~l 347 (605)
.|+.+..-+...
T Consensus 272 ---spe~I~kKI~kA 283 (383)
T PTZ00126 272 ---SEEDVNRKIKKA 283 (383)
T ss_pred ---CHHHHHHHHHhC
Confidence 788999888763
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.9e-05 Score=89.44 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=69.5
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. .....++.+.|.+.|+.||+..|
T Consensus 40 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~D 119 (805)
T PRK00390 40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119 (805)
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 47999999999999999999999964 5887777666664 12356789999999999999544
Q ss_pred CCccCCCccCccc--ccccHHHHHHHHHHHHHCCCEee
Q psy16872 137 ESETVGGNYGPYL--QSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 137 e~p~~~g~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
-.. +|. ..++.+.-+....+|.++|.+|.
T Consensus 120 w~~-------~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 120 WSR-------EIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCC-------CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 211 122 22455666788889999999996
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00045 Score=75.92 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=114.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHH-cCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKS-HNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~-~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
+|||.+||||.-.|+-||+...+ .|.++++=|=| -|+++... ....+..++-.+||+++... -|
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~-~~~e~aa~~LA~GlDPek~~-------if 81 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQR-STLEIAATWLAAGLDPERVT-------FY 81 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHH-HHHHHHHHHHHhCCCccceE-------EE
Confidence 89999999999999999998864 34444332222 34444333 33446777788899998754 38
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+--+ +.+..--| .|.++-.+|+.+. .|. +........|..
T Consensus 82 ~QSdvpe-h~EL~wiL-------~~it~~g~L~Rm~----------q~K--------~k~~~~~~~g~~----------- 124 (431)
T PRK12284 82 RQSDIPE-IPELTWLL-------TCVAGKGLLNRAH----------AYK--------AAVDKNVAAGED----------- 124 (431)
T ss_pred ECCcchh-HHHHHHHH-------HhhhhHHHHHhhh----------HHH--------HHHHhhhccccC-----------
Confidence 9998654 33444333 3877777775431 110 000000000100
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHH----HHcC------
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIY----KAFG------ 298 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly----~alG------ 298 (605)
.++-+ +=|..+|=.--+.|-.+.+.+||--|+|-. +|+.|- +.|+
T Consensus 125 ------------------~~~~i---~~Gll~YPvLqAADILly~ad~VPVG~DQ~----qHlELaRdIA~rFN~~yg~~ 179 (431)
T PRK12284 125 ------------------PDAGV---TAGLFMYPVLMAADILMFNAHKVPVGRDQI----QHIEMARDIAQRFNHLYGGE 179 (431)
T ss_pred ------------------cccCc---chHHhhchHHHHhhhhhcCCCEEEEcchhH----HHHHHHHHHHHHHhhhcCCc
Confidence 00000 114555555555666677889999999986 344333 3343
Q ss_pred -CCCCc--E-EEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 299 -WTPPK--F-AHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 299 -~~~P~--f-~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
+..|+ . .|.+.|.+.+|+||||+.++ +.|. =.|+.|..-+...
T Consensus 180 ~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~------Ds~~~I~kKI~~A 227 (431)
T PRK12284 180 FFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLF------APREELKKAIFSI 227 (431)
T ss_pred ccCCCccccccccccccCCCCccccCCCCCEeeec------CCHHHHHHHHhcC
Confidence 22343 2 35678899999999999863 3332 2677787777654
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0006 Score=82.42 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=86.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-----------------------CC---------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-----------------------RF---------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-----------------------R~---------~~~~~ 121 (605)
|++||.||+||+++..+-..+||-+ .|.-++.+-.+|.. |+ +.++.
T Consensus 97 P~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~ 176 (958)
T PLN02943 97 PNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYG 176 (958)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 68888877777642 10 14567
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCC
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~ 197 (605)
+.|.+.++.||+ +|+.. |+.. ++...-+....+|.++|.+|+.. .+-.|+
T Consensus 177 ~~~~~~~~~lG~s~Dw~~~---------~~T~d~~~~~~v~~~F~~l~~~Gliyr~~-----------------~~V~wc 230 (958)
T PLN02943 177 GTITNQIKRLGASCDWSRE---------RFTLDEQLSRAVVEAFVRLHEKGLIYQGS-----------------YMVNWS 230 (958)
T ss_pred HHHHHHHHHhCcceecCCC---------cccCCHHHHHHHHHHHHHHHHCCCEEecC-----------------ceeccC
Confidence 899999999999 56542 3333 23344456667899999999731 122455
Q ss_pred CcCc-CCCHHHHHHHHhcCCCceEEEEc
Q psy16872 198 NKCR-NLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 198 ~~cr-~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
-.|. -|+..|++-....|.-+.|||++
T Consensus 231 p~~~Tals~~Evey~e~~~~~~~i~f~l 258 (958)
T PLN02943 231 PNLQTAVSDLEVEYSEEPGTLYYIKYRV 258 (958)
T ss_pred CCCCCCcCHHHhhcccccccEEEEEEEE
Confidence 5664 37888876544556556677776
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=88.22 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=70.0
Q ss_pred eEecCCCCc-CChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCC
Q psy16872 73 KHFLTSTGL-LHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 73 ~~fp~PtG~-LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl 133 (605)
..||+|||. |||||+++.+....+||-+ .|.-+|.+-.+|. .-.+.++++.+.+.|+.||+
T Consensus 116 ~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~ 195 (963)
T PLN02563 116 DMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGF 195 (963)
T ss_pred eCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCc
Confidence 356899997 9999999999999999965 6887777666662 22456888999999999995
Q ss_pred --CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 134 --VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 134 --~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+||.... ....++...-+....+|.++|.+|+
T Consensus 196 s~DW~r~~~-------T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 196 SYDWDREIS-------TTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred EeeCCCCee-------cCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 5554311 1223444555677889999999997
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=69.69 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CC---CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQ---TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~---~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+|||.+||||.-.++-||+ ..+.+++..+=|-|- ++ ..........+..++-.+|++++... -|.
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~-------if~ 81 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQAT-------LFI 81 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEE
Confidence 8999999999999998887 445566655444442 11 12334455567888889999998754 388
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHH
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLN 181 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~ 181 (605)
||+--+ |.+.+ -.+.|.++-.+|+
T Consensus 82 QS~v~e-h~eL~-------wil~~~t~~~~L~ 105 (398)
T PRK12283 82 QSKVPE-HAELH-------LLLSMITPLGWLE 105 (398)
T ss_pred CCCchH-HHHHH-------HHHHhhccHHHHH
Confidence 997742 22211 1234777765553
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00021 Score=86.68 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=69.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCCC---------------------------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQTR---------------------------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~R---------------------------------~~~~~ 120 (605)
|+|||.||+||+++.+.-..+||.+ .|.-++.+-.+|..= -+.++
T Consensus 69 P~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~ 148 (995)
T PTZ00419 69 PNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKH 148 (995)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 698888888887430 02577
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.|.+.|+.||+ +|+..-. ....++....+....+|.++|..|+
T Consensus 149 ~~~~~~~~~~lG~~~DW~~~~~-------T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 149 GNNICNQLRRLGSSLDWSREVF-------TMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHhCceeeCCCCcC-------cCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 8889999999995 5554311 1223455677788889999999997
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00026 Score=86.28 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=82.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC---------C------------------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT---------R------------------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~---------R------------------------~~~~~ 120 (605)
|++||.|||||+++.+.-..+||.+ .|.-++.+-.+|.- + .+.++
T Consensus 57 P~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~ 136 (1052)
T PRK14900 57 PNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQY 136 (1052)
T ss_pred CCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 58877777766631 1 12466
Q ss_pred HHHHHHHHHHcCCCCCCCccCCCccCccc--ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCC
Q psy16872 121 VEKLEQDLKWIGVVPDESETVGGNYGPYL--QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198 (605)
Q Consensus 121 ~~~I~~~L~wlGl~~De~p~~~g~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~ 198 (605)
.+.|.+.++.||+..|=.- +|+ ..++.+.-+....+|.++|..|+..- +-.|+-
T Consensus 137 ~~~~~~~~~~lG~s~Dw~~-------~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~-----------------~v~wcp 192 (1052)
T PRK14900 137 GSRIGEQHKALGASLDWQR-------ERFTMDEGLSRAVREVFVRLHEEGLIYREKK-----------------LINWCP 192 (1052)
T ss_pred HHHHHHHHHHhchheecCC-------CcCcCCHHHHHHHHHHHHHHHHCCCEEeccc-----------------eeccCC
Confidence 7889999999996544211 233 23455566777889999999997321 123555
Q ss_pred cCc-CCCHHHHHHHH-hcCCCceEEEEc
Q psy16872 199 KCR-NLTQEQIDEKL-KENSKYCIRFKL 224 (605)
Q Consensus 199 ~cr-~ls~~e~~~~~-~~g~~~~iR~k~ 224 (605)
.|. .|+..|++... ..|.-+.|+|.+
T Consensus 193 ~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l 220 (1052)
T PRK14900 193 DCRTALSDLEVEHEEAHQGELWSFAYPL 220 (1052)
T ss_pred CCCCCccHHHhcccCCCCCeEEEEEEEe
Confidence 553 36777764322 223333456665
|
|
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=74.86 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=122.8
Q ss_pred ceeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CC----CCCcHHHHHHHHHH--HHHcCCCCCC
Q psy16872 71 KLKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQ----TRFVPEAVEKLEQD--LKWIGVVPDE 137 (605)
Q Consensus 71 ~v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~----~R~~~~~~~~I~~~--L~wlGl~~De 137 (605)
..+-|- .|||.|||||+-. +.++..-...|.+.++=|-|- |+ .|......+.+..+ +-.+|++++.
T Consensus 5 ~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k 83 (292)
T PF00579_consen 5 PFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEK 83 (292)
T ss_dssp SEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTT
T ss_pred CcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 345554 8999999997764 455666666888877755443 22 34455566666666 6788999876
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCC
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSK 217 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~ 217 (605)
.. -+.||+-.+.. ++...|. |.++--++..+... .++..++..|+
T Consensus 84 ~~-------i~~~s~~~~~~-~~~~~l~-------~~~~~~~l~~~~~~-------------------~~~~~~~~~~~- 128 (292)
T PF00579_consen 84 TE-------IFRQSDWPEHM-ELWWFLS-------DVARLFSLNRMLRF-------------------KDVKKRLKNGE- 128 (292)
T ss_dssp EE-------EEEGHHHHCHH-HHHHHHH-------HHHBHHHHHHHHHH-------------------HHHHHHHSSTT-
T ss_pred eE-------EEeCCCccccc-chhhhhc-------ccccccchhhhhhh-------------------ccccccccccc-
Confidence 43 37899776555 5555554 44444444432210 11122222210
Q ss_pred ceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc
Q psy16872 218 YCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF 297 (605)
Q Consensus 218 ~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al 297 (605)
+ . +=|.-+|-.--+.|=...+.++|+-|.|...+---=.-+.+.+
T Consensus 129 ---------~-~-------------------------~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~ 173 (292)
T PF00579_consen 129 ---------G-I-------------------------SLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKF 173 (292)
T ss_dssp ---------T-S-------------------------BHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHH
T ss_pred ---------C-c-------------------------ceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhh
Confidence 0 0 0012233333345555677779999999886555445666778
Q ss_pred CCC----CCcEEEecceecCCCc-cccccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 GWT----PPKFAHLPLLLNLNGS-KLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G~~----~P~f~H~plil~~dg~-KLSKR~g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|.. .|...|.|++.+.+|. ||||++++.+|. +- =.|+.+...+...
T Consensus 174 ~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~-L~---d~~~~i~~Ki~~a 224 (292)
T PF00579_consen 174 NYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIF-LD---DSPEEIRKKIKKA 224 (292)
T ss_dssp THHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-B-TT---TTHHHHHHHHHHS
T ss_pred cccccccCchheeeccccccCCccccCccCCccEEE-Ee---ccchhHHHHHHHH
Confidence 887 8999999999999999 999999873331 11 2577888887664
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=84.60 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=63.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------------CC--------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------------TR--------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------------~R--------------~~~~~~ 121 (605)
|+|||.||+|||++...-..++|.+ .|.-++.+=..|- .+ ...+++
T Consensus 63 PyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i 142 (961)
T PRK13804 63 PYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWI 142 (961)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 5766654444331 11 234567
Q ss_pred HHHHHHHHHcCCC--CCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVV--PDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~--~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++++.||+. ||. ||... ++...-+....+|.++|.+|+
T Consensus 143 ~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 143 DVQREEFKRLGVLGDWDN---------PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999995 765 24433 233344556678999999997
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00032 Score=84.86 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=65.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C--------------CcHHHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R--------------FVPEAVEK 123 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R--------------~~~~~~~~ 123 (605)
|++||.||||||++.+.-..++|.+ .|.-++.+-.+|-. | ...++++.
T Consensus 41 Py~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~ 120 (974)
T PLN02843 41 PYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDT 120 (974)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999965 57777665555521 1 13456777
Q ss_pred HHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 124 LEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 124 I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.++.||+ +||.. |+.. ++...-.....+|.++|..|+
T Consensus 121 ~~~~~~~lG~~~Dw~~~---------y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 121 QRESFKRYGVWGDWENP---------YLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHhCCceecCCC---------CccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 8999999999 89863 3332 333444566778999999997
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=69.46 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=47.3
Q ss_pred ceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 275 SHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 275 THVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
++|=.|.|....--.-.-+.+.+|...|.+.|.+++.+.+| +||||+.++ +.+.+ .|+.+.+.+....
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A 292 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINKYA 292 (383)
T ss_pred ceeecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhcCC
Confidence 56667887432222223455778988899998777767666 699999975 45543 8999999997644
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00034 Score=85.84 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=87.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C-----------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R-----------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R-----------------~~~~~ 120 (605)
|++||.||+|||++..+-..++|.+ .|.-++++-.+|.- + .+.++
T Consensus 111 PyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~ 190 (1205)
T PTZ00427 111 PFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKY 190 (1205)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 69888888777721 0 13456
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.+.++.|| ++||.. |+.. ++.+.-+....+|.++|..|+-+ .+-.|
T Consensus 191 ~~~~~~~~~rlG~~iDw~~~---------y~T~d~~~~~~v~~~f~~L~ekGlIYr~~-----------------k~V~w 244 (1205)
T PTZ00427 191 SNEWVKTVERIGRWIDFKND---------YKTMDKTFMESVWWVFSELYKNNYVYKSF-----------------KVMPY 244 (1205)
T ss_pred HHHHHHHHHHhCcEEecCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEecc-----------------eeecc
Confidence 788899999999 899863 4443 34455566777999999999731 12245
Q ss_pred CCcCc-CCCHHHHH--HHHhcCCCceEEEEcC
Q psy16872 197 DNKCR-NLTQEQID--EKLKENSKYCIRFKLT 225 (605)
Q Consensus 197 ~~~cr-~ls~~e~~--~~~~~g~~~~iR~k~~ 225 (605)
+-.|. .|+..|+. -+...+....|+|++.
T Consensus 245 cp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~ 276 (1205)
T PTZ00427 245 SCKCNTPISNFELNLNYKDTPDPSIIISFVLC 276 (1205)
T ss_pred CCCCCCchhHHHhhcccccccCceEEEEeecc
Confidence 55664 47777763 2223344456777653
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=85.09 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=67.6
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE---ecc-------------CCCCCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL---RIE-------------DTDQTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL---RiE-------------DTD~~R~~~~~~~~I~~~L~wlGl 133 (605)
+-.||+|||.||+||+||+.....+||-+ +|.=+| =++ .+||.--+....+.+.+.|+.||+
T Consensus 39 l~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~ 118 (814)
T COG0495 39 LVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGF 118 (814)
T ss_pred EeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCC
Confidence 56779999999999999999999999964 465444 111 347777788999999999999986
Q ss_pred --CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 134 --VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 134 --~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
||+.......| ++..--+-...+|.++|.+|.
T Consensus 119 siDW~Ref~T~Dp-------~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 119 SIDWRREFATCDP-------EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred ccccccceecCCc-------cHHHHHHHHHHHHHHCCCEEe
Confidence 56554332222 222222344558999999996
|
|
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00018 Score=81.37 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=68.9
Q ss_pred CceeEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE----------ecc------CCCCCCCcHHHHHHHHHHHHHc
Q psy16872 70 LKLKHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL----------RIE------DTDQTRFVPEAVEKLEQDLKWI 131 (605)
Q Consensus 70 ~~v~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL----------RiE------DTD~~R~~~~~~~~I~~~L~wl 131 (605)
=++.+||+|||-|||||+|.+..+...||-+ +|-=++ =-| .++|.--+..-++.+.+.|..|
T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~l 139 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSL 139 (876)
T ss_pred eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHc
Confidence 3579999999999999999999999999965 454443 222 3455555678889999999999
Q ss_pred CC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 132 GV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 132 Gl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
|+ +||......-| ++..--+-..-+|.++|.||.
T Consensus 140 g~~FDWdrEiSTC~P-------dYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 140 GISFDWDREISTCEP-------DYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred CcccccccccccCCc-------chhHHHHHHHHHHHHhhhhhc
Confidence 98 56655432222 223333445668999999997
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=70.33 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=107.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCC--CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQT--RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~--R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.+||||.-.++-+|..-... .+.++=|-|- +.. -...+....+..++-.+|++++... -|+|
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~-------if~q 80 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKST-------IFVQ 80 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheE-------EEEe
Confidence 799999999999888888544432 3333333321 111 1233444556677778899987653 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+-.+. .+.+-.| .|+.+-.+|+.. +.|. ++.. +.. .
T Consensus 81 S~~~~~-~el~~~l-------~~~~~~~~l~r~----------~~~k------------~~~~-------~~~--~---- 117 (333)
T PRK00927 81 SHVPEH-AELAWIL-------NCITPLGELERM----------TQFK------------DKSA-------KQK--E---- 117 (333)
T ss_pred CCCchh-HHHHHHH-------HhhhhHHHHHhh----------hhHH------------HHHh-------ccC--C----
Confidence 985443 2333222 355554444311 0010 0000 000 0
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCC------CCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW------TPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~------~~P~f 304 (605)
+ . +=|..+|=.--+.|-...+.++|.-|.|....--.-.-+.+.++. ..|..
T Consensus 118 -------------~----~-----~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~ 175 (333)
T PRK00927 118 -------------N----V-----SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEP 175 (333)
T ss_pred -------------C----C-----CcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChh
Confidence 0 0 013334443444444567889999999986322222234445552 46765
Q ss_pred EE---ecceecCCCc--cccccCCC----CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNGS--KLSKRQGD----MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg~--KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.| .|+|.+.+|. ||||+.++ +.+.+ .|+.+..-+...
T Consensus 176 i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~I~~KI~~a 221 (333)
T PRK00927 176 LIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKTIAKKIKKA 221 (333)
T ss_pred hhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHHHHHHHHhC
Confidence 44 3888999886 99999874 44443 788888888764
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0023 Score=70.45 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=62.6
Q ss_pred ccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHHc
Q psy16872 259 PTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS 333 (605)
Q Consensus 259 PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~ 333 (605)
.+|-+--+.|=... +++.++-|.|...|--.=+-+.+.+|...|.-.+.|+|.+.+|+||||+.++ +++. +.
T Consensus 168 f~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~---d~ 244 (410)
T PRK13354 168 FFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLD---PE 244 (410)
T ss_pred hccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceecc---CC
Confidence 33444444444444 8899999999987766666777888988786678999999999999999874 4443 33
Q ss_pred CCCHHHHHHHHHH
Q psy16872 334 EFLPNALINFVTN 346 (605)
Q Consensus 334 G~~PeAl~nfla~ 346 (605)
-.+|+.+..++..
T Consensus 245 ~tsp~~i~qki~~ 257 (410)
T PRK13354 245 KTSPYEFYQFWMN 257 (410)
T ss_pred CCCHHHHHHHHHc
Confidence 4668888888864
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0037 Score=68.82 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.8
Q ss_pred ccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCC-CCChHHHHHc
Q psy16872 259 PTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG-DMSVEAIRNS 333 (605)
Q Consensus 259 PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g-~~sv~~~r~~ 333 (605)
.+|-+--+.|=... +.++++=|.|...|--.=.-+.+.+|..++.-.+.|+|.+.+|+||||+.+ ++++. +.
T Consensus 170 f~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~---d~ 246 (408)
T PRK05912 170 FLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLD---EE 246 (408)
T ss_pred hhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCC---CC
Confidence 33443344444444 788888899987654444456677886655447899999999999999986 35554 34
Q ss_pred CCCHHHHHHHHHHh
Q psy16872 334 EFLPNALINFVTNF 347 (605)
Q Consensus 334 G~~PeAl~nfla~l 347 (605)
-..|+.+..++...
T Consensus 247 ~tsp~~i~qki~~~ 260 (408)
T PRK05912 247 KTSPYEMYQKWMNI 260 (408)
T ss_pred CCCHHHHHHHHhcC
Confidence 46899999998764
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=81.26 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=68.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------C-----------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------R-----------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R-----------------~~~~~ 120 (605)
|++||.+|+||+++..+-..+||.+ .|.-++++-.+|-- + .+..+
T Consensus 47 PyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~ 126 (1159)
T PLN02882 47 PFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRY 126 (1159)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999975 58888777666521 1 13467
Q ss_pred HHHHHHHHHHcC--CCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 121 VEKLEQDLKWIG--VVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 121 ~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.+.+.++.|| ++||.. |+.. ++.+.-+....+|.++|..|+
T Consensus 127 ~~~~~~~~~rlG~~~D~~~~---------y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 127 SKEWEKTVTRTGRWIDFEND---------YKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHcCcEEECCCC---------cCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 788999999999 899873 4433 344455667779999999997
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=80.47 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=66.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-------------------C--------------CcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-------------------R--------------FVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-------------------R--------------~~~~~ 120 (605)
|++||.|||||+++...-..+||-+ .|.-++.+-.+|.. | -+.++
T Consensus 137 Py~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~ 216 (1066)
T PLN02381 137 PNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEY 216 (1066)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999964 58777766666531 0 13466
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C 173 (605)
.+.|.+.++.||+ +|+. +|+.. ++...-+....+|.++|..|+.
T Consensus 217 ~~~~~~q~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 217 GGTILNQLRRLGASLDWSR---------ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHhCchhccCC---------ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 7888999999995 5544 24443 3344456677799999999974
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00078 Score=81.31 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=48.8
Q ss_pred C-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 302 P-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 302 P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.||+..| .. ..+..||.+.+.+
T Consensus 605 Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~-~~------~~D~~fs~~~~~~ 666 (938)
T TIGR00395 605 PRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADAA-ET------VQDADWKESEVEG 666 (938)
T ss_pred CcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CC------CCCCCcCHHHHHH
Confidence 5 6788888765 89999999998 689999888 99999999999876 22 3456788877766
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.009 Score=65.24 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=56.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-------CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-------DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-------D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.+||||.-.|+-+|..-.. +.+.++=|=|- |++ ...+....+..++-.+||+++... -|.
T Consensus 54 qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~-~lr~~~~~~~a~~lA~GlDP~ks~-------if~ 124 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPR-ELGKATRSTAAIYLACGIDPSKAS-------VFV 124 (389)
T ss_pred CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHH-HHHHHHHHHHHHHHHcCcCccceE-------EEE
Confidence 89999999999999999976654 54443333332 222 233444556778888899998654 389
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHH
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLN 181 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~ 181 (605)
||+--+ +.+.+=. +.|.++-.+|+
T Consensus 125 QS~v~e-~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHVPA-HAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCCch-hHHHHHH-------HHhhCcHHHHH
Confidence 997544 3333322 34777766664
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0098 Score=70.36 Aligned_cols=126 Identities=23% Similarity=0.303 Sum_probs=89.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC-----------------------CC---------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT-----------------------RF---------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~-----------------------R~---------~~~~~ 121 (605)
|.+||.||+|||.+.-+-..++|.+ .|.=+|=+-.||.. |+ .+++.
T Consensus 42 PNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~ 121 (877)
T COG0525 42 PNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESG 121 (877)
T ss_pred CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Confidence 3899999999999999988999864 58777766666642 21 46888
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCc
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~ 199 (605)
..|.+.|+.||+..|=.-. |+.. ++...-++..-+|.++|..|+.. ..-..+-.
T Consensus 122 ~~I~~Q~~rLG~S~DWsrE-------~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~-----------------~lVNWcP~ 177 (877)
T COG0525 122 GTIREQLRRLGVSVDWSRE-------RFTMDPGLSRAVQEAFVRLYEKGLIYRGE-----------------RLVNWCPK 177 (877)
T ss_pred HHHHHHHHHhCCCcccccc-------cccCCHHHHHHHHHHHHHHHHCCceeecC-----------------CcccCCCc
Confidence 8999999999986553311 2222 34456678888999999999731 11234455
Q ss_pred Cc-CCCHHHHHHHHhcCCCceEEEEcC
Q psy16872 200 CR-NLTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 200 cr-~ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
|+ .+|..|++.+..+|.-+-||+.+-
T Consensus 178 ~~TAiSd~EVe~~e~~g~L~~i~y~l~ 204 (877)
T COG0525 178 CRTAISDIEVEYKEVEGKLYYIKYPLA 204 (877)
T ss_pred cccchhhhhhccceeeeeEEEEEEecC
Confidence 65 478888877777776667776654
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0032 Score=72.64 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=76.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC--------------------------CC-------CCcHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD--------------------------QT-------RFVPEA 120 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD--------------------------~~-------R~~~~~ 120 (605)
|++||.||+||+++..+-..+||.+ .|.-++.+=..| .+ ..+.++
T Consensus 32 Py~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (601)
T PF00133_consen 32 PYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEEF 111 (601)
T ss_dssp -BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhhhh
Confidence 5999999999999999999999964 576665322222 11 124577
Q ss_pred HHHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCC
Q psy16872 121 VEKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKY 196 (605)
Q Consensus 121 ~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y 196 (605)
.+.+.++++.||+ +|+.. |... ++.+.-.....+|.++|..|+-.. +-.|
T Consensus 112 ~~~~~~~~~~lG~~~Dw~~~---------y~T~d~~y~~~v~~~F~~l~~kglIyr~~~-----------------pv~w 165 (601)
T PF00133_consen 112 IEEQKEQFKRLGVSIDWDRE---------YFTMDPEYEKFVWWQFKKLYEKGLIYRGKK-----------------PVNW 165 (601)
T ss_dssp HHHHHHHHHHTT--SECTCE---------EETTSHHHHHHHHHHHHHHHHTTSEEEEEE-----------------EEEE
T ss_pred hhhhhhhhhheeeecccCCc---------eEECCccHhHHHHHHHHHHHhcCcEEeeCC-----------------CCCc
Confidence 8889999999996 66653 3332 233444566679999999997311 1123
Q ss_pred CCcCc-CCCHHHHHHHHhcCCCceEEEEcCC
Q psy16872 197 DNKCR-NLTQEQIDEKLKENSKYCIRFKLTN 226 (605)
Q Consensus 197 ~~~cr-~ls~~e~~~~~~~g~~~~iR~k~~~ 226 (605)
+-.|+ .++..|++.+...+....|+|++.+
T Consensus 166 ~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~ 196 (601)
T PF00133_consen 166 CPSCQTALSDHEVEYKEVKSPSIYVKFPLKD 196 (601)
T ss_dssp ETTTTEEE-GGGEEEEEEEEEEEEEEEEESS
T ss_pred CcccccchhhhhcccccccCceEEEEEEecC
Confidence 33343 2555555322233444567887753
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.05 Score=63.50 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecCC-C-ccccccCC--CCChHHHHH
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLN-G-SKLSKRQG--DMSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~d-g-~KLSKR~g--~~sv~~~r~ 332 (605)
..+|=.--+.|-...+.++|.-|.|...---.-.-+.+.+|.. .|...|.|++.+.+ | +||||+.+ .+.+.+
T Consensus 160 ll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D--- 236 (682)
T PTZ00348 160 QVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED--- 236 (682)
T ss_pred HHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC---
Confidence 3334333444445667888999999642111111333567854 56667789988886 3 69999985 355543
Q ss_pred cCCCHHHHHHHHHHh
Q psy16872 333 SEFLPNALINFVTNF 347 (605)
Q Consensus 333 ~G~~PeAl~nfla~l 347 (605)
.|+.+..-+...
T Consensus 237 ---spe~I~kKI~kA 248 (682)
T PTZ00348 237 ---TEEDVARKIRQA 248 (682)
T ss_pred ---CHHHHHHHHHhC
Confidence 788888888753
|
|
| >KOG4426|consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.047 Score=59.66 Aligned_cols=122 Identities=26% Similarity=0.416 Sum_probs=72.7
Q ss_pred cEEEecCCcccchhhhhh----------hhhcCCcceEEcCCCCcccHHHHHHHHHH---cCCCC---CcEEEe--ccee
Q psy16872 250 PVIIKSDGFPTYHFANVV----------DDHHMNISHVLRGVEWQISTTKHILIYKA---FGWTP---PKFAHL--PLLL 311 (605)
Q Consensus 250 ~Vi~ksDG~PtY~fA~vV----------DD~~m~ITHVIRG~d~l~stpkqi~ly~a---lG~~~---P~f~H~--plil 311 (605)
..++||||-.||+=.... -||.--|+. -|.-.+- ..+|.| .||-- |..-|+ ++++
T Consensus 369 LtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD--~GQs~Hf-----~t~fkAar~~gwld~~~~RV~HvgFGlVL 441 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVD--SGQSQHF-----NTIFKAARKAGWLDPTYPRVEHVGFGLVL 441 (656)
T ss_pred eEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEee--CchhHHH-----HHHHHHHHHcCccCCCccceeeeeeeeEE
Confidence 567899999999743321 133322222 2332221 234544 68854 556675 4799
Q ss_pred cCCCccccccCCCC-------------ChHHHHHcC----CCHHHHHHHHHHhcCCC---CCCCCC-CccccCCHHHHHH
Q psy16872 312 NLNGSKLSKRQGDM-------------SVEAIRNSE----FLPNALINFVTNFGGGF---HDHQRT-SKSQLFSMKDLVE 370 (605)
Q Consensus 312 ~~dg~KLSKR~g~~-------------sv~~~r~~G----~~PeAl~nfla~lG~~~---~~~~~~-~~~e~~s~eeli~ 370 (605)
+.||+|.-.|.|.+ +...+.++| ++||.+..--..+|+|- .+-..+ -++=+||++.|.+
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~ 521 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLE 521 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhh
Confidence 99999999999973 333444443 67887776655555321 000001 2345799999999
Q ss_pred Hhcccccc
Q psy16872 371 KVCNNATY 378 (605)
Q Consensus 371 ~~~~~~~~ 378 (605)
|-=|+|+|
T Consensus 522 DrGnTAvY 529 (656)
T KOG4426|consen 522 DRGNTAVY 529 (656)
T ss_pred ccCcceeh
Confidence 87788877
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=71.06 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=58.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEecc---CC----------------------------C---------C
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIE---DT----------------------------D---------Q 113 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiE---DT----------------------------D---------~ 113 (605)
|+|||.||+||++|.+....+||-+ .|.=+|..= .| + +
T Consensus 34 Py~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~ 113 (938)
T TIGR00395 34 PYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDP 113 (938)
T ss_pred CCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCH
Confidence 5999999999999999999999864 465554311 11 1 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCC--CCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 114 TRFVPEAVEKLEQDLKWIGVVPD--ESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 114 ~R~~~~~~~~I~~~L~wlGl~~D--e~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
.-.+..+...+.++|+.||+..| .. |...+ +...-+....+|.++|..|+
T Consensus 114 ~~~~~~~~~~~~~~~~~lG~s~DW~r~---------~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 114 EYIVEYFSREAESACKSMGYSIDWRRS---------FKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHHHHHHHHHHHhCceEECCCC---------ccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 11124556689999999998654 32 33222 22333556668999999996
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=71.91 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=36.1
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+...++++ .+|+||||+.|+ ++..++.+. |.++|+|.||+..+
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~ 749 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAG 749 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcC
Confidence 55556655 799999999998 688888887 99999999998765
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.18 Score=55.22 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=46.1
Q ss_pred ccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCC
Q psy16872 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323 (605)
Q Consensus 259 PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g 323 (605)
.+|-+--+.|=.....+.++-|.|...|--.=..|.+.++-..+.-...||+.+.+|.||||+.|
T Consensus 163 f~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 163 FIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred hhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 44545555555556666888999998766555566666664445557788888999999999965
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.051 Score=66.26 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.3
Q ss_pred CCcceEEcCCCCcccHHHHHHHHH---HcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYK---AFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~---alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-.+.++=|.|++.. -.+.++.- .+|-.|+ ...-++++++.+|+|||||.|+ ++..++.++ |.++|+|.|++.
T Consensus 544 ~Pad~~~~G~Di~r~-Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls 621 (975)
T PRK06039 544 FPADFIVEGIDQTRG-WFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLS 621 (975)
T ss_pred CCceEEEechhhHhh-HHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 334555567777643 23333322 2344443 3444577788999999999998 688888888 999999999998
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+. ...+..||.+.+++
T Consensus 622 ~~~-------~~~D~~fs~~~~~~ 638 (975)
T PRK06039 622 SSA-------PWEDLRFSEDGVRE 638 (975)
T ss_pred CCC-------CCCCceechhHHHH
Confidence 772 13456788888554
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.058 Score=65.21 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=59.5
Q ss_pred CcceEEcCCCCcccHHHHHHHH---HHcCC---CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIY---KAFGW---TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFV 344 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly---~alG~---~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfl 344 (605)
-.+..+=|.|++.+ |.+.| .+..| +.| .+.++++++. +|+||||+.|+ ++..++.+. |.++|+|.||
T Consensus 530 P~D~~~~GkDii~~---Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L 604 (897)
T PRK12300 530 PVDWRHSGKDLIPN---HLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYL 604 (897)
T ss_pred CceEEEeeeccCcc---HHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHH
Confidence 34455668888754 33222 22233 235 5777888777 89999999998 688888887 9999999999
Q ss_pred HHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 345 TNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 345 a~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+..+ .. ..+..|+.+.+..
T Consensus 605 ~~~~-~~------~~D~~fs~~~v~~ 623 (897)
T PRK12300 605 TSSA-EL------LQDADWREKEVES 623 (897)
T ss_pred HhCC-CC------CCCCccCHHHHHH
Confidence 9876 22 3445677776554
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.045 Score=64.42 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=122.1
Q ss_pred ccHHHHHHHHHHHHHCCCEee-eCCCHHHHHHHHHHHH---hCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 152 KRLALYQKEVQTLLHNGSAYK-CFCSDSRLNLIRKDAV---KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY~-Cfcs~e~l~~~r~~~~---~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
++-+.+..+.+.|-=-|.-+- .+-+.++++.+++.+. +.|. .|.+.| +.+++.+...+|.+...|=...+.
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~Li~~G~--aY~~~~---~~~~~~~~~~~~~~~~~R~~~~ee 334 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGK--AYVDDT---PREQMRKERMDGIESKCRNNSVEE 334 (722)
T ss_pred CChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHHHHcCC--eeecCC---CHHHHHHHHhcCCCCCccCCCHHH
Confidence 445566666666665565431 2335566777665433 4444 465555 456654332234433334221111
Q ss_pred ------------ccceeccccceee--ecCCCCCCCcEEEecCCcccchhhhhhhh-hcCCcceEEcCCCCcccHHHHHH
Q psy16872 228 ------------TESWQDLVYGDIS--YNVFHNEGDPVIIKSDGFPTYHFANVVDD-HHMNISHVLRGVEWQISTTKHIL 292 (605)
Q Consensus 228 ------------~~~~~D~v~G~i~--~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD-~~m~ITHVIRG~d~l~stpkqi~ 292 (605)
.......++.++. ++ +....|+|+.|.||.|-.....-++- -.....||| +||+.... |+
T Consensus 335 ~~~~~~~m~~g~~~~~~~~lR~k~d~~~~-n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~v--dD~~~gIT-hv- 409 (722)
T PLN02907 335 NLRLWKEMIAGSERGLQCCVRGKLDMQDP-NKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPF--VDALEGVT-HA- 409 (722)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcccCCC-CCCcccCEEEEecCCcccccCCccceeeccCCceEE--EcccCCCc-eE-
Confidence 1123345566654 33 34568999999999876654433321 234566777 45543211 11
Q ss_pred HHHHcCC--CCCcE----EEecce--ecCCCccccccCCC---CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccc
Q psy16872 293 IYKAFGW--TPPKF----AHLPLL--LNLNGSKLSKRQGD---MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQ 361 (605)
Q Consensus 293 ly~alG~--~~P~f----~H~pli--l~~dg~KLSKR~g~---~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e 361 (605)
.+...| ..|.+ -++.+- .-.+-..|.--..- -.+..|++.|+.+ ||+. +.-+.-..
T Consensus 410 -lRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~----------Gwdd--pr~pt~~~ 476 (722)
T PLN02907 410 -LRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVE----------GWDD--PRFPTVQG 476 (722)
T ss_pred -eecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccccccchHhHhhcCccc----------CCCC--CCcccHHH
Confidence 011111 11221 111110 00011122211111 2588999999987 8653 22122334
Q ss_pred c----CCHHHHHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhhc
Q psy16872 362 L----FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429 (605)
Q Consensus 362 ~----~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~ 429 (605)
+ ++.+.+.+ -|....++++++.||.+||.|+|+++|....
T Consensus 477 ~rrrG~~~eai~~----------------------------f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a 520 (722)
T PLN02907 477 IVRRGLKIEALKQ----------------------------FILSQGASKNLNLMEWDKLWTINKKIIDPVC 520 (722)
T ss_pred HHHcCCCHHHHHH----------------------------HHHHhCCCcCCccccHHHHHHHHHHHhccCC
Confidence 5 77777777 8999999999999999999999999998653
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.061 Score=64.69 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=60.5
Q ss_pred CcceEEcCCCCcccHHHHHHHHHH---cCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKA---FGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..+..+=|.|++.+ -.|..++.+ +|..||. ..-++++++.+|+||||+.|+ ++..++.+. |.++|+|.|++..
T Consensus 564 P~d~~i~G~Di~r~-Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRG-WFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhcc-HHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 34455557777642 344444443 3655552 333466678899999999998 688888887 9999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
.. ..+-.|+.+.+..
T Consensus 642 --~~------~~D~~fs~~~l~~ 656 (861)
T TIGR00392 642 --DP------WEDLRFSDEILKQ 656 (861)
T ss_pred --CC------CCCceECHHHHHH
Confidence 23 3556788887755
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.11 Score=64.30 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=58.8
Q ss_pred cceEEcCCCCcccHHHHHHHHH---HcCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYK---AFGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~---alG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
.+.++-|.|.+.. -.+-++.- .+|..+| ...+++++++.+|+||||+.|+ +...++.+. |.++|||.||+...
T Consensus 568 aD~i~eG~Dq~Rg-Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 568 ADFVAEGLDQTRG-WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred ceEEEEecchhhh-HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 4445556666542 22222222 2366666 4677789999999999999998 577788776 89999999998654
Q ss_pred CCCCCCCCCCccccCCHHHHHH
Q psy16872 349 GGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 349 ~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..+ ..+..|+.+.+.+
T Consensus 646 ~~~------~~d~~fs~~~v~~ 661 (1159)
T PLN02882 646 VVR------AEPLRFKEEGVFG 661 (1159)
T ss_pred ccc------CcCcccCHHHHHH
Confidence 222 2334577776554
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.11 Score=61.93 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=61.1
Q ss_pred CcceEEcCCCCcccHH--HHHHHHHHcCCCCC---cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTT--KHILIYKAFGWTPP---KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stp--kqi~ly~alG~~~P---~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-.+-.+-|-|-+. += +.+++--+|.-+.| .|.| +|+.+.+|+||||+.|+ +...++.++ |-.+|||.+++.
T Consensus 478 Pt~llvtG~DIIf-fWvarmi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~ 554 (877)
T COG0525 478 PTDLLVTGHDIIF-FWVARMIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLAS 554 (877)
T ss_pred CCccccccchhhH-HHHHHHHHHHHHhcCCCCccEEEEe-eeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 3444456777663 22 22333334555677 3555 88899999999999998 577788887 899999999998
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++ +. +.+-.|+.+.+..
T Consensus 555 ~~-~~------G~Di~~~~~~~~~ 571 (877)
T COG0525 555 LA-SP------GRDINFDEKRVEG 571 (877)
T ss_pred cc-CC------CcccCcCHHHHHH
Confidence 86 22 4556677777664
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.15 Score=61.93 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHH---cCCCCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKA---FGWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-.+-.+=|.|++. .-.|..++.+ .|-.|| ...-++++++.+|+||||+.|+ ++..++.+. |.++++|.|++.
T Consensus 544 ~P~Dl~~~G~Di~r-~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHR-GWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccc-hHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 33444556888873 2334444443 355555 3444578899999999999998 578888876 999999999986
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+-.||.+.+..
T Consensus 622 -~-~~------~~D~~~s~~~l~~ 637 (912)
T PRK05743 622 -T-DY------SGDVRISDEILKQ 637 (912)
T ss_pred -c-CC------CCCeeecHHHHHH
Confidence 4 23 3455677666543
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.2 Score=61.13 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=55.6
Q ss_pred EEcCCCCcccHHHHHHHHH---HcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHc--------CCCHHHHHH
Q psy16872 277 VLRGVEWQISTTKHILIYK---AFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS--------EFLPNALIN 342 (605)
Q Consensus 277 VIRG~d~l~stpkqi~ly~---alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~--------G~~PeAl~n 342 (605)
.+=|.|.+. .-.|-.++. +.|-.|+ .+.| +++++.+|+||||+.|+ ++..++.+. -|.++++|.
T Consensus 568 ~~eG~Di~r-gWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~ 645 (974)
T PLN02843 568 YLEGSDQHR-GWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRL 645 (974)
T ss_pred eeeeccccc-hHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHH
Confidence 345777763 234444443 2354343 3566 88899999999999998 578888873 399999999
Q ss_pred HHHHhcCCCCCCCCCCccccCCHHHHH
Q psy16872 343 FVTNFGGGFHDHQRTSKSQLFSMKDLV 369 (605)
Q Consensus 343 fla~lG~~~~~~~~~~~~e~~s~eeli 369 (605)
|++... + ..+..|+.+.+.
T Consensus 646 ~l~~~~--~------~~d~~~s~~~l~ 664 (974)
T PLN02843 646 WVASVD--Y------TGDVLIGPQILK 664 (974)
T ss_pred HHHhcc--c------CCCceeCHHHHH
Confidence 998633 3 234567766554
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.15 Score=58.98 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCcceEEcCCCCcccHHHHHHHH--HHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVLRGVEWQISTTKHILIY--KAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly--~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.-++-.+-|.|++.+= .+..++ -++--+.| ....++++++.+|+||||+.|+ ++..++.++ |..+|+|-|++.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~ 590 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLAS 590 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHH
T ss_pred CCcccccCCccchhhH-HHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHh
Confidence 5677778888988652 222333 23332333 5667789999999999999998 588999998 999999999997
Q ss_pred hc
Q psy16872 347 FG 348 (605)
Q Consensus 347 lG 348 (605)
.+
T Consensus 591 ~~ 592 (601)
T PF00133_consen 591 SA 592 (601)
T ss_dssp HS
T ss_pred cC
Confidence 66
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.25 Score=60.22 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=57.5
Q ss_pred eEEcCCCCcccHHHHHHHHHHcC---CCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcC
Q psy16872 276 HVLRGVEWQISTTKHILIYKAFG---WTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGG 349 (605)
Q Consensus 276 HVIRG~d~l~stpkqi~ly~alG---~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~ 349 (605)
..+=|.|.+. .-.|..+..+++ -.|| .+.| +++++.+|+||||+.|+ ++..++.+. |.++++|.|++. +
T Consensus 586 ~~~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~lls-~- 660 (961)
T PRK13804 586 LYLEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVAS-V- 660 (961)
T ss_pred EEEEEccccc-HHHHHHHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHHHHh-C-
Confidence 3445777763 234444555543 3344 3566 78899999999999998 577888876 999999999986 3
Q ss_pred CCCCCCCCCccccCCHHHHHH
Q psy16872 350 GFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 350 ~~~~~~~~~~~e~~s~eeli~ 370 (605)
.+ ..+-.||.+.|..
T Consensus 661 ~~------~~D~~fs~~~l~~ 675 (961)
T PRK13804 661 DY------SDDQRIGKEILKQ 675 (961)
T ss_pred CC------CCCcccCHHHHHH
Confidence 23 3455678776543
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.2 Score=61.13 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=45.3
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.| +++++.+|+||||+.|+ ++..++.+. |.|+|+|.|++..+ . ..+..||.+.+..
T Consensus 571 ~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~--~------~~d~~fs~~~l~~ 628 (958)
T PLN02943 571 YLH-GLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALGT--A------GQDLNLSTERLTS 628 (958)
T ss_pred EEe-ccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhCC--C------CCCccccHHHHHH
Confidence 455 56688999999999998 688899887 99999999998743 2 3455688887655
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.25 Score=60.86 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=45.6
Q ss_pred EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
..-++++++.+|+||||+.|+ ++..++.+. |.++++|.||+..+ +. ..+..||.+.+..
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~-~~------g~D~~fs~~~l~~ 584 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALT-AQ------GRDIKLAKERIEG 584 (1052)
T ss_pred eEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcC-CC------CCCCcccHHHHHH
Confidence 444578889999999999998 688888877 99999999999865 22 3445678766533
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.099 Score=62.03 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=52.3
Q ss_pred hcCCcceEEcCCCCcccHHHHHHHHH----Hc---C-CCC--C--cEEEecceecCCCccccccCCC-CChHHHHHcCCC
Q psy16872 270 HHMNISHVLRGVEWQISTTKHILIYK----AF---G-WTP--P--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFL 336 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~stpkqi~ly~----al---G-~~~--P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~ 336 (605)
+-|-|.-=|-|.||.. -|++.+. || | |+. | .-..-+|++..+|+||||++|+ ++.++..++ |-
T Consensus 523 yW~PVD~yigG~ehav---lHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yG 598 (814)
T COG0495 523 YWYPVDLYIGGIEHAV---LHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YG 598 (814)
T ss_pred cccChheeecchhHHH---HHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hC
Confidence 3455555566666663 3543332 22 2 442 3 1344556777789999999998 689999988 99
Q ss_pred HHHHHHHHHHhc
Q psy16872 337 PNALINFVTNFG 348 (605)
Q Consensus 337 PeAl~nfla~lG 348 (605)
++++|-|++..|
T Consensus 599 ADt~Rl~~m~~a 610 (814)
T COG0495 599 ADTVRLYIMFAA 610 (814)
T ss_pred chHHHHHHHhhC
Confidence 999999999998
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.48 Score=57.10 Aligned_cols=124 Identities=16% Similarity=0.300 Sum_probs=79.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE--------------------ec-----cCCCCC-------CCcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL--------------------RI-----EDTDQT-------RFVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL--------------------Ri-----EDTD~~-------R~~~~~~ 121 (605)
|++||.+|||||.+=++-..+.|.+ .|--+- .+ ++...+ ....+++
T Consensus 58 PyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v 137 (933)
T COG0060 58 PYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQV 137 (933)
T ss_pred CCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHH
Confidence 5999999999999999998888864 354332 21 222111 1245788
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCC
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYD 197 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~ 197 (605)
+...++++.||+ +||. ||..- +..+.--....+|.++|+.|+-+ ++--|.
T Consensus 138 ~~q~~~f~RLGv~~Dw~n---------pY~Tmd~~ye~~~~~~f~~~~~kGllyrg~-----------------Kpv~ws 191 (933)
T COG0060 138 DEQKEQFKRLGVWGDWEN---------PYKTMDPSYEESVWWAFKELYEKGLLYRGY-----------------KPVPWS 191 (933)
T ss_pred HHHHHHHHhheEeeccCC---------CeecCCHHHHHHHHHHHHHHHHCCCeecCC-----------------eeeeec
Confidence 888999999997 6765 45433 34444456778999999999631 111233
Q ss_pred CcCcC-CCHHHHHHHHhcCCCceEEEEcC
Q psy16872 198 NKCRN-LTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 198 ~~cr~-ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
-.|+. |+..|++-.-.....-.|+|++.
T Consensus 192 p~c~TaLAeaEvey~d~~dpSIyV~F~v~ 220 (933)
T COG0060 192 PRCETALAEAEVEYGDVKDPSIYVKFPVK 220 (933)
T ss_pred CCCCcchhhhhhcccccCCceEEEEEEec
Confidence 44643 77777653323333446777774
|
|
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.73 Score=54.58 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCCC------------------------C---------cHHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQTR------------------------F---------VPEAV 121 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~R------------------------~---------~~~~~ 121 (605)
-.||.||||||-|.-.-...||.+ .|.-+|=+-.||..= + .+++-
T Consensus 85 NVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g 164 (995)
T KOG0432|consen 85 NVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYG 164 (995)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhC
Confidence 567999999999999999999975 588888888887531 0 24666
Q ss_pred HHHHHHHHHcCC--CCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee
Q psy16872 122 EKLEQDLKWIGV--VPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 122 ~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C 173 (605)
..|.+.|+.||- +||..-... ..++-..-.++...|-++|..|+.
T Consensus 165 ~~I~~Qlk~lGas~DW~re~fTm-------D~~~s~AV~eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 165 GRIYNQLKRLGASLDWDREAFTM-------DPKLSRAVTEAFVRLHEEGLIYRA 211 (995)
T ss_pred ccHHHHHHHhcCcccccHhhccc-------CHHHHHHHHHHHHHHHhcCceEec
Confidence 789999999996 566542111 123344567788899999999983
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.27 Score=56.60 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=116.7
Q ss_pred ccHHHHHHHHHHHHHCCCEe---eeCCCHHHHHHHHHHHH---hCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcC
Q psy16872 152 KRLALYQKEVQTLLHNGSAY---KCFCSDSRLNLIRKDAV---KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLT 225 (605)
Q Consensus 152 er~~~Y~~~a~~Li~~G~AY---~Cfcs~e~l~~~r~~~~---~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~ 225 (605)
++-+.+..+.+.|---|.-+ +.+ ..++++.+++.+. +.|. .|.+.| +.+|+.+....|.+..-|=+.+
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~~-QSdr~d~y~e~a~~Li~~G~--AY~c~c---s~eei~~~r~~g~p~~~R~~s~ 172 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPTY-SSDYMDLMYEKAEELIKKGL--AYCDKT---PREEMQKCRFDGVPTKYRDISV 172 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCceee-ccccHHHHHHHHHHHHHcCC--EEEecC---CHHHHHHHHhCCCCCCCCCCCH
Confidence 45566667777776666644 123 4456777665433 3343 574444 5666654333455443342211
Q ss_pred CCc------------cceeccccceeeecC-CCCCCCcEEEecCCcccchhhhhhh-hhcCCcceEEcCCCCcccHHHHH
Q psy16872 226 NHT------------ESWQDLVYGDISYNV-FHNEGDPVIIKSDGFPTYHFANVVD-DHHMNISHVLRGVEWQISTTKHI 291 (605)
Q Consensus 226 ~~~------------~~~~D~v~G~i~~~~-~~~~~D~Vi~ksDG~PtY~fA~vVD-D~~m~ITHVIRG~d~l~stpkqi 291 (605)
+.+ ..-.+.+++++.... +...+|+|+.|.+..|...--.-=| --.....||| +||+.... |+
T Consensus 173 ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vV--DD~l~gIT-Hv 249 (601)
T PTZ00402 173 EETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPI--IDSVEGVT-HA 249 (601)
T ss_pred HHHHHHHHhccccccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceee--EccccCCc-eE
Confidence 110 011356677765442 3457899999988766443111000 1224455666 34443211 10
Q ss_pred HHHHHcCCC--CCc----EEEecceecCCCcccc--ccCCC----CChHHHHHcCCC--------HHHHHHHHHHhcCCC
Q psy16872 292 LIYKAFGWT--PPK----FAHLPLLLNLNGSKLS--KRQGD----MSVEAIRNSEFL--------PNALINFVTNFGGGF 351 (605)
Q Consensus 292 ~ly~alG~~--~P~----f~H~plil~~dg~KLS--KR~g~----~sv~~~r~~G~~--------PeAl~nfla~lG~~~ 351 (605)
.....|. .|. +-++.+ --+.---+| .-.|. -.+..+.+.|+. |. +++|.+.
T Consensus 250 --lRg~E~l~~tp~q~~L~~aLg~-~~P~~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpT--i~glrRr---- 320 (601)
T PTZ00402 250 --LRTNEYHDRNDQYYWFCDALGI-RKPIVEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPT--VRALVRR---- 320 (601)
T ss_pred --eechhhhhCcHHHHHHHHHhCC-CCceEEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHh--HHHHHHc----
Confidence 1111111 122 111111 001111122 11121 146778888773 22 3333333
Q ss_pred CCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhHHHHHhhc
Q psy16872 352 HDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVM 429 (605)
Q Consensus 352 ~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~ 429 (605)
.++.+++.+ .|+...++++++.||.+||.|+|++||....
T Consensus 321 ----------G~~peai~~----------------------------f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a 360 (601)
T PTZ00402 321 ----------GLKMEALRQ----------------------------FVQEQGMSKTVNFMEWSKLWYFNTQILDPSV 360 (601)
T ss_pred ----------CCCHHHHHH----------------------------HHHHhCCCCCCcccCHHHHHHHHHHHHhhcC
Confidence 357788888 9999999999999999999999999999753
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.78 Score=57.20 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=54.9
Q ss_pred cceEEcCCCCcccHHHHHHHHH--HcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYK--AFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~--alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
.+-++-|-|.+.. -.+.+++. ++-=+.| ...=++++++.+|+||||+.|+ +.-.++.+. |-++|||.||+..+
T Consensus 674 aD~i~eG~Dq~rg-Wf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~ 751 (1205)
T PTZ00427 674 ADFIAEGLDQTRG-WFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSV 751 (1205)
T ss_pred ceEEEEecchhcc-HHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcC
Confidence 4455566666532 23333332 2222345 2333478899999999999998 466667766 88999999998765
Q ss_pred CCCCCCCCCCccccCCHHHH
Q psy16872 349 GGFHDHQRTSKSQLFSMKDL 368 (605)
Q Consensus 349 ~~~~~~~~~~~~e~~s~eel 368 (605)
. . ...+-.|+.+.+
T Consensus 752 ~-~-----~~~Dl~Fse~~v 765 (1205)
T PTZ00427 752 A-V-----RAENLKFQEKGV 765 (1205)
T ss_pred C-C-----CCcccccCHHHH
Confidence 1 1 123446776654
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.55 Score=56.56 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=59.9
Q ss_pred cCCcceEEcCCCCccc-----HHHHHHHHHHcC-C--CCC--cEEEecceec----CCCc--------------------
Q psy16872 271 HMNISHVLRGVEWQIS-----TTKHILIYKAFG-W--TPP--KFAHLPLLLN----LNGS-------------------- 316 (605)
Q Consensus 271 ~m~ITHVIRG~d~l~s-----tpkqi~ly~alG-~--~~P--~f~H~plil~----~dg~-------------------- 316 (605)
.|-++..+-|.||... .--|..|+.. | + ..| .....+|+++ .+|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~~-~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 596 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYDI-GYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGE 596 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHhc-cccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCc
Confidence 3556666667776422 1233334432 2 2 345 3455678888 8888
Q ss_pred -------cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 -------KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 -------KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+.|+ +++.++.++ |.++|+|-|++..+ .+ ..+-.++.+.+..
T Consensus 597 ~~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~-~~------~~d~~~~~~~l~~ 650 (842)
T TIGR00396 597 LVVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG-PI------AASLEWNDSGLEG 650 (842)
T ss_pred ccccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC-Cc------CCCCccCHHHHHH
Confidence 99999998 688999888 99999999998765 22 3344577666543
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.83 Score=55.46 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----CC------------------------------------CCcHH
Q psy16872 82 LHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----QT------------------------------------RFVPE 119 (605)
Q Consensus 82 LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----~~------------------------------------R~~~~ 119 (605)
||+||+++...-..+||.+ .|.-+|+.=..| |. -.+..
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999965 688777643333 10 01123
Q ss_pred HHHHHHHHHHHcCC--CCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 120 AVEKLEQDLKWIGV--VPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 120 ~~~~I~~~L~wlGl--~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.+.+.++++.||+ +|+.. |...+ +...-+....+|.++|++|+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~---------y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRRE---------FTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCC---------eECCChhHHHHHHHHHHHHHHCCCEec
Confidence 44778999999997 45543 33333 22233455668999999996
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.82 Score=56.10 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=47.8
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCC--CCC--cEEEecceecCCCccccccCCC-CChHHHHHc--------------
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGW--TPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS-------------- 333 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~--~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~-------------- 333 (605)
-.+-.+=|-|.+- .-.+.++.-.++. +.| ....++++++.+|+||||+.|+ +...++.+.
T Consensus 538 P~d~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~ 616 (995)
T PTZ00419 538 PTSLLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGN 616 (995)
T ss_pred CCcEEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccc
Confidence 3454555666542 2222222222222 466 3556688999999999999998 444455441
Q ss_pred ----------------------CCCHHHHHHHHHHhc
Q psy16872 334 ----------------------EFLPNALINFVTNFG 348 (605)
Q Consensus 334 ----------------------G~~PeAl~nfla~lG 348 (605)
-|..+|+|.|++..+
T Consensus 617 ~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 617 LPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred cchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 388999999999866
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.3 Score=54.92 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEE
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFIL 106 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiL 106 (605)
|++||.|||||++|...-..+||-+ .|.-+|
T Consensus 54 PY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 54 PYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 5999999999999999999999864 465554
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.1 Score=53.81 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=57.4
Q ss_pred CCcceEEcCCCCccc-----HHHHHHHHHHcC-C--CCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHH
Q psy16872 272 MNISHVLRGVEWQIS-----TTKHILIYKAFG-W--TPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNAL 340 (605)
Q Consensus 272 m~ITHVIRG~d~l~s-----tpkqi~ly~alG-~--~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl 340 (605)
+-++..+-|.||..+ .--|..|+. .| + ..| ...|.+++ ||||+.|+ +++.++.++ |.++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~-~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~l 593 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRD-LGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTA 593 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHH-hhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHH
Confidence 567777888887644 222323322 23 2 245 57888886 99999998 688898887 999999
Q ss_pred HHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 341 INFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 341 ~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|-|++..| .+ ..+-.||.+.+..
T Consensus 594 Rl~l~~~~-~~------~~d~~~s~~~l~~ 616 (805)
T PRK00390 594 RLFEMFAG-PP------EKDLEWSDSGVEG 616 (805)
T ss_pred HHHHHhcC-Cc------cCCcccCHHHHHH
Confidence 99998876 23 3345577666544
|
|
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.8 Score=53.47 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=49.1
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHH--cCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHc-------------
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKA--FGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNS------------- 333 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~a--lG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~------------- 333 (605)
.-.+..+-|-|.+-- -.+.++.-. +.-+.| ...-++|+++.+|+||||+.|+ +...++.+.
T Consensus 607 ~P~d~~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~ 685 (1066)
T PLN02381 607 YPTSVLETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 685 (1066)
T ss_pred CCCeeeeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhcc
Confidence 445666667776632 222222222 333456 2334489999999999999998 455555541
Q ss_pred -----------------------CCCHHHHHHHHHHhc
Q psy16872 334 -----------------------EFLPNALINFVTNFG 348 (605)
Q Consensus 334 -----------------------G~~PeAl~nfla~lG 348 (605)
-|-++|||.|++..+
T Consensus 686 ~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~ 723 (1066)
T PLN02381 686 NLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYT 723 (1066)
T ss_pred ccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCC
Confidence 278999999999876
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=82.37 E-value=2.3 Score=51.97 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=28.1
Q ss_pred cccccCCC-CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 317 KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
||||++|+ +...++.+. |-++++|-|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999998 688888887 99999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 1j09_A | 468 | Crystal Structure Of Thermus Thermophilus Glutamyl- | 2e-65 | ||
| 1g59_A | 468 | Glutamyl-Trna Synthetase Complexed With Trna(Glu). | 9e-64 | ||
| 4gri_A | 512 | Crystal Structure Of A Glutamyl-Trna Synthetase Glu | 6e-63 | ||
| 2cfo_A | 492 | Non-discriminating Glutamyl-trna Synthetase From Th | 7e-48 | ||
| 2o5r_A | 481 | Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec | 5e-45 | ||
| 3afh_A | 488 | Crystal Structure Of Thermotoga Maritima Nondiscrim | 4e-43 | ||
| 3akz_B | 487 | Crystal Structure Of Thermotoga Maritima Nondiscrim | 5e-43 | ||
| 3al0_C | 592 | Crystal Structure Of The Glutamine Transamidosome F | 6e-43 | ||
| 3pnv_A | 505 | V369m Mutant Of Glutamyl-Trna Synthetase From Mycob | 1e-33 | ||
| 2ja2_A | 498 | Mycobacterium Tuberculosis Glutamyl-Trna Synthetase | 1e-33 | ||
| 3pny_A | 505 | Structure Of Glutamyl-Trna Synthetase From Mycobact | 1e-33 | ||
| 4g6z_A | 490 | Crystal Structure Of A Glutamyl-Trna Synthetase Glu | 1e-32 | ||
| 3aii_A | 553 | Archaeal Non-Discriminating Glutamyl-Trna Synthetas | 4e-20 | ||
| 1nzj_A | 298 | Crystal Structure And Activity Studies Of Escherich | 3e-16 | ||
| 2rd2_A | 556 | Glutaminyl-Trna Synthetase Mutant C229r With Bound | 4e-04 |
| >pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna Synthetase Complexed With Atp And Glu Length = 468 | Back alignment and structure |
|
| >pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu). Length = 468 | Back alignment and structure |
|
| >pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound To Glutamic Acid And Zinc Length = 512 | Back alignment and structure |
|
| >pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From Thermosynechococcus Elongatus In Complex With Glu Length = 492 | Back alignment and structure |
|
| >pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351) From Thermotoga Maritima At 2.5 A Resolution Length = 481 | Back alignment and structure |
|
| >pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp Analog Length = 488 | Back alignment and structure |
|
| >pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With Trnagln And A Glutamyl-Amp Analog Length = 487 | Back alignment and structure |
|
| >pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 592 | Back alignment and structure |
|
| >pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis Length = 505 | Back alignment and structure |
|
| >pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase Length = 498 | Back alignment and structure |
|
| >pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis In Space Group P21 Length = 505 | Back alignment and structure |
|
| >pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Burkholderia Thailandensis Bound To L-Glutamate Length = 490 | Back alignment and structure |
|
| >pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 553 | Back alignment and structure |
|
| >pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli Yadb Orf Length = 298 | Back alignment and structure |
|
| >pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog 5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine Length = 556 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 | Back alignment and structure |
|---|
Score = 483 bits (1246), Expect = e-167
Identities = 173/569 (30%), Positives = 270/569 (47%), Gaps = 106/569 (18%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
V R APSPT G H+G
Sbjct: 2 VVTRIAPSPT--------------------------------------------GDPHVG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
AL+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE VGG +
Sbjct: 18 TAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPH 77
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS+RL LYQK + LL G AY+ F + L IRK+ YD + RN+
Sbjct: 78 GPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDGRARNIPP 131
Query: 206 EQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTYH 262
E+ +E+ + + IR K+ T +D + G + + N+ D V++KSDG+PTYH
Sbjct: 132 EEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVV---YDNQEIPDVVLLKSDGYPTYH 188
Query: 263 FANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQ 322
ANVVDDH M ++ V+R EW +ST H+L+Y+AFGW P+F H+PLL N + +K+SKR+
Sbjct: 189 LANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKISKRK 248
Query: 323 GDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIK 382
S++ + FLP AL N++ G D + ++F++++ ++
Sbjct: 249 SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-----EIFTLEEFIQA----------- 292
Query: 383 PTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVE 442
F + V+ DL L N IR V+S EE + E
Sbjct: 293 -----------------FTWERVSLGGPVFDLEKLRWMNGKYIREVLSL---EE---VAE 329
Query: 443 KLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQHP 502
++K + + + YL + R L++ K +++ + +P
Sbjct: 330 RVKPFLREAGLSWE---SEAYLRRAVELMRPRFDTLKEFPEK-ARYLFTED-------YP 378
Query: 503 VESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSL 562
V + L L +L+ L PRL+ + +T +L LR F+ E+GV+ + LR +L
Sbjct: 379 VSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAAL 438
Query: 563 SGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+G + P + E++ +L KE +RRL L
Sbjct: 439 TGSLETPGLFEILALLGKERALRRLERAL 467
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Length = 498 | Back alignment and structure |
|---|
Score = 466 bits (1201), Expect = e-160
Identities = 141/578 (24%), Positives = 226/578 (39%), Gaps = 104/578 (17%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRF PSPT G H
Sbjct: 5 ETVRVRFCPSPT--------------------------------------------GTPH 20
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+G +RTAL+N+ +A+ G+F+ RIEDTD R E+ L L+W+G+ DE VGG
Sbjct: 21 VGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGG 80
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
YGPY QS+R +Y+ + LL G AY F + + R A YDN R+L
Sbjct: 81 PYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA-RHVAAGRNPKLGYDNFDRHL 139
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T Q L E + +R ++ + +W DLV G ++ F D + ++ G P Y
Sbjct: 140 TDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVT---FAAGSVPDFALTRASGDPLY 196
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHLPLLLNLNGS 316
N DD M I+HVLRG + ST + + +++A PKFAHLP +L
Sbjct: 197 TLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTK 256
Query: 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
KLSKR ++ A R+ F+P L+N++ G D LF + ++V
Sbjct: 257 KLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDH-----DLFGLDEMVAA----- 306
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEE 436
FD+ VN + + D + N IR + +
Sbjct: 307 -----------------------FDVADVNSSPARFDQKKADALNAEHIRML----DVGD 339
Query: 437 IRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIE 496
+L+ H+ + +L D+ RI L D F
Sbjct: 340 ---FTVRLRDHLDTHGHHIAL--DEAAFAAAAELVQTRIVVLGDAWEL-LKFFNDDQ--- 390
Query: 497 HLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLRE-FSTEQGVEYSTFM 555
++ K + +L+ + L + +T + L++ ++
Sbjct: 391 --YVIDPKAAAKELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPRKAF 448
Query: 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+R + +G P + E +E+L ++ +++RLR +
Sbjct: 449 SPIRVAATGTTVSPPLFESLELLGRDRSMQRLRAARQL 486
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Length = 481 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-159
Identities = 162/573 (28%), Positives = 252/573 (43%), Gaps = 108/573 (18%)
Query: 23 HSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLL 82
H VRVRFAPSPT G L
Sbjct: 11 HHMVRVRFAPSPT--------------------------------------------GFL 26
Query: 83 HLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVG 142
H+GG RTAL+N+LFA+ G FILRIEDTD R E EKL + L+W+G++ DE VG
Sbjct: 27 HVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVG 86
Query: 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCR- 201
G++GPY QS+R+ +Y++ + L+ G AY + + +R+ + G P Y +
Sbjct: 87 GDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFE 146
Query: 202 -NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGF 258
T E+ E ++ + + FK+ D+V G++ F GD VI++S+G
Sbjct: 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVV---FKTGAIGDFVIMRSNGL 203
Query: 259 PTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318
PTY+FA VVDD M I+HV+RG + +T + + +Y+AF PP FAH+ +L +G KL
Sbjct: 204 PTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKL 263
Query: 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATY 378
SKR G SVEA R+ +LP AL+N++ G + + +L ++++L+
Sbjct: 264 SKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGK-----ELLTLEELISS------- 311
Query: 379 NRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIR 438
F L ++ N D L N +R I
Sbjct: 312 ---------------------FSLDRLSPNPAIFDPQKLKWMNGYYLR-------NMPIE 343
Query: 439 SLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHL 498
L E K D++Y VL ER+ L + + F + P+ +
Sbjct: 344 KLAELAKPFFEKAGIKII---DEEYFKKVLEITKERVEVLSEFPEE-SRFFFEDPAPVEI 399
Query: 499 SQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558
+ E + L LQ +T + + ++ + GV+ F L
Sbjct: 400 PEEMKE------------VFSQLKEELQNVR-WTMEEITPVFKKVLKQHGVKPKEFYMTL 446
Query: 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
R L+G ++GP + ++ +L KE +RR+ L
Sbjct: 447 RRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Length = 490 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-152
Identities = 138/571 (24%), Positives = 237/571 (41%), Gaps = 108/571 (18%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VR RFAPSPT G +H
Sbjct: 24 RPVRTRFAPSPT--------------------------------------------GFIH 39
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
LG +R+ALY + FA+ G+F+LRIEDTD R EAV+ + + + W+G+ DE
Sbjct: 40 LGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDE------ 93
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
GPY Q +R+ Y++ + + G Y C+ S L+ +R+ +G P+YD R
Sbjct: 94 --GPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPE 151
Query: 204 TQEQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPT 260
+ + E +RF+ T +W D V G + NE D V+ + DG P
Sbjct: 152 PGKVLPE-PPAGVAPVLRFRNPLTGTVAWDDAVKGRVE---ISNEELDDLVVARPDGTPM 207
Query: 261 YHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSK 320
Y+F VVDD M I+HV+RG + +T + I I +A G P +AHLP +LN G K+SK
Sbjct: 208 YNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKMSK 267
Query: 321 RQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNR 380
R G MSV R++ +LP A++N++ G D +++F+ + VE
Sbjct: 268 RHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGD------AEIFTREQFVEW--------- 312
Query: 381 IKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSL 440
FDL+ + ++ + D LN N I+ + + L
Sbjct: 313 -------------------FDLEHLGKSPAQYDHNKLNWLNNHYIK-------EADDARL 346
Query: 441 VEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQ 500
K ++ L V+ +R ++++ A + P+
Sbjct: 347 AGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTVKEIAEN-SAMFYRAPAPGA--- 402
Query: 501 HPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
++ + + + L L+T + +T++++A L+ ++ +R
Sbjct: 403 ---DALAQHVTDAVRPALVEFAAALKTVE-WTKEAIAAALKAVLGAHKLKMPQLAMPVRL 458
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
++G PS+ ++ + ++ + R+ L
Sbjct: 459 LVAGTTHTPSIDAVLLLFGRDVVVSRIEAAL 489
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Length = 488 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-152
Identities = 151/573 (26%), Positives = 246/573 (42%), Gaps = 115/573 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 24 ELVRVRFAPSPT--------------------------------------------GHLH 39
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +GG
Sbjct: 40 VGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGG 99
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
++GPY QS+RL +Y++ + L+ + AY + K
Sbjct: 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS-----------------KELFT 142
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + F N D +I+KS+GFPTY
Sbjct: 143 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME---FDNSTLEDFIIMKSNGFPTY 199
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H+PL+L + + LSKR
Sbjct: 200 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 259
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G + ++F++++ ++
Sbjct: 260 HGATSVEHFRREGILSRALMNYLALLGWR-VEGD-----EIFTIEEKLQS---------- 303
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +R + ++ L
Sbjct: 304 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMR-------RIDLEDLK 338
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ + +D+ Y + L E++ L L D + ++ E +
Sbjct: 339 REFIEWAKYAGKEIP-SVDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYE----Y 391
Query: 502 PVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+ K + +LE + + + + + LR+ S + +L+R
Sbjct: 392 EKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRG 451
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+++G P + E +E+L KE T++RL L++
Sbjct: 452 AVTGKLVTPGLFETIEVLGKERTLKRLERTLQF 484
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 | Back alignment and structure |
|---|
Score = 449 bits (1156), Expect = e-152
Identities = 151/573 (26%), Positives = 246/573 (42%), Gaps = 115/573 (20%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
VRVRFAPSPT G LH
Sbjct: 128 ELVRVRFAPSPT--------------------------------------------GHLH 143
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
+GG RTAL+N++FA+ G FILRIEDTD R E +++ + L+W G+ DE +GG
Sbjct: 144 VGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGG 203
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
++GPY QS+RL +Y++ + L+ + AY + K
Sbjct: 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS-----------------KELFT 246
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNE--GDPVIIKSDGFPTY 261
T E E ++ I+FK+ S++DL+ G + F N D +I+KS+GFPTY
Sbjct: 247 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME---FDNSTLEDFIIMKSNGFPTY 303
Query: 262 HFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKR 321
+FA VVDDH M ISHV RG + +T K ++IY+AFGW P F H+PL+L + + LSKR
Sbjct: 304 NFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 363
Query: 322 QGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRI 381
G SVE R L AL+N++ G + ++F++++ ++
Sbjct: 364 HGATSVEHFRREGILSRALMNYLALLGWR-VEGD-----EIFTIEEKLQS---------- 407
Query: 382 KPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLV 441
FD + ++ D L N +R + ++ L
Sbjct: 408 ------------------FDPKDISNKGVIFDYQKLEWVNGKHMR-------RIDLEDLK 442
Query: 442 EKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLSQH 501
+ + +D+ Y + L E++ L L D + ++ E +
Sbjct: 443 REFIEWAKYAGKEIP-SVDERYFSETLRICREKVNTLSQLY--DIMYPFMNDDYE----Y 495
Query: 502 PVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRT 560
+ K + +LE + + + + + LR+ S + +L+R
Sbjct: 496 EKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRG 555
Query: 561 SLSGLKQGPSVGEMMEILTKENTIRRLRDVLEY 593
+++G P + E +E+L KE T++RL L++
Sbjct: 556 AVTGKLVTPGLFETIEVLGKERTLKRLERTLQF 588
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 | Back alignment and structure |
|---|
Score = 445 bits (1146), Expect = e-151
Identities = 164/578 (28%), Positives = 248/578 (42%), Gaps = 104/578 (17%)
Query: 26 VRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLHLG 85
VRVR APSPT G LH+G
Sbjct: 2 VRVRLAPSPT--------------------------------------------GNLHIG 17
Query: 86 GLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNY 145
RTA++N+L+A+ G FILRIEDTD+ R PE E + + L+W+G+ DE
Sbjct: 18 TARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE-------- 69
Query: 146 GPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQ 205
GPY QS RL LY++ +QTLL G AY C+C+ L +R + G P+YDN+ R+LT
Sbjct: 70 GPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTP 129
Query: 206 EQIDEKLKENSKYCIRFKL-TNHTESWQDLVYGDISYNVFHNEGDPVIIKSD-----GFP 259
E+ IRFK+ + WQDLV G +S+ GD VI ++ G+P
Sbjct: 130 EEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYP 189
Query: 260 TYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319
Y+ VVDD M I+ V+RG + +T K IL+Y+A G TPP FAH PL+LN G KLS
Sbjct: 190 LYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLS 249
Query: 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYN 379
KR G S+ R +L AL N++T G + +LF++ +
Sbjct: 250 KRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVG----ELFTLDLAAKH-------- 297
Query: 380 RIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRS 439
F + +N+ + D LN NR I+ Q E
Sbjct: 298 --------------------FSFERINKAGARFDWDKLNWLNRQYIQ-------QLEPEE 330
Query: 440 LVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVKPSIEHLS 499
+ +L + D +L + + L++ + + F + +
Sbjct: 331 FLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSVTFDS-- 388
Query: 500 QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLR 559
E+ ++ + IL +L+ L T +++ + GV+ M+ LR
Sbjct: 389 ----EAMAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLR 444
Query: 560 TSLSGLKQGPSVGEMMEILTKEN-TIRRLRDVLEYSRT 596
+L+G GP + +IL + RL L+ ++T
Sbjct: 445 AALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQAQT 482
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Length = 298 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-110
Identities = 84/317 (26%), Positives = 127/317 (40%), Gaps = 69/317 (21%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
+ RFAPSP+ G LH
Sbjct: 4 TQYIGRFAPSPS--------------------------------------------GELH 19
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
G L AL +YL A++ G +++RIED D R VP A E + + L+ G+ D
Sbjct: 20 FGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG------ 73
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
QS+R Y++ + L G +Y C C+ +R+ I YD CR L
Sbjct: 74 --DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG---------GIYDGHCRVL 122
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF 263
+ +R + + + D + G I + D +I + DG Y+
Sbjct: 123 HHGPDNAA--------VRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNL 174
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDDH ++ ++RG + T + I +Y+ FGW P + HLPL LN G+KLSK+
Sbjct: 175 AVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH 234
Query: 324 DMSVEAIRNSEFLPNAL 340
++ L AL
Sbjct: 235 APALPKGDPRPVLIAAL 251
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 51/295 (17%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G R A+ N+ +A+ ++G ILRIEDTD R PEA + + DL+W+GV DE
Sbjct: 107 GPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-- 164
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+QS R+ Y + + L+ G AY C C ++
Sbjct: 165 -------TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEAC--------H 209
Query: 200 CRNLTQE---QIDEKLKE--NSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNEGDPVI 252
CR+L Q ++ E +R K L + + +D V I G
Sbjct: 210 CRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR 269
Query: 253 IKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPK---FAHLPL 309
+ +P +F+ VDDH + ++HVLRG + + K +Y+ GW PP+ +
Sbjct: 270 V----YPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGR--- 322
Query: 310 LLNLNGSKLSKR-------QGDMS---------VEAIRNSEFLPNALINFVTNFG 348
L ++ LS +G+ S + AI P A+ + G
Sbjct: 323 -LKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 4e-12
Identities = 63/394 (15%), Positives = 113/394 (28%), Gaps = 99/394 (25%)
Query: 232 QDLVYGDISYNVFHNEGDPVIIKSDGFPTYH--------FANVVDDHHMNISHVLRGVEW 283
Y DI + E + F + DH + + G
Sbjct: 14 HQYQYKDI---LSVFEDA---FVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 284 QIST--TKHILIYKAF---------GWTPPKFAHLP----LLLNLNGSKLSKRQGD---- 324
T +K + + F + ++ + + + D
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 325 --MSVEAIRNSEFLPNALIN-----FVTNFG-GGFHDHQRTSKSQLFSMKDLVEKVCNNA 376
+V ++ L AL+ V G G K+ + VC +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS------GKTWV------ALDVCLSY 174
Query: 377 TYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR-----AEIRRVMST 431
F IFW L L N NS + L L + R S+
Sbjct: 175 KVQCKMD----FKIFW---------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 432 GTQEEIRSLVEKLKQHIVNE-FPNSSLQIDDDYLNYVLCWASERI--FKLQ--------D 480
+ I S+ +L++ + ++ + N L + + V ++ F L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----V--QNAKAWNAFNLSCKILLTTRF 274
Query: 481 LVGKDF--AFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCD--PFTRDSL 536
DF A S++H S K +L L +PR + P +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSII 333
Query: 537 ATPLREF-STEQGVEYSTFMKLLRT---SLSGLK 566
A +R+ +T ++ KL SL+ L+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 90/552 (16%), Positives = 170/552 (30%), Gaps = 160/552 (28%)
Query: 87 LRTALYNYLFAKSHNGS------FILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESET 140
+ T +Y + +N + + R++ + R +A+ +L + K + + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLEL-RPAKNVLI-----DG 157
Query: 141 VGGNYGPYLQSKR-LA---LYQKEVQTLLHNGSAY----KCFCSDSRL----NLIRKDAV 188
V G G K +A +VQ + + C ++ L L+ +
Sbjct: 158 VLG-SG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--- 208
Query: 189 KSGLVPKYDNKCRN-----LTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNV 243
+ P + ++ + L I +L+ K + LV ++
Sbjct: 209 ---IDPNWTSRSDHSSNIKLRIHSIQAELRR------LLKSKPYENCL--LVLLNVQ--- 254
Query: 244 FHNEGDPVIIKSDGFP-------TYHFANVVDDHHMNISHVLRGVEWQISTTKHI-LIYK 295
+ + F T F V D L +TT HI L +
Sbjct: 255 -----NAKAWNA--FNLSCKILLTTRFKQVTD--------FLSA-----ATTTHISLDHH 294
Query: 296 AFGWTPPKFAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQ 355
+ TP + + +L L R D+ E + + ++ D
Sbjct: 295 SMTLTPDE------VKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIAESIRDGL 341
Query: 356 RTSKSQLFSMKDLVEKVCNNATYNRIKPTI-----KEFGIF--------------WF--- 393
T + D + + ++ N ++P +F WF
Sbjct: 342 ATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 394 ----QTFFNEF-DLQLVNENSCK---------VDLTNLNEFNRAEIRRVMSTGTQEEIRS 439
N+ LV + + ++L E N + R S
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHR-----------S 448
Query: 440 LVEKLKQHIVNEFPNSSLQIDDDY----LNYVLCWA--SERIFKLQDLVGKDFAFIWVKP 493
+V+ + + D Y + + L ER L +V DF F+ K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQK- 506
Query: 494 SIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF--STEQGVEY 551
I H + G + LN TL L+ P + DP + L + +F E+ +
Sbjct: 507 -IRH-DSTAWNASGSI-LN-TLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLIC 561
Query: 552 STFMKLLRTSLS 563
S + LLR +L
Sbjct: 562 SKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 52/341 (15%), Positives = 102/341 (29%), Gaps = 121/341 (35%)
Query: 52 YNRCEKLWITEGLRSSI----PLKLKHFLTSTGLLHLGGLRTALYNYLFAKSHNGSFILR 107
+ C+KL T + SS+ P + + +++ L +
Sbjct: 349 HVNCDKL--TTIIESSLNVLEPAEYRK----------------MFDRLS--------VFP 382
Query: 108 IEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHN 167
+P + L L W V+ + V LH
Sbjct: 383 -PSAH----IPTIL--LS--LIWFDVIKSDVM--------------------VVVNKLHK 413
Query: 168 GSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227
S L+ K K + + ++ K+K ++Y + + +H
Sbjct: 414 YS------------LVEKQP-KESTISIPS-----I---YLELKVKLENEYALHRSIVDH 452
Query: 228 TESWQDLVYGDISYNV---FHNEGDPVIIKSDGFPTYHFANVVDDHHM-NISHVLRGVEW 283
YN+ F ++ D + D + H HH+ NI H R +
Sbjct: 453 -------------YNIPKTFDSD-DLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLF 493
Query: 284 QISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS-----KRQGDMSVEAIRNSEFLPN 338
+ +++ F + K H N +GS L+ K + E L N
Sbjct: 494 R-------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 339 ALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYN 379
A+++F+ + T ++ M + + A +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE------DEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 84/228 (36%)
Query: 352 HDHQRTSKSQL-FSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSC 410
H H + + KD++ +F F + FD + V +
Sbjct: 4 HHHMDFETGEHQYQYKDILS-------------------VF-EDAFVDNFDCKDVQD--- 40
Query: 411 KVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW 470
+ ++S EEI HI+ ++ L + L
Sbjct: 41 -------------MPKSILSK---EEI--------DHIIMS-KDAVSGTL--RLFWTLLS 73
Query: 471 ASERIFK--LQDLVGKDFAFIWVKPSIEHLSQHPV----ESYGKVMLNLTLGILEHLIPR 524
E + + +++++ ++ F+ E + + N ++ + R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 525 LQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVG 572
LQ P+ + LR +L L+ +V
Sbjct: 134 LQ---PYLK------------------------LRQALLELRPAKNVL 154
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 76/538 (14%), Positives = 152/538 (28%), Gaps = 70/538 (13%)
Query: 76 LTSTGLLHLGGLR-----TALYNYLFAKSHNGSFILRIEDTDQTRFVPEAV-EKLEQDLK 129
+T +G +H+G R + + L K + I +D D+ R VP V ++ + L
Sbjct: 28 ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLG 87
Query: 130 W-IGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAV 188
I VPD +Y + ++ +++ + A + + IR
Sbjct: 88 MPISEVPDPWGC-HESYAEHFM-RKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFE 145
Query: 189 KSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEG 248
K K + L EN + + + E+ G EG
Sbjct: 146 KR---DKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEG 202
Query: 249 DPV---IIKSDGFPTYHFANVVDDHHMNISHVLRGVE----WQISTTKHILIYKAFGWTP 301
I + + + H + G + T +I + +G
Sbjct: 203 HEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEA 262
Query: 302 PK-FAHLPLLLNLNGSKLSKRQGD----------MSVEAIRNSEFLPNALINFVTNFGGG 350
P + + + K+S +G+ + +R + G G
Sbjct: 263 PLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLG 322
Query: 351 FHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSC 410
+ + + ++ R L ++
Sbjct: 323 ILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLVAQAPFRFLAVL----- 377
Query: 411 KVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW 470
V EE V + HI + ++ +N W
Sbjct: 378 -----------------VQLPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNW 420
Query: 471 ASERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDP 530
K +A VK SI + P + + + + L+ +
Sbjct: 421 V------------KKYAPEDVKFSIL--EKPPEVEVSEDVREA----MNEVAEWLENHEE 462
Query: 531 FTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
F+ + L E + +G+ + L G ++GP + + L + I+RLR
Sbjct: 463 FSVEEFNNILFEVAKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDRSFVIKRLR 520
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 66/308 (21%), Positives = 107/308 (34%), Gaps = 69/308 (22%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G HLG + +L ++ A+ + G F LR++DT+ E V+ + DLKW+G+ E
Sbjct: 77 GYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHF 136
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y Y Q L+ G AY S L+ +R +A G +
Sbjct: 137 YYASDYFD-------RYYAYAEQ-LIRQGDAYVESVSPEELSRLRGNATTPG----TPSP 184
Query: 200 CRNLTQEQIDEKLK----------ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNE 247
R+ + ++E L + ++ +R K LT +D V I
Sbjct: 185 YRDRS---VEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRT 241
Query: 248 GDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW-------- 299
D I +P Y F + + D ++H + +E+ + IY W
Sbjct: 242 SDEWHI----YPAYDFEHPLQDAIEGVTHSMCSLEFVD----NRAIYD---WLMEKLNFD 290
Query: 300 TPPK---FAHLPLLLNLNGSKLSKRQGDMSVE----------------AIRNSEFLPNAL 340
P F L + SKR+ V+ A R P A+
Sbjct: 291 PRPHQYEFGR----RGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAV 346
Query: 341 INFVTNFG 348
F G
Sbjct: 347 RAFAAQIG 354
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 61/305 (20%), Positives = 117/305 (38%), Gaps = 63/305 (20%)
Query: 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESE 139
G LH+G ++ N+ A+ + G LR +DT+ + E VE ++ D++W+G +
Sbjct: 37 GYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNV 96
Query: 140 TVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK 199
+Y L+ ++ L++ G AY + ++ R + P ++
Sbjct: 97 RYSSDYFD-------QLHAYAIE-LINKGLAYVDELTPEQIREYRGTLTQ----PGKNSP 144
Query: 200 CRNLTQEQIDEKLK----------ENSKYCIRFK--LTNHTESWQDLVYGDISYNVFHNE 247
R+ + ++E L E K C+R K + + +D V I + H
Sbjct: 145 YRDRS---VEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQT 201
Query: 248 GDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPP 302
G+ I +P Y F + + D I+H L +E+Q + +Y P
Sbjct: 202 GNKWCI----YPMYDFTHCISDALEGITHSLCTLEFQD----NRRLYDWVLDNITIPVHP 253
Query: 303 K---FAHLPLLLNLNGSKLSKRQGDMSVE----------------AIRNSEFLPNALINF 343
+ F+ LNL + +SKR+ ++ V +R + ++ F
Sbjct: 254 RQYEFSR----LNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 344 VTNFG 348
G
Sbjct: 310 CKRIG 314
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 100.0 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 100.0 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 100.0 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 100.0 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 100.0 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 100.0 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 100.0 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 100.0 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 100.0 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 100.0 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 100.0 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.91 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 99.88 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 99.88 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 99.86 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.86 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 99.84 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 99.82 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 99.79 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.77 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 99.71 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 99.7 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 99.69 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 99.68 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.66 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 99.63 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 99.57 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.52 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 99.36 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 99.26 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 99.14 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 99.07 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 98.96 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 98.95 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 98.9 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 98.83 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 98.83 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 98.79 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 98.76 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 98.41 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 98.27 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 97.97 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 97.93 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 97.85 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 97.81 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 97.79 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 97.76 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 97.73 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 97.71 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 97.68 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 97.54 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 97.51 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.48 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 97.45 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 97.41 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 97.4 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 97.35 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 97.28 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 97.27 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 97.23 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 97.21 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.17 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 97.07 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 97.01 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 96.98 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 96.97 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 96.77 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 96.28 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 95.68 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 94.08 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 93.82 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 92.81 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 91.64 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 90.73 |
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-130 Score=1087.79 Aligned_cols=472 Identities=36% Similarity=0.613 Sum_probs=425.8
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||.+||+||||+||+|+++|++
T Consensus 35 G~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~ 114 (512)
T 4gri_A 35 GLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQ 114 (512)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||++|+++.|+.+.+.+.+|.|++.||+++.++..++...|.++++|||+|. +.+.|+|+|+|+
T Consensus 115 ~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~D~v~g~ 194 (512)
T 4gri_A 115 YAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDILLGR 194 (512)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEE
T ss_pred HHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCceeeccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+..+...+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||++.+|+||
T Consensus 195 i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kL 274 (512)
T 4gri_A 195 ITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKL 274 (512)
T ss_dssp EEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBC
T ss_pred EEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEEecchhcccccccc
Confidence 99987777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+.+|.+||++||+|+||+|||++||||. ++.+|+||++||++
T Consensus 275 SKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~-----~~~~Eifs~~eli~---------------------------- 321 (512)
T 4gri_A 275 SKRHGSTALRQFIEDGYLPEAIINYVTLLGWSY-----DDKREFFSKNDLEQ---------------------------- 321 (512)
T ss_dssp CTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCS-----SSSCCCCCHHHHHH----------------------------
T ss_pred CcccccccHHHHHHcCCChHHHHHHHHHhCCCC-----cccchhhhHHHHHH----------------------------
Confidence 999999999999999999999999999999988 56789999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCC-C-CCCCCHHHHHHHHHHhhcccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPN-S-SLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~-~~~~~~~~l~~vl~l~~~ri~ 476 (605)
.||+++|+++||+||++||.|||++||++++.+ ++++.+.+++.+.... . ....+.+++..++.++++|++
T Consensus 322 ~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~-------~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~ 394 (512)
T 4gri_A 322 FFSIEKINKSPAIFDYHKLDFFNSYYIREKKDE-------DLFNLLLPFFQKKGYVSKPSTLEENQKLKLLIPLIKSRIK 394 (512)
T ss_dssp HCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcCCCCCCccccHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCcccccchhhHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998533 4888888888754321 1 122346799999999999999
Q ss_pred chHhhhhhhhhccccCCC-cCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHH
Q psy16872 477 KLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFM 555 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf 555 (605)
++.|+++. ..|||..|. +..++. .. .+...+.+..+|+.+.+.|+..++|+.++++++++++++++|+|+|++|
T Consensus 395 ~l~di~~~-~~~ff~~~~~~~~de~-~~---~k~~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~K~k~l~ 469 (512)
T 4gri_A 395 KLSDALNM-TKFFYEDIKSWNLDEF-LS---RKKTAKEVCSILELIKPILEGFEKRSSEENDKIFYDFAESNGFKLGEIL 469 (512)
T ss_dssp STTHHHHH-THHHHSCCCCCCGGGC-----------CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHC---CHHHH
T ss_pred cHHHHHHH-HHHHhcCCCccCccHH-HH---HHhhHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999998 677776653 222211 11 1112234555666666666666789999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhc
Q psy16872 556 KLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRT 596 (605)
Q Consensus 556 ~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~ 596 (605)
||||+||||+.+||+|+++|++|||++|++||++|++.|+.
T Consensus 470 ~pLR~ALTG~~~GP~L~~i~~lLGkeevl~RL~~Al~~lk~ 510 (512)
T 4gri_A 470 LPIRIAALGSKVSPPLFDSLKLIGKSKVFERIKLAQEFLRI 510 (512)
T ss_dssp HHHHHHHSSSSSCSCHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcCcCHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999865
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-125 Score=1040.39 Aligned_cols=467 Identities=27% Similarity=0.454 Sum_probs=419.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|||||||++||++||+|||||||||++|+++++++.|+++|+||||+|||||++|||||||+||+|+++|++
T Consensus 17 G~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~QS~r~~~y~~ 96 (498)
T 2ja2_A 17 GTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRD 96 (498)
T ss_dssp SSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeeeecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
+|++|+++|+||+||||++||++.| ++.+.|.+|+|+|+||+++++|+.++..+|+++|||||+|++.+.|+|+|+|++
T Consensus 97 ~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 175 (498)
T 2ja2_A 97 VLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 175 (498)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEE
T ss_pred HHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEEEecccceE
Confidence 9999999999999999999999999 777778889999999999999999888999999999999977899999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc-----CCCCCcEEEecceecCC
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF-----GWTPPKFAHLPLLLNLN 314 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al-----G~~~P~f~H~plil~~d 314 (605)
.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++| ||++|.|+|+||++|.+
T Consensus 176 ~~~~~-~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~ 254 (498)
T 2ja2_A 176 TFAAG-SVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEG 254 (498)
T ss_dssp EECTT-CSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSS
T ss_pred eeccc-ccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCC
Confidence 99865 4699999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccc
Q psy16872 315 GSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQ 394 (605)
Q Consensus 315 g~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (605)
|+|||||+|+++|.+||++||+|+||+||++++||+. .++.++||++||++
T Consensus 255 g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~-----~~~~e~~s~~eli~------------------------ 305 (498)
T 2ja2_A 255 TKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSI-----ADDHDLFGLDEMVA------------------------ 305 (498)
T ss_dssp SSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCS-----CSSCCCCCHHHHHH------------------------
T ss_pred CCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCC-----CcccccCCHHHHHh------------------------
Confidence 9999999999999999999999999999999999986 45679999999999
Q ss_pred cccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcc
Q psy16872 395 TFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASER 474 (605)
Q Consensus 395 ~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~r 474 (605)
.|++++|+++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ...+.+++.+++.++++|
T Consensus 306 ----~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~-------~l~~~l~~~l~~~~~~--~~~~~~~l~~~~~~~~~r 372 (498)
T 2ja2_A 306 ----AFDVADVNSSPARFDQKKADALNAEHIRMLDVG-------DFTVRLRDHLDTHGHH--IALDEAAFAAAAELVQTR 372 (498)
T ss_dssp ----HCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHTTS
T ss_pred ----hCChhhcCccccccCHHHHHHhhHHHHHhcCHH-------HHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999997533 4788888877643211 123568999999999999
Q ss_pred ccchHhhhhhhhhccccCCCc-CccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHH-HHHHhCCChh
Q psy16872 475 IFKLQDLVGKDFAFIWVKPSI-EHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLRE-FSTEQGVEYS 552 (605)
Q Consensus 475 i~~l~dl~~~~~~ff~~~p~~-~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~-~~~e~giK~k 552 (605)
++++.|+++. ..|||..|.+ +++.. .+........+|+++++.|+..++|+.++|++.+++ +++++|+|++
T Consensus 373 ~~~l~e~~~~-~~~~f~~~~~~~~~~~------~k~l~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~v~~~~g~k~k 445 (498)
T 2ja2_A 373 IVVLGDAWEL-LKFFNDDQYVIDPKAA------AKELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPR 445 (498)
T ss_dssp CSSTTHHHHH-HGGGSTTTCCCCHHHH------HHHSSHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTTCCCHH
T ss_pred CCcHHHHHHH-HHHhcCCcccccHHHH------HHhccHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999998 6677732323 11110 111112345566666677776667999999999999 9999999999
Q ss_pred hHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhcc
Q psy16872 553 TFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRTV 597 (605)
Q Consensus 553 ~lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~~ 597 (605)
++|||||+||||+.+||+|+++|++|||+++++||++|++.+++.
T Consensus 446 ~lf~pLR~ALtG~~~GP~L~~~~~lLGke~~l~RL~~al~~~~~~ 490 (498)
T 2ja2_A 446 KAFSPIRVAATGTTVSPPLFESLELLGRDRSMQRLRAARQLVGHA 490 (498)
T ss_dssp HHHHHHHHHHHSSSSCSCHHHHHHHHCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-123 Score=1014.55 Aligned_cols=454 Identities=35% Similarity=0.602 Sum_probs=413.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+|++|||||||+||+|+++|++
T Consensus 12 G~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~ 91 (468)
T 1j09_A 12 GDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQK 91 (468)
T ss_dssp SSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
+|++|+++|+||+||||+++|+++|+++. +|+|+||+++.+|+.+++++|+++|||||+|. +.+.|+|+|+|+
T Consensus 92 ~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~ 165 (468)
T 1j09_A 92 YAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGV 165 (468)
T ss_dssp HHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEE
T ss_pred HHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecccee
Confidence 99999999999999999999999887642 79999999999999999999999999999995 578999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+||++|.+|+||
T Consensus 166 ~~~~~~-~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~kl 244 (468)
T 1j09_A 166 VVYDNQ-EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTKI 244 (468)
T ss_dssp EEEEGG-GSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSCBC
T ss_pred Eeeccc-CCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCCcc
Confidence 999854 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+.+|.+||++||+|+||+|||+++||+. .+..++||++||++
T Consensus 245 SKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~-----~~~~~~~~~~el~~---------------------------- 291 (468)
T 1j09_A 245 SKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSM-----PDGREIFTLEEFIQ---------------------------- 291 (468)
T ss_dssp CTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCC-----TTCCSCCCHHHHHH----------------------------
T ss_pred ccccchhhHHHHHHCCCCHHHHHHHHHHhccCC-----cccccCCCHHHHHh----------------------------
Confidence 999999999999999999999999999999886 45668999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHh-hccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRR-VMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++|+++|++||++||.|+|++||+. ++ .+ ++++.+.+++.+.... ..+.+++.+++.++++|+++
T Consensus 292 ~f~~~~~~~~~~~~d~~kl~~~N~~~i~~~~~-~~------~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~ 361 (468)
T 1j09_A 292 AFTWERVSLGGPVFDLEKLRWMNGKYIREVLS-LE------EVAERVKPFLREAGLS---WESEAYLRRAVELMRPRFDT 361 (468)
T ss_dssp HCCGGGCCCSCCBCCHHHHHHHHHHHHHHTSC-HH------HHHHHHHHHHHHTTCC---CSCHHHHHHHHHHHGGGCSS
T ss_pred hCChhhcCccccccChHHhhhhcHHHHHhcCC-HH------HHHHHHHHHHHHcCCC---cccHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999998 54 32 5788888887754321 13568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+.|+++. ..|||..|....+. ...+.. .. ..+|+++++.|++.++|+.+++++.++++++++|+|+|++|||
T Consensus 362 l~e~~~~-~~~~f~~~~~~~~~-----~~~k~~-~~-~~~L~~~~~~L~~~~~w~~e~i~~~ik~v~~~~g~K~k~lf~P 433 (468)
T 1j09_A 362 LKEFPEK-ARYLFTEDYPVSEK-----AQRKLE-EG-LPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQP 433 (468)
T ss_dssp TTHHHHH-SGGGTCSCCCCCHH-----HHHHHH-HH-HHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHH-HHHHhcCCCccCHH-----HHHhcc-cH-HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 67777655321110 011122 23 5667777777776667999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||+++++||++|+
T Consensus 434 LR~ALTG~~~GP~L~~im~lLGkeetl~RL~~al 467 (468)
T 1j09_A 434 LRAALTGSLETPGLFEILALLGKERALRRLERAL 467 (468)
T ss_dssp HHHHHHSCSCCSCHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHhCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-124 Score=1026.59 Aligned_cols=454 Identities=27% Similarity=0.489 Sum_probs=338.2
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++ ||+||+|+++|++
T Consensus 36 G~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~--------~~~qS~r~~~y~~ 107 (490)
T 4g6z_A 36 GFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEG--------PYYQMQRMDRYRE 107 (490)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEE--------EEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCC--------CcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcC-CCccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLT-NHTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~-~~~~~~~D~v~G~ 238 (605)
++++|+++|+||+||||++||+++|+++.+.|.+|+|||+||++++++. +...+|.+++||||+| .+.+.|+|.|+|.
T Consensus 108 ~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~ 186 (490)
T 4g6z_A 108 VLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL-PEPPAGVAPVLRFRNPLTGTVAWDDAVKGR 186 (490)
T ss_dssp HHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC-CCCCTTCCCEEEECCCCSSEEEEEETTTEE
T ss_pred HHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh-hhhhcCCCceEEEecCCCCcEEEEEeeeee
Confidence 9999999999999999999999999888888888999999999986542 2345688999999998 5688999999999
Q ss_pred eeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccc
Q psy16872 239 ISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKL 318 (605)
Q Consensus 239 i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KL 318 (605)
+++++. ..+||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|.+|+||
T Consensus 187 ~~~~~~-~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g~KL 265 (490)
T 4g6z_A 187 VEISNE-ELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKM 265 (490)
T ss_dssp EEEEGG-GCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTSSBC
T ss_pred eeeccc-cCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCCCcc
Confidence 999854 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccccc
Q psy16872 319 SKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFN 398 (605)
Q Consensus 319 SKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (605)
|||+|+++|.+||++||+|+||+|||+++||+. .++++||++||++
T Consensus 266 SKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~------~~~e~~s~~eli~---------------------------- 311 (490)
T 4g6z_A 266 SKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSH------GDAEIFTREQFVE---------------------------- 311 (490)
T ss_dssp CTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCC------TTCCCCCHHHHHH----------------------------
T ss_pred cCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCC------CCccccCHHHHHh----------------------------
Confidence 999999999999999999999999999999886 4679999999999
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.|++++|+++|++||++||.|||++||++++.+ ++++.+.+++.+.........+.+|+.+++.++++|++++
T Consensus 312 ~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~-------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 384 (490)
T 4g6z_A 312 WFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDA-------RLAGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTV 384 (490)
T ss_dssp HCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHTTTCCHHHHHHSSCHHHHHHHHCTTCSSH
T ss_pred hCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHHHcCCCccccccHHHHHHHHHHHHHhcCcH
Confidence 999999999999999999999999999987432 5888888888753211000012358999999999999999
Q ss_pred HhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLL 558 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pL 558 (605)
.|+++. ..|||..|..+.+.. .+...+.+..+|+++++.|+..+ |+.+++++.++++++++|+|+|++||||
T Consensus 385 ~e~~~~-~~~~f~~~~~~~~~~------~~~~~~~~~~iL~~~~~~L~~~~-~~~e~i~~~ik~~~~~~glK~k~lf~PL 456 (490)
T 4g6z_A 385 KEIAEN-SAMFYRAPAPGADAL------AQHVTDAVRPALVEFAAALKTVE-WTKEAIAAALKAVLGAHKLKMPQLAMPV 456 (490)
T ss_dssp HHHHHH-HGGGTSCCC----------------------------------------------------------------
T ss_pred HHHHHH-HHHHcCCCCCCHHHH------HhhcCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998 788887765422111 11122345567777777777555 9999999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHH
Q psy16872 559 RTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLE 592 (605)
Q Consensus 559 RiALTG~~~GP~L~eim~lLGkee~l~RL~~al~ 592 (605)
|+||||+.+||+|+++|++|||++|++||++|++
T Consensus 457 RvALTG~~~GP~L~eil~LLGKeetL~RL~~ala 490 (490)
T 4g6z_A 457 RLLVAGTTHTPSIDAVLLLFGRDVVVSRIEAALA 490 (490)
T ss_dssp --------CCSCHHHHHHHSCHHHHHHHHHCC--
T ss_pred HHHHcCCCCCCCHHHHHHHhCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-119 Score=991.03 Aligned_cols=464 Identities=33% Similarity=0.532 Sum_probs=417.0
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+||||||||||||||+||++||+|||||||||++|+++++++.|+++|+||||+|||+ ||+||+|+++|++
T Consensus 12 G~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~--------~~~QS~r~~~y~~ 83 (492)
T 2cfo_A 12 GNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEG--------PYFQSDRLDLYRQ 83 (492)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEE--------EEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCC--------CccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-Cccceeccccce
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-HTESWQDLVYGD 238 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~~~~~~D~v~G~ 238 (605)
++++|+++|+||+||||+++|+++|+++.+.|.+|+|+++||+++.+|+.+++.+|.++|||||+|. +.+.|+|+|+|.
T Consensus 84 ~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~ 163 (492)
T 2cfo_A 84 AIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGR 163 (492)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEE
T ss_pred HHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceee
Confidence 9999999999999999999999999998888888999999999999999999999999999999986 588999999999
Q ss_pred eeecCCCCC-CCcEEEecC-----CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceec
Q psy16872 239 ISYNVFHNE-GDPVIIKSD-----GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLN 312 (605)
Q Consensus 239 i~~~~~~~~-~D~Vi~ksD-----G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~ 312 (605)
+.+++. .. +||||+|+| |+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|
T Consensus 164 ~~~~~~-~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~ 242 (492)
T 2cfo_A 164 VSWQGA-DLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILN 242 (492)
T ss_dssp EEEEGG-GGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEEC
T ss_pred eeeccc-ccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEEC
Confidence 999854 46 899999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccc
Q psy16872 313 LNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFW 392 (605)
Q Consensus 313 ~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~ 392 (605)
.+|+|||||+|+++|.+||++||+|+||+|||+++||+.. .+.+++||++||++
T Consensus 243 ~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~----~~~~e~~~~~e~i~---------------------- 296 (492)
T 2cfo_A 243 STGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPP----EGVGELFTLDLAAK---------------------- 296 (492)
T ss_dssp SSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCC----TTTCSCCCHHHHHH----------------------
T ss_pred CCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCC----CccccccCHHHHHh----------------------
Confidence 9999999999999999999999999999999999998751 24568999999999
Q ss_pred cccccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhC-CCCCCCCCHHHHHHHHHHh
Q psy16872 393 FQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEF-PNSSLQIDDDYLNYVLCWA 471 (605)
Q Consensus 393 ~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~l~~vl~l~ 471 (605)
.|++++|+++|++||++||.|||++||++++.+ ++++.+.+++.+.. ... ...+.+|+.+++.++
T Consensus 297 ------~f~~~~i~~~~~~~d~~kl~~~N~~~i~~~~~~-------~l~~~~~~~l~~~g~~~~-~~~~~~~l~~~~~~~ 362 (492)
T 2cfo_A 297 ------HFSFERINKAGARFDWDKLNWLNRQYIQQLEPE-------EFLAELIPLWQGAGYAFD-EERDRPWLFDLAQLL 362 (492)
T ss_dssp ------HCCSTTBCSSCEECCHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHHHTCCCC-TTTTHHHHHHHHHHH
T ss_pred ------hcChhhcCccccccCHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHhcCCcCc-ccccHHHHHHHHHHH
Confidence 999999999999999999999999999987532 47888888776542 111 113457999999999
Q ss_pred hccccchHhhhhhhhhccccCCC-cCccCCCCccchhhHHHH-HHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCC
Q psy16872 472 SERIFKLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLN-LTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGV 549 (605)
Q Consensus 472 ~~ri~~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~-~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~gi 549 (605)
++|+.++.|+++. ..|||..+. ++... .+.... ....+|+++++.|++.++|+.+++++.++++++++|+
T Consensus 363 ~~r~~~l~e~~~~-~~~~f~~~~~~~~~~-------~k~l~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~ 434 (492)
T 2cfo_A 363 QPGLNTLREAIDQ-GAVFFIPSVTFDSEA-------MAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGV 434 (492)
T ss_dssp GGGCSSGGGHHHH-HHHHHSSSCCCCHHH-------HHHHTSTTHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHTC
T ss_pred hccCCcHHHHHHH-HHHHhcCCCChhHHH-------HHhcCchhHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999998 667776542 22110 111111 3455677777777766679999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCCHHHHHHHhCHHH-HHHHHHHHHHHhhccccc
Q psy16872 550 EYSTFMKLLRTSLSGLKQGPSVGEMMEILTKEN-TIRRLRDVLEYSRTVKNS 600 (605)
Q Consensus 550 K~k~lf~pLRiALTG~~~GP~L~eim~lLGkee-~l~RL~~al~~l~~~~~~ 600 (605)
|++++|||||+||||+.+||+|+++|++|||++ +++||++|++.++|+..+
T Consensus 435 k~~~lf~pLR~aLtG~~~GP~l~~~~~lLGke~~~l~Rl~~al~~~~~~~~~ 486 (492)
T 2cfo_A 435 KKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQAQTTSLE 486 (492)
T ss_dssp CHHHHHHHHHHHHHSSSSCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-C
T ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHhCCcHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999999999 999999999999776543
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-120 Score=996.33 Aligned_cols=452 Identities=31% Similarity=0.533 Sum_probs=400.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++|++|||||||+||||+++
T Consensus 33 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~ 112 (488)
T 3afh_A 33 SPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEI 112 (488)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHH
Confidence 55599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccc
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVY 236 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~ 236 (605)
|++++++|+++|+||+||||++||++. ..|.|+++| +++++|+++|||||+|++.+.|+|+|+
T Consensus 113 y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~---------~~~~~G~~~~iR~k~~~~~~~~~D~v~ 175 (488)
T 3afh_A 113 YREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVLPGKTSFEDLLK 175 (488)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCH---------HHHHTTCCEEEEECCCSSEEEEEETTT
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchh---------hHHhcCCCceEEEECCCCceeEEeccc
Confidence 999999999999999999999998643 246899872 356789999999999977889999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|.+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|||+|.+|+
T Consensus 176 G~~~~~~~-~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~ 254 (488)
T 3afh_A 176 GYMEFDNS-TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRT 254 (488)
T ss_dssp EEEEEEGG-GSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSS
T ss_pred eeEeecCC-CCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCC
Confidence 99999854 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTF 396 (605)
Q Consensus 317 KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (605)
|||||+|+++|.+||++||+|+||+|||+++||+. .++ +++|++||++
T Consensus 255 KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~-----~~~-e~~s~~e~i~-------------------------- 302 (488)
T 3afh_A 255 PLSKRHGATSVEHFRREGILSRALMNYLALLGWRV-----EGD-EIFTIEEKLQ-------------------------- 302 (488)
T ss_dssp BCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCC-----SSC-SCCCHHHHGG--------------------------
T ss_pred cccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----ccc-ccCCHHHHHh--------------------------
Confidence 99999999999999999999999999999999886 234 9999999999
Q ss_pred cccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhcccc
Q psy16872 397 FNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIF 476 (605)
Q Consensus 397 ~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~ 476 (605)
.|++++|+++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ....+.+++.+++.++++|++
T Consensus 303 --~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~-------~l~~~l~~~l~~~g~~-~~~~~~~~l~~~~~~~~~r~~ 372 (488)
T 3afh_A 303 --SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLE-------DLKREFIEWAKYAGKE-IPSVDERYFSETLRICREKVN 372 (488)
T ss_dssp --GCCGGGSCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHTCC-CCCCCHHHHHHHHHHHTTSCS
T ss_pred --hCChhhcCccccccChHHhhhccHHHHhcCCHH-------HHHHHHHHHHHHcCCC-cccccHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999997533 4788888887754210 111346899999999999999
Q ss_pred chHhhhhhhhhccccCCC-cCccC-CCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhh-
Q psy16872 477 KLQDLVGKDFAFIWVKPS-IEHLS-QHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYST- 553 (605)
Q Consensus 477 ~l~dl~~~~~~ff~~~p~-~~~~~-~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~- 553 (605)
++.|+++. ..|||..|. +++.. .+.+... ....+|+++++.|++.++|+.+++++.++++++ +|+|+++
T Consensus 373 ~l~el~~~-~~~~f~~~~~~~~~~~~k~l~~~------~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~-~g~k~k~~ 444 (488)
T 3afh_A 373 TLSQLYDI-MYPFMNDDYEYEKDYVEKFLKRE------EAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSE-KGLASKKV 444 (488)
T ss_dssp SHHHHHHH-HHHHHCSCCCCCHHHHHHTTTST------THHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHH-TTSSCHHH
T ss_pred cHHHHHHH-HHHHhCCCCCcCHHHHHhhcCch------hHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH-hCCChHHH
Confidence 99999998 677776543 22111 1111111 134455566666665567999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhhc
Q psy16872 554 FMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSRT 596 (605)
Q Consensus 554 lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~~ 596 (605)
+|||||+||||+.+||+|+++|++|||+++++||++|++.+++
T Consensus 445 lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~RL~~al~~~~~ 487 (488)
T 3afh_A 445 VFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKK 487 (488)
T ss_dssp HHHHHHHHHHSCSSCSCHHHHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987753
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-115 Score=961.23 Aligned_cols=454 Identities=33% Similarity=0.564 Sum_probs=416.3
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+|||||||++||++||+|||||||||++|++++++++|+++|+|||++||++|..||+||||+||+|+++|++
T Consensus 24 G~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~ 103 (481)
T 2o5r_A 24 GFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYRQSERVEIYRE 103 (481)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGGHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCc--CcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNK--CRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYG 237 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~--cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G 237 (605)
+|++|+++|+||+||||+++|++.|+.+.+.|.+|.||+. ||+++.+|+.+++.+|.++|||||+|.+.+.|+|+++|
T Consensus 104 ~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G 183 (481)
T 2o5r_A 104 HAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKG 183 (481)
T ss_dssp HHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTE
T ss_pred HHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccc
Confidence 9999999999999999999999999988888888899999 99999999999999999999999999888999999999
Q ss_pred eeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcc
Q psy16872 238 DISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317 (605)
Q Consensus 238 ~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~K 317 (605)
.+.+++. ..+|+||+|+||+||||||||||||+|||||||||+||++|||+|+++|++|||++|.|+|+|++++.+|+|
T Consensus 184 ~~~~~~~-~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G~K 262 (481)
T 2o5r_A 184 EVVFKTG-AIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKK 262 (481)
T ss_dssp EEEECTT-SSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSSB
T ss_pred eeEeccc-cCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCCCc
Confidence 9999854 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccc
Q psy16872 318 LSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFF 397 (605)
Q Consensus 318 LSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (605)
||||+|+.+|++|+++||+|+||+||++.+||+. ..+.++++++++++
T Consensus 263 LSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~-----~~~~e~~~~~e~i~--------------------------- 310 (481)
T 2o5r_A 263 LSKRHGATSVEAFRDMGYLPEALVNYLALLGWSH-----PEGKELLTLEELIS--------------------------- 310 (481)
T ss_dssp CCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCC-----TTCCCCCCHHHHHH---------------------------
T ss_pred ccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----CcccccCCHHHHHH---------------------------
Confidence 9999999999999999999999999999999876 34568999999999
Q ss_pred ccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccc
Q psy16872 398 NEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFK 477 (605)
Q Consensus 398 ~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~ 477 (605)
.|++++++++|++||++||.|+|++||++++.+ ++++.+.+++.+.... ..+.+++.+++.++++|+.+
T Consensus 311 -~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~-------~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~ 379 (481)
T 2o5r_A 311 -SFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIE-------KLAELAKPFFEKAGIK---IIDEEYFKKVLEITKERVEV 379 (481)
T ss_dssp -HCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHTTTCSS
T ss_pred -hCChhhCCccCcccChHHhhhhCHHHHHhcCHH-------HHHHHHHHHHHHCCCC---cccHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999997533 4888888887754211 12568999999999999999
Q ss_pred hHhhhhhhhhccccCCCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 478 LQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 478 l~dl~~~~~~ff~~~p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
+.|+++. ..|||..|.... +... ...+|+++++.|++. +|+.+++++.++++++++|+|++++|||
T Consensus 380 l~e~~~~-~~~~f~~~~~~~-----~~~~-------~~~~L~~~~~~L~~~-~~~~e~i~~~i~~v~~~~g~k~k~lf~p 445 (481)
T 2o5r_A 380 LSEFPEE-SRFFFEDPAPVE-----IPEE-------MKEVFSQLKEELQNV-RWTMEEITPVFKKVLKQHGVKPKEFYMT 445 (481)
T ss_dssp GGGHHHH-SGGGTSCCCCCC-----CCGG-------GHHHHHHHHHHTTTS-CSSHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCcCC-----CchH-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998 677777653211 2111 223455555566645 6999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~al 591 (605)
||+||||+.+||+|+++|++|||++|++||++|+
T Consensus 446 lR~aLtG~~~GP~l~~~~~llGke~~l~RL~~al 479 (481)
T 2o5r_A 446 LRRVLTGREEGPELVNIIPLLGKEIFLRRIERSL 479 (481)
T ss_dssp HHHHHTSSSCCSCHHHHHHHSCHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999886
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-115 Score=974.36 Aligned_cols=457 Identities=31% Similarity=0.531 Sum_probs=403.8
Q ss_pred ceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 71 KLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 71 ~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
+++|| |+|||+|||||+|||||||++||++||+|||||||||++|+++++++.|+++|+||||+||++|++|||||||+
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp~~ 209 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYR 209 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCee
Confidence 44555 47779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+|+++|++++++|+++|+||+||||+++|++. ..|.|+++| +++++|++++||||+|.+.+
T Consensus 210 qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~---------~~~~~g~~~~iR~k~~~~~~ 272 (592)
T 3al0_C 210 QSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVLPGKT 272 (592)
T ss_dssp STTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCH---------HHHHTTCCEEEEECCCSSCC
T ss_pred eeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHH---------HHhhcCCCceEEEECCCCCc
Confidence 9999999999999999999999999999998643 357899872 35678999999999997788
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~pl 309 (605)
.|+|+|+|.+.+++ ...+|+||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+||
T Consensus 273 ~~~D~v~G~~~~~~-~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpl 351 (592)
T 3al0_C 273 SFEDLLKGYMEFDN-STLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351 (592)
T ss_dssp EECCTTTCSEECCS-SSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECC
T ss_pred eeeecccceeeecc-ccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeee
Confidence 99999999999985 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccc
Q psy16872 310 LLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFG 389 (605)
Q Consensus 310 il~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~ 389 (605)
|+|.+|+|||||+|+++|.+||++||+|+||+|||+++||+. .++ +++|++||++
T Consensus 352 i~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~-----~~~-e~~s~~e~i~------------------- 406 (592)
T 3al0_C 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRV-----EGD-EIFTIEEKLQ------------------- 406 (592)
T ss_dssp CBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCC-----CSC-SCCCTTTTGG-------------------
T ss_pred eeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCC-----ccc-ccCCHHHHHh-------------------
Confidence 999999999999999999999999999999999999999886 334 8999999999
Q ss_pred ccccccccccccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHH
Q psy16872 390 IFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLC 469 (605)
Q Consensus 390 ~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~ 469 (605)
.|++++++++|++||++||.|+|++||++++.+ +|++.+.+++.+.... ....+.+++.+++.
T Consensus 407 ---------~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~-------~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 469 (592)
T 3al0_C 407 ---------SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLE-------DLKREFIEWAKYAGKE-IPSVDERYFSETLR 469 (592)
T ss_dssp ---------GCCTTSBCSSCCBCCHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHHHTCC-CCCCCTTTHHHHHH
T ss_pred ---------hCChhhcCcccceeCHHHHhhhhHHHhhcCCHH-------HHHHHHHHHHHHcCCC-cccccHHHHHHHHH
Confidence 999999999999999999999999999987532 5888888888754210 11124578999999
Q ss_pred HhhccccchHhhhhhhhhccccCCC-cCccCCCCccchhhHHHHH-HHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHh
Q psy16872 470 WASERIFKLQDLVGKDFAFIWVKPS-IEHLSQHPVESYGKVMLNL-TLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQ 547 (605)
Q Consensus 470 l~~~ri~~l~dl~~~~~~ff~~~p~-~~~~~~~~~~~~~~~~~~~-~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~ 547 (605)
++++|+.++.|+++. ..|||..+. +.+... .+..... ...+|+++++.|+..++|+.++|++.++++++ +
T Consensus 470 ~~~~r~~~l~el~~~-~~~~f~~~~~~~~~~~------~k~l~~~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~-~ 541 (592)
T 3al0_C 470 ICREKVNTLSQLYDI-MYPFMNDDYEYEKDYV------EKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSE-K 541 (592)
T ss_dssp HHHTTCSSSSHHHHT-TGGGTCSCCCCCTTHH------HHHTSSSSHHHHHHHHHHHHHSCSCCSSHHHHHHHHHHTT-T
T ss_pred HHhcccCcHHHHHHH-HHHHhCCCCCcCHHHH------HhhcCchhHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH-h
Confidence 999999999999998 677776543 221110 0111111 34556666666665667999999999999999 9
Q ss_pred CCChhh-HHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhh
Q psy16872 548 GVEYST-FMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVLEYSR 595 (605)
Q Consensus 548 giK~k~-lf~pLRiALTG~~~GP~L~eim~lLGkee~l~RL~~al~~l~ 595 (605)
|+|+++ +|||||+||||+.+||+|+++|++|||+++++||++|++.++
T Consensus 542 g~k~k~~lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~RL~~al~~~~ 590 (592)
T 3al0_C 542 GLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLK 590 (592)
T ss_dssp TSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999999999999998663
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-82 Score=657.01 Aligned_cols=273 Identities=31% Similarity=0.520 Sum_probs=236.9
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||++ ||+||||++.|++
T Consensus 16 G~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~--------~~~qSer~~~y~~ 87 (298)
T 1nzj_A 16 GELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD--------VLWQSQRHDAYRE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC--------CEEGGGCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCC--------CeeeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccccee
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDI 239 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i 239 (605)
++++|+++|+||+||||+++|++. |. .|+|.||+++.+ |.+++||||++.+...|+|+++|.+
T Consensus 88 ~~~~L~~~G~aY~c~ct~~~l~~~-------~~--~Y~g~cr~~~~~--------g~~~~~R~r~~~~~~~f~D~~~G~~ 150 (298)
T 1nzj_A 88 ALAWLHEQGLSYYCTCTRARIQSI-------GG--IYDGHCRVLHHG--------PDNAAVRIRQQHPVTQFTDQLRGII 150 (298)
T ss_dssp HHHHHHHTTCEEEECCCHHHHHHT-------TS--SCCCTTTTTCCC--------STTCEEEECCSSCCCEEEETTTEEE
T ss_pred HHHHHHHcCCcccCcCCHHHHHHc-------CC--CCCCccccCCcC--------CCCCcEEEecCCcccceehhhCccc
Confidence 999999999999999999998532 32 799999998764 6778999999987889999999999
Q ss_pred eecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCcccc
Q psy16872 240 SYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLS 319 (605)
Q Consensus 240 ~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLS 319 (605)
.++.+...+||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|.|+|+|+|+|.+|+|||
T Consensus 151 ~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLS 230 (298)
T 1nzj_A 151 HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 230 (298)
T ss_dssp ECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC-------
T ss_pred ccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCccc
Confidence 88754457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccc
Q psy16872 320 KRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNE 399 (605)
Q Consensus 320 KR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (605)
||+|+.+|++++.+ .++.||++++||+. ....+++|++|++++.++ .
T Consensus 231 KR~g~~~v~~~~~~----~~~~~~l~~lG~~~-----~~~~~~~~~~~~l~~~~~------------------------~ 277 (298)
T 1nzj_A 231 KQNHAPALPKGDPR----PVLIAALQFLGQQA-----EAHWQDFSVEQILQSAVK------------------------N 277 (298)
T ss_dssp ------CCCSSCCH----HHHHHHHHHTTCCC-----CSCGGGSCHHHHHHHHHH------------------------T
T ss_pred ccCCccChhcCCcc----HHHHHHHHHcCCCC-----CcccccCCHHHHHHHHHH------------------------h
Confidence 99999999988665 46999999999876 456789998864432222 9
Q ss_pred ccccccccCCC
Q psy16872 400 FDLQLVNENSC 410 (605)
Q Consensus 400 F~~~~i~~~~a 410 (605)
|++++|+++|.
T Consensus 278 f~~~~~~~~~~ 288 (298)
T 1nzj_A 278 WRLTAVPESAI 288 (298)
T ss_dssp CCGGGSCCCSB
T ss_pred CCHhhCCCCCC
Confidence 99999999994
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-78 Score=664.67 Aligned_cols=317 Identities=20% Similarity=0.263 Sum_probs=271.6
Q ss_pred hhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHH
Q psy16872 51 IYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLK 129 (605)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~ 129 (605)
|.++|++++.++++. .+++|| |+|||+||||||||||+||++||++||+|||||||||++|++++|+++|+++|+
T Consensus 11 i~~~i~~dl~~~~~~----~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~ 86 (553)
T 1qtq_A 11 IRQIIDEDLASGKHT----TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86 (553)
T ss_dssp HHHHHHHHHHHTSCS----SCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCcC----ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHH
Confidence 668889999999886 577888 599999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 130 WIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 130 wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
||||+||++ ||+||+|++.|+++|++||++|+||+||||+++|++.|..+ ..++|+++||+++.+|..
T Consensus 87 wLGl~wde~--------~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~----~~~g~~~~~R~~s~ee~~ 154 (553)
T 1qtq_A 87 WLGFHWSGN--------VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTL----TQPGKNSPYRDRSVEENL 154 (553)
T ss_dssp HTTCCCSSS--------CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCS----SSCCCCCTTTTCCHHHHH
T ss_pred HcCCCCCCC--------CeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhccc----ccCCCCCccccCchhhhH
Confidence 999999986 69999999999999999999999999999999998776332 246888999999998865
Q ss_pred ---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcC
Q psy16872 210 ---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRG 280 (605)
Q Consensus 210 ---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG 280 (605)
++|.+|. ++|||+|++. ....+.|.|.+++....+...+|.+ .|+||||||||||||+|||||||||
T Consensus 155 ~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w----~g~PtY~la~vvDDh~~GITHviRg 230 (553)
T 1qtq_A 155 ALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW----CIYPMYDFTHCISDALEGITHSLCT 230 (553)
T ss_dssp HHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC----SEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC----ccccccccccEEEeccCCcceEeec
Confidence 5788886 7899999874 3456667777766555444445533 4799999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHH
Q psy16872 281 VEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINF 343 (605)
Q Consensus 281 ~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nf 343 (605)
+||++|||+|.+||+||||+ .|.+.|+.. +|.+|+|||||+| .+||.+||++||+|+||+||
T Consensus 231 ~e~~~n~~~q~~l~~alg~~~~P~~~~f~h-Ln~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnf 309 (553)
T 1qtq_A 231 LEFQDNRRLYDWVLDNITIPVHPRQYEFSR-LNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309 (553)
T ss_dssp GGGTTTHHHHHHHHHTSCCSCCCEEEEECC-CCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHcCCCCCCCeEEEEe-ecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHH
Confidence 99999999999999999998 683333332 5889999999996 46899999999999999999
Q ss_pred HHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccccccccc-ccCCCCCCchhhhhhh
Q psy16872 344 VTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLV-NENSCKVDLTNLNEFN 421 (605)
Q Consensus 344 la~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i-~~~~a~fd~~KL~~~N 421 (605)
|+++||+.. ....++++++++++ |+++++ ++++|+||+.||.|+|
T Consensus 310 l~~lG~s~~----~~~~e~~~le~~~~-----------------------------~~l~~~~~r~~av~d~~Kl~~~N 355 (553)
T 1qtq_A 310 CKRIGVTKQ----DNTIEMASLESCIR-----------------------------EDLNENAPRAMAVIDPVKLVIEN 355 (553)
T ss_dssp HHHHCCCSS----CCCBCHHHHHHHHH-----------------------------HHHHHHSCEECEESSEEEEEBTT
T ss_pred HHHcCCCCC----ccccchhhHHHHHH-----------------------------hCcccccccccceeccceEEEEc
Confidence 999999872 23358899999777 677774 4788888888888888
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-75 Score=666.93 Aligned_cols=316 Identities=22% Similarity=0.285 Sum_probs=272.0
Q ss_pred hhhhhhhhhhhhcCcccCCCCceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHH
Q psy16872 50 MIYNRCEKLWITEGLRSSIPLKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDL 128 (605)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L 128 (605)
-|.++|++++.++.+. .+++|| |+|||+||||||||||+||++||++||+|||||||||++|++++|+++|+++|
T Consensus 50 fi~~ii~~dl~~g~~~----~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL 125 (851)
T 2hz7_A 50 FITEIIERDLEAGKYP----RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125 (851)
T ss_dssp HHHHHHHHHHHTTSCS----SCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcC----ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHH
Confidence 4778889999998875 578888 59999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHH
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQI 208 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~ 208 (605)
+||||+||++ ||+||+|++.|+++|++||++|+||+||||+++|++.|..+ ..++|+++||+++.+|.
T Consensus 126 ~wLGl~wde~--------~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~ls~ee~ 193 (851)
T 2hz7_A 126 KWLGLDWGEH--------FYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDRSVEEN 193 (851)
T ss_dssp HHHTCCCTTC--------EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTCCHHHH
T ss_pred HHcCCCCCCC--------cccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccCCHHHH
Confidence 9999999985 69999999999999999999999999999999998776322 23678888999999876
Q ss_pred H---HHHhcCC----CceEEEEcCC--CccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEc
Q psy16872 209 D---EKLKENS----KYCIRFKLTN--HTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLR 279 (605)
Q Consensus 209 ~---~~~~~g~----~~~iR~k~~~--~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIR 279 (605)
. ++|.+|. ++|||+|++. ....+.|.|.+++....+...+|.+ .|+||||||||||||+||||||||
T Consensus 194 l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w----~g~PtYhfA~vVDD~~~GITHViR 269 (851)
T 2hz7_A 194 LDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW----HIYPAYDFEHPLQDAIEGVTHSMC 269 (851)
T ss_dssp HHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC----SEEECHHHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC----ccccccceeeEeeeccCCcceeec
Confidence 4 6788886 8999999874 3456778777777655444456644 589999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCC-C---cEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHH
Q psy16872 280 GVEWQISTTKHILIYKAFGWTP-P---KFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNA 339 (605)
Q Consensus 280 G~d~l~stpkqi~ly~alG~~~-P---~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeA 339 (605)
|+||++|||+|++||+||||+. | .|+|+ +.+|+|||||+| .+||.+||++||+|+|
T Consensus 270 G~D~~~n~~~q~~l~~alG~~~~P~~~~fahL----n~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeA 345 (851)
T 2hz7_A 270 SLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRR----GLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEA 345 (851)
T ss_dssp EGGGTTTHHHHHHHHHHTTCSSCCEEEEECCE----EETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHH
T ss_pred chhhhhChHHHHHHHHHcCCCCCCCceEEEEe----cCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHH
Confidence 9999999999999999999986 8 47774 558999999995 3689999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccccccccccccccccccccc-ccCCCCCCchhhh
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLV-NENSCKVDLTNLN 418 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i-~~~~a~fd~~KL~ 418 (605)
|+|||+++||+.. ....++++++.+++ |+++++ ++++++||+.||.
T Consensus 346 Ir~fl~~lG~s~~----~~~~e~~~le~~~r-----------------------------~~l~~~~~r~~av~d~~Kl~ 392 (851)
T 2hz7_A 346 VRAFAAQIGVSRT----NRTVDIAVYENAVR-----------------------------DDLNHRAPRVMAVLDPVKVT 392 (851)
T ss_dssp HHHHHHHSCCCSS----CEEECHHHHHHHHH-----------------------------HHHHTTCCEECEESSEEEEE
T ss_pred HHHHHHhcCCCCC----cccccHHHHHHHHH-----------------------------hcccccccccceEecceeEE
Confidence 9999999998862 22246777775555 777774 6888888888888
Q ss_pred hhhH
Q psy16872 419 EFNR 422 (605)
Q Consensus 419 ~~N~ 422 (605)
|+|-
T Consensus 393 ~~N~ 396 (851)
T 2hz7_A 393 LTNL 396 (851)
T ss_dssp ETTC
T ss_pred EecC
Confidence 8884
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-74 Score=633.02 Aligned_cols=305 Identities=26% Similarity=0.424 Sum_probs=240.4
Q ss_pred CceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.+++|| |||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+. |
T Consensus 96 ~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~---------~ 166 (553)
T 3aii_A 96 EVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDET---------V 166 (553)
T ss_dssp CCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEE---------E
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCC---------c
Confidence 456777 488899999999999999999999999999999999999999999999999999999999963 7
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH---HHHhcCCC--ceEEEE
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID---EKLKENSK--YCIRFK 223 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~---~~~~~g~~--~~iR~k 223 (605)
+||+|++.|+++|++|+++|+||+||||++++++.|.. +++++||+++.+|.. +.|.+|.+ +|||+|
T Consensus 167 ~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k 238 (553)
T 3aii_A 167 IQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSLGFRENLQRWREMFEMKEGSAVVRVK 238 (553)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEEC
T ss_pred ccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccCCHHHHHHHHHHHhcCCcCceEEEEE
Confidence 99999999999999999999999999999999876632 367899999999764 36777854 899999
Q ss_pred cCCC--ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCC
Q psy16872 224 LTNH--TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTP 301 (605)
Q Consensus 224 ~~~~--~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~ 301 (605)
++.. +..+.|.|..++....+...||.+ -|+|||||||+||||+|||||||||+||++|||+|++||++|||+.
T Consensus 239 ~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~----~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~ 314 (553)
T 3aii_A 239 TDLNHPNPAIRDWVSMRIVEAEHPRTGTRY----RVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEP 314 (553)
T ss_dssp CCTTCSSGGGTTCEEEEECCSCBTTTBTSC----CEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCC
T ss_pred cccccCCCCCCCcEEEEecCCCCCccCCCc----eeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCC
Confidence 8643 223334433333221111122211 1699999999999999999999999999999999999999999999
Q ss_pred CcEEEecceecCCCccccccCC----------------CCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 302 PKFAHLPLLLNLNGSKLSKRQG----------------DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 302 P~f~H~plil~~dg~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
|.|.|+|+| +.+|+|||||+| ..||.+||++||+|+||+|||+++||+. .+..||+
T Consensus 315 P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~-------~~~~~s~ 386 (553)
T 3aii_A 315 PEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKI-------ADSTMSW 386 (553)
T ss_dssp CEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCS-------SCBCCCH
T ss_pred CeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCC-------ccccccH
Confidence 999999985 789999999987 4689999999999999999999999765 3467777
Q ss_pred HHHHH---Hhccc------cccccccccccccccccccccccccccccc
Q psy16872 366 KDLVE---KVCNN------ATYNRIKPTIKEFGIFWFQTFFNEFDLQLV 405 (605)
Q Consensus 366 eeli~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i 405 (605)
+.|.. ++|+. ||.+||||+|+|+|. .+++...+++++-
T Consensus 387 ~~L~~~~r~~l~~~a~R~~~V~~p~kv~i~n~~~--~~~~~~p~hp~~~ 433 (553)
T 3aii_A 387 KKIYGLNRSILEEEARRYFFAADPVKLEVVGLPG--PVRVERPLHPDHP 433 (553)
T ss_dssp HHHHHHHHHHHTTTCEEECEEESEEEEEEETCCS--CEEEEEESCTTCG
T ss_pred HHHHHHHHHHhhccChhhhhccCcEEEEEeCCCC--ceEEEecCCCCCC
Confidence 76644 45554 799999999999982 1444445555443
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-61 Score=537.30 Aligned_cols=425 Identities=16% Similarity=0.212 Sum_probs=304.6
Q ss_pred ecCCCCcCChhhHHHHHHHHHHH-----HHcCCeEEEeccCCCCCCCc------------------------------HH
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFA-----KSHNGSFILRIEDTDQTRFV------------------------------PE 119 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~A-----r~~~G~fiLRiEDTD~~R~~------------------------------~~ 119 (605)
.|+|||++||||+||||+||++| +.++|+|++||||||+.|.+ +.
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~~~~~~ 106 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEH 106 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSSSHHHH
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHHHHHHH
Confidence 58999999999999999997775 56889999999999976655 34
Q ss_pred HHHHHHHHHHHcCCCCCCCccCCCccCcccccc-cHH-HHHHHHHHHHHCC-CEeeeCCCHHHHHHHHH----HHHhCCC
Q psy16872 120 AVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK-RLA-LYQKEVQTLLHNG-SAYKCFCSDSRLNLIRK----DAVKSGL 192 (605)
Q Consensus 120 ~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe-r~~-~Y~~~a~~Li~~G-~AY~Cfcs~e~l~~~r~----~~~~~~~ 192 (605)
+++.|.++|+||||+||. |+||+ |.+ .|++++++|+++| .+|.|++. .|. .+-..+-
T Consensus 107 ~~~~~~~~l~~Lgi~~D~----------~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~------~~g~~~~~~y~~~~ 170 (523)
T 1irx_A 107 FMRKFEEEVEKLGIEVDL----------LYASELYKRGEYSEEIRLAFEKRDKIMEILNK------YREIAKQPPLPENW 170 (523)
T ss_dssp HHHHHHHHHHTTTCCCEE----------EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHH------HHHHTTCCCCCTTC
T ss_pred HHHHHHHHHHHcCCCceE----------EechhhccchHHHHHHHHHHHchHHHHHHHHh------hccccccccccCCc
Confidence 999999999999999986 69999 999 9999999999999 88877632 121 0101111
Q ss_pred CC--CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhh
Q psy16872 193 VP--KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDH 270 (605)
Q Consensus 193 ~~--~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~ 270 (605)
.+ .|+..|+.++.+ + ...+. .++||++..+.+.|.|++.|+....++- |. |+|+|+|+++||
T Consensus 171 ~~~~~~~~~~~~~~~~-~---~~~~~-~~~~f~~~~g~~~~~d~~~G~g~~~w~~---d~------~~~~~~l~~~vd-- 234 (523)
T 1irx_A 171 WPAMVYCPEHRREAEI-I---EWDGG-WKVKYKCPEGHEGWVDIRSGNVKLRWRV---DW------PMRWSHFGVDFE-- 234 (523)
T ss_dssp CSEEEECTTTCCEECE-E---EECSS-SCEEECCSSSCCCEECTTSSCEEECHHH---HH------HHHHHHSCCCBC--
T ss_pred eeccccchhhCCcccc-c---ccCCC-CceeeeecCCCccccCCcCCCCCCCCCc---ch------HhhHHHcCCCCc--
Confidence 12 466778776422 1 01122 5689999767788999996654433211 32 799999999997
Q ss_pred cCCcceEEcC--CCCcccHHHHHHHHHHcCCCCCcEEEecceecC-CCccccccCCCC-ChHHHHHcCCCHHHHHHHHHH
Q psy16872 271 HMNISHVLRG--VEWQISTTKHILIYKAFGWTPPKFAHLPLLLNL-NGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 271 ~m~ITHVIRG--~d~l~stpkqi~ly~alG~~~P~f~H~plil~~-dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~ 346 (605)
.||++|+.+| .||. .++++ +||||++|.|+|+|+|++. +|+|||||+|++ ++.++++. |.|+|++||+++
T Consensus 235 ~~G~Dh~~~h~s~~~~----~~i~~-~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTG----KEIIK-EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHH----HHHHH-HHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhH----HHHHH-HHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHHHHh
Confidence 8899988876 4443 23332 7999999999999999988 799999999985 99999999 999999999998
Q ss_pred hcCCCCCCCCCCccccCCHH-HHHHHhcccccccccccccccccccccccccccc-cccccccCCCCCCch--hhhhhhH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMK-DLVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEF-DLQLVNENSCKVDLT--NLNEFNR 422 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~e-eli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F-~~~~i~~~~a~fd~~--KL~~~N~ 422 (605)
.|| +.+..||.+ +|.+ .+ .+++++++.+.+|.+ ||.|+|+
T Consensus 309 ~~~--------~~~~~fs~~~~l~~----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~n~ 352 (523)
T 1irx_A 309 HRP--------NKEIKIDLGLGILN----------------------------LYDEFEKVERIYFGVEGGKGDDEELRR 352 (523)
T ss_dssp SCT--------TSCEEECCSTTHHH----------------------------HHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred cCC--------CCCceeCcchhHHH----------------------------HHHHHHHHHHHHhcccccchhhhhhcc
Confidence 764 235667766 5555 33 346777766666665 6999999
Q ss_pred HH-HHhh-ccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHH--------hhccccchHhhhhhhhhccccC
Q psy16872 423 AE-IRRV-MSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCW--------ASERIFKLQDLVGKDFAFIWVK 492 (605)
Q Consensus 423 ~~-i~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l--------~~~ri~~l~dl~~~~~~ff~~~ 492 (605)
+| |+++ +.++.. ..++... +..... ....+.+++.+++.. .++|+.+|.|+++. ..|||..
T Consensus 353 ~~~i~~~~~~~~~~----~~~p~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~~~~ 423 (523)
T 1irx_A 353 TYELSMPKKPERLV----AQAPFRF--LAVLVQ--LPHLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINL-ARNWVKK 423 (523)
T ss_dssp HHHHHCSSCCCCCC----CCCCHHH--HHHHTT--CTTCCHHHHHHHHHHTTSSCSSCCHHHHHHHHHHHHH-HHHHHHH
T ss_pred eeEeeccCCCCCCC----CCCCHHH--HHHHHh--hcCCCHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH-HHHHHHH
Confidence 99 9985 332200 1111110 111110 011346789999999 99999999999998 5566644
Q ss_pred CC-----c--Ccc-CCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhC
Q psy16872 493 PS-----I--EHL-SQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSG 564 (605)
Q Consensus 493 p~-----~--~~~-~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG 564 (605)
+. + .+. ..+.+. .....+|+++++.|++.++|+.++|++.++++++++|+|++++|||||+||||
T Consensus 424 ~~~~~~~~~~~~~~~~~~l~-------~~~~~~L~~~~~~L~~~~~~~~e~i~~~i~~~~~~~g~k~~~lf~plR~altG 496 (523)
T 1irx_A 424 YAPEDVKFSILEKPPEVEVS-------EDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFSTLYRLFIG 496 (523)
T ss_dssp TSCGGGCCCCCSSCCCCCCC-------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTCBHHHHHHHHHHHHHS
T ss_pred hCchhheecccccccccCCC-------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 32 1 111 111121 13445666666677666569999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 565 LKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 565 ~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
+.+||+|+++|++|||+++++||++
T Consensus 497 ~~~gP~l~~~l~lLGke~~l~Rl~~ 521 (523)
T 1irx_A 497 KERGPRLASFLASLDRSFVIKRLRL 521 (523)
T ss_dssp SSSCSCHHHHHHTSCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHhCHHHHHHHHHh
Confidence 9999999999999999999999975
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-24 Score=231.75 Aligned_cols=241 Identities=19% Similarity=0.290 Sum_probs=175.6
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC---CC----------cHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT---RF----------VPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~---R~----------~~~~~~~I~~~L 128 (605)
.+|+.| |+|+|++||||+|+++..+.+||- ++..|+.+|+|+|.+ |. .+.+.+.+.+++
T Consensus 21 ~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 21 GEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp TEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 567777 577799999999999999999995 456999999999974 22 568899999999
Q ss_pred HHcCCCC-CCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeee------CCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 129 KWIGVVP-DESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKC------FCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 129 ~wlGl~~-De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
+||||.+ |.. .++|++.+.+++++++|+++|+||.+ ||.++ .+.|...|.
T Consensus 101 ~~LgI~~~d~~---------~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~--------------~~~yg~lsg 157 (461)
T 1li5_A 101 DALNILRPDME---------PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT--------------DPTYGVLSR 157 (461)
T ss_dssp HHTTCCCCSBC---------CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG--------------CTTTTTTTT
T ss_pred HHcCCCCCccc---------ccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc--------------ccccccccC
Confidence 9999998 543 37899999999999999999999986 88753 134544453
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec--C-----------Ccccchhhhhh-
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS--D-----------GFPTYHFANVV- 267 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks--D-----------G~PtY~fA~vV- 267 (605)
. +.++ +.+|. |+.+.. .+..+.||++||+ + |.|.||.+|++
T Consensus 158 ~-~~~~----l~~g~----rv~~~~----------------~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam 212 (461)
T 1li5_A 158 Q-DLDQ----LQAGA----RVDVVD----------------DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAM 212 (461)
T ss_dssp C-----------------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHH
T ss_pred C-CHHH----hhcCC----cccchh----------------cccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHH
Confidence 2 2222 22332 111110 0223457787775 2 55778888875
Q ss_pred hhhcCCcceEEc--CCC----CcccHHHHHHHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 268 DDHHMNISHVLR--GVE----WQISTTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 268 DD~~m~ITHVIR--G~d----~l~stpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
.....|.++.|. |.| |+.+.+.|... ++|++.|. +.|.+++. .+|+|||||.|+ +++.++.+. |.|++
T Consensus 213 ~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~-~g~da 288 (461)
T 1li5_A 213 NCKQLGNHFDIHGGGSDLMFPHHENEIAQSTC--AHDGQYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKY-YDAET 288 (461)
T ss_dssp HHHHHCSSEEEEECBGGGTTTHHHHHHHHHHH--HSSSCCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTT-SCHHH
T ss_pred HHHHhCCCceEEeccCccCchHHHHHHHHHHH--hcCCCCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhh-CCHHH
Confidence 344456787787 999 55566666533 36887664 78888854 489999999998 799999998 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|++. + ++ ..+..||.+.|.+
T Consensus 289 lR~~ll~-~-~~------~~~~~fs~~~l~~ 311 (461)
T 1li5_A 289 VRYFLMS-G-HY------RSQLNYSEENLKQ 311 (461)
T ss_dssp HHHHHHS-S-CT------TSCEEECHHHHHH
T ss_pred HHHHHHc-C-Cc------CCCCCCCHHHHHH
Confidence 9999986 3 33 5677899998887
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=222.30 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=174.3
Q ss_pred ecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCC
Q psy16872 75 FLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPD 136 (605)
Q Consensus 75 fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~D 136 (605)
.|+|||.|||||+|++++.+.+||.+ .|..++++.+|| +.....++++.+.++++|||++||
T Consensus 13 ~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d 92 (497)
T 2csx_A 13 IYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEYT 92 (497)
T ss_dssp EEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 36899999999999999999999954 999999999999 566778999999999999999999
Q ss_pred CCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH
Q psy16872 137 ESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID 209 (605)
Q Consensus 137 e~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~ 209 (605)
. +|++|+ +.+.++++.++|.++|++|.| +|...+... ...+.. ..+.|.. +...++
T Consensus 93 ~---------~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~-~~~~~~------~~~~c~~-~~~~~~ 155 (497)
T 2csx_A 93 K---------FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFK-SEAELA------EDHTCPI-HQKKCE 155 (497)
T ss_dssp E---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------------
T ss_pred C---------CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEc-cHHHhc------cCCCCCC-CCCCCe
Confidence 6 367887 999999999999999999998 787654321 111000 0134421 111111
Q ss_pred HHHhcCCCceEEEEcCCCccceecc-------c-----ccee-eecCCCCCCCcEEEe--cC---Cc--c---cch----
Q psy16872 210 EKLKENSKYCIRFKLTNHTESWQDL-------V-----YGDI-SYNVFHNEGDPVIIK--SD---GF--P---TYH---- 262 (605)
Q Consensus 210 ~~~~~g~~~~iR~k~~~~~~~~~D~-------v-----~G~i-~~~~~~~~~D~Vi~k--sD---G~--P---tY~---- 262 (605)
. -....+.||++.-.....+. + ...+ .+- .....|..|.| ++ |. | .++
T Consensus 156 ~----~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l-~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW 230 (497)
T 2csx_A 156 Y----IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFV-KQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVW 230 (497)
T ss_dssp ------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHH-HHCCCCEECEEETTTCCSSEEETTEEEEEECSH
T ss_pred E----EecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHH-hcCCccccccccCCCCCCceecCCCCCceEEEe
Confidence 1 12346777765310000000 0 0000 000 11246888888 54 54 3 344
Q ss_pred ------hhhhhhh---hcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCCc-EEEecceecCCCccccccCCC-CChH
Q psy16872 263 ------FANVVDD---HHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVE 328 (605)
Q Consensus 263 ------fA~vVDD---~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~ 328 (605)
+++++.| ....+++.+.|.|++. +++. ....++|+++|. +.|+++++. +|+|||||.|+ +++.
T Consensus 231 ~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~ 307 (497)
T 2csx_A 231 FDALFNYISALEDKVEIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPY 307 (497)
T ss_dssp HHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEES-SSSBCCTTTTCCCCHH
T ss_pred cccchhhcccCCCcchhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCCCcEEEECcEEEe-CCceeCCcCCCCCCHH
Confidence 2555544 2337788889999986 3332 234578998885 888898666 99999999998 6899
Q ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 329 AIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 329 ~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++.+. |.|+|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 308 dli~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~l~~ 341 (497)
T 2csx_A 308 EVVQE-YGLDEVRYFLLREV-PF------GQDGDFSKKAILN 341 (497)
T ss_dssp HHHHH-HCHHHHHHHHHHSS-CT------TSCEECCHHHHHH
T ss_pred HHHHH-CCcHHHHHHHHhcC-Cc------ccCCCCChHHHHH
Confidence 99986 99999999999865 22 5677899999877
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=216.73 Aligned_cols=243 Identities=20% Similarity=0.258 Sum_probs=171.9
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|+|++||||+|+++....++|- ++..|+..++|+|.+ ..+..+++.+.++
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3678888 699999999999999998888774 456999999999974 2356889999999
Q ss_pred HHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee------eCCCHHHHHHHHHHHHhCCCCCCCCCcCc
Q psy16872 128 LKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK------CFCSDSRLNLIRKDAVKSGLVPKYDNKCR 201 (605)
Q Consensus 128 L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr 201 (605)
+++||+.+|... | +.|++.+...+++++|+++|+||. +||.+. .+.|...++
T Consensus 103 ~~~LgI~~d~~~-------p-raTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~--------------~~~yg~Ls~ 160 (462)
T 3tqo_A 103 EKALRVLSPDQE-------P-RATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR--------------FKDYGKLSH 160 (462)
T ss_dssp HHHHTCCCCSBC-------C-BGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT--------------CTTTTTTTT
T ss_pred HHHcCCCCCccc-------c-ChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc--------------ccccccccC
Confidence 999999997641 2 678999999999999999999994 678742 244543332
Q ss_pred CCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec-------------CCcccchhhhhhh
Q psy16872 202 NLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS-------------DGFPTYHFANVVD 268 (605)
Q Consensus 202 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks-------------DG~PtY~fA~vVD 268 (605)
.+.++ +..|. |..+.. .+..+.||+|||. .|.|.||+.|++.
T Consensus 161 -~~~~~----~~~g~----r~~~~~----------------~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam 215 (462)
T 3tqo_A 161 -RHLDE----LQAGA----RVEVSD----------------SKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAM 215 (462)
T ss_dssp -CSCC------------------------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHH
T ss_pred -CChHH----hhccC----cccccc----------------ccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHH
Confidence 12221 22232 222111 1344679999984 6889999999874
Q ss_pred h--hc-CCcceEEcCCCCcccHHHHH---HHHH-HcCCCCCc-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHH
Q psy16872 269 D--HH-MNISHVLRGVEWQISTTKHI---LIYK-AFGWTPPK-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNA 339 (605)
Q Consensus 269 D--~~-m~ITHVIRG~d~l~stpkqi---~ly~-alG~~~P~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeA 339 (605)
. ++ ..|+-..-|.|++. |.|. +..+ +.|.+.+. |.|..+ ++.+|+|||||.|+ +++.++.+. |.|++
T Consensus 216 ~~~~lG~~~dih~gG~Dl~F--pHheneiaqs~a~~g~p~~~~w~H~g~-v~~~G~KMSKSlGN~i~~~dll~~-~g~da 291 (462)
T 3tqo_A 216 SSSILGQPFDIHGGGLDLKF--PHHENEIAQSEAGEEKPFVKLWMHAGL-LEINKEKMSKSLGNIISIREALKE-SDVEV 291 (462)
T ss_dssp HHHHHCSSEEEEEEEGGGTT--THHHHHHHHHHHHHSSCCEEEEEEECC-EEETTEECCTTTTCCCBHHHHHHH-SCHHH
T ss_pred HHHhcCCCeEEEcccccccc--HHHHhHHHHHHHHcCCCcceEEEEccE-EecCCcCccccCCCcccHHHHHhh-cChHH
Confidence 3 22 23444446777664 4442 2223 34764455 466555 77899999999998 799999987 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 340 LINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 340 l~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+|.|++... + ..+..||.+.|.+
T Consensus 292 lR~~lls~~--y------r~~l~fs~~~l~~ 314 (462)
T 3tqo_A 292 LRYFLLSGH--Y------RNPLSYSKENLEN 314 (462)
T ss_dssp HHHHHHHSC--T------TSCEEECHHHHHH
T ss_pred hhhhhccCC--C------CCCcCcCHHHHHH
Confidence 999998643 4 4567789888776
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=215.04 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=175.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|++++.+.+||. ..|..++++.+|| +......+.+.+.++|++||+.||.
T Consensus 12 py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~ 91 (500)
T 2d5b_A 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD 91 (500)
T ss_dssp EETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCCC
Confidence 588999999999999999999995 5899999999999 5556778999999999999999996
Q ss_pred CccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH
Q psy16872 138 SETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE 210 (605)
Q Consensus 138 ~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~ 210 (605)
. |++|+ +.+..+++.++|.++|.+|.+ +|...+-- ...+. .-+|.|..
T Consensus 92 ~---------~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~------~~~~~--l~~g~c~~-------- 146 (500)
T 2d5b_A 92 F---------IRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERF------YTEKE--LVEGLCPI-------- 146 (500)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE------CCTTT--SBTTBCTT--------
T ss_pred C---------cccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcc------cCchh--ccCCcCCC--------
Confidence 3 56777 889999999999999999987 34332100 00000 01234521
Q ss_pred HHhcCCCc------eEEEEcCCCccceecccc-------ceeeec---------CCCCCCCcEEEe--cC---Cc--c--
Q psy16872 211 KLKENSKY------CIRFKLTNHTESWQDLVY-------GDISYN---------VFHNEGDPVIIK--SD---GF--P-- 259 (605)
Q Consensus 211 ~~~~g~~~------~iR~k~~~~~~~~~D~v~-------G~i~~~---------~~~~~~D~Vi~k--sD---G~--P-- 259 (605)
.|.+. .+-||++. +.|.+. ..+... ......|..|.| ++ |. |
T Consensus 147 ---~~~~v~~~~~~~wf~~l~~----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~ 219 (500)
T 2d5b_A 147 ---HGRPVERRKEGNYFFRMEK----YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219 (500)
T ss_dssp ---TCSBCEEEEEEEEEECGGG----GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE
T ss_pred ---CCCeeeEEecCceEEEcHH----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC
Confidence 12222 23344431 111100 000000 012346888888 44 54 4
Q ss_pred -------------------cchhhhhhhhhcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCCc-EEEecceecCCCc
Q psy16872 260 -------------------TYHFANVVDDHHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPPK-FAHLPLLLNLNGS 316 (605)
Q Consensus 260 -------------------tY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P~-f~H~plil~~dg~ 316 (605)
.|+..+..+++. +.+..+.|.||+. +++. .+..++|+++|. +.|+++++..+|+
T Consensus 220 ~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~ 296 (500)
T 2d5b_A 220 ENHVTFVWFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGR 296 (500)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSS
T ss_pred CCCeeEEccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCC
Confidence 255444344443 5577778999986 5553 345678998886 7888998888999
Q ss_pred cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|||||.|+ +++.++.+. |.|+|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 297 KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~~~~ 343 (500)
T 2d5b_A 297 KMSKTLGNVVDPFALLEK-YGRDALRYYLLREI-PY------GQDTPVSEEALRT 343 (500)
T ss_dssp CCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEECCHHHHHH
T ss_pred cccccCCCCCCHHHHHHh-cCcHHHHHHHHhcC-Cc------ccCCCCCHHHHHH
Confidence 99999998 689999986 99999999999865 23 4677899999887
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-22 Score=223.86 Aligned_cols=251 Identities=17% Similarity=0.133 Sum_probs=181.8
Q ss_pred eeEe--cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCCC--------------------------------
Q psy16872 72 LKHF--LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDTD-------------------------------- 112 (605)
Q Consensus 72 v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDTD-------------------------------- 112 (605)
+..| |+|+|++||||+|++++-..+||-. .| .++--|.|.+
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~ 185 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYV 185 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHH
Confidence 3444 6888999999999999988888753 34 4444455553
Q ss_pred --------------------------CCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccccc--HHHHHHHHHHH
Q psy16872 113 --------------------------QTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKR--LALYQKEVQTL 164 (605)
Q Consensus 113 --------------------------~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer--~~~Y~~~a~~L 164 (605)
..+.+..+.+.+.++++||||+||..+ +.|+. .+.+.+++++|
T Consensus 186 ~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~---------~es~~~~~~~v~~~~~~L 256 (592)
T 1iq0_A 186 RLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV---------WESDIVRAGLLQKALALL 256 (592)
T ss_dssp HHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEE---------EHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEec---------cCCcccccchHHHHHHHH
Confidence 023345567789999999999998742 45655 66889999999
Q ss_pred HHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCC
Q psy16872 165 LHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVF 244 (605)
Q Consensus 165 i~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~ 244 (605)
.++|++|+| + .| .|+|. .+ ++++. | |. .
T Consensus 257 ~~kG~~y~~--~-------------~g---~~~G~------------------~~--~~~~~----~-----g~-----~ 284 (592)
T 1iq0_A 257 EQSPHVFRP--R-------------EG---KYAGA------------------LV--MDASP----V-----IP-----G 284 (592)
T ss_dssp TTSTTEECC--S-------------SS---TTTTC------------------EE--EECTT----T-----SC-----S
T ss_pred HHCCCcccC--c-------------cc---CcCCC------------------EE--Eechh----c-----CC-----C
Confidence 999999987 1 11 23321 12 23321 1 10 1
Q ss_pred CCCCCcEEEecCCcccchh---hhhhh------hh-cC----------------------CcceE--EcCCCCcccHHHH
Q psy16872 245 HNEGDPVIIKSDGFPTYHF---ANVVD------DH-HM----------------------NISHV--LRGVEWQISTTKH 290 (605)
Q Consensus 245 ~~~~D~Vi~ksDG~PtY~f---A~vVD------D~-~m----------------------~ITHV--IRG~d~l~stpkq 290 (605)
...++.|+.|+||.|||.+ |.+++ |+ .. +.+|| |.|.||....+++
T Consensus 285 ~~l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~ 364 (592)
T 1iq0_A 285 LEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV 364 (592)
T ss_dssp CSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH
T ss_pred CCCCceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHH
Confidence 1235689999999999987 55665 22 21 78888 5999999999999
Q ss_pred HHHHHHcCCCCC--cEEEec--ceecCCCccccccCCCC-ChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCH
Q psy16872 291 ILIYKAFGWTPP--KFAHLP--LLLNLNGSKLSKRQGDM-SVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSM 365 (605)
Q Consensus 291 i~ly~alG~~~P--~f~H~p--lil~~dg~KLSKR~g~~-sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~ 365 (605)
..+++++||+.| .+.|++ ++. .+|+|||||.|++ ++.++.++|+ +++.+++...++++ ++.+ ..
T Consensus 365 ~~~~~alG~~~~~~~~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~------~~~e--~~ 433 (592)
T 1iq0_A 365 RAALALAGYPALAEKAHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDH------PDKE--EA 433 (592)
T ss_dssp HHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTC------SCHH--HH
T ss_pred HHHHHHcCCCCCCCcEEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCC------CcHH--HH
Confidence 999999999753 689985 454 5788999999985 8999999988 89999999998765 2222 34
Q ss_pred HH-----HHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhhH
Q psy16872 366 KD-----LVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFNR 422 (605)
Q Consensus 366 ee-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N~ 422 (605)
.+ .++ .|.+.+...++..||.+++.++|+
T Consensus 434 a~~vg~~aiR----------------------------yf~L~~~~~~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 434 ARMVALGAIR----------------------------FSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp HHHHHHHHHH----------------------------HHHHHSCTTSCEEECHHHHHCSSS
T ss_pred HHhhcHHHHH----------------------------HHHHhcCCCCCCeecHHHHHHHhc
Confidence 43 334 889999999999999999999986
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=206.08 Aligned_cols=245 Identities=17% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHH
Q psy16872 69 PLKLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQD 127 (605)
Q Consensus 69 ~~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~ 127 (605)
+.+|+.| |+|+|++||||+|+++....+||- ++..|+..++|.|.+ .....+.+.+.++
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4567777 688899999999999999999987 667999999999864 1246788999999
Q ss_pred HHHcCCC-CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCC----CCCCCC--cC
Q psy16872 128 LKWIGVV-PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGL----VPKYDN--KC 200 (605)
Q Consensus 128 L~wlGl~-~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~----~~~Y~~--~c 200 (605)
|++|||. +|..+ +.|++.+.+++++++|+++|.+|.+.|+. .|. ...|.. ..
T Consensus 117 ~~~Lgi~~~d~~~---------r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~------------e~~~~f~~~~~~~~g~l 175 (414)
T 3c8z_A 117 MAALRVLPPHDYV---------AATDAIAEVVEMVEKLLASGAAYIVEDAE------------YPDVYFRADATAQFGYE 175 (414)
T ss_dssp HHHTTCCCCSEEE---------EGGGCHHHHHHHHHHHHHHTSEEECSCSS------------CCCEEECTTSSTTTTTT
T ss_pred HHHcCCCCCccee---------cccchHHHHHHHHHHHHHCCCEEeccCCc------------CCCEEEEchhhhhhHhh
Confidence 9999998 88653 56789999999999999999999876541 011 112211 11
Q ss_pred cCCCHHHHHHHHhc--CCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEe-------------cCCcccchhhh
Q psy16872 201 RNLTQEQIDEKLKE--NSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIK-------------SDGFPTYHFAN 265 (605)
Q Consensus 201 r~ls~~e~~~~~~~--g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~k-------------sDG~PtY~fA~ 265 (605)
.+...+++...+.+ +... .. .+....|+++|| ..|+|.||..|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~------~~----------------~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec 233 (414)
T 3c8z_A 176 SGYDRDTMLTLFAERGGDPD------RP----------------GKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVEC 233 (414)
T ss_dssp TCCCHHHHHHHHHHTTCCTT------CT----------------TCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHH
T ss_pred cCCCHHHHHHHHhhcccccc------cc----------------ccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchh
Confidence 12344544433211 1110 00 011122333333 23678999877
Q ss_pred ----------hhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 266 ----------VVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 266 ----------vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
++|.|.+|++|+. -|+.+.+.|... +.|.++| .+.|..+ ++.+|+|||||.|+ +++.++.+
T Consensus 234 ~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~a~~~a--~~g~~~~~~~~~h~g~-v~~~G~KMSKS~GN~v~~~~ll~ 307 (414)
T 3c8z_A 234 SAIALTRIGTGLDIQGGGSDLIF---PHHEYSAAHAES--VTGERRFARHYVHTGM-IGWDGHKMSKSRGNLVLVSQLRA 307 (414)
T ss_dssp HHHHHHHTCSCEEEEEEEGGGTT---THHHHHHHHHHH--HHCCSCSEEEEEEECC-BC-------------CBHHHHHH
T ss_pred HHHHHHhcCCCceEEEecccccc---HHHHHHHHHHHH--hcCCCCcCeEEEEcCE-EecCCeEcccccCCcCCHHHHhh
Confidence 3555555555543 266666655332 2487554 4788777 45589999999997 79999999
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 333 SEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 333 ~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||.|+++|.|++. + ++ ..+..||.+.+.+
T Consensus 308 ~g~g~D~lR~~ll~-~-~~------~~d~~fs~~~l~~ 337 (414)
T 3c8z_A 308 QGVDPSAIRLGLFS-G-HY------REDRFWSNEVLDE 337 (414)
T ss_dssp TTCCHHHHHHHHHT-S-CT------TSCBCCCHHHHHH
T ss_pred ccCCcchheeEEEe-c-Cc------CCCCCcCHHHHHH
Confidence 99999999999987 4 33 4667899998887
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=202.03 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=143.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCCCCcHH--------HHHHHHHHHHHcCCCCCCCccCCCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQTRFVPE--------AVEKLEQDLKWIGVVPDESETVGGN 144 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~R~~~~--------~~~~I~~~L~wlGl~~De~p~~~g~ 144 (605)
.|||.|||||+++|+.+|.+++ .|++++++|.| |+..|...+ +.+.|...|.|+|++||..
T Consensus 47 ~PTG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~------ 119 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKL------ 119 (394)
T ss_dssp CCCSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTC------
T ss_pred CCCCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHc------
Confidence 5679999999999999999998 89999999999 875554432 4467788899999999985
Q ss_pred cCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEc
Q psy16872 145 YGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 145 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
.+|+||++.. +.++++.++ .|.|+||-.++.... . . .+|+
T Consensus 120 -~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~-------~-----------------------~--~~r~-- 159 (394)
T 2dlc_X 120 -KFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAG-------A-----------------------D--VVKQ-- 159 (394)
T ss_dssp -EEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHT-------T-----------------------T--TSCC--
T ss_pred -EEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhccc-------H-----------------------h--hhcc--
Confidence 3689999864 345555555 688999988764210 0 0 0010
Q ss_pred CCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcE
Q psy16872 225 TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKF 304 (605)
Q Consensus 225 ~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f 304 (605)
. +. -+-|..+|..--+.|...++++||++|+|+..++..++.+++.||+..|.+
T Consensus 160 -------------------~---~~----~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~ 213 (394)
T 2dlc_X 160 -------------------V---AN----PLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAH 213 (394)
T ss_dssp -------------------C---SS----CCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEE
T ss_pred -------------------c---CC----ccceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEE
Confidence 0 00 034567888888889999999999999999999999999999999999999
Q ss_pred EEecceecCC-CccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AHLPLLLNLN-GSKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H~plil~~d-g~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.|.|+|.+.+ |+|||||.++ +.+. =.|+.+...+...
T Consensus 214 l~~pll~gl~~G~KMSKS~~ns~I~L~------D~p~~i~kKI~ka 253 (394)
T 2dlc_X 214 LMNPMVPGLAQGGKMSASDPNSKIDLL------EEPKQVKKKINSA 253 (394)
T ss_dssp EEECCCCCCC----------CCSCBTT------CCHHHHHHHHHHS
T ss_pred EecccccCCCCCCcCCCCCCCCEEecc------CCHHHHHHHHHHh
Confidence 9999999999 9999999886 4443 2599999999874
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-19 Score=192.28 Aligned_cols=242 Identities=20% Similarity=0.309 Sum_probs=153.2
Q ss_pred ceeEe---cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCC----------CCC---C----------CcHH
Q psy16872 71 KLKHF---LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDT----------DQT---R----------FVPE 119 (605)
Q Consensus 71 ~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDT----------D~~---R----------~~~~ 119 (605)
+|++| |+|+|++||||+|+++.-.+++|- +...|+..|.|+ |.+ | ....
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 68888 588899999999999988777764 557899999998 443 1 2468
Q ss_pred HHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee-----eCCCHHHHHHHHHHHHhCCCCC
Q psy16872 120 AVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK-----CFCSDSRLNLIRKDAVKSGLVP 194 (605)
Q Consensus 120 ~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~e~l~~~r~~~~~~~~~~ 194 (605)
+++.+.++++.|||.+|... | ..+++.+..++++++|+++|+||. .||... .+
T Consensus 122 ~~~~f~~d~~~Lgi~~d~~~-------~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------------f~ 179 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPDKV-------L-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------------FK 179 (501)
T ss_dssp HHHHHHHHHHHTTCCCCSEE-------E-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--------------CT
T ss_pred HHHHHHHHHHHcCCCCCCcc-------c-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--------------cC
Confidence 89999999999999988632 3 579999999999999999999995 567643 23
Q ss_pred CCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEec----------------CCc
Q psy16872 195 KYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKS----------------DGF 258 (605)
Q Consensus 195 ~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ks----------------DG~ 258 (605)
.|-. |+...+.+.+..|. |..+.. .+..+.||++||. .|.
T Consensus 180 ~yG~----ls~~~~~~~~~~g~----r~~~~~----------------~K~~p~Df~lWk~~p~~~~~~~~W~spwG~Gr 235 (501)
T 3sp1_A 180 SYGE----MAGIDLIDKDMTLP----RVDVDK----------------FKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGY 235 (501)
T ss_dssp TTTT----TTC-------------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEE
T ss_pred Cccc----cCCCChhhhhccCC----ccCccc----------------ccCCchhhHhcCCCCCCCCCCceecCCCCCCC
Confidence 4532 22222101133332 111110 1233457777764 378
Q ss_pred ccchhhhhhh--hhcC-Ccc-eEEcCCCCcccHHHHH---HHHHHc-CCCCC-cEEEecceecCCCccccccCCC-CChH
Q psy16872 259 PTYHFANVVD--DHHM-NIS-HVLRGVEWQISTTKHI---LIYKAF-GWTPP-KFAHLPLLLNLNGSKLSKRQGD-MSVE 328 (605)
Q Consensus 259 PtY~fA~vVD--D~~m-~IT-HVIRG~d~l~stpkqi---~ly~al-G~~~P-~f~H~plil~~dg~KLSKR~g~-~sv~ 328 (605)
|.||..|.+. .++. .++ |+ =|.|++. |.|. +..+|+ |-+.+ .|.|..++ ..+|+||||+.|+ +++.
T Consensus 236 PGWhiEcsam~~~~lg~~~DIH~-gG~DLif--pHheneiAqs~a~~g~~~~~~w~H~g~v-~~~G~KMSKSlGN~it~~ 311 (501)
T 3sp1_A 236 PSWHLECAAMNLEYFKDALDIHL-GGVDHIG--VHHINEIAIAECFLNKKWCDVFVHGEFL-IMDYNKMSKSRGNFITVK 311 (501)
T ss_dssp ECHHHHHHHHHHHHTTTCCCEEE-EEGGGTT--THHHHHHHHHHHHHTSCCCSEEEEECCE-ECC----------CCCHH
T ss_pred CCchHHHHHHHHHHcCCCceEEe-ecccccc--chHHHHHHHHHHccCCCCCeEEEEeeeE-eeCCeEccccCCCcCCHH
Confidence 9999998652 3332 122 33 3677664 4443 223343 53333 47998884 5699999999998 7999
Q ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 329 AIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 329 ~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++.+.||.|+++|.|++.. ++ ..+..||.+.|.+
T Consensus 312 dll~~gyg~d~lR~~lls~--~y------r~~l~fs~~~l~~ 345 (501)
T 3sp1_A 312 DLEDQNFSPLDFRYLCLTS--HY------RNQLKFSLDNLQA 345 (501)
T ss_dssp HHHHTTCCHHHHHHHHHTS--CT------TSCEECCHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhc--cC------CCCCccCHHHHHH
Confidence 9999999999999999764 34 4667888887776
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=189.43 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=92.3
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcCCcceEE--cCCCCcccHHHHHHHHHHcCCCCCcEEEec--ce-ecCCCc--c
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHMNISHVL--RGVEWQISTTKHILIYKAFGWTPPKFAHLP--LL-LNLNGS--K 317 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P~f~H~p--li-l~~dg~--K 317 (605)
.|.||+||||.|||. +|.+++++.++++++| +|.||....+++..+++++||++|.+.|++ ++ ++.+|+ |
T Consensus 206 ~~~vl~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~K 285 (464)
T 3fnr_A 206 KDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYK 285 (464)
T ss_dssp SCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECC
T ss_pred CceEEEeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccC
Confidence 479999999999998 8899999999999995 999999999999999999999988887766 66 667885 9
Q ss_pred ccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 318 LSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 318 LSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||.|+ +++.++.++ +.++|++.|++.-. . .++-.|+++.+.+
T Consensus 286 MSKr~Gn~v~l~dll~~-~g~dalRy~~l~~~--~------~~d~~Fd~~~~~~ 330 (464)
T 3fnr_A 286 MSKRAGNFILMSDVVDE-IGSDALRYIFLSKK--C------DTHLEFDISDLQK 330 (464)
T ss_dssp C---CCSSCBHHHHHHH-HCHHHHHHHTTSSC--T------TSCEEEEGGGGGC
T ss_pred CcCcCCCCCCHHHHHhh-ccHHHHHHHHHhcC--C------CCCCccCHHHHHH
Confidence 9999997 599999988 88999999986432 2 3455566655544
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-18 Score=187.79 Aligned_cols=272 Identities=17% Similarity=0.199 Sum_probs=161.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAK--SHNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar--~~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|++++.+.+|| ...|.-++.+-.+| +....+.+.+.+.++|++|||+||.
T Consensus 27 py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~ 106 (560)
T 3h99_A 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDN 106 (560)
T ss_dssp CBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999 44565555444444 4456778899999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee-------eCCCHHHHHHHHHHHHhCCCCCCCC------C---c
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK-------CFCSDSRLNLIRKDAVKSGLVPKYD------N---K 199 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-------Cfcs~e~l~~~r~~~~~~~~~~~Y~------~---~ 199 (605)
. |+.+ ++.+..+++.++|.++|.+|. |-....-+.. ..-.|.-|.|. . .
T Consensus 107 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~----~~v~g~cp~c~~~~~~gd~ce~ 173 (560)
T 3h99_A 107 Y---------HSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPD----RFVKGTCPKCKSPDQYGDNCEV 173 (560)
T ss_dssp E---------EESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCG----GGEEEECTTTCCSSEETTBCTT
T ss_pred c---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecc----hhcCCCCCCCCCcccccchhhh
Confidence 3 2333 455666888999999999993 3211110100 00011122221 1 1
Q ss_pred Cc-CCCHHHHHHH--HhcCCCceE------EEEcCCCccc---------eeccccceeeecCCCCCCCcEEEecC---Cc
Q psy16872 200 CR-NLTQEQIDEK--LKENSKYCI------RFKLTNHTES---------WQDLVYGDISYNVFHNEGDPVIIKSD---GF 258 (605)
Q Consensus 200 cr-~ls~~e~~~~--~~~g~~~~i------R~k~~~~~~~---------~~D~v~G~i~~~~~~~~~D~Vi~ksD---G~ 258 (605)
|. .+.+.+..+. ...|.+.++ .|+++.-... +.+.++..+..-......|..|-|.. |.
T Consensus 174 cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~ 253 (560)
T 3h99_A 174 CGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGF 253 (560)
T ss_dssp TCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSC
T ss_pred ccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCe
Confidence 32 2333221100 012333333 3444321000 00000000000001135688888776 54
Q ss_pred cc----------ch-----hhhhh------------------hhhcCCcceEEcCCCCccc-HHHHHHHHHHcCCCCCc-
Q psy16872 259 PT----------YH-----FANVV------------------DDHHMNISHVLRGVEWQIS-TTKHILIYKAFGWTPPK- 303 (605)
Q Consensus 259 Pt----------Y~-----fA~vV------------------DD~~m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P~- 303 (605)
|. |- +..++ .|....+.||+ |.|++.. +-...+++.++|++.|.
T Consensus 254 ~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~ 332 (560)
T 3h99_A 254 EIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSN 332 (560)
T ss_dssp BCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSE
T ss_pred eCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcE
Confidence 31 11 11111 23445678988 9999841 11333566789998883
Q ss_pred -EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 304 -FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 304 -f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
++| .+++. +|+|||||.|+ +++.++.+. |.++|+|.|++..+. . ...+..|+.+.++.
T Consensus 333 v~~h-g~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~-~-----~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 333 LFVH-GYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLS-S-----RIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEEE-CCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCC-S-----SCCCEEECHHHHHH
T ss_pred EEEE-eEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCC-C-----CCCCCCcCHHHHHH
Confidence 444 55444 99999999998 799999998 999999999998761 1 11456899999876
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=171.61 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=139.6
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCC-------CCcHHHHHH-HHHHHHHcCCCCCCCccCCCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQT-------RFVPEAVEK-LEQDLKWIGVVPDESETVGGN 144 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~-------R~~~~~~~~-I~~~L~wlGl~~De~p~~~g~ 144 (605)
.|||.|||||+.+|+.+|.+.+ .|+++++.|.| |+.. |++..+.+. |...|.|+|++|+..
T Consensus 43 ~PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~------ 115 (372)
T 1n3l_A 43 ATTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKL------ 115 (372)
T ss_dssp CCSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTE------
T ss_pred CCCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhc------
Confidence 4889999999999999999997 79999999999 8632 234455555 555679999999875
Q ss_pred cCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEc
Q psy16872 145 YGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKL 224 (605)
Q Consensus 145 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~ 224 (605)
.+|+||+.. .+.+++..++. |.|+||..++.. |. . .+.|++
T Consensus 116 -~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~-----------------~~--------------~-~v~~~~- 156 (372)
T 1n3l_A 116 -KFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKK-----------------AG--------------A-EVVKQV- 156 (372)
T ss_dssp -EEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHH-----------------HT--------------T-TTSCCC-
T ss_pred -EEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHh-----------------ch--------------h-hhhccc-
Confidence 368999984 34566666665 779999876532 00 0 000100
Q ss_pred CCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcE
Q psy16872 225 TNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKF 304 (605)
Q Consensus 225 ~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f 304 (605)
++ -+=|..+|-.--+.|-...+.+||++|+|+..+...++.|++.+|+..|..
T Consensus 157 -----------------------~~----~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~ 209 (372)
T 1n3l_A 157 -----------------------EH----PLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVH 209 (372)
T ss_dssp -----------------------SS----CCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEE
T ss_pred -----------------------CC----CcceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEE
Confidence 01 012456666666777778899999999999999999999999999999999
Q ss_pred EEecceecCCCccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 305 AHLPLLLNLNGSKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 305 ~H~plil~~dg~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.|+|.+.+|+||||+.++ +.+. =.|+.+..++..
T Consensus 210 l~~pll~gldG~KMSKS~~ns~I~L~------d~p~~i~kKi~~ 247 (372)
T 1n3l_A 210 LMNPMVPGLTGSKMSSSEEESKIDLL------DRKEDVKKKLKK 247 (372)
T ss_dssp EEECCCCCSSCC-------CCSCBTT------CCHHHHHHHHHT
T ss_pred EecCccCCCCcccccCCCCCCeEecc------CCHHHHHHHHHH
Confidence 99999999999999999886 4443 249999999976
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=184.91 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=145.2
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||++||||+|++++.+.+||- ++..|+..++|.+. ......+.+.+.++|++|||.+|.
T Consensus 34 pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~ 113 (536)
T 4dlp_A 34 AYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDD 113 (536)
T ss_dssp BCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 589999999999999999999984 33567778888654 345678899999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCC-cCcCCCHHHHH
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDN-KCRNLTQEQID 209 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~-~cr~ls~~e~~ 209 (605)
. ++.+ ++.+..+++.++|.++|.+|.+ ||..++-.. ...+...|. +| .|.
T Consensus 114 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~----~g~~c~-------- 171 (536)
T 4dlp_A 114 Y---------IRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRA----DGVRYG-------- 171 (536)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECT----TSCEEC--------
T ss_pred c---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCC----CCCccc--------
Confidence 3 2334 4888999999999999999975 666432100 000000110 11 121
Q ss_pred HHHhcCCCceEE------EEcCCCccceecccc---ceeeec---------CCCCCCCcEEEecC---C----------c
Q psy16872 210 EKLKENSKYCIR------FKLTNHTESWQDLVY---GDISYN---------VFHNEGDPVIIKSD---G----------F 258 (605)
Q Consensus 210 ~~~~~g~~~~iR------~k~~~~~~~~~D~v~---G~i~~~---------~~~~~~D~Vi~ksD---G----------~ 258 (605)
.+|.+..+| |+++.-.....+.+. ..+... ......|..|-|++ | .
T Consensus 172 ---~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~ 248 (536)
T 4dlp_A 172 ---PQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVM 248 (536)
T ss_dssp ---TTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEE
T ss_pred ---CCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCce
Confidence 123333222 233210000000000 000000 01234577777652 1 1
Q ss_pred ccch------hhhh--------hhhhcCCcceEEcCCCCccc-HHHHHHHHHHcCCCCCc-EEEecceecCCCccccccC
Q psy16872 259 PTYH------FANV--------VDDHHMNISHVLRGVEWQIS-TTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSKRQ 322 (605)
Q Consensus 259 PtY~------fA~v--------VDD~~m~ITHVIRG~d~l~s-tpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSKR~ 322 (605)
.+|- ++.. .+.+.-.-.||+ |.|++.. +..+..+..++|+++|. ...+++++ .+|+|||||.
T Consensus 249 yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~-G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~-~~G~KMSKS~ 326 (536)
T 4dlp_A 249 YVWVDALTNYITALGYPDTTDERWAYWPANAHII-GKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLF-NRGEKMSKSV 326 (536)
T ss_dssp CHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEE-EGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEE-C---------
T ss_pred EEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEe-echHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEe-eCCceecccC
Confidence 1110 0000 000111124555 9998851 11233455678998774 33336655 5999999999
Q ss_pred CC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 323 GD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 323 g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+ ++..++.+. |.++|+|.|++..+ +. ..+..||.+.+++
T Consensus 327 GNvi~p~d~i~~-~GaDalR~~ll~~~-~~------~~d~~fs~~~~~~ 367 (536)
T 4dlp_A 327 GNVIDPFELVER-YGLDQLRYFLMREV-PF------GQDGSYSHEAIVN 367 (536)
T ss_dssp ---CCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEECCHHHHHH
T ss_pred CCCCCHHHHHHH-cCcHHHHHHHHhcC-CC------CCCCCCCHHHHHH
Confidence 97 688898887 89999999999864 23 4567899999887
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=164.78 Aligned_cols=192 Identities=16% Similarity=0.202 Sum_probs=151.3
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||+ .+|.+|...+..|+++++.|-| ++......++.+.+..++.++|++|+... .++
T Consensus 40 ~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~-------i~~ 111 (323)
T 2cyb_A 40 EPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK-------FVL 111 (323)
T ss_dssp CCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE-------EEE
T ss_pred CCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------EEE
Confidence 89999999998 7899999999999999998866 32334678888999999999999998753 379
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+.... .++++.+ ..|.|.||-.++... +.+- |.
T Consensus 112 qS~~~~~-~~~~~~~----~~l~~~~t~~~l~~~----------~~~~-----------------~~------------- 146 (323)
T 2cyb_A 112 GSEYQLS-RDYVLDV----LKMARITTLNRARRS----------MDEV-----------------SR------------- 146 (323)
T ss_dssp GGGTTTS-HHHHHHH----HHHHHHSBHHHHHHH----------TTTT-----------------CS-------------
T ss_pred cchhccc-hHHHHHH----HHHhCccCHHHHhcc----------chhh-----------------cc-------------
Confidence 9998632 1333322 236799998877421 0010 00
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPL 309 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~pl 309 (605)
. .++ -+.|..+|.+..+.|+...+++||++|.|+..++..+..|.+.+|...|...|.|+
T Consensus 147 --------------~--~~~----~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pl 206 (323)
T 2cyb_A 147 --------------R--KED----PMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPI 206 (323)
T ss_dssp --------------C--SSS----CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECC
T ss_pred --------------c--cCC----CCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCc
Confidence 0 011 04578899999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 310 LLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 310 il~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|.+.+|+||||+.|+ +.+.+ .|++++..+...
T Consensus 207 l~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 207 LVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp CBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred ccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 999999999999764 45542 599999999864
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=179.38 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccH-HHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCC
Q psy16872 117 VPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRL-ALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPK 195 (605)
Q Consensus 117 ~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~-~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~ 195 (605)
+..+.+.+.++++.|||.+|..+ ..|+.. +...++++.|.++|.+|..
T Consensus 270 ~~~~~~~~~~~~~~L~V~fD~~~---------~ES~~~~~~~~~vi~~L~~kG~~ye~---------------------- 318 (607)
T 1f7u_A 270 REFSIEKYIDTYARLNIKYDVYS---------GESQVSKESMLKAIDLFKEKGLTHED---------------------- 318 (607)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEE---------EGGGCCHHHHHHHHHHHHHTTCEEEE----------------------
T ss_pred HHHHHHHHHHHHHHcCCcceeec---------CcchhhhhHHHHHHHHHHhCCCEEEE----------------------
Confidence 45677889999999999998753 455565 6678999999999999962
Q ss_pred CCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchh---hhhhhhh-c
Q psy16872 196 YDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF---ANVVDDH-H 271 (605)
Q Consensus 196 Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~f---A~vVDD~-~ 271 (605)
+| .+=++++. | |+ ..++.|+.|+||.|||.. |.+++.+ .
T Consensus 319 -dG--------------------a~~~~~~~----~-----g~-------~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~ 361 (607)
T 1f7u_A 319 -KG--------------------AVLIDLTK----F-----NK-------KLGKAIVQKSDGTTLYLTRDVGAAMDRYEK 361 (607)
T ss_dssp -TT--------------------EEEEEGGG----T-----CT-------TTCEEEEECTTSCCCHHHHHHHHHHHHHHH
T ss_pred -CC--------------------cEEEEecc----c-----CC-------CCCceeEeccCCCcCCCCCcHHHHHHHHhh
Confidence 11 11122211 1 11 123579999999999985 6677776 4
Q ss_pred CCcceEE--cCCCCcccHHHHHHHHHHcCCCCC-cEEEecc-eecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 272 MNISHVL--RGVEWQISTTKHILIYKAFGWTPP-KFAHLPL-LLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 272 m~ITHVI--RG~d~l~stpkqi~ly~alG~~~P-~f~H~pl-il~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
++.+++| .|.||....++...+.+++||+.+ .+.|+++ +++ |||||.|. ++++++.++.+ ++| .+ +..
T Consensus 362 ~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~----kMSkR~G~~v~L~dLlde~~-~~a-~~-~~~ 434 (607)
T 1f7u_A 362 YHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ----GMSTRKGTVVFLDNILEETK-EKM-HE-VMK 434 (607)
T ss_dssp HCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE----SCCGGGTCCCBHHHHHHHHH-HHH-HH-HHH
T ss_pred cCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc----cccCCCCCcccHHHHHHHHH-HHH-HH-HHH
Confidence 7889998 999999988888899999999766 5899987 444 69999998 48999999844 366 22 333
Q ss_pred hcCCCCCCCCCCccccCCHHH-----HHHHhcccccccccccccccccccccccccccccccccccCCCCCCchhhhhhh
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKD-----LVEKVCNNATYNRIKPTIKEFGIFWFQTFFNEFDLQLVNENSCKVDLTNLNEFN 421 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~ee-----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~i~~~~a~fd~~KL~~~N 421 (605)
. +.+ + ..+..+..+..+ .++ .|+++.-.+++..||.+++.+++
T Consensus 435 -~-~~~-~-~~~~~e~~~~a~~vgi~avr----------------------------y~~Ls~~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 435 -K-NEN-K-YAQIEHPEEVADLVGISAVM----------------------------IQDMQGKRINNYEFKWERMLSFE 482 (607)
T ss_dssp -T-CHH-H-HTTCSCHHHHHHHHHHHHHH----------------------------HHHHSSCTTCCEECCHHHHHCCS
T ss_pred -h-Ccc-c-ccchhhHHHHHHHHHHHHHH----------------------------HHHhccCCCCCcccCHHHHHHHh
Confidence 1 110 0 001234555555 344 89999999999999999999998
Q ss_pred H---HHHHh
Q psy16872 422 R---AEIRR 427 (605)
Q Consensus 422 ~---~~i~~ 427 (605)
+ -||+-
T Consensus 483 g~t~pylqY 491 (607)
T 1f7u_A 483 GDTGPYLQY 491 (607)
T ss_dssp SSSHHHHHH
T ss_pred ccchHHHHH
Confidence 6 55553
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=171.75 Aligned_cols=262 Identities=14% Similarity=0.166 Sum_probs=160.0
Q ss_pred eeEecCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCC----------------CCCCcHHHHHHHHHHHHHcCC
Q psy16872 72 LKHFLTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTD----------------QTRFVPEAVEKLEQDLKWIGV 133 (605)
Q Consensus 72 v~~fp~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD----------------~~R~~~~~~~~I~~~L~wlGl 133 (605)
.|-+|+|||.+||||+|++++...+||- ..|.-++++.++| +......+.+.+.+++++||+
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4566899999999999999999999995 5899999999998 223355789999999999999
Q ss_pred CCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCC-cCcCCCH
Q psy16872 134 VPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDN-KCRNLTQ 205 (605)
Q Consensus 134 ~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~-~cr~ls~ 205 (605)
.+|.. ++.|+ +.+..+++.++|.++|.+|.. ||...+--. -......|. +| .|.-
T Consensus 97 ~~d~~---------~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l-~~~ev~~g~----~G~~c~~--- 159 (524)
T 2x1l_A 97 SFDRF---------IRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFF-TENETTEQP----DGTRIAT--- 159 (524)
T ss_dssp CCSEE---------EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGEEECT----TSCEEET---
T ss_pred cCCCC---------eecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccc-cHHHhccCC----CCCcccc---
Confidence 99953 45666 889999999999999999963 565321000 000000000 00 1210
Q ss_pred HHHHHHHhcCCCceEE------EEcCCCccceecccc-ce--ee----------ecCCCCCCCcEEEec---CCcc----
Q psy16872 206 EQIDEKLKENSKYCIR------FKLTNHTESWQDLVY-GD--IS----------YNVFHNEGDPVIIKS---DGFP---- 259 (605)
Q Consensus 206 ~e~~~~~~~g~~~~iR------~k~~~~~~~~~D~v~-G~--i~----------~~~~~~~~D~Vi~ks---DG~P---- 259 (605)
..|.+..+| |+++.-.....+.+. +. +. +- .....|..|-|. -|.|
T Consensus 160 -------~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~-~~~l~Dw~iSRqr~~WG~~iP~~ 231 (524)
T 2x1l_A 160 -------ETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFV-SGGLKDLSISRTTFDWGVPVPDH 231 (524)
T ss_dssp -------TTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHH-TTCCCCEECEESSCCSSCEETTE
T ss_pred -------ccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHH-HcCCcccceECCCCCcCccCCCC
Confidence 122222222 122110000000000 00 00 00 122346666553 2332
Q ss_pred ----cchh-hhhh----------------hhhcCCcceEEcCCCCcccHHHHH---HHHHHcCCCCC-cEEEecceecCC
Q psy16872 260 ----TYHF-ANVV----------------DDHHMNISHVLRGVEWQISTTKHI---LIYKAFGWTPP-KFAHLPLLLNLN 314 (605)
Q Consensus 260 ----tY~f-A~vV----------------DD~~m~ITHVIRG~d~l~stpkqi---~ly~alG~~~P-~f~H~plil~~d 314 (605)
.|-+ -..+ ..+ ..++.-+-|.|++. +.++ .+..++|+++| .+.++++++. +
T Consensus 232 ~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~-~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~ 307 (524)
T 2x1l_A 232 PDHVMYVWVDALTNYLTGVGFPDTESESFRRY-WPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R 307 (524)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHH-CSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEE-C
T ss_pred CCCEEEEecCCchHHHHHcCCCCCchHHHHhh-CCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEe-C
Confidence 1111 0100 001 12444455888873 4443 23456799877 3444487655 8
Q ss_pred CccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 315 GSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 315 g~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
|+|||||.|+ +++.++.+. |.++|+|.|++..+ .+ ..+..||.+.+.+
T Consensus 308 G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~-~~------~~d~~fs~~~l~~ 356 (524)
T 2x1l_A 308 GEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREV-PF------GQDGSYNEDAIIG 356 (524)
T ss_dssp SCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHS-CT------TSCEEECHHHHHH
T ss_pred CcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CC------CCCCCcCHHHHHH
Confidence 9999999997 799999987 99999999999865 22 4667899999887
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-15 Score=170.82 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=155.8
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCC-------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQT-------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~-------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.+||||+|+++..+.+||- ++..|+.-++|.+.+ .....+.+.+.+++++|||.+|.
T Consensus 35 py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 114 (564)
T 3kfl_A 35 YYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY 114 (564)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 599999999999999999999884 345677777776632 24568889999999999999996
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee-----CCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHH
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC-----FCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDE 210 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~ 210 (605)
. ++.+ ++.+..+++.++|.++|.+|.. ||...+-. +...+...| .+.+.+.|...
T Consensus 115 ~---------~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~-l~~~~~~~~-~~~~g~~c~~~------- 176 (564)
T 3kfl_A 115 F---------IRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF-LTAQNVADG-VDRDGKPCKVS------- 176 (564)
T ss_dssp E---------EETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE-ECGGGEEEE-ECTTSCEEEEE-------
T ss_pred c---------ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC-CCHHHhccC-cCCCCCEeccc-------
Confidence 3 2333 5788999999999999999974 56543210 000000000 01111233100
Q ss_pred HHhcCCCceEE------EEcCCCccceeccccc---eeeec---------CCCCCCCcEEEe---cC-------------
Q psy16872 211 KLKENSKYCIR------FKLTNHTESWQDLVYG---DISYN---------VFHNEGDPVIIK---SD------------- 256 (605)
Q Consensus 211 ~~~~g~~~~iR------~k~~~~~~~~~D~v~G---~i~~~---------~~~~~~D~Vi~k---sD------------- 256 (605)
...|.+..+| |+++.-.....+.+.. .+... ......|..|-| ++
T Consensus 177 -~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~ 255 (564)
T 3kfl_A 177 -LESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERH 255 (564)
T ss_dssp -TTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEE
T ss_pred -cCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCC
Confidence 0123333322 3332100000000100 00000 011345777766 22
Q ss_pred -------Ccccchhhhhh---hh---------h--c---CCcceEEcCCCCcccHHHHHHH----HHHcCCCCCc-EEEe
Q psy16872 257 -------GFPTYHFANVV---DD---------H--H---MNISHVLRGVEWQISTTKHILI----YKAFGWTPPK-FAHL 307 (605)
Q Consensus 257 -------G~PtY~fA~vV---DD---------~--~---m~ITHVIRG~d~l~stpkqi~l----y~alG~~~P~-f~H~ 307 (605)
+..+| ++..- ++ + . -.--|++ |.|++. .|..+ ..++|+++|. ...+
T Consensus 256 v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~-GkDii~---FH~~~wpa~L~a~g~~~~~~v~~h 330 (564)
T 3kfl_A 256 CIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVV-GKDILK---FHAIYWPAFLMSAELPLPERLVSH 330 (564)
T ss_dssp EECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE-EGGGHH---HHHTHHHHHHHHTTCCCCSCEEEE
T ss_pred EEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEE-eecccc---hHHHHHHHHHHhCCCCCCcEEEEc
Confidence 22222 22211 00 1 0 0124666 888874 45433 3567998874 3334
Q ss_pred cceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 308 PLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 308 plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+++ +.+|+|||||.|+ ++..++.+. |.++|+|.|++..+ +. ..+..||.+.+++
T Consensus 331 g~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~-~~------~~D~~fs~~~~~~ 385 (564)
T 3kfl_A 331 GWW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRES-NF------QDDGDYSDKNMVA 385 (564)
T ss_dssp CCE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHC-CS------SCCEECCHHHHHH
T ss_pred ccE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcC-Cc------ccCCCCCHHHHHH
Confidence 554 8899999999997 688999887 89999999999865 23 4667899999987
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=161.14 Aligned_cols=230 Identities=20% Similarity=0.212 Sum_probs=154.7
Q ss_pred ceeEe--cCCCCcCChhhHHHHHHHHHHHHHc--CC---eEEEeccCC--------------------------------
Q psy16872 71 KLKHF--LTSTGLLHLGGLRTALYNYLFAKSH--NG---SFILRIEDT-------------------------------- 111 (605)
Q Consensus 71 ~v~~f--p~PtG~LHiG~~RtAL~n~l~Ar~~--~G---~fiLRiEDT-------------------------------- 111 (605)
++.-| |.|+|+|||||+|++++-..+||-. .| .++--|.|.
T Consensus 121 V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (629)
T 2zue_A 121 VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKD 200 (629)
T ss_dssp EEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS
T ss_pred EEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccccccc
Confidence 34455 6888999999999999988888753 34 444445553
Q ss_pred CC----------------------------------------CCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccccc
Q psy16872 112 DQ----------------------------------------TRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQS 151 (605)
Q Consensus 112 D~----------------------------------------~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QS 151 (605)
|+ ...+..+.+.+.++++.|||.+|..+ ..|
T Consensus 201 ~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~---------~es 271 (629)
T 2zue_A 201 NPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLV---------WES 271 (629)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEE---------EHH
T ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcccccc---------CcC
Confidence 11 12245667788999999999998753 456
Q ss_pred cc--HHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 152 KR--LALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 152 er--~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
+. .+...++++.|.++|.+|.| + . ..|+| ..++ ++..
T Consensus 272 ~~~~~~~v~~vi~~L~~kG~~y~~--~-------------~---ge~~G------------------a~~v--~~~~--- 310 (629)
T 2zue_A 272 DIVRRKLFEIALELLSKNENFYIP--S-------------D---GKYRG------------------AFVM--DLRK--- 310 (629)
T ss_dssp HHHHTTHHHHHHHHHHTSTTEECC--S-------------S---STTTT------------------CEEE--ECTT---
T ss_pred ccccchhHHHHHHHHHHCCCcccc--c-------------c---CCcCC------------------cEEE--ECcc---
Confidence 55 55778999999999999975 1 0 11222 1222 2211
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhh---hhhhh--------hc---------------------CCcceE
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFA---NVVDD--------HH---------------------MNISHV 277 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA---~vVDD--------~~---------------------m~ITHV 277 (605)
| | . ....+..|+.|+||.+||... .+... .. .+..|+
T Consensus 311 -~-----g----~-~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 311 -L-----F----P-DMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIV 379 (629)
T ss_dssp -T-----C----S-SSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEE
T ss_pred -c-----C----C-ccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcE
Confidence 1 1 0 111234799999999999654 33331 01 155666
Q ss_pred E--cCCCCcccHHHHHHHHHHcCCCC-C-cEEEe--cceecCCCccccccCC--C-CChHHHHHcC--------------
Q psy16872 278 L--RGVEWQISTTKHILIYKAFGWTP-P-KFAHL--PLLLNLNGSKLSKRQG--D-MSVEAIRNSE-------------- 334 (605)
Q Consensus 278 I--RG~d~l~stpkqi~ly~alG~~~-P-~f~H~--plil~~dg~KLSKR~g--~-~sv~~~r~~G-------------- 334 (605)
| -|.+|..--++-....+++||+. + .+.|+ .+ ++.+|.|||||.| . ++++++.+++
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~-V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~ 458 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEH-VERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPA 458 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECC-EEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeee-EEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcc
Confidence 4 67777644444456667889975 3 57888 45 4456789999999 6 6899998875
Q ss_pred ------------CCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 335 ------------FLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 335 ------------~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+.++|++.|+..-. . .++-.|+++.|++
T Consensus 459 ~~~~~~~~~a~~vg~~AvRy~~L~~~--~------~~~~~Fd~d~~~~ 498 (629)
T 2zue_A 459 LSDEEKAEVAEKVGIGAIRYNLIKYS--P------DKKIIFRWEDVLN 498 (629)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSSC--T------TSCEECCHHHHSC
T ss_pred cchhhHHHHHHhcChhHhhHHHHhcC--C------CCCCeecHHHHHH
Confidence 78899999997643 2 5678899988876
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=149.64 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=69.1
Q ss_pred EecCCCCcCChhhHHH-HHHHHHHHHH--cCCeEEE---eccCCCC-------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 74 HFLTSTGLLHLGGLRT-ALYNYLFAKS--HNGSFIL---RIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 74 ~fp~PtG~LHiG~~Rt-AL~n~l~Ar~--~~G~fiL---RiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
-.|+|||.+||||+++ .+....+||- ..|.=++ -.|+.+. ...+..+.+.+.+++++|||+
T Consensus 9 ~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis 88 (722)
T 1rqg_A 9 ALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKIS 88 (722)
T ss_dssp CCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3469999999999998 8999999985 3465444 4444432 223567889999999999999
Q ss_pred CCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
||.. |+.+ ++.+.-+++..+|.++|.+|.
T Consensus 89 ~D~~---------~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 89 FDFF---------GRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp CSEE---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCC---------eeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9963 3433 366777889999999999996
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-12 Score=140.39 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=70.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|+|||.||||||++.+....+||-+ .|.=++-+-+||. .-....+.+.+.+++++|||++|-
T Consensus 18 pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~D~ 97 (542)
T 3u1f_A 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDY 97 (542)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 6999999999999999999999954 5777777777874 112467889999999999999986
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
... ....++.+.-+++..+|.++|.+|.
T Consensus 98 ~~~-------T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 98 FIR-------TTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp EEE-------TTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred Ccc-------CCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 321 1122456667788899999999996
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=121.87 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=139.0
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----C----CCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----T----DQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----T----D~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
..|||.|||||+..++-||......|.++++.|-| | |+++ ..+.+..+..++.++|++++... -
T Consensus 19 ~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~-------i 90 (340)
T 2g36_A 19 MRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSV-------I 90 (340)
T ss_dssp ECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSE-------E
T ss_pred eCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeE-------E
Confidence 38999999999999999999999999999999999 6 6665 66677778888999999998653 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
|.||+..+ |.+.+- .+-|.++-.+|+ |..+-+. ++ -|++-
T Consensus 91 f~qS~~~~-~~el~~-------~l~~~~~v~~l~--r~~~~k~----------------~~-----------~r~~~--- 130 (340)
T 2g36_A 91 FVQSGVKE-HAELAL-------LFSMIVSVSRLE--RVPTYKE----------------IK-----------SELNY--- 130 (340)
T ss_dssp EEGGGCTH-HHHHHH-------HHHTTSCHHHHH--TCHHHHT----------------C--------------------
T ss_pred EECCchHH-HHHHHH-------HHHccCCHHHHH--HhHHHHh----------------HH-----------HHhcc---
Confidence 78998765 433332 234889887764 2111110 00 01110
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~ 301 (605)
+|- -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-+.+.|+ ++.
T Consensus 131 --------------------~~~---~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~ 187 (340)
T 2g36_A 131 --------------------KDL---STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPE 187 (340)
T ss_dssp ---------------------CC---CSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred --------------------CCC---CChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCC
Confidence 000 011345555555666667899999999999988877777777664 345
Q ss_pred Cc--EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PK--FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~--f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|. ..|.|+|.+.+|+||||+.++ +.+.+ .|+.+..++...
T Consensus 188 P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a 230 (340)
T 2g36_A 188 PEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM 230 (340)
T ss_dssp CEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC
T ss_pred chhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC
Confidence 65 557899999999999999875 55553 899999999764
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-10 Score=117.01 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=139.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCC--CC---CcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQ--TR---FVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~--~R---~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.||||| ..++.+|......|.++++.|-| |+. .+ ...+....+..++.++|++++... -
T Consensus 43 ~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~-------i 114 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVR-------F 114 (364)
T ss_dssp CCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCE-------E
T ss_pred CCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceE-------E
Confidence 8899999999 99999999999999999999998 333 13 344666788899999999998643 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
+.||+.... ..+...++ .+-|.+|-.++... +.|-+ |.. .
T Consensus 115 ~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~----------~~~k~----------------------r~~--~- 154 (364)
T 2cya_A 115 VDAEELASD-KDYWGLVI----RVAKRASLARVRRA----------LTIMG----------------------RRA--E- 154 (364)
T ss_dssp EEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTT----------C----------------------------C--C-
T ss_pred Eecchhhcc-hHHHHHHH----HHHCcCcHHHHHcC----------chhhh----------------------hhc--C-
Confidence 789987643 23444443 23588887666310 00100 000 0
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~ 307 (605)
. +- -+-|..+|-.--+.|-...+.+||+.|.|...+.-...-+.+.+|...|...|.
T Consensus 155 ----------------~----~~---i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~ 211 (364)
T 2cya_A 155 ----------------E----AE---VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHT 211 (364)
T ss_dssp ----------------G----GG---SCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEE
T ss_pred ----------------C----CC---ccchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeecc
Confidence 0 00 012456676667777778899999999999988888888889999999999999
Q ss_pred cceecCC-----------------CccccccC--CCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 308 PLLLNLN-----------------GSKLSKRQ--GDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 308 plil~~d-----------------g~KLSKR~--g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|+|.+.+ |+||||++ +++.+.+ .|+.+..++...
T Consensus 212 ~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d------~p~~i~~Ki~~a 264 (364)
T 2cya_A 212 PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------SDDDIRRKIRKA 264 (364)
T ss_dssp CCCBCSSCC----------------CBCCSSSGGGSCBTTC------CHHHHHHHHHTS
T ss_pred ceeeCCCcccccccccccccccccccccCCCCCCCEeeccC------CHHHHHHHHHhC
Confidence 9999998 68999995 3466643 599999999763
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-10 Score=119.77 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=136.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||...||.+|..... +.++++.|-| .|++ ...+....+..++.++||+++... -|+
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~-------if~ 82 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKAC-------LFL 82 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeE-------EEE
Confidence 79999999999999999987776 8899999999 5665 455566778889999999998643 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+..+ +.+..-.| .|.++-.+|+.+. + |...... .+ |
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~--~--------~k~~~~~-----------~~------~------- 120 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMT--Q--------FKAKKAE-----------QT------R------- 120 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCH--H--------HHTTC-----------------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchH--H--------HHHHHHh-----------hc------c-------
Confidence 999876 43433222 3888888775422 1 1000100 00 0
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
.|.| .|- -+=|..+|-.--+.|-...+.+||+.|+|...+.-...-+.+.|| +..|.
T Consensus 121 ~~~~--------------~~~---~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~ 183 (348)
T 2yy5_A 121 NPNG--------------TLN---IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ 183 (348)
T ss_dssp --------------------C---CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_pred cccc--------------CCC---CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCe
Confidence 0111 000 122455555555666677899999999999988777777777775 67898
Q ss_pred EEE---ecceecCCC--ccccccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy16872 304 FAH---LPLLLNLNG--SKLSKRQGD----MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 304 f~H---~plil~~dg--~KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..| .|+|.+.+| +||||+.++ +.+. =.|+.+..=+..
T Consensus 184 ~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~------D~~~~i~~KI~~ 229 (348)
T 2yy5_A 184 FVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD------DPKEVVVKKIRQ 229 (348)
T ss_dssp EECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred eecccccccccCCCCcchhcCCCCCCCCceEeec------CCHHHHHHHHHh
Confidence 888 589999988 899999887 4443 368888888865
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=113.47 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=133.6
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCC--CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQT--RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~--R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.|||||+..++.||+.... |.++++.|-| |++. ....+....+..++.++|++++... -|+|
T Consensus 9 ~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-------if~q 80 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQAT-------LFIQ 80 (328)
T ss_dssp CCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEE-------EEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcE-------EEec
Confidence 78999999999999999997754 8899999999 8531 1345566678889999999998643 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+..+ +.+..-.| .|.++-.+++.+.. | .++...+
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~~----------~------------k~~~~~~--------------- 115 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMTQ----------F------------KEKSAGK--------------- 115 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCHH----------H------------HHHHTTC---------------
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHHH----------H------------HHHHhcc---------------
Confidence 99865 33333222 27888777643210 1 0111000
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~f 304 (605)
|. -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-|.+.+| +..|..
T Consensus 116 ------------------~~---~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~ 174 (328)
T 1i6k_A 116 ------------------EA---VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEA 174 (328)
T ss_dssp ------------------SS---CCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEE
T ss_pred ------------------CC---CCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCee
Confidence 00 011344555555566667899999999999988877777777776 567776
Q ss_pred EE---ecceecCCC--ccccccCCC----CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNG--SKLSKRQGD----MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg--~KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+ .|+|.+.+| +||||+.++ +.+. =.|+.+..=+...
T Consensus 175 li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~------d~~~~i~~KI~~a 220 (328)
T 1i6k_A 175 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL------DDAKTIEKKIKSA 220 (328)
T ss_dssp ECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTT------CCHHHHHHHHHHC
T ss_pred eeccccccccCCCCCccCCCCCCCCcCceeeec------CCHHHHHHHHHhc
Confidence 54 689999999 899999987 4443 3788888888764
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-09 Score=110.90 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=134.5
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcC-CeEEEeccC-C---C---CC-CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHN-GSFILRIED-T---D---QT-RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGP 147 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~-G~fiLRiED-T---D---~~-R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gp 147 (605)
.|||.|||||+..++.+|+.....| .+.++.|-| | . ++ ....+.+..+..++.++|++++... -
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~-------i 81 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT-------L 81 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE-------E
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE-------E
Confidence 7899999999999999999877777 788888888 2 2 21 1345666778888999999998543 3
Q ss_pred ccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCC
Q psy16872 148 YLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNH 227 (605)
Q Consensus 148 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 227 (605)
+.||+..+ |.+.+.. +-|.++-.+|+. ..+ ..+++..+
T Consensus 82 ~~qS~~~~-~~el~~~-------l~~~~~~~~l~r--~~~--------------------~k~r~~~~------------ 119 (337)
T 2el7_A 82 FVQSHVPE-HTELSWV-------FTTLTPLGDLTR--MTQ--------------------FKDKASKQ------------ 119 (337)
T ss_dssp EEGGGSTH-HHHHHHH-------HHHTSBHHHHHT--SHH--------------------HHHHTTSS------------
T ss_pred EEcCcchh-hHHHHHH-------HHccCCHHHHHH--hHH--------------------HHHHhccC------------
Confidence 79999865 3333322 458888776631 111 11111100
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc----C--CCC
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF----G--WTP 301 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al----G--~~~ 301 (605)
|- -+=|..+|-.--+.|-...+.++|+.|+|...+.-...-|.+.+ | +..
T Consensus 120 ---------------------~~---~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~ 175 (337)
T 2el7_A 120 ---------------------ET---VWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPE 175 (337)
T ss_dssp ---------------------SC---CBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ---------------------CC---CChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCC
Confidence 00 01134455555556666789999999999998877777777655 6 678
Q ss_pred CcEEEe---cceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 302 PKFAHL---PLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 302 P~f~H~---plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
|...|. |+|.+.+| +||||+.++ +.+.+ .|+.+..++...
T Consensus 176 P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~a 220 (337)
T 2el7_A 176 PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKIQHL 220 (337)
T ss_dssp CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHHHTC
T ss_pred CeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHHHhC
Confidence 988887 89999999 999999886 44432 499999999764
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-09 Score=108.77 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=129.8
Q ss_pred eeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-C----C--CCCCcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 72 LKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-T----D--QTRFVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-T----D--~~R~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
.+-|- .|||.||||| ..++.+|......|.++++.|-| | | ......+....+..++.++|++ ..
T Consensus 29 ~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~----- 101 (314)
T 2zp1_A 29 KSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK----- 101 (314)
T ss_dssp EEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE-----
T ss_pred CEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE-----
Confidence 34554 7899999999 99999999999999999998844 3 2 2245667778899999999998 33
Q ss_pred CccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEE
Q psy16872 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRF 222 (605)
Q Consensus 143 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~ 222 (605)
-++||+.... ..+.+.++ .+-|.+|-.++.... .|-+ |
T Consensus 102 ----~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~----------~~~~--~--------------------- 139 (314)
T 2zp1_A 102 ----YVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSM----------ELIA--R--------------------- 139 (314)
T ss_dssp ----EEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT----------TTTS--C---------------------
T ss_pred ----EEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccc----------hhhh--h---------------------
Confidence 2569988654 34455444 345888877764221 0100 0
Q ss_pred EcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCC
Q psy16872 223 KLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPP 302 (605)
Q Consensus 223 k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P 302 (605)
. .++ -+=|..+|-.--+.|-...+.+||+.|+|...+ +.+-+-+.-+.|
T Consensus 140 -~----------------------~~~----~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~----~~l~R~i~~~~~ 188 (314)
T 2zp1_A 140 -E----------------------DEN----PKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI----HMLARELLPKKV 188 (314)
T ss_dssp -C----------------------CSS----CCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH----HHHHHHHSSSCC
T ss_pred -c----------------------cCC----CCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH----HHHHHHhcCCCc
Confidence 0 000 011334444444555556799999999999853 334444444678
Q ss_pred cEEEecceecCCC-ccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 303 KFAHLPLLLNLNG-SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 303 ~f~H~plil~~dg-~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
...|.|+|.+.+| +||||+.++ +++. =.|+.+..=+...
T Consensus 189 ~~~~~~~l~~l~G~~KMSKS~~~~I~L~------d~~~~i~~KI~~a 229 (314)
T 2zp1_A 189 VCIHNPVLTGLDGEGKMSSSKGNFIAVD------DSPEEIRAKIKKA 229 (314)
T ss_dssp EEEEECCCBCTTSSSBCCTTTTCSCBTT------CCHHHHHHHHHHS
T ss_pred EEeeccccccCCcccccCCCCcceecCC------CCHHHHHHHHHhC
Confidence 8899999999999 799999654 4554 2688888888764
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-09 Score=111.90 Aligned_cols=200 Identities=21% Similarity=0.249 Sum_probs=133.4
Q ss_pred ceeEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCC------CcHHHHHHHHHHHHHcCCCCCCCccCC
Q psy16872 71 KLKHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTR------FVPEAVEKLEQDLKWIGVVPDESETVG 142 (605)
Q Consensus 71 ~v~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R------~~~~~~~~I~~~L~wlGl~~De~p~~~ 142 (605)
+.+-|- .|||.|||||+..++.+|.........|++.-|+|.... ...+....+..++.++|++++...
T Consensus 22 ~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~--- 98 (351)
T 1yi8_B 22 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT--- 98 (351)
T ss_dssp CSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE---
T ss_pred CcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE---
Confidence 345554 889999999999999999766555445666555543221 345666678889999999998543
Q ss_pred CccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHh-cCCCceEE
Q psy16872 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLK-ENSKYCIR 221 (605)
Q Consensus 143 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~-~g~~~~iR 221 (605)
-|.||+..+ |.+.+- .|.|.++-.+|.. ..+ +.+++. .|
T Consensus 99 ----i~~qS~~~~-~~el~~-------~l~~~~~v~~l~r--~~~--------------------~k~~~~~~~------ 138 (351)
T 1yi8_B 99 ----CVVQSAVPE-LAELTV-------YFLNLVTVSHLRQ--NPT--------------------VKAEIAQKG------ 138 (351)
T ss_dssp ----EEEGGGCTH-HHHHHH-------HHHTTSBHHHHHT--CHH--------------------HHHHHHHHT------
T ss_pred ----EEEcCchhh-HHHHHH-------HHhccCCHHHHHh--hhH--------------------HHHHHhhcC------
Confidence 378998865 333322 3459999877642 111 111111 00
Q ss_pred EEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHc----
Q psy16872 222 FKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAF---- 297 (605)
Q Consensus 222 ~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~al---- 297 (605)
|. .+. +-|..+|-.--+.|-...+.+||+.|+|...+.-...-|.+.|
T Consensus 139 ---------f~--------------~~~-----~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~y 190 (351)
T 1yi8_B 139 ---------YG--------------ERV-----PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALY 190 (351)
T ss_dssp ---------CT--------------TCC-----BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred ---------CC--------------CCC-----chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhc
Confidence 00 000 1234556666666666789999999999998888777777765
Q ss_pred C--CCCCcEE--EecceecCCCc-cccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 298 G--WTPPKFA--HLPLLLNLNGS-KLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 298 G--~~~P~f~--H~plil~~dg~-KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
| ++.|... |.|+|.+.+|+ ||||+.++ +.+. =.|+.+..++...
T Consensus 191 g~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~a 240 (351)
T 1yi8_B 191 APVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG------DSADEVARKVMGM 240 (351)
T ss_dssp CSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT------CCHHHHHHHHHTC
T ss_pred ccccCCCeeeeecCccccCCCCccccCCCCCCeecCC------CCHHHHHHHHHhc
Confidence 4 5667643 58999999997 99999886 3443 2499999999763
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=117.45 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=67.2
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCCCC-------------C--------------------Cc
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTDQT-------------R--------------------FV 117 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD~~-------------R--------------------~~ 117 (605)
.-+|+|||.|||||+++.+....+||- ..|.-++.+-.+|.- . .+
T Consensus 44 ~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~ 123 (821)
T 1ile_A 44 EGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESV 123 (821)
T ss_dssp CCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHH
Confidence 445799999999999999999999995 468777766666531 1 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCccCCCccCcccccc--cHHHHHHHHHHHHHCCCEee
Q psy16872 118 PEAVEKLEQDLKWIG--VVPDESETVGGNYGPYLQSK--RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 118 ~~~~~~I~~~L~wlG--l~~De~p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 172 (605)
..+.+.+.+.|++|| ++||.. |+.++ +.+.-+....+|.++|.+|+
T Consensus 124 ~~~~~~~~~~~~~lg~~~dwd~~---------~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 124 FTYEKEWEAFTERIAYWVDLEDA---------YATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTTHHHHTTHHHHTTCCCEEEEE---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCeEccCCC---------eEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 256677899999999 899873 44432 33334556679999999997
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=117.63 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=67.4
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC------------------CCC--------------cHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ------------------TRF--------------VPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~------------------~R~--------------~~~~~ 121 (605)
|+|||.|||||+++.+....+||.+ .|.-++.+-.+|. .+. +.++.
T Consensus 43 Py~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~ 122 (862)
T 1gax_A 43 PNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122 (862)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999964 6877776655552 111 46778
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.+.|+.||+..|=. -+|+.. ++.+.-+....+|.++|.+|+
T Consensus 123 ~~~~~q~~rlG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 123 GTILKQLKRLGASADWS-------REAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHTTCCCCGG-------GCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCccccCC-------CCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99999999999876622 123333 344555677789999999997
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=90.59 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=120.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC-CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT-RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~-R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.|||||...+|.+|..-.. |.+.++-|-|- |++ ....+....+..++..+|++++... -|.|
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~-------i~~q 82 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV-------FWLQ 82 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSE-------EEEG
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE-------EEEC
Confidence 79999999999999988866544 65555544442 221 1244556667788888999987653 3789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccc
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTES 230 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~ 230 (605)
|+-.+ |.+.+-.| -|+++-.+|+.. .+ ..+++..+.
T Consensus 83 S~~~~-~~el~~~l-------~~~~~~~~l~r~--~~--------------------~K~~~~~~~-------------- 118 (322)
T 3tzl_A 83 SDVKE-VMELYWIL-------SQFTPMGLLERA--HS--------------------YKDKVAKGL-------------- 118 (322)
T ss_dssp GGCTH-HHHHHHHH-------GGGCBHHHHHSC--HH--------------------HHHHHHTTC--------------
T ss_pred Ccchh-HHHHHHHH-------hccCcHHHHHhh--hH--------------------HHHHHccCC--------------
Confidence 98765 33333322 388887766311 10 111121110
Q ss_pred eeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCcE
Q psy16872 231 WQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPKF 304 (605)
Q Consensus 231 ~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~f 304 (605)
+ -+=|..+|-.--+.|-...+.++|.-|.|...+--.=.-+.+.+| +..|.-
T Consensus 119 -----------------~-----~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~ 176 (322)
T 3tzl_A 119 -----------------S-----ASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEA 176 (322)
T ss_dssp -----------------C-----CBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEE
T ss_pred -----------------C-----CchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchh
Confidence 0 011345555555666667899999999998754332233444454 355665
Q ss_pred EE---ecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 305 AH---LPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 305 ~H---~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.| .|+|.+.+|+||||+.++ +.+.+ .|+.+...+...
T Consensus 177 ~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~~a 217 (322)
T 3tzl_A 177 RVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQISSI 217 (322)
T ss_dssp ECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHHTC
T ss_pred hhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHHhc
Confidence 55 789999999999999875 44432 799999999763
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=90.68 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=69.4
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccCCC-CChHHHHHcCC
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQGD-MSVEAIRNSEF 335 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~g~-~sv~~~r~~G~ 335 (605)
..+|-+--+.|-...+.++|+-|.|...|.-.-.-|.+.+|..+|...|.|+|.+.+|+ ||||+.++ +++.+
T Consensus 172 ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------ 245 (432)
T 1h3f_A 172 ELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------ 245 (432)
T ss_dssp GGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------
T ss_pred ccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC------
Confidence 45666666677777789999999999988777778888999888878899999999997 99999875 56654
Q ss_pred CHHHHHHHHHHh
Q psy16872 336 LPNALINFVTNF 347 (605)
Q Consensus 336 ~PeAl~nfla~l 347 (605)
.|+.+..++...
T Consensus 246 sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 246 PPEAMFKKLMRV 257 (432)
T ss_dssp CHHHHHHHHHTS
T ss_pred CHHHHHHHHhCC
Confidence 899999999763
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=84.15 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=116.7
Q ss_pred eeEec--CCCCcCChhhHHHHH-HHHHHHHHcCCeEEEeccC-C----CC---CCCcHHHHHHHHHHHHHcCCCCCCCcc
Q psy16872 72 LKHFL--TSTGLLHLGGLRTAL-YNYLFAKSHNGSFILRIED-T----DQ---TRFVPEAVEKLEQDLKWIGVVPDESET 140 (605)
Q Consensus 72 v~~fp--~PtG~LHiG~~RtAL-~n~l~Ar~~~G~fiLRiED-T----D~---~R~~~~~~~~I~~~L~wlGl~~De~p~ 140 (605)
++-|- .|||.|||||.-.++ .+| +-..+|.+.++=|-| + |+ .....+....+..++..+|++++...
T Consensus 74 ~~i~sG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~- 151 (392)
T 3jxe_A 74 FFLYTGRGPSGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF- 151 (392)
T ss_dssp CEEEEEECCSSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE-
T ss_pred eEEEeccCCCCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE-
Confidence 34453 788999999999996 788 455567755544433 2 22 12234555567777888899987653
Q ss_pred CCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceE
Q psy16872 141 VGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCI 220 (605)
Q Consensus 141 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~i 220 (605)
-|+||+-.+ |.+.+-.|- |.+|-.++.. +. |
T Consensus 152 ------i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~----------------------------~~--~----- 182 (392)
T 3jxe_A 152 ------IFQNSEFTK-IYEMAIPIA-------KKINFSMAKA----------------------------VF--G----- 182 (392)
T ss_dssp ------EEETTTSTH-HHHHHHHHH-------HHSBHHHHHH----------------------------HH--C-----
T ss_pred ------EEECchhHH-HHHHHHHHH-------hhCCHHHHhh----------------------------hh--c-----
Confidence 378999887 555555552 5455443311 00 0
Q ss_pred EEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcC-CcceEEcCCCCcccHHHHHHHHHHcCC
Q psy16872 221 RFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHM-NISHVLRGVEWQISTTKHILIYKAFGW 299 (605)
Q Consensus 221 R~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m-~ITHVIRG~d~l~stpkqi~ly~alG~ 299 (605)
++ | . . +=|..+|-+--+.|-... .-++|.-|.|...+--.=.-+.+.+|+
T Consensus 183 -~~---------~----------~----~-----~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~ 233 (392)
T 3jxe_A 183 -FT---------E----------Q----S-----KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGY 233 (392)
T ss_dssp -CC---------T----------T----S-----BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTS
T ss_pred -cC---------C----------C----C-----chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCC
Confidence 00 0 0 0 012333433334443344 367888999987543333345567899
Q ss_pred CCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 300 TPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 300 ~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
..|.-.|.|+|.+.+| +||||+.++ +.+. =.|+.+..=+..
T Consensus 234 ~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~------D~p~~I~kKI~k 278 (392)
T 3jxe_A 234 YKTAALHSKFVPSLTSLSGKMSASKPETAIYLT------DSPEDVEKKVWK 278 (392)
T ss_dssp CCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTT------CCHHHHHHHHHT
T ss_pred CCCeeeecccccCCCCCccccccCCCCCeeeCC------CCHHHHHHHHHh
Confidence 8999899999999999 599999875 4442 357777776655
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.2e-05 Score=94.41 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=69.6
Q ss_pred EecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCCC
Q psy16872 74 HFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVVP 135 (605)
Q Consensus 74 ~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~~ 135 (605)
.+|+|||.|||||+|+++....+||.+ .|.-++.+-.+|. ......+++.+.++|+.||+..
T Consensus 40 ~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~ 119 (878)
T 2v0c_A 40 MFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp CCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 447999999999999999999999864 4766666555542 1234678899999999999876
Q ss_pred C--CCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 136 D--ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 136 D--e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
| .... ...+++.+.-+....+|.++|++|.
T Consensus 120 Dw~~~~~-------T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 120 DWDREVT-------TCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp CGGGCCB-------TTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcCCCee-------cCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6 3210 1244566677888999999999996
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=84.18 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 272 MNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 272 m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+-++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+. =.|+.+..-+...
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~~KI~~y 321 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMT------DTPKQIQKKINKY 321 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTT------CCHHHHHHHHHHH
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEecc------CCHHHHHHHhhhh
Confidence 35788999999887655445666789998898899999999999 899999865 5553 2688888888763
Q ss_pred c
Q psy16872 348 G 348 (605)
Q Consensus 348 G 348 (605)
.
T Consensus 322 A 322 (432)
T 2ip1_A 322 A 322 (432)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.9e-05 Score=92.57 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=68.9
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC----------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ----------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~----------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
..+|+|||.|||||+|++++...+||-+ .|.-++..-.+|. ......+++.|.++|+.||+.
T Consensus 59 ~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis 138 (880)
T 4arc_A 59 SMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFG 138 (880)
T ss_dssp ECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3457999999999999999999999964 5877776555442 112346688899999999987
Q ss_pred CCCCccCCCccCcccc--cccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQ--SKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~Q--Ser~~~Y~~~a~~Li~~G~AY~ 172 (605)
.|-.- +|+. .++.+.-+....+|.++|.+|.
T Consensus 139 ~Dw~~-------~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 139 YDWSR-------ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CCGGG-------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCC-------CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 77210 1232 3455566778889999999997
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-05 Score=90.64 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=58.5
Q ss_pred CcceEEcCCCCcccH-HHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQIST-TKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~st-pkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.++.-+-|.||+..= -..+++..+ +|- +.| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.|++..
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~~ 680 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSL 680 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHHH
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHhc
Confidence 445445688886420 011222223 332 234 4788888665 89999999997 689999887 8999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 681 ~-~~------~~d~~fs~~~~~~ 696 (810)
T 1wkb_A 681 A-EH------DSDFDWRRKEVGK 696 (810)
T ss_dssp C-CT------TCCEEECHHHHHH
T ss_pred C-CC------CCCcccCHHHHHH
Confidence 6 23 4556677765544
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=81.44 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=66.2
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC--CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD--MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~--~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +++.
T Consensus 168 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~--- 244 (432)
T 2jan_A 168 EFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLD--- 244 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEcc---
Confidence 445555555555555 8999999999998776666777888887777789999999999999999887 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=..|..+..++..
T Consensus 245 d~~tsp~~i~qki~~ 259 (432)
T 2jan_A 245 PQMTSPYAWYQYFVN 259 (432)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 233588888888864
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.4e-05 Score=79.50 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=52.1
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccC--CCCChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQ--GDMSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~--g~~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
=++|--|.|...+--.=.-+.+.+|.+.|...|.|+|.+.+|. ||||++ +++.+.+ .|+.+..-+....
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kKI~k~A 296 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERKINKLA 296 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHHHHHhc
Confidence 4566679998754433345667899988988899999999995 999994 3455543 8999999887753
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=97.71 E-value=5e-05 Score=83.36 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=56.1
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHhc
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNFG 348 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~lG 348 (605)
+-++|..|.|...+--.-.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +++. =.|+.+..=+....
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~kKi~~yA 376 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNKHA 376 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTT------CCHHHHHHHHHHHS
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeec------CCHHHHHHHhcccc
Confidence 5588889999987766666667889998899999999999999 899999876 4553 36888888887633
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.8e-05 Score=79.96 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=42.2
Q ss_pred ceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 275 SHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 275 THVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+. =.|+.+..=+...
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~------D~p~~i~kKI~k~ 292 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVN------DNEESIRNKIMKY 292 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTT------CCHHHHHHHHHHH
T ss_pred eecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEecc------CCHHHHHHHHHhh
Confidence 68889999876444334555678999999999999999999 799999865 5553 3788888888764
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00068 Score=72.23 Aligned_cols=198 Identities=18% Similarity=0.171 Sum_probs=121.1
Q ss_pred eEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----C-CC-CCCc---HHHH-HHHH----HHHHHcCCCCC
Q psy16872 73 KHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----T-DQ-TRFV---PEAV-EKLE----QDLKWIGVVPD 136 (605)
Q Consensus 73 ~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----T-D~-~R~~---~~~~-~~I~----~~L~wlGl~~D 136 (605)
+-|- .|||.|||||--.++.+|..-...|.+.++=|-| | |+ .+.. .+.. ..+. .++..+|++++
T Consensus 35 ~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 35 QHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPK 114 (375)
T ss_dssp BEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGG
T ss_pred EEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4554 8999999999666888888888888777765555 2 32 1222 2233 3344 77888999887
Q ss_pred CCccCCCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCC
Q psy16872 137 ESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENS 216 (605)
Q Consensus 137 e~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~ 216 (605)
... -+.||+-.+.. .+..-++. +-|.++-.++.. . +.|
T Consensus 115 k~~-------i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~--~--------~~~-------------------- 152 (375)
T 2cyc_A 115 KVE-------FVLASEILEKG-DYWQTVID----ISKNVTLSRVMR--S--------ITI-------------------- 152 (375)
T ss_dssp GSE-------EEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHH--T--------GGG--------------------
T ss_pred ceE-------EEEcchhhhhh-HHHHHHHH----HhceeEHHHHhc--c--------chh--------------------
Confidence 543 37888654432 22222221 113344333210 0 000
Q ss_pred CceEEEEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHH
Q psy16872 217 KYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKA 296 (605)
Q Consensus 217 ~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~a 296 (605)
. ++. .+|. -+=|..+|-.--+.|-...+.++|+-|.|...+--.=.-+.+.
T Consensus 153 ---------------k----~r~-------~~~~---i~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r 203 (375)
T 2cyc_A 153 ---------------M----GRQ-------MGEA---IDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQK 203 (375)
T ss_dssp ---------------G----TCC-------CCTT---CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGG
T ss_pred ---------------h----hhc-------cCCC---CChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHH
Confidence 0 000 0010 0124566666667777778999999999987543333345566
Q ss_pred cCC--------C-CCcEEEecceecCCC------------------ccccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 297 FGW--------T-PPKFAHLPLLLNLNG------------------SKLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 297 lG~--------~-~P~f~H~plil~~dg------------------~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
+|. . .|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.+..++...
T Consensus 204 ~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d------~p~~i~~KI~~A 277 (375)
T 2cyc_A 204 LRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD------SPEEIRQKLRKA 277 (375)
T ss_dssp CSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC------CHHHHHHHHHHS
T ss_pred hCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC------CHHHHHHHHHHh
Confidence 776 3 677789999999998 89999973 456642 599999999873
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=76.77 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=117.3
Q ss_pred eEec--CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC-----CCC----CCcHHHHHHHHHHHHHcCCCCCCCccC
Q psy16872 73 KHFL--TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT-----DQT----RFVPEAVEKLEQDLKWIGVVPDESETV 141 (605)
Q Consensus 73 ~~fp--~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT-----D~~----R~~~~~~~~I~~~L~wlGl~~De~p~~ 141 (605)
+.|- .|||.|||||.-.++.+|..-...|.+.++=|-|- |+. ....+..+.+..++..+|++++...
T Consensus 42 ~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~-- 119 (348)
T 2j5b_A 42 TAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTR-- 119 (348)
T ss_dssp EEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEE--
T ss_pred EEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceE--
Confidence 4454 89999999997677888887777777777755551 331 2334556677777778899887542
Q ss_pred CCccCcccccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEE
Q psy16872 142 GGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIR 221 (605)
Q Consensus 142 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR 221 (605)
-+.||+-+..+..+...++ |....-.+..+. + ...+. + |
T Consensus 120 -----i~~qs~~~~~~~~~~~~~~-------~v~~~~~~~~m~-----~--~~~~~-----------------~-----r 158 (348)
T 2j5b_A 120 -----FIWASEFIASNPSYIERML-------DIAEFSTISRVK-----R--CCQIM-----------------G-----R 158 (348)
T ss_dssp -----EEEHHHHHHHCHHHHHHHH-------HHHHHHHHHHHT-----C-------------------------------
T ss_pred -----EEECCHhhhhhhHHHHHHH-------HHHhheeHHHHH-----h--hhhhh-----------------h-----h
Confidence 2678873221111111111 111111111110 0 00000 0 0
Q ss_pred EEcCCCccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcC---CcceEEcCCCCcccHHHHHHHHHHcC
Q psy16872 222 FKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHM---NISHVLRGVEWQISTTKHILIYKAFG 298 (605)
Q Consensus 222 ~k~~~~~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m---~ITHVIRG~d~l~stpkqi~ly~alG 298 (605)
.. +|.+ +=|..+|-.--+.|-... +.++|+-|.|...+--.=.-+.+.+|
T Consensus 159 --~~----------------------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~ 211 (348)
T 2j5b_A 159 --NE----------------------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG 211 (348)
T ss_dssp -------------------------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTT
T ss_pred --hc----------------------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhC
Confidence 00 0100 124555655556665566 89999999998765444445567899
Q ss_pred CCCCcEEEecceecC-CC-ccccccCC--CCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 299 WTPPKFAHLPLLLNL-NG-SKLSKRQG--DMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 299 ~~~P~f~H~plil~~-dg-~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
...|...|.|+|.+. +| +||||+.+ ++.+. =.|+.+..=+...
T Consensus 212 ~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~------d~p~~i~kKI~ka 258 (348)
T 2j5b_A 212 LKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMD------DTEQEVSEKISRA 258 (348)
T ss_dssp CCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTT------CCHHHHHHHHHHS
T ss_pred CCCceeecCccccCCCCcccccccCCCCCeEeec------CCHHHHHHHHhcc
Confidence 988988999999998 67 69999973 46664 3788888888763
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.48 E-value=9.3e-05 Score=79.61 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=52.9
Q ss_pred CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCC--CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQG--DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g--~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
+.++|.-|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.+ ++.+. =.|+.+..=+..
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~------D~p~~I~kKI~k 314 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD------DAQDTIRKKIIA 314 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCC------CCHHHHHHHHHh
Confidence 5678889999875544344566789999998889999999999 69999973 46664 378888887766
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=86.22 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=61.3
Q ss_pred CcceEEcCCCCcccHHHHHHHHHH---cCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 273 NISHVLRGVEWQISTTKHILIYKA---FGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 273 ~ITHVIRG~d~l~stpkqi~ly~a---lG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-.+..+-|.||+.. -.|..++.+ .|..|+ .+.| +++++.+|+||||+.|+ ++..++.+. |.++|+|.|++.
T Consensus 548 P~Dl~~~G~D~~r~-wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 548 PADMYLEGSDQYRG-WFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SBSEEEEEGGGGTT-HHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CceEEEEEeccccc-HHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 34555668887632 234333333 355443 2455 88888899999999998 689999987 999999999986
Q ss_pred hcCCCCCCCCCCccccCCHHHHHH
Q psy16872 347 FGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 347 lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 625 -~-~~------~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 625 -T-DY------LADVRISDEILKQ 640 (917)
T ss_dssp -S-CT------TSCEECCHHHHHH
T ss_pred -c-CC------CCCcccCHHHHHH
Confidence 4 23 4567788887765
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=76.28 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRN 332 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~ 332 (605)
..+|-.--+.|-... +.+.++-|.|...+--.-.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 172 ~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d--- 248 (322)
T 2yxn_A 172 EFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP--- 248 (322)
T ss_dssp HHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST---
T ss_pred hhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC---
Confidence 444544445554455 7887778999987666666677788877776788999999999999999875 45543
Q ss_pred cCCCHHHHHHHHHH
Q psy16872 333 SEFLPNALINFVTN 346 (605)
Q Consensus 333 ~G~~PeAl~nfla~ 346 (605)
.=..|+.+..++..
T Consensus 249 ~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 249 KKTSPYKFYQFWIN 262 (322)
T ss_dssp TTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 33678888888854
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00035 Score=74.38 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=107.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCC----CCCCC----cHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDT----DQTRF----VPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDT----D~~R~----~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
.|||.|||||.-.++.++.+- +.|...++=|-|- .+.-. ..........++-.+|++++... -|
T Consensus 78 ~PTG~lHLGhyv~~~~~~~lq-~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~-------if 149 (372)
T 3a04_A 78 MPSGKFHFGHKLTVDQLIYLQ-KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE-------FY 149 (372)
T ss_dssp CCCSCCBHHHHHHHHHHHHHH-HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE-------EE
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc-------hh
Confidence 899999999999777665544 4566776656552 22111 23444555667778899998764 37
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCc
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHT 228 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 228 (605)
+||+...-|.+.+..+ .|..+-.+++... + ..+.....-
T Consensus 150 ~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~~~~~~~y------------------ 188 (372)
T 3a04_A 150 FQTNRGTPYFRLIQLF-------SGKVTAAEMEAIY------G----------ELTPAKMMA------------------ 188 (372)
T ss_dssp EGGGSCHHHHHHHHHH-------TTSSCHHHHHHHH------S----------SCCHHHHHH------------------
T ss_pred hhccchHHHHHHHHHH-------HhhhhHHHHhhhh------h----------ccCcccccC------------------
Confidence 8998665554444333 2555555443210 0 011111000
Q ss_pred cceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC----CCCCcE
Q psy16872 229 ESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG----WTPPKF 304 (605)
Q Consensus 229 ~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG----~~~P~f 304 (605)
.+.. ..|.++...|....| .=+||=.|.|....--.-.-+.+.|| ++.|.-
T Consensus 189 ---------P~lq-----AaDil~~~~d~~~gy-----------~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~ 243 (372)
T 3a04_A 189 ---------SLTQ-----AADILHVQLDEYGGY-----------RHVVVPVGADQDPHLRLTRDLADRMAGVVELERPAS 243 (372)
T ss_dssp ---------HHHH-----HHHHHGGGSGGGTCC-----------CCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEE
T ss_pred ---------Ccch-----hHHHhhhcCccccCc-----------cceecccchhhHHHHHHHHHHHHHhcCcccccChhh
Confidence 0000 012222222212222 23577789987632111123344565 677888
Q ss_pred EEecceecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHH
Q psy16872 305 AHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 305 ~H~plil~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.+++-+.+|.||||+.++.+|. .-=.|+.+..=+..
T Consensus 244 ~~~~~~pgldG~KmS~S~~ns~I~----l~D~p~~i~kKI~k 281 (372)
T 3a04_A 244 TYHKLQPGLDGRKMSSSRPDSTIF----LTDPPEVARNKLFR 281 (372)
T ss_dssp EEECCCBCTTSSBCCTTSGGGSCB----TTCCHHHHHHHHHT
T ss_pred hhhcccCCCCCCccCCCCCCcccc----cCCCHHHHHHHHhc
Confidence 999998899999999998664431 11268888887765
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00029 Score=76.47 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=51.9
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCC--CChHHHHHcCCCHHHHHHHHHH
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGD--MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-++|--|.|...+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +++. =.|+.+..-+..
T Consensus 257 ~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------D~p~~I~kKI~~ 327 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNK 327 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTT------CCHHHHHHHHHH
T ss_pred ceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeecc------CCHHHHHHHhhc
Confidence 467778999876544444555778988899899999999999 899999876 4554 368888888876
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=78.63 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=42.3
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCC-CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQG-DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g-~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-++|..|.|...+--.=.-+.+.+|.+.|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.+..-+..
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D------~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD------TEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTTC------CHHHHHHHHC-
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCCC------CHHHHHHHHHh
Confidence 567889999876544444566778999998899999999999 79999954 355543 78888877754
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00082 Score=72.64 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=64.9
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-CCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-GWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-G~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.++ +++.
T Consensus 167 ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~--- 243 (420)
T 1jil_A 167 EFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLD--- 243 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecC---
Confidence 345555555665556 8999999999987766666777888 877777799999999999999999875 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=.+|+.+..++..
T Consensus 244 d~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 244 AEKTSPYEFYQFWIN 258 (420)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 223578888888864
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00024 Score=84.35 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=59.1
Q ss_pred CcceEEcCCCCcccH-HHHHHHHHH-cCC-CCC-cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 273 NISHVLRGVEWQIST-TKHILIYKA-FGW-TPP-KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 273 ~ITHVIRG~d~l~st-pkqi~ly~a-lG~-~~P-~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.++..+-|.|++..= -..+++..+ +|- +.| .+.|+++++. +|+||||+.|+ +++.++.+. |.++|+|.|++..
T Consensus 603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~~ 680 (967)
T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSL 680 (967)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHHH
T ss_pred CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHhC
Confidence 344445688886420 011122233 342 234 5788888776 89999999998 689999987 9999999999876
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .+ ..+..||.+.+..
T Consensus 681 ~-~~------~~d~~fs~~~~~~ 696 (967)
T 1wz2_A 681 A-EH------DSDFDWRRKEVGK 696 (967)
T ss_dssp C-CT------TCCEEECHHHHHH
T ss_pred C-CC------CCCcccCHHHHHH
Confidence 6 22 4556677765544
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00094 Score=71.12 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=63.3
Q ss_pred CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecC-CCc-cccccCC--CCChHHHH
Q psy16872 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNL-NGS-KLSKRQG--DMSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~-dg~-KLSKR~g--~~sv~~~r 331 (605)
|..+|-+--+.|-...+.++|+-|.|...+--.=.-+.+.+|.. .|.+.|.|+|.+. ||+ ||||+.+ ++.+.
T Consensus 184 g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~--- 260 (373)
T 3vgj_A 184 SQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD--- 260 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT---
T ss_pred HHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC---
Confidence 45566666667777788999999999875433334566778876 5888999999995 995 9999985 45553
Q ss_pred HcCCCHHHHHHHHHHh
Q psy16872 332 NSEFLPNALINFVTNF 347 (605)
Q Consensus 332 ~~G~~PeAl~nfla~l 347 (605)
=.|+.+..-+...
T Consensus 261 ---D~p~~i~~KI~kA 273 (373)
T 3vgj_A 261 ---DSESDVNRKIKKA 273 (373)
T ss_dssp ---CCHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHhC
Confidence 4788888888764
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00073 Score=73.53 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=117.4
Q ss_pred eeEec--CCC-CcCChhhHHHHH-HHHHHHHHcCCeEEEeccCC-----CCC---CCcHHHHHHHHHHHHHcCCCCCCCc
Q psy16872 72 LKHFL--TST-GLLHLGGLRTAL-YNYLFAKSHNGSFILRIEDT-----DQT---RFVPEAVEKLEQDLKWIGVVPDESE 139 (605)
Q Consensus 72 v~~fp--~Pt-G~LHiG~~RtAL-~n~l~Ar~~~G~fiLRiEDT-----D~~---R~~~~~~~~I~~~L~wlGl~~De~p 139 (605)
++-|- .|| |.|||||+-.++ .+| +-+..|..+++-|-|- .+. -.+.+....+..++-.+|++++...
T Consensus 92 ~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~ 170 (451)
T 3foc_A 92 IYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTF 170 (451)
T ss_dssp EEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred eEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Confidence 45665 899 899999999998 788 5666677788888773 111 1233444456666666799876432
Q ss_pred cCCCccCcccccccHH--HHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHH----HHH-
Q psy16872 140 TVGGNYGPYLQSKRLA--LYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQID----EKL- 212 (605)
Q Consensus 140 ~~~g~~gpy~QSer~~--~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~----~~~- 212 (605)
-+.||+-.. .|.+.+-.|- |..|-.++.. .. + +. ..++..+.. +..
T Consensus 171 -------i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~--~~----~----f~---~~is~gef~YPlLQAaD 223 (451)
T 3foc_A 171 -------IFINSQYLSLKNRYRFSCLVD-------RMLPISQLRA--SF----G----FS---NDANVGYAAFPPKQMLP 223 (451)
T ss_dssp -------EEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHH--HH----C----CC---SSSCHHHHTCHHHHHGG
T ss_pred -------EEeCchhhcchhHHHHHHHHH-------hhCCHHHHHh--hc----c----cC---CCCchHHHhhHHHHHHH
Confidence 367887653 3444443332 3334333321 11 1 11 123443321 100
Q ss_pred -----hcCCCceEEEEcCCCc-cceeccccceeeec--C-CCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCC
Q psy16872 213 -----KENSKYCIRFKLTNHT-ESWQDLVYGDISYN--V-FHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEW 283 (605)
Q Consensus 213 -----~~g~~~~iR~k~~~~~-~~~~D~v~G~i~~~--~-~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~ 283 (605)
..|.+++ .||.+. ..=+|.-+ -++.. . +....|.++.+.|-.|.- |-. -.|..-.-++|.-|.|.
T Consensus 224 il~~~~d~~~~~---~vp~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~-~~~~~~~~~~VPvG~DQ 297 (451)
T 3foc_A 224 VYSTYFDGLPFT---RVPLPVGTGNEDAAD-AVSTKKASKKTPKKDAVLSPVHVVEEL-FPD-SKRYQKAMCLIASGIEQ 297 (451)
T ss_dssp GSGGGGTTSGGG---CCBCC--------------------------CCCCHHHHHHHH-CGG-GGGBCCCEEEEEECTTT
T ss_pred HHHhhcCCCCcc---ccccccccccchhhh-hhhhhhccccccchhhhhhhcccchhh-ccc-ccccccccceeeeecch
Confidence 1233332 123220 00001000 01110 0 001123333332211100 000 00111122367789998
Q ss_pred cccHHHHHHHHHHcCCCCCcEEEecceecCCCc--cccccCCC--CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 284 QISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS--KLSKRQGD--MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 284 l~stpkqi~ly~alG~~~P~f~H~plil~~dg~--KLSKR~g~--~sv~~~r~~G~~PeAl~nfla~l 347 (605)
..+--.-.-+.+.||++.|...|.|+|.+.+|. ||||+.++ +.+. =.|+.+..=+...
T Consensus 298 ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~------D~p~~I~kKI~k~ 359 (451)
T 3foc_A 298 DPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLT------DTPAQIKNKINRY 359 (451)
T ss_dssp HHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTT------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeec------CCHHHHHHHHhhh
Confidence 743222223445689988998999999999985 99999975 4442 4788888888774
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00046 Score=74.54 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred cccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-CCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 258 FPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-GWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-G~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
..+|-+--+.|-... +.++++-|.|...|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.|+ +++.
T Consensus 166 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~--- 242 (419)
T 2ts1_A 166 EFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLD--- 242 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSS---
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecC---
Confidence 345555555665556 8999999999987766666677888 877777789999999999999999875 4443
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
+.=.+|..+..++..
T Consensus 243 d~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 243 KEKTSPYEFYQFWIN 257 (419)
T ss_dssp TTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 223578888888864
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00054 Score=73.30 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.|+.||..-. .|.+.++=|-| .|++ ...+....+..++..+||+++... -|+
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ-~~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~kt~-------if~ 113 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQ-HDYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEKAT-------LFI 113 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTT-TTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEE-------EEE
T ss_pred CCCCcchHHHHHHHHHHHHHHH-ccCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhHeE-------EEe
Confidence 8999999999999999986543 35555554433 2222 234455667777788999998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+. .+.+-.| -|..+-.+|+. .+.|... .+.+
T Consensus 114 qS~v~~~-~el~w~l-------~~~~~~~~L~R----------~~~fk~k------------~~~~-------------- 149 (388)
T 3prh_A 114 QSEVPAH-AQAGWMM-------QCVAYIGELER----------MTQFKDK------------SKGN-------------- 149 (388)
T ss_dssp GGGSTHH-HHHHHHH-------HTTSCHHHHHT----------TC-----------------------------------
T ss_pred cccccch-HHHHHHH-------HhhccHHHHHh----------hhhHhHH------------hhcc--------------
Confidence 9987653 2332222 37777665531 0112100 0000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC--CCcEEEe
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT--PPKFAHL 307 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~--~P~f~H~ 307 (605)
|. -+=|..+|=.--+.|-...+.++|.-|+|...+--.=.-+.+.||.. .+.-.+-
T Consensus 150 -------------------~~---~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~ 207 (388)
T 3prh_A 150 -------------------EA---VVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPE 207 (388)
T ss_dssp --------------------C---CBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCE
T ss_pred -------------------CC---CcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccch
Confidence 00 01145556555666777789999999999874322222344455522 1111232
Q ss_pred cce-------ecC-CC-ccccccCC----CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 308 PLL-------LNL-NG-SKLSKRQG----DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 308 pli-------l~~-dg-~KLSKR~g----~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
|+| .+. +| +||||+.. .+.+. =.|+.+..=+..
T Consensus 208 ~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~------D~p~~I~kKI~k 253 (388)
T 3prh_A 208 VKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLL------DEPKQLEKKIKS 253 (388)
T ss_dssp ECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTT------CCHHHHHHHHHT
T ss_pred hhhcccccccccCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHHhh
Confidence 332 343 44 69999983 34443 367777777755
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00062 Score=71.70 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=107.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.|+-+|..-.. +.+.++=|-| .|+ ....+....+..++..+||+++... -|+
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~-------i~~ 84 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDP-QALHEATLDALAICLAVGVDPKKST-------LFV 84 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHTTCCTTTSE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCH-HHHHHHHHHHHHHHHHcCCChhhcE-------EEe
Confidence 89999999999999988853333 3444443333 222 2244555667777888899998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+...-+. .| .|.++.-+|+.+.. | .+...+. +
T Consensus 85 qS~v~~~~el~~-~l-------~~~~~~~~l~R~~~----------~---------k~~~~~~--~-------------- 121 (341)
T 3sz3_A 85 QSHVPEHAQLGW-VL-------NCYTQMGELSRMTQ----------F---------KDKSARY--A-------------- 121 (341)
T ss_dssp GGGCTHHHHHHH-HH-------HTTSCHHHHHTCHH----------H---------HHHHHHH--G--------------
T ss_pred ccchhhhHHHHH-HH-------HhhccHHHHHHHHH----------H---------HHHHhhc--c--------------
Confidence 998765332221 13 37888777653210 0 0000000 0
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC--CC-------
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG--WT------- 300 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG--~~------- 300 (605)
+ . -+=|..+|=.--+.|-...+.++|.-|.|...+--.=.-+.+.|| +.
T Consensus 122 ---~----------~---------~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~ 179 (341)
T 3sz3_A 122 ---N----------D---------VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFT 179 (341)
T ss_dssp ---G----------G---------CCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSC
T ss_pred ---C----------C---------CChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccc
Confidence 0 0 001344555555566667889999999998743222223444454 21
Q ss_pred CCcE-EE--ecceecC-CC-ccccccCC----CCChHHHHHcCCCHHHHHHHHHH
Q psy16872 301 PPKF-AH--LPLLLNL-NG-SKLSKRQG----DMSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 301 ~P~f-~H--~plil~~-dg-~KLSKR~g----~~sv~~~r~~G~~PeAl~nfla~ 346 (605)
.|.- .+ .+.|.+. +| +||||+.. .+.+. =.|+.+..=+..
T Consensus 180 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~~ 228 (341)
T 3sz3_A 180 IPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLL------EDPKSIIKKINK 228 (341)
T ss_dssp CCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTT------CCHHHHHHHHHT
T ss_pred cChhhhccCcccccCCCCCCCccCCCCCCCCCeeecC------CCHHHHHHHhhh
Confidence 2321 11 2445555 57 59999984 34443 367777777765
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=68.92 Aligned_cols=190 Identities=16% Similarity=0.195 Sum_probs=107.7
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC-------CCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED-------TDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYL 149 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED-------TD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~ 149 (605)
.|||.|||||.-.++-+|..- +.+.+.++=|-| .|++ ...+....+..++..+|++++... -|+
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~-------if~ 93 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKST-------IFV 93 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSE-------EEE
T ss_pred CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceE-------EEe
Confidence 899999999999999888532 234455443333 2332 234555667777888999998754 378
Q ss_pred ccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCcc
Q psy16872 150 QSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTE 229 (605)
Q Consensus 150 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~ 229 (605)
||+-.+...-+- - +.|.++-.+|+.+.. | .+ +.....
T Consensus 94 qS~v~~~~el~~-~-------l~~~~~~~~l~R~~~----------~---------k~---~~~~~~------------- 130 (346)
T 3n9i_A 94 QSHVPEHSQLSW-A-------LNCYTYFGELSRMTQ----------F---------KD---KSARYA------------- 130 (346)
T ss_dssp GGGCTHHHHHHH-H-------HHTTSBHHHHHTCHH----------H---------HH---HHHHSG-------------
T ss_pred ccccccchHHHH-H-------HHHHhhHHHHHHHHH----------H---------HH---HHhccC-------------
Confidence 998654332211 1 237777666642210 0 00 000000
Q ss_pred ceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcC------CCCCc
Q psy16872 230 SWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFG------WTPPK 303 (605)
Q Consensus 230 ~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG------~~~P~ 303 (605)
| + -+=|..+|=.--+.|-...+.++|.-|.|...+--.=.-+.+.|| +..|.
T Consensus 131 ---~--------------~-----~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~ 188 (346)
T 3n9i_A 131 ---E--------------N-----INAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPE 188 (346)
T ss_dssp ---G--------------G-----CBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCE
T ss_pred ---C--------------C-----CCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccc
Confidence 0 0 011344555555666667889999999998643222223444455 22333
Q ss_pred EE---EecceecC-CCc-cccccCCC----CChHHHHHcCCCHHHHHHHHHH
Q psy16872 304 FA---HLPLLLNL-NGS-KLSKRQGD----MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 304 f~---H~plil~~-dg~-KLSKR~g~----~sv~~~r~~G~~PeAl~nfla~ 346 (605)
-. |.+.+.+. ||+ ||||+.++ +.+. =.|+.+..=+..
T Consensus 189 ~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~k 234 (346)
T 3n9i_A 189 PFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELL------EDPKSVVKKIKR 234 (346)
T ss_dssp ECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTT------SCHHHHHHHHHT
T ss_pred hhccCCcccCccCCCCccccCCCCCCCCceecCC------CCHHHHHHHHHh
Confidence 11 22455565 775 99999864 4443 367888777765
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.012 Score=67.30 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=63.4
Q ss_pred CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCC-CCcEEEecceecC-CCc-cccccCC--CCChHHHH
Q psy16872 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWT-PPKFAHLPLLLNL-NGS-KLSKRQG--DMSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~-~P~f~H~plil~~-dg~-KLSKR~g--~~sv~~~r 331 (605)
|..+|-+--+.|-...+.++|.-|.|...+--.=.-+.+.+|.. .|...|.|+|.+. ||+ ||||+.+ ++.+.
T Consensus 167 g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~--- 243 (690)
T 3p0j_A 167 AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME--- 243 (690)
T ss_dssp SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT---
T ss_pred hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc---
Confidence 46667666677777788999999999875433334556778876 5788899999998 895 9999986 35553
Q ss_pred HcCCCHHHHHHHHHHh
Q psy16872 332 NSEFLPNALINFVTNF 347 (605)
Q Consensus 332 ~~G~~PeAl~nfla~l 347 (605)
=.|+.+..-+...
T Consensus 244 ---D~p~~i~kKI~~A 256 (690)
T 3p0j_A 244 ---DTEEDVARKIRQA 256 (690)
T ss_dssp ---CCHHHHHHHHHTS
T ss_pred ---CCHHHHHHHHHhC
Confidence 4788888887653
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0062 Score=65.21 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=59.3
Q ss_pred CcccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHc-----------------CCCCCcEEEecceecCCC
Q psy16872 257 GFPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAF-----------------GWTPPKFAHLPLLLNLNG 315 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~al-----------------G~~~P~f~H~plil~~dg 315 (605)
|..+|-+--+.|-... +.++|+-|.|...|--.=+-|.+.+ |+.+|.-.+.|+|.+.+|
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG 291 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG 291 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch
Confidence 3456655556655444 6999999999976544433343332 335566789999999999
Q ss_pred ccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
+||||+.++ +++.+ .=-+|..+..|+..
T Consensus 292 ~KMSKS~~naI~L~d---~~tsp~~i~qki~~ 320 (392)
T 1y42_X 292 AKFGKSAGNAIWLDP---YQTSVFDFYGYFVR 320 (392)
T ss_dssp CBTTBCSSSBCBSST---TTSCHHHHHHHHHT
T ss_pred hhccCCCCCeeeccC---CCCCHHHHHHHHHc
Confidence 999999765 44432 22588888888865
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.021 Score=67.45 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=67.0
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCC--------------CC--------------CcHHHHH
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQ--------------TR--------------FVPEAVE 122 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~--------------~R--------------~~~~~~~ 122 (605)
.-+|+|||.|||||+++.+....+||.+ .|.-++.+-.+|- .+ .+.++++
T Consensus 54 ~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~ 133 (917)
T 1ffy_A 54 DGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIE 133 (917)
T ss_dssp CCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHH
Confidence 3447999999999999999999999964 5766665544441 11 2456788
Q ss_pred HHHHHHHHcCC--CCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 123 KLEQDLKWIGV--VPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 123 ~I~~~L~wlGl--~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
.+.++|+.||+ +||.. |+.. ++...-+....+|.++|.+|+
T Consensus 134 ~~~~~~~rlG~~~Dwd~~---------~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 134 LQKKDFRRLGVRGDFNDP---------YITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHTTTCCSCTTSC---------EETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCeEEccCCC---------eEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 99999999999 58763 4444 233344567779999999997
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.082 Score=61.46 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=65.5
Q ss_pred cCCCCcCChhhHHHHHHHHHHHH--HcCCeEEEeccCCCCC---------------------------------------
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAK--SHNGSFILRIEDTDQT--------------------------------------- 114 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar--~~~G~fiLRiEDTD~~--------------------------------------- 114 (605)
|+|||.|||||+|+++....+|| ...|.-++++=.+|.-
T Consensus 43 Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 122 (810)
T 1wkb_A 43 PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122 (810)
T ss_dssp CBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSH
T ss_pred CCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 59999999999999999999999 4569888886433220
Q ss_pred -CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccc----cHHHHHHHHHHHHHCCCEee
Q psy16872 115 -RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK----RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 115 -R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe----r~~~Y~~~a~~Li~~G~AY~ 172 (605)
..+..+.+.+.++|++||+..|=. .+|+.++ +.+.-+....+|.++|.+|+
T Consensus 123 ~~~~~~~~~~~~~~~~~lgi~~Dw~-------~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 123 INIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGG-------GCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCeEEecC-------CceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 112345578999999999877621 1355555 33344667789999999986
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.088 Score=62.50 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=64.4
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCC--------------------------------------
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTD-------------------------------------- 112 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD-------------------------------------- 112 (605)
.-+|+|||.||+||+++.+....+||.+ .|.-+|+.=..|
T Consensus 40 ~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 119 (967)
T 1wz2_A 40 VAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTF 119 (967)
T ss_dssp ECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGG
T ss_pred eCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHH
Confidence 3447999999999999999999999964 576666542221
Q ss_pred --CCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccc----cHHHHHHHHHHHHHCCCEee
Q psy16872 113 --QTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSK----RLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 113 --~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSe----r~~~Y~~~a~~Li~~G~AY~ 172 (605)
+...+..+.+.+.+.|+.||+..|=. .+|...+ +...-+....+|.++|++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~-------r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 120 EDPINIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp GSHHHHHHHHHHHHHHHHHTTTCCCCTT-------SCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceEecC-------CCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 11123455678999999999854421 1355554 33344566778999999997
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.2 Score=58.89 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=64.5
Q ss_pred hcCCcceEEcCCCCcccH-----HHHHHHHHHcCC---CCC--cEEEeccee-------cCCCc----------------
Q psy16872 270 HHMNISHVLRGVEWQIST-----TKHILIYKAFGW---TPP--KFAHLPLLL-------NLNGS---------------- 316 (605)
Q Consensus 270 ~~m~ITHVIRG~d~l~st-----pkqi~ly~alG~---~~P--~f~H~plil-------~~dg~---------------- 316 (605)
..|-++.-|-|.||...- -.+..|+ .+|. ..| ...+.+|++ +.+|+
T Consensus 540 ~~~PvD~yigG~EHailHllyaRf~~~~L~-~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~ 618 (880)
T 4arc_A 540 YWLPVDIYIGGIEHAIMHLLYFRFFHKLMR-DAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEK 618 (880)
T ss_dssp HHCSEEEEECCGGGTTTHHHHHHHHHHHHH-HTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTT
T ss_pred ccCCceEeecchhhHHHHHHHHHHHHHHHH-HhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccc
Confidence 457788888888885422 1222232 3453 456 345567876 67777
Q ss_pred --------------------cccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 317 --------------------KLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 317 --------------------KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
||||+.|+ +++.++.++ |.++|+|-|++..+ .+ +.+..||.+.+..
T Consensus 619 ~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~-~~------~~dl~~s~~~ie~ 685 (880)
T 4arc_A 619 GRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFAS-PA------DMTLEWQESGVEG 685 (880)
T ss_dssp CCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS-CT------TSCEECCHHHHHH
T ss_pred cccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcC-CC------CCCcccCHHHHHH
Confidence 99999998 689999998 99999999999886 22 4556677776654
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.052 Score=57.32 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=54.0
Q ss_pred CcccchhhhhhhhhcC----CcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC-CChHHHH
Q psy16872 257 GFPTYHFANVVDDHHM----NISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD-MSVEAIR 331 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m----~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~-~sv~~~r 331 (605)
|..+|-.--+.|-... +.++|+-|.|...+--.=.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 190 g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 267 (356)
T 2pid_A 190 AEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR-- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC--
Confidence 4556665566666666 9999999999987665556677888887777789999999999999999764 45542
Q ss_pred HcCCCHHHHHHHHHH
Q psy16872 332 NSEFLPNALINFVTN 346 (605)
Q Consensus 332 ~~G~~PeAl~nfla~ 346 (605)
.=..|+.+..++..
T Consensus 268 -~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 268 -DKTSPFELYQFFVR 281 (356)
T ss_dssp -TTSCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHc
Confidence 22478888888864
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.47 Score=55.75 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=39.0
Q ss_pred ccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHH
Q psy16872 316 SKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 316 ~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+||||+.|+ ++..++.++ |.++|+|.|++..+ .+ ..+..||.+.+..
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~-~~------~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAA-PP------ENEMVWTEEGVQG 683 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHS-CT------TSCEEECHHHHHH
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccC-CC------CCCceeCHHHHHH
Confidence 899999998 689999988 99999999999876 22 4566788887655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d1j09a2 | 305 | c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS | 9e-75 | |
| d1gtra2 | 331 | c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (Gln | 1e-54 | |
| d1nzja_ | 286 | c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB | 8e-53 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 6e-19 | |
| d1j09a1 | 163 | a.97.1.1 (A:306-468) C-terminal domain of glutamyl | 2e-13 | |
| d1irxa1 | 204 | a.97.1.2 (A:320-523) C-terminal domain of class I | 2e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 |
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 239 bits (610), Expect = 9e-75
Identities = 118/294 (40%), Positives = 178/294 (60%), Gaps = 13/294 (4%)
Query: 79 TGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDES 138
TG H+G AL+NY +A+ + G FI+RIEDTD+ R+VP A E++ LKW+G+ DE
Sbjct: 11 TGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEG 70
Query: 139 ETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDN 198
VGG +GPY QS+RL LYQK + LL G AY+ F + L IRK+ YD
Sbjct: 71 PDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDG 124
Query: 199 KCRNLTQEQIDEKLKENSKYCIRFKLTNH-TESWQDLVYGDISYNVFHNEGDPVIIKSDG 257
+ RN+ E+ +E+ + + IR K+ T +D + G + Y+ D V++KSDG
Sbjct: 125 RARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDN-QEIPDVVLLKSDG 183
Query: 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSK 317
+PTYH ANVVDDH M ++ V+R EW +ST H+L+Y+AFGW P+F H+PLL N + +K
Sbjct: 184 YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTK 243
Query: 318 LSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEK 371
+SKR+ S++ + FLP AL N++ G D + ++F++++ ++
Sbjct: 244 ISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-----EIFTLEEFIQA 292
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Score = 186 bits (473), Expect = 1e-54
Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 77/371 (20%)
Query: 23 HSNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLL 82
H+ V RF P P G L
Sbjct: 17 HTTVHTRFPPEPN--------------------------------------------GYL 32
Query: 83 HLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVG 142
H+G ++ N+ A+ + G LR +DT+ + E VE ++ D++W+G
Sbjct: 33 HIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHW------- 85
Query: 143 GNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRN 202
+ S L++ G AY + ++ R + G Y ++
Sbjct: 86 -SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVE 144
Query: 203 LTQEQID---EKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFP 259
+ E K C+R K+ S ++ + Y + E K +P
Sbjct: 145 ENLALFEKMRAGGFEEGKACLRAKI--DMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYP 202
Query: 260 TYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGW----------------TPPK 303
Y F + + D I+H L +E+Q + + + T
Sbjct: 203 MYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMS 262
Query: 304 FAHLPLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLF 363
L LL+ + ++ +R + ++ F G D + ++
Sbjct: 263 KRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQD----NTIEMA 318
Query: 364 SMKDLVEKVCN 374
S++ + + N
Sbjct: 319 SLESCIREDLN 329
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Score = 180 bits (457), Expect = 8e-53
Identities = 79/317 (24%), Positives = 123/317 (38%), Gaps = 69/317 (21%)
Query: 24 SNVRVRFAPSPTATFFYSPYPVGRIFMIYNRCEKLWITEGLRSSIPLKLKHFLTSTGLLH 83
+ RFAPSP+ G LH
Sbjct: 1 TQYIGRFAPSPS--------------------------------------------GELH 16
Query: 84 LGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGG 143
G L AL +YL A++ G +++RIED D R VP A E + + L+ G+
Sbjct: 17 FGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHW-------- 68
Query: 144 NYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNL 203
+ QS+R Y++ + L G +Y C C+ +R+ I V +
Sbjct: 69 DGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNA-- 126
Query: 204 TQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHF 263
+R + + + D + G I + D +I + DG Y+
Sbjct: 127 ---------------AVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNL 171
Query: 264 ANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQG 323
A VVDDH ++ ++RG + T + I +Y+ FGW P + HLPL LN G+KLSK+
Sbjct: 172 AVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH 231
Query: 324 DMSVEAIRNSEFLPNAL 340
++ L AL
Sbjct: 232 APALPKGDPRPVLIAAL 248
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 86.0 bits (211), Expect = 6e-19
Identities = 34/258 (13%), Positives = 80/258 (31%), Gaps = 10/258 (3%)
Query: 77 TSTGLLHLGGLRTA-----LYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWI 131
T +G +H+G R + + L K + I +D D+ R VP V + +D +
Sbjct: 27 TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGM 86
Query: 132 GVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSG 191
+ ++ +++ + A + + IR K
Sbjct: 87 PISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRD 146
Query: 192 LVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPV 251
+ + NK R + ++ + + D + +EG
Sbjct: 147 KIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVD 206
Query: 252 IIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHIL----IYKAFGWTPPK-FAH 306
I + + + H + G + ++ + + I + +G P +
Sbjct: 207 IRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMY 266
Query: 307 LPLLLNLNGSKLSKRQGD 324
+ + K+S +G+
Sbjct: 267 EFVGIKGQKGKMSGSKGN 284
|
| >d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 163 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: An anticodon-binding domain of class I aminoacyl-tRNA synthetases superfamily: An anticodon-binding domain of class I aminoacyl-tRNA synthetases family: C-terminal domain of glutamyl-tRNA synthetase (GluRS) domain: C-terminal domain of glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 66.5 bits (161), Expect = 2e-13
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 413 DLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWAS 472
DL L N IR V+S +E++ + + + L +
Sbjct: 1 DLEKLRWMNGKYIREVLS----------LEEVAERVKPFLREAGLSWES-------EAYL 43
Query: 473 ERIFKLQDLVGKDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFT 532
R +L K +PV + L L +L+ L PRL+ + +T
Sbjct: 44 RRAVELMRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWT 103
Query: 533 RDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLRDVL 591
+L LR F+ E+GV+ + LR +L+G + P + E++ +L KE +RRL L
Sbjct: 104 EAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERAL 162
|
| >d1irxa1 a.97.1.2 (A:320-523) C-terminal domain of class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 204 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: An anticodon-binding domain of class I aminoacyl-tRNA synthetases superfamily: An anticodon-binding domain of class I aminoacyl-tRNA synthetases family: C-terminal domain of class I lysyl-tRNA synthetase domain: C-terminal domain of class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.6 bits (133), Expect = 2e-09
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 484 KDFAFIWVKPSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREF 543
+++ + ++ + + + + L+ + F+ + L E
Sbjct: 99 RNWVKKYAPEDVKF--SILEKPPEVEVSEDVREAMNEVAEWLENHEEFSVEEFNNILFEV 156
Query: 544 STEQGVEYSTFMKLLRTSLSGLKQGPSVGEMMEILTKENTIRRLR 588
+ +G+ + L G ++GP + + L + I+RLR
Sbjct: 157 AKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDRSFVIKRLR 201
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 100.0 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 100.0 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 100.0 | |
| d1j09a1 | 163 | C-terminal domain of glutamyl-tRNA synthetase (Glu | 99.96 | |
| d1irxa1 | 204 | C-terminal domain of class I lysyl-tRNA synthetase | 99.72 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.69 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.54 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.52 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.48 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.45 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.24 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.16 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.05 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.01 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 98.99 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 97.73 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 97.47 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 97.0 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 96.94 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 96.79 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 96.5 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 92.19 |
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.2e-89 Score=711.71 Aligned_cols=303 Identities=39% Similarity=0.716 Sum_probs=288.7
Q ss_pred CceeEe-cCCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcc
Q psy16872 70 LKLKHF-LTSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPY 148 (605)
Q Consensus 70 ~~v~~f-p~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy 148 (605)
++|||| |+|||+||||||||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||++|..+|++++|
T Consensus 1 ~vvtRfaPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRidDtD~~R~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~ 80 (305)
T d1j09a2 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (305)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CeEEecCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCchHHHHHHHHHHHHHhcCcccCCcCCCCCcce
Confidence 468999 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCC-C
Q psy16872 149 LQSKRLALYQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTN-H 227 (605)
Q Consensus 149 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~-~ 227 (605)
+||+|+++|++++++|+++|+||+|+||+++++..|... +.|+++|++++.++..+++..|.++++||+++. +
T Consensus 81 ~qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~ 154 (305)
T d1j09a2 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK------GGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPG 154 (305)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHH------SSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSC
T ss_pred eeecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhc------cCCCCccccchhhhHHHHhhcCCcceEEEeccccC
Confidence 999999999999999999999999999999998776543 469999999999999999999999999999986 4
Q ss_pred ccceeccccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEe
Q psy16872 228 TESWQDLVYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHL 307 (605)
Q Consensus 228 ~~~~~D~v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~ 307 (605)
...|.|.++|.+.+.+ ...+||||+|+||+|||||||||||++|||||||||+||++|||+|++|+++|||+.|.|.|+
T Consensus 155 ~~~~~d~i~~~~~~~~-~~~~D~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~ 233 (305)
T d1j09a2 155 TTEVKDELRGVVVYDN-QEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHM 233 (305)
T ss_dssp EEEEEETTTEEEEEEG-GGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred Cccccchhhceeeecc-ccCCCeEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhcCCCCceeee
Confidence 6789999999999884 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCccccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhccccccccccccccc
Q psy16872 308 PLLLNLNGSKLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKE 387 (605)
Q Consensus 308 plil~~dg~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~ 387 (605)
|++++.+|+|||||+++++|++||++||+||||+|||+++||+. .+..+++|++|+++
T Consensus 234 ~l~~~~~g~KLSKr~~~~tl~~lr~~G~~peai~~~l~~lG~~~-----~~~~~~~sl~e~i~----------------- 291 (305)
T d1j09a2 234 PLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSM-----PDGREIFTLEEFIQ----------------- 291 (305)
T ss_dssp CCCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCC-----TTCCSCCCHHHHHH-----------------
T ss_pred cccccCccccccccCCccCHHHHHHcCCCHHHHHHHHHHhCCCC-----CCCcCcCCHHHHHH-----------------
Confidence 99999999999999999999999999999999999999999887 46788999999999
Q ss_pred ccccccccccccccccccccCCCCC
Q psy16872 388 FGIFWFQTFFNEFDLQLVNENSCKV 412 (605)
Q Consensus 388 ~~~~~~~~~~~~F~~~~i~~~~a~f 412 (605)
.|++++|+++|++|
T Consensus 292 -----------~f~~~~v~k~~~~f 305 (305)
T d1j09a2 292 -----------AFTWERVSLGGPVF 305 (305)
T ss_dssp -----------HCCGGGCCCSCCBC
T ss_pred -----------hCCHhhCCCCCCCC
Confidence 99999999999987
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-85 Score=684.56 Aligned_cols=279 Identities=19% Similarity=0.243 Sum_probs=248.1
Q ss_pred CcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHHHHH
Q psy16872 80 GLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLALYQK 159 (605)
Q Consensus 80 G~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~ 159 (605)
|+|||||||||||||++||++||+|||||||||++|++++|++.|+++|+||||+||++ |++||+|+++|++
T Consensus 30 G~LHiG~~rtal~n~l~Ak~~~G~fiLRIEDtD~~R~~~~~~~~I~~dL~WLGl~wD~~--------~~~QS~r~~~Y~~ 101 (331)
T d1gtra2 30 GYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGN--------VRYSSDYFDQLHA 101 (331)
T ss_dssp SCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSS--------CEEGGGGHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCcccchHHHHHHHHHHHHhcccccc--------ceecchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 6899999999999
Q ss_pred HHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhc---CCCceEEEEcCCC--ccceecc
Q psy16872 160 EVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKE---NSKYCIRFKLTNH--TESWQDL 234 (605)
Q Consensus 160 ~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~---g~~~~iR~k~~~~--~~~~~D~ 234 (605)
++++|+++|+||+||||++|+++.|+.+.+.|.++.|++.|+..+.+...+.... ....++|++++.. ...++|.
T Consensus 102 ~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~d~ 181 (331)
T d1gtra2 102 YAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDP 181 (331)
T ss_dssp HHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHHHHTCSCTTSCEEEECSCTTCSSGGGSSC
T ss_pred HHHhhhhcCCcccccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHHhhccccCCceEEEEecccCCCceeEEcc
Confidence 9999999999999999999999888766666666666666665555444333332 2356899999843 5789999
Q ss_pred ccceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCC
Q psy16872 235 VYGDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLN 314 (605)
Q Consensus 235 v~G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~d 314 (605)
+.|.+.+. .+|+|+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|.|+|++++.+
T Consensus 182 ~~~~~~~~----~~d~v~~r~dg~ptY~lA~vVDD~~~gIThViRG~D~l~~T~~q~~l~~~Lg~~~p~~~h~~~~l~~~ 257 (331)
T d1gtra2 182 VLYRIKFA----EHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLE 257 (331)
T ss_dssp EEEEECCC----CBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHSCCSCCCEEEEECCCCBT
T ss_pred ceeeeccC----CCcccccccccccHHhhhHHHhhhhhcccceecccccccccHHHHHHHHhccCCCCcceeeccccccc
Confidence 99998765 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCC----------------CCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcc
Q psy16872 315 GSKLSKRQG----------------DMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCN 374 (605)
Q Consensus 315 g~KLSKR~g----------------~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~ 374 (605)
|+|||||++ ..||.+||++||+|+||+|||++||||.. ....|+||++++++.+||
T Consensus 258 g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~nyla~LGws~~----d~~~e~~sLe~~~r~~ln 329 (331)
T d1gtra2 258 YTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQ----DNTIEMASLESCIREDLN 329 (331)
T ss_dssp TSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSS----CCCBCHHHHHHHHHHHHH
T ss_pred cchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHHHHHhCCCCC----CCcccHHhHHHHHHHhcc
Confidence 999999964 35899999999999999999999999873 233599999999985554
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-82 Score=651.61 Aligned_cols=277 Identities=30% Similarity=0.506 Sum_probs=236.8
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccccccHHH
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQSKRLAL 156 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~QSer~~~ 156 (605)
+|||+||||||||||+||++||++||+|||||||||++|++++|++.|+++|+||||+||++ ||+||+|+++
T Consensus 10 sPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlgl~~d~~--------~~~QS~r~~~ 81 (286)
T d1nzja_ 10 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD--------VLWQSQRHDA 81 (286)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC--------CEEGGGCHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCCHHHHHHHHHHHHHhhhccccc--------cchhHHHHHH
Confidence 33399999999999999999999999999999999999999999999999999999999975 6999999999
Q ss_pred HHHHHHHHHHCCCEeeeCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhcCCCceEEEEcCCCccceecccc
Q psy16872 157 YQKEVQTLLHNGSAYKCFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKENSKYCIRFKLTNHTESWQDLVY 236 (605)
Q Consensus 157 Y~~~a~~Li~~G~AY~Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~ 236 (605)
|++++++|+++|+||+||||++++++.| ..+.+.|+.+... ....++|++++.....+.|.++
T Consensus 82 Y~~~~~~L~~~g~aY~C~ct~~~l~~~~---------~~~~~~~~~~~~~--------~~~~~~r~~~~~~~~~~~~~~~ 144 (286)
T d1nzja_ 82 YREALAWLHEQGLSYYCTCTRARIQSIG---------GIYDGHCRVLHHG--------PDNAAVRIRQQHPVTQFTDQLR 144 (286)
T ss_dssp HHHHHHHHHHTTCEEEECCCHHHHHHTT---------SSCCCTTTTTCCC--------STTCEEEECCSSCCCEEEETTT
T ss_pred HHHHHHHHHHcCCcccccccHHHHHhhc---------cccccccccccch--------hhhhhhhhcccccccceeeeee
Confidence 9999999999999999999999986543 2355666665532 3456889998887888999999
Q ss_pred ceeeecCCCCCCCcEEEecCCcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc
Q psy16872 237 GDISYNVFHNEGDPVIIKSDGFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS 316 (605)
Q Consensus 237 G~i~~~~~~~~~D~Vi~ksDG~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~ 316 (605)
|.+.++.....+||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+||++|.+|+
T Consensus 145 ~~~~~~~~~~~~D~vi~R~dg~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~L~~~lg~~~P~y~H~pli~~~~g~ 224 (286)
T d1nzja_ 145 GIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGA 224 (286)
T ss_dssp EEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC----
T ss_pred eeeeeccccccccccccCCCCCeeeeehhhhcccccccceecccccccchHHHHHHHHHhhCCCccceeecceEEccCCc
Confidence 99887766567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHHHHhcccccccccccccccccccccccc
Q psy16872 317 KLSKRQGDMSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLVEKVCNNATYNRIKPTIKEFGIFWFQTF 396 (605)
Q Consensus 317 KLSKR~g~~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (605)
|||||+++.+|+ .|+.|++++|+|+++||+. ....+++|++|+++++++
T Consensus 225 KLSKr~~~~~i~----~~~~~~~~~~~L~~lG~~~-----~~~~~~~s~~e~l~~~i~---------------------- 273 (286)
T d1nzja_ 225 KLSKQNHAPALP----KGDPRPVLIAALQFLGQQA-----EAHWQDFSVEQILQSAVK---------------------- 273 (286)
T ss_dssp ---------CCC----SSCCHHHHHHHHHHTTCCC-----CSCGGGSCHHHHHHHHHH----------------------
T ss_pred ccccccCccchh----cCCccHHHHHHHHHhCCCC-----ccccccCCHHHHHHHHHh----------------------
Confidence 999999999984 7999999999999999876 356689999999664333
Q ss_pred cccccccccccCCCC
Q psy16872 397 FNEFDLQLVNENSCK 411 (605)
Q Consensus 397 ~~~F~~~~i~~~~a~ 411 (605)
.|++++|+++|++
T Consensus 274 --~f~l~~i~ks~ai 286 (286)
T d1nzja_ 274 --NWRLTAVPESAIV 286 (286)
T ss_dssp --TCCGGGSCCCSBC
T ss_pred --ccChhhCCCCCCC
Confidence 8999999999985
|
| >d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: An anticodon-binding domain of class I aminoacyl-tRNA synthetases superfamily: An anticodon-binding domain of class I aminoacyl-tRNA synthetases family: C-terminal domain of glutamyl-tRNA synthetase (GluRS) domain: C-terminal domain of glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=9.7e-29 Score=230.83 Aligned_cols=163 Identities=26% Similarity=0.385 Sum_probs=136.3
Q ss_pred CchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccchHhhhhhhhhccccC
Q psy16872 413 DLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKLQDLVGKDFAFIWVK 492 (605)
Q Consensus 413 d~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l~dl~~~~~~ff~~~ 492 (605)
|.+||.|+|++||++..+.+ ++++.+++++.+.. ....+++|+.+++.++++|+.++.|+.+. ..|||..
T Consensus 1 D~~KL~w~N~~yik~~~~~~------~l~~~l~~~l~~~~---~~~~~~~~~~~ii~l~k~r~~~l~di~~~-~~~~f~~ 70 (163)
T d1j09a1 1 DLEKLRWMNGKYIREVLSLE------EVAERVKPFLREAG---LSWESEAYLRRAVELMRPRFDTLKEFPEK-ARYLFTE 70 (163)
T ss_dssp CHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHHTT---CCCSCHHHHHHHHHHHGGGCSSTTHHHHH-SGGGTCS
T ss_pred CHHHHHHHHHHHHccCCCHH------HHHHHHHHHHHHcC---CchhhHHHHHHHHHHHHHHhHHHHHHHHh-hhhcccc
Confidence 78999999999999753332 58888888887542 23457889999999999999999999998 7888877
Q ss_pred CCcCccCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCCHH
Q psy16872 493 PSIEHLSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKLLRTSLSGLKQGPSVG 572 (605)
Q Consensus 493 p~~~~~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~pLRiALTG~~~GP~L~ 572 (605)
|...... ..........+|.+++..+++.++|+.++|++.++++++++|+|++++|+|||+||||+.+||+|+
T Consensus 71 ~~~~~~~-------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~ik~~~v~~plR~altG~~~gP~l~ 143 (163)
T d1j09a1 71 DYPVSEK-------AQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLF 143 (163)
T ss_dssp CCCCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSCSCCSCHH
T ss_pred cchhHHH-------HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhCCCccccccchHhhhcCCCCCCCHH
Confidence 7432211 112234566677788888877788999999999999999999999999999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHH
Q psy16872 573 EMMEILTKENTIRRLRDVLE 592 (605)
Q Consensus 573 eim~lLGkee~l~RL~~al~ 592 (605)
++|.+||+++|++||++|++
T Consensus 144 ~~i~llGk~~~l~RL~~ala 163 (163)
T d1j09a1 144 EILALLGKERALRRLERALA 163 (163)
T ss_dssp HHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHhC
Confidence 99999999999999999974
|
| >d1irxa1 a.97.1.2 (A:320-523) C-terminal domain of class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: An anticodon-binding domain of class I aminoacyl-tRNA synthetases superfamily: An anticodon-binding domain of class I aminoacyl-tRNA synthetases family: C-terminal domain of class I lysyl-tRNA synthetase domain: C-terminal domain of class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=1.2e-17 Score=160.25 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=107.2
Q ss_pred cccccccccCCCCCCchhhhhhhHHHHHhhccCCchHHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHhhccccch
Q psy16872 399 EFDLQLVNENSCKVDLTNLNEFNRAEIRRVMSTGTQEEIRSLVEKLKQHIVNEFPNSSLQIDDDYLNYVLCWASERIFKL 478 (605)
Q Consensus 399 ~F~~~~i~~~~a~fd~~KL~~~N~~~i~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~vl~l~~~ri~~l 478 (605)
.+.++...++++.|++.+|.++|+ |+... + .+++..+..... ........+.+++...+..+++.+.
T Consensus 37 l~~~~~~~~~~~~~~f~~l~~l~q--i~~~~-~------~~~~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~-- 103 (204)
T d1irxa1 37 LSMPKKPERLVAQAPFRFLAVLVQ--LPHLT-E------EDIINVLIKQGH--IPRDLSKEDVERVKLRINLARNWVK-- 103 (204)
T ss_dssp HHCSSCCCCCCCCCCHHHHHHHTT--CTTCC-H------HHHHHHHHHTTS--SCSSCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHccCCcccCCCCCCHHHHHHHHh--hcCCC-H------HHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHH--
Confidence 666777778899999999999986 55432 2 135554443211 0111111112233333333333222
Q ss_pred HhhhhhhhhccccCCCcCc-cCCCCccchhhHHHHHHHHHHHhhhhhhccCCCCChhhHHHHHHHHHHHhCCChhhHHHH
Q psy16872 479 QDLVGKDFAFIWVKPSIEH-LSQHPVESYGKVMLNLTLGILEHLIPRLQTCDPFTRDSLATPLREFSTEQGVEYSTFMKL 557 (605)
Q Consensus 479 ~dl~~~~~~ff~~~p~~~~-~~~~~~~~~~~~~~~~~l~lL~~~l~~L~~~e~~~~e~i~~~lk~~~~e~giK~k~lf~p 557 (605)
++.. .+..+.... .....++ ....++|.++++.|+..++|+.++|+++++++++++|+|++++|+|
T Consensus 104 -~~~~-----~~~~~~~~~~~~~~~~~-------~~~k~~L~~l~~~L~~~~~~~~e~i~~~i~~~~k~~~~k~k~~f~~ 170 (204)
T d1irxa1 104 -KYAP-----EDVKFSILEKPPEVEVS-------EDVREAMNEVAEWLENHEEFSVEEFNNILFEVAKRRGISSREWFST 170 (204)
T ss_dssp -HTSC-----GGGCCCCCSSCCCCCCC-------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTCBHHHHHHH
T ss_pred -hccc-----hhhhhhhhhhhhhhhcC-------HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 2221 111111111 1111121 2345566667777776678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHH
Q psy16872 558 LRTSLSGLKQGPSVGEMMEILTKENTIRRLRD 589 (605)
Q Consensus 558 LRiALTG~~~GP~L~eim~lLGkee~l~RL~~ 589 (605)
||+||||+.+||+|+++|.+|||++|++||++
T Consensus 171 lr~al~G~~~GP~l~~~l~~lGke~~l~RL~r 202 (204)
T d1irxa1 171 LYRLFIGKERGPRLASFLASLDRSFVIKRLRL 202 (204)
T ss_dssp HHHHHHSSSSCSCHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCHHHHHHHhCHHHHHHHHcc
Confidence 99999999999999999999999999999985
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=6.9e-19 Score=174.23 Aligned_cols=250 Identities=15% Similarity=0.076 Sum_probs=120.6
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH-----cCCeEEEeccCCCCCCCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS-----HNGSFILRIEDTDQTRFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~-----~~G~fiLRiEDTD~~R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
|+|||+|||||||+|+..+.+||- +++.|+.+++|+++.+.......... .++.+-..++.... .....
T Consensus 26 ~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~ 99 (317)
T d1irxa2 26 ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW--KDYLGMPISEVPDP----WGCHE 99 (317)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG--GGGTTSBGGGSCCT----TSSSS
T ss_pred CCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHHhhhhhH--HHhccCcccccccc----ccccc
Confidence 588999999999999999888874 34589999999999876543322222 12222222221111 01122
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHHH------HHHHHHhCCCCCCCCCcCcCCCHHHHHHHHhc-C------CC
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLNL------IRKDAVKSGLVPKYDNKCRNLTQEQIDEKLKE-N------SK 217 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~~------~r~~~~~~~~~~~Y~~~cr~ls~~e~~~~~~~-g------~~ 217 (605)
+.........-..+.+.+..|.+.+..+.... ...... .|...+.. -...+... . ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~ 169 (317)
T d1irxa2 100 SYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFE------KRDKIMEI----LNKYREIAKQPPLPENWW 169 (317)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHH------THHHHHHH----HHHHHHHTTCCCCCTTCC
T ss_pred ccchhhhhHHhhHHHHhccccchhhHHHHHHHHHHHHHHHHHHh------hhhhhccc----ccceeeeecccccccccc
Confidence 33333344444455566777765543332211 000000 00000000 00000000 0 00
Q ss_pred ceEEEEcCCCc---cceeccccceeeecCCCCCCCcEEEec-CCcccchhhh-------hhhhhcCCcceEEcCCCCccc
Q psy16872 218 YCIRFKLTNHT---ESWQDLVYGDISYNVFHNEGDPVIIKS-DGFPTYHFAN-------VVDDHHMNISHVLRGVEWQIS 286 (605)
Q Consensus 218 ~~iR~k~~~~~---~~~~D~v~G~i~~~~~~~~~D~Vi~ks-DG~PtY~fA~-------vVDD~~m~ITHVIRG~d~l~s 286 (605)
........... ....+...+..... .......+..+. ++.+.|...+ .++.|.+|..|++ .|...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~---~~~~~ 245 (317)
T d1irxa2 170 PAMVYCPEHRREAEIIEWDGGWKVKYKC-PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLV---AGSSY 245 (317)
T ss_dssp SEEEECTTTCCEECEEEECSSSCEEECC-SSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHS---TTSHH
T ss_pred ccchhhhccccccccccccccccceeee-cccccccccccccCCcccccccchhhhccCceeEEEecceecc---cchhh
Confidence 01111111111 11111111111111 111112222222 3334444333 3445555555544 46667
Q ss_pred HHHHHHHHHHcCCCCCcEEEecc-eecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHH
Q psy16872 287 TTKHILIYKAFGWTPPKFAHLPL-LLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTN 346 (605)
Q Consensus 287 tpkqi~ly~alG~~~P~f~H~pl-il~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~ 346 (605)
++.+..++.++|+.+|.+.|+++ ++|.+|.|||||+|. ++++++.+. +.|+++|.|++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~-~~~d~~Ry~~l~ 306 (317)
T d1irxa2 246 DTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYAR 306 (317)
T ss_dssp HHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHS
T ss_pred hHhhhhhhhhcCCCCcEEEEEEEEEECCccccccCCCCccccHHHHHHH-CCHHHHHHHhcC
Confidence 78888999999999998767664 467778899999995 799999985 999999988864
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=5.4e-14 Score=143.07 Aligned_cols=257 Identities=16% Similarity=0.231 Sum_probs=144.7
Q ss_pred CceeEe---cCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCCCC-------------CcHHHHHHHHHHH
Q psy16872 70 LKLKHF---LTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQTR-------------FVPEAVEKLEQDL 128 (605)
Q Consensus 70 ~~v~~f---p~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~~R-------------~~~~~~~~I~~~L 128 (605)
.++..| |||||.+||||+|+|+....+||-. ...|+--++|-+++- ....+.+...+++
T Consensus 21 ~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~~ 100 (315)
T d1li5a2 21 GEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (315)
T ss_dssp TEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhhH
Confidence 456666 6999999999999999999999973 345555555555421 1345556678889
Q ss_pred HHcCCCCCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee----eCCCHHHHHHHHHHHHhCCCCCCCCCcCcCCC
Q psy16872 129 KWIGVVPDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK----CFCSDSRLNLIRKDAVKSGLVPKYDNKCRNLT 204 (605)
Q Consensus 129 ~wlGl~~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~----Cfcs~e~l~~~r~~~~~~~~~~~Y~~~cr~ls 204 (605)
+-+++..+... + ..++..+.+.+..++|..+|.+|. |.|..... .+.|. .+....
T Consensus 101 ~~~~i~~~~~~-------~-~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~ 159 (315)
T d1li5a2 101 DALNILRPDME-------P-RATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT------------DPTYG-VLSRQD 159 (315)
T ss_dssp HHTTCCCCSBC-------C-BGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG------------CTTTT-TTTTC-
T ss_pred HhcCCCCCcEE-------E-ecchhhhhhhhHHHHhhccCceeccccceEEeeccc------------ccccC-cccccc
Confidence 99999765432 1 456788889999999999999985 21111000 01111 111100
Q ss_pred HHHHHHHHhcCCCceEEEEcCCCccceeccccceeeecCCCCCCCcE--EEecCCcccchhhhhh--hhhc-CCcceEEc
Q psy16872 205 QEQIDEKLKENSKYCIRFKLTNHTESWQDLVYGDISYNVFHNEGDPV--IIKSDGFPTYHFANVV--DDHH-MNISHVLR 279 (605)
Q Consensus 205 ~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~~D~V--i~ksDG~PtY~fA~vV--DD~~-m~ITHVIR 279 (605)
..+. ..|. +...........|.+..+. ...++.. .-..++.|+|+.+++- .|++ ..++-.+-
T Consensus 160 ~~~~----~~~~----~~~~~~~~~~~~~~~~~K~-----~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~ 226 (315)
T d1li5a2 160 LDQL----QAGA----RVDVVDDKRNPMDFVLWKM-----SKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGG 226 (315)
T ss_dssp -----------------------CCSTTCEEEEEE-----CCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEEC
T ss_pred cccc----ccCC----cccccccccChhhhhcccc-----CccCCceeccCCceecccccchhhhHHHHHcCCccccccc
Confidence 0000 0010 0000000000001111000 0011111 1112356777655543 3444 55666667
Q ss_pred CCCCcccHHHHH-HHHHHc-CCCC-CcEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCC
Q psy16872 280 GVEWQISTTKHI-LIYKAF-GWTP-PKFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQ 355 (605)
Q Consensus 280 G~d~l~stpkqi-~ly~al-G~~~-P~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~ 355 (605)
|.|+..--..+. ....+. +... +.+.|..++ ..+|+|||||.|+ ++++++.+. |.|+++|.|++.- ++
T Consensus 227 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G~KMSKs~Gn~V~~~dlle~-~g~D~lRy~lls~--~~---- 298 (315)
T d1li5a2 227 GSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSG--HY---- 298 (315)
T ss_dssp BGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCCE-EETTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSS--CT----
T ss_pred ccccccccccccchhhhcccccccccEEEEEEEE-ecCCcEecCcCCCcccHHHHHHh-CCHHHHHHHHHcC--CC----
Confidence 777665333322 111222 2223 357887764 4588999999998 799999985 9999999999752 23
Q ss_pred CCCccccCCHHHHHH
Q psy16872 356 RTSKSQLFSMKDLVE 370 (605)
Q Consensus 356 ~~~~~e~~s~eeli~ 370 (605)
+.+..||++.|.+
T Consensus 299 --~s~ldFs~e~l~~ 311 (315)
T d1li5a2 299 --RSQLNYSEENLKQ 311 (315)
T ss_dssp --TSCEEECHHHHHH
T ss_pred --CCCCCcCHHHHHH
Confidence 4567899877765
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.4e-14 Score=148.70 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=69.3
Q ss_pred cCCCCcCChhhHHHHHHHHHHHH--HcCC---eEEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAK--SHNG---SFILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar--~~~G---~fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|||||.|||||+|+++...+++| ...| .|+--+||.+. ......+.+.+.++++.|||+|+.
T Consensus 11 P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~~~ 90 (350)
T d1pfva2 11 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDN 90 (350)
T ss_dssp CBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHcCCCccc
Confidence 69999999999999999999988 3445 56666777653 233568889999999999999986
Q ss_pred CccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 138 SETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 138 ~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
.. +.....+.+.-++..++|.++|.+|.
T Consensus 91 ~~-------~t~~~~~~~~~~~~~~~l~~~g~~~~ 118 (350)
T d1pfva2 91 YH-------STHSEENRQLSELIYSRLKENGFIKN 118 (350)
T ss_dssp EE-------ESSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CC-------CcCCcccchHHHHHHHHHhhccceee
Confidence 42 12233455666778899999999996
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=9.7e-15 Score=148.67 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=69.0
Q ss_pred eEecCCCCcCChhhHHHHHHHHHHHHHc-----CCeEEEeccCCCC-------------CCCcHHHHHHHHHHHHHcCCC
Q psy16872 73 KHFLTSTGLLHLGGLRTALYNYLFAKSH-----NGSFILRIEDTDQ-------------TRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 73 ~~fp~PtG~LHiG~~RtAL~n~l~Ar~~-----~G~fiLRiEDTD~-------------~R~~~~~~~~I~~~L~wlGl~ 134 (605)
+-+|+|||.|||||+|+++.-.++||-. ...||.-+||.+. ......+...+.+.++.+|+.
T Consensus 9 ~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (348)
T d2d5ba2 9 TPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIA 88 (348)
T ss_dssp CCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhcCcc
Confidence 3347999999999999999998888843 3456667787653 234567788899999999999
Q ss_pred CCCCccCCCccCcccccccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQSKRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 172 (605)
+|... +.......+..+...+.+++.|.+|.
T Consensus 89 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~ 119 (348)
T d2d5ba2 89 YDDFI-------RTTEERHKKVVQLVLKKVYEAGDIYY 119 (348)
T ss_dssp CSEEE-------ETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cccee-------ecccchhhHHHHHHHHHHHhhCcccc
Confidence 88632 12233344566677889999999885
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=7.2e-12 Score=131.40 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=67.9
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHH--cCCeEEEeccCCCC----------------CC----------------CcHHHH
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKS--HNGSFILRIEDTDQ----------------TR----------------FVPEAV 121 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~--~~G~fiLRiEDTD~----------------~R----------------~~~~~~ 121 (605)
|+|||.|||||||+++....+||- ..|.=++.+-.||. .. ...++.
T Consensus 43 Py~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (425)
T d1ivsa4 43 PNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122 (425)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHHHHHHHHHHHH
Confidence 599999999999999999999994 56876666644441 11 123567
Q ss_pred HHHHHHHHHcCCCCCCCccCCCccCccccc--ccHHHHHHHHHHHHHCCCEee
Q psy16872 122 EKLEQDLKWIGVVPDESETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 122 ~~I~~~L~wlGl~~De~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 172 (605)
+.|.++|+-||+..|... +|+.+ ++.+.-++...+|.++|.+|.
T Consensus 123 ~~~~~~~~~lg~~~d~~~-------~~~t~~~~~~~~~~~~~~~l~~~G~iy~ 168 (425)
T d1ivsa4 123 GTILKQLKRLGASADWSR-------EAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (425)
T ss_dssp HHHHHHHHHTTCCCCGGG-------CEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCccCcch-------hhcccchhhhhhhHHHHhhhhccCcccc
Confidence 889999999999888653 23333 466677888889999999984
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=8.8e-12 Score=131.61 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=62.0
Q ss_pred cceEEcCCCCcccHHHHHHHHHH---cCCCCC-c-EEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHh
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKA---FGWTPP-K-FAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~a---lG~~~P-~-f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~l 347 (605)
.+.++-|-|+.. ...|.+++.+ .|-.+| . +.| .++++.+|+||||+.|. +++.++.++ |.|+++|.||+..
T Consensus 356 ~~~~~~g~d~~~-~~fh~l~~~~~l~~~~~~~~~v~~h-g~iL~~~G~KMSKS~gn~I~~~dll~~-ygaD~lR~yl~~~ 432 (452)
T d1ilea3 356 ADFIAEGIDQTR-GWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVS 432 (452)
T ss_dssp BSBEEEEGGGGG-THHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHH
T ss_pred chhheecCceec-hhhHHHHHhHHHHcCCCCCCeEEEe-eEEECCCCcccCCCCCCCcCHHHHHHH-cCcHHHHHHHHhc
Confidence 344555666653 3455444432 233333 3 455 67899999999999997 799999999 9999999999887
Q ss_pred cCCCCCCCCCCccccCCHHHHHH
Q psy16872 348 GGGFHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 348 G~~~~~~~~~~~~e~~s~eeli~ 370 (605)
+ .. ..+..||.+.+.+
T Consensus 433 ~-~~------~~d~~Fs~~~~~e 448 (452)
T d1ilea3 433 A-PP------EADRRFGPNLVRE 448 (452)
T ss_dssp S-CS------SSCEECCHHHHHH
T ss_pred C-CC------CCCCCcCHHHHhH
Confidence 6 22 3567899988876
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=1.2e-10 Score=120.45 Aligned_cols=83 Identities=19% Similarity=0.356 Sum_probs=60.1
Q ss_pred CCcEEEecCCcccch---hhhhhhhhcC-CcceE--EcCCCCcccHHHHHHHHHHcCCCCCc-EEEecceecCCCccccc
Q psy16872 248 GDPVIIKSDGFPTYH---FANVVDDHHM-NISHV--LRGVEWQISTTKHILIYKAFGWTPPK-FAHLPLLLNLNGSKLSK 320 (605)
Q Consensus 248 ~D~Vi~ksDG~PtY~---fA~vVDD~~m-~ITHV--IRG~d~l~stpkqi~ly~alG~~~P~-f~H~plil~~dg~KLSK 320 (605)
++.||.||||.+||- +|...+-+.. +.+.+ |-|.||...-++.....++||++.+. +.|+..-+- .||||
T Consensus 199 ~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~~~~~l~~~l~~lg~~~~~~~~h~~~g~v---~kMSt 275 (348)
T d1f7ua2 199 GKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV---QGMST 275 (348)
T ss_dssp CEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE---ESCCG
T ss_pred ccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccchhhhhHHHHHHHhCCCcccceeeecCCcc---ccccc
Confidence 445778999999994 3333333333 45555 47999999888888999999998764 788653110 38999
Q ss_pred cCCC-CChHHHHHc
Q psy16872 321 RQGD-MSVEAIRNS 333 (605)
Q Consensus 321 R~g~-~sv~~~r~~ 333 (605)
|.|. ++++++.++
T Consensus 276 R~G~~i~l~dll~e 289 (348)
T d1f7ua2 276 RKGTVVFLDNILEE 289 (348)
T ss_dssp GGTCCCBHHHHHHH
T ss_pred cCCCceEHHHHHHH
Confidence 9997 688888766
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.05 E-value=6.3e-09 Score=110.56 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=58.0
Q ss_pred EEcCCCCcccHHHHHHHHH---HcCCCCC--cEEEecceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCC
Q psy16872 277 VLRGVEWQISTTKHILIYK---AFGWTPP--KFAHLPLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGG 350 (605)
Q Consensus 277 VIRG~d~l~stpkqi~ly~---alG~~~P--~f~H~plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~ 350 (605)
.+-|.|++. .-.+..+.. ..|..|+ .+.| +++++.+|+||||+.|+ ++..++.++ |.++|||.||+.. +
T Consensus 358 ~~~G~Di~r-~w~~~~~~~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GN~I~p~dii~~-yGaDalR~~l~s~--~ 432 (450)
T d1ffya3 358 YLEGSDQYR-GWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSST--D 432 (450)
T ss_dssp EEEEGGGGT-THHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHTS--C
T ss_pred cccCcchhh-HHHHHHHHHHHHhcCCCCcceEEEc-ceEECCCCCCCCCCCCCCcCHHHHHHH-hCcHHHHHHHHcC--C
Confidence 345777653 223433333 3466555 3455 88999999999999997 689999998 9999999998753 2
Q ss_pred CCCCCCCCccccCCHHHHHH
Q psy16872 351 FHDHQRTSKSQLFSMKDLVE 370 (605)
Q Consensus 351 ~~~~~~~~~~e~~s~eeli~ 370 (605)
+ ..+..||.+.|.+
T Consensus 433 ~------~~D~~fs~~~l~~ 446 (450)
T d1ffya3 433 Y------LADVRISDEILKQ 446 (450)
T ss_dssp T------TSCEECCHHHHHH
T ss_pred C------CCCcCcCHHHHHH
Confidence 3 4556788655554
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.01 E-value=8.7e-10 Score=111.95 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=63.1
Q ss_pred EecCCCCcCChhhHH-HHHHHHHHHHH--cC---CeEEEeccCCC-------------CCCCcHHHHHHHHHHHHHcCCC
Q psy16872 74 HFLTSTGLLHLGGLR-TALYNYLFAKS--HN---GSFILRIEDTD-------------QTRFVPEAVEKLEQDLKWIGVV 134 (605)
Q Consensus 74 ~fp~PtG~LHiG~~R-tAL~n~l~Ar~--~~---G~fiLRiEDTD-------------~~R~~~~~~~~I~~~L~wlGl~ 134 (605)
-.|||||.|||||+| ++|..++++|- .. ..|+.-.||.+ ++.....+...+.+++.-+++.
T Consensus 9 ~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (361)
T d1rqga2 9 ALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKIS 88 (361)
T ss_dssp CCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccccccccc
Confidence 347999999999976 67878888873 33 45665656543 2233567888899999999999
Q ss_pred CCCCccCCCccCccccc-ccHHHHHHHHHHHHHCCCEee
Q psy16872 135 PDESETVGGNYGPYLQS-KRLALYQKEVQTLLHNGSAYK 172 (605)
Q Consensus 135 ~De~p~~~g~~gpy~QS-er~~~Y~~~a~~Li~~G~AY~ 172 (605)
|+.... ..+ ++.+.-+.+...+.++|..|.
T Consensus 89 ~~~~~~--------t~~~~~~~~~~~~~~~~~~~~~~~~ 119 (361)
T d1rqga2 89 FDFFGR--------TELPIHYKLSQEFFLKAYENGHLVK 119 (361)
T ss_dssp CSEEEE--------TTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cccccc--------cccchhhhhhhhhhhhccccCceee
Confidence 987532 222 233344566778899998875
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=5.4e-10 Score=116.30 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=26.4
Q ss_pred HHHHHcCCCCC--cEEEecc-eecCCCccccccCCC-CChHHHHHc
Q psy16872 292 LIYKAFGWTPP--KFAHLPL-LLNLNGSKLSKRQGD-MSVEAIRNS 333 (605)
Q Consensus 292 ~ly~alG~~~P--~f~H~pl-il~~dg~KLSKR~g~-~sv~~~r~~ 333 (605)
.+.+++||... ...|++. +++.+|+|||||.|. ++++++.++
T Consensus 270 ~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~e 315 (370)
T d1iq0a2 270 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEE 315 (370)
T ss_dssp HHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHH
T ss_pred HHHHHhCCCchhhceeeEEEEEEecCCccccccCCCeeEHHHHHHH
Confidence 34577898632 4667662 345688999999997 688888775
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.73 E-value=2.3e-05 Score=82.24 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=72.5
Q ss_pred cCCCCcCChhhHHHHHHHHHHHHHc--CCeEEEeccCCCCC----------------CCcHHHHHHHHHHHHHcCCCCCC
Q psy16872 76 LTSTGLLHLGGLRTALYNYLFAKSH--NGSFILRIEDTDQT----------------RFVPEAVEKLEQDLKWIGVVPDE 137 (605)
Q Consensus 76 p~PtG~LHiG~~RtAL~n~l~Ar~~--~G~fiLRiEDTD~~----------------R~~~~~~~~I~~~L~wlGl~~De 137 (605)
|++||.||||||.+.+...++||-+ .|.-++-+-.||.. ..+.++.+.|.+.++.||+..|-
T Consensus 42 P~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 121 (494)
T d1h3na3 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121 (494)
T ss_dssp CCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHHhcCcccCC
Confidence 4999999999999999999999964 69999999988842 23567889999999999986653
Q ss_pred CccCCCccCccccc--ccHHHHHHHHHHHHHCCCEeee
Q psy16872 138 SETVGGNYGPYLQS--KRLALYQKEVQTLLHNGSAYKC 173 (605)
Q Consensus 138 ~p~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C 173 (605)
.. +|+.. ++.+.-+++..+|.++|.+|+.
T Consensus 122 ~~-------~~~T~d~~~~~~~~~~f~~l~~~g~iy~~ 152 (494)
T d1h3na3 122 DR-------EVTTCEPEYYRWNQWIFLKMWEKGLAYRA 152 (494)
T ss_dssp GG-------CCBTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CC-------ceecCCccccchHHHHHHHhhhCCcEEee
Confidence 21 24432 4456667888899999999974
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=0.0012 Score=66.87 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=66.0
Q ss_pred CcccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccCCC-CChHHHHHcC
Q psy16872 257 GFPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQGD-MSVEAIRNSE 334 (605)
Q Consensus 257 G~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~g~-~sv~~~r~~G 334 (605)
|..+|-.--+.|-...+.++|+.|.|...+--.=.-+.+.+|...|...|.|++.+.+|+ ||||+.++ +.+.
T Consensus 167 ~~f~YP~lQaaDi~~l~~~~vp~G~DQ~~~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L~------ 240 (343)
T d1h3fa1 167 HELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLT------ 240 (343)
T ss_dssp GGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTT------
T ss_pred hhhhhHHHHhhhhhhhcccccccccchHHHHHHHHHHHhhcCccccceeeccccccccccchhhcccccceeee------
Confidence 346666656667777889999999998765554456667899999999999999999995 99999765 4554
Q ss_pred CCHHHHHHHHHH
Q psy16872 335 FLPNALINFVTN 346 (605)
Q Consensus 335 ~~PeAl~nfla~ 346 (605)
=.|+.+..++..
T Consensus 241 dsp~~i~~Ki~~ 252 (343)
T d1h3fa1 241 EPPEAMFKKLMR 252 (343)
T ss_dssp SCHHHHHHHHHT
T ss_pred chhHHHHHHHhc
Confidence 379999988864
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0012 Score=66.45 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=51.8
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCccccccCCC--CChHHHHHcCC
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGSKLSKRQGD--MSVEAIRNSEF 335 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~KLSKR~g~--~sv~~~r~~G~ 335 (605)
.-+|-.--+.|-...+.++|+-|.|...+---=.-+.+.+|...|...|.|++.+.+|.||||+... +.+. =
T Consensus 160 ~f~YP~lQaaDil~~~ad~v~~G~DQ~~~i~l~rd~a~r~~~~~~~~l~~pll~~l~g~kmsks~~~~~I~l~------D 233 (339)
T d1n3la_ 160 GLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLL------D 233 (339)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCBTT------C
T ss_pred cccccHHHHHHHHhccCCccccchhHHHHHHHHHHHHhhhccCcceeeeeccccccccccccccchhhccccc------C
Confidence 4455555556666788999999999875333333444568898999999999999999999998533 3332 2
Q ss_pred CHHHHHHHHHH
Q psy16872 336 LPNALINFVTN 346 (605)
Q Consensus 336 ~PeAl~nfla~ 346 (605)
.|+.+.+=+..
T Consensus 234 ~~~~I~kKI~~ 244 (339)
T d1n3la_ 234 RKEDVKKKLKK 244 (339)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHhh
Confidence 45666655543
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.94 E-value=0.00099 Score=66.36 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=50.0
Q ss_pred cccchhhhhhhhhcCCcceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCCc-cccccCCC-CChHHHHHcCC
Q psy16872 258 FPTYHFANVVDDHHMNISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNGS-KLSKRQGD-MSVEAIRNSEF 335 (605)
Q Consensus 258 ~PtY~fA~vVDD~~m~ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg~-KLSKR~g~-~sv~~~r~~G~ 335 (605)
..+|-.--+.|-...+.++|+-|.|-. .|+.+.+-+.-+.|...|.|++.+.+|+ ||||+.++ +.+.+
T Consensus 148 ~~~YP~lQaaDil~~~~~~~~~G~DQ~----~~~~l~rdl~~~~~~~~~~~~l~gldG~~KMSKS~~n~I~L~D------ 217 (306)
T d1j1ua_ 148 EVIYPIMQVNDIHYLGVDVAVGGMEQR----KIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD------ 217 (306)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEGGGH----HHHHHHHHHSSSCCEEEEECCCCCTTCCC-------CSCBTTC------
T ss_pred cccccchhhcchhhcCcceeccchhhH----HHHHHhhhcccccceecccccccCcccccccccccccccccCC------
Confidence 344544455555567899999999974 3455555554456778899999999995 99999875 34432
Q ss_pred CHHHHHHHHHHh
Q psy16872 336 LPNALINFVTNF 347 (605)
Q Consensus 336 ~PeAl~nfla~l 347 (605)
.|+.+.+=+...
T Consensus 218 ~~e~I~~KI~~a 229 (306)
T d1j1ua_ 218 SPEEIRAKIKKA 229 (306)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHhhe
Confidence 688888887654
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00056 Score=70.60 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=51.0
Q ss_pred cceEEcCCCCcccHHHHHHHHHHcCCCCCcEEEecceecCCC--ccccccCCCCChHHHHHcCCCHHHHHHHHHHh
Q psy16872 274 ISHVLRGVEWQISTTKHILIYKAFGWTPPKFAHLPLLLNLNG--SKLSKRQGDMSVEAIRNSEFLPNALINFVTNF 347 (605)
Q Consensus 274 ITHVIRG~d~l~stpkqi~ly~alG~~~P~f~H~plil~~dg--~KLSKR~g~~sv~~~r~~G~~PeAl~nfla~l 347 (605)
-++|..|.|...+--.-.-+.+.+|+..|.-.|.|++.+.+| +||||+.+..+|. .-=.|+.+..=+...
T Consensus 223 ~~lvpvG~DQ~~h~~ltRDia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~----l~D~~~~i~~KI~~~ 294 (386)
T d1r6ta2 223 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF----LTDTAKQIKTKVNKH 294 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCB----TTCCHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCceeeccccccCCCCcccccccCCCCceee----ecCCHHHHHHHhhhe
Confidence 568889999875433334455678999999999999888888 5999998764431 013688888877664
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.0011 Score=66.41 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHcCCeEEEeccC----CCCC--CCcHHHHHHHHHHHHHcCCCCCCCccCCCccCcccc
Q psy16872 77 TSTGLLHLGGLRTALYNYLFAKSHNGSFILRIED----TDQT--RFVPEAVEKLEQDLKWIGVVPDESETVGGNYGPYLQ 150 (605)
Q Consensus 77 ~PtG~LHiG~~RtAL~n~l~Ar~~~G~fiLRiED----TD~~--R~~~~~~~~I~~~L~wlGl~~De~p~~~g~~gpy~Q 150 (605)
.|||.+||||.-.++-+|+.- +.+...++=|-| |+.. ....+....+..++-.+|++++.... |.|
T Consensus 9 ~PSG~~HlG~~~g~i~~~~~l-q~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i-------~~q 80 (326)
T d1i6la_ 9 QPSGVITIGNYIGALRQFVEL-QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATL-------FIQ 80 (326)
T ss_dssp CCCSCCBHHHHHHTHHHHHHH-TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEE-------EEG
T ss_pred CCCCccHHHHHHHHHHHHHHH-hCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEE-------Eee
Confidence 789999999999888888664 446665554554 1211 22334555667788899999987653 789
Q ss_pred cccHHHHHHHHHHHHHCCCEeeeCCCHHHHH
Q psy16872 151 SKRLALYQKEVQTLLHNGSAYKCFCSDSRLN 181 (605)
Q Consensus 151 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~e~l~ 181 (605)
|+..+.. +.+-. |.|.++-.+++
T Consensus 81 S~~~~~~-el~~~-------l~~~~~~~~l~ 103 (326)
T d1i6la_ 81 SEVPAHA-QAAWM-------LQCIVYIGELE 103 (326)
T ss_dssp GGCTHHH-HHHHH-------HHTTSCHHHHH
T ss_pred cccchHH-HHHHH-------HHhhhhhhhhh
Confidence 9865433 33322 34778866664
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.19 E-value=0.036 Score=57.07 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=42.8
Q ss_pred cceecCCCccccccCCC-CChHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCccccCCHHHHH
Q psy16872 308 PLLLNLNGSKLSKRQGD-MSVEAIRNSEFLPNALINFVTNFGGGFHDHQRTSKSQLFSMKDLV 369 (605)
Q Consensus 308 plil~~dg~KLSKR~g~-~sv~~~r~~G~~PeAl~nfla~lG~~~~~~~~~~~~e~~s~eeli 369 (605)
.++++.+|+||||+.|+ +.-.++.++ |-.+|||-||+..+ + ...+-.||.+.+.
T Consensus 436 g~v~d~~g~KMSKSlGNVIdP~~iI~~-YGADalRl~ll~~s-~------~g~di~~s~~~ie 490 (494)
T d1h3na3 436 GTLHLWKPAVMSKSKGNGVMVGPFVKE-QGADIARITILFAA-P------PENEMVWTEEGVQ 490 (494)
T ss_dssp SSEEEEEEEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHS-C------TTSCEEECHHHHH
T ss_pred ccEEeCCceeCCCCCCCcCCHHHHHHH-hCHHHHHHHHHhcC-C------cccCCCcChhcCe
Confidence 67788899999999998 578888887 99999999998776 2 2345557776654
|