Psyllid ID: psy16874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHcccccccEEccccccHHHHHccccccccHHHHHccccccccccEEEEEEccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEEHHHHHHHHHcccEEEEEccHHHHHHHHHccccccHHHHHHHHcccEcccEEEEEEccHHHHHccccccccccccHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
masqiprgafivfegcdrsgkttQAKKLVDYLNknnipsqfvnfpdrtistgHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSleneknldqgctndrysfsgvafsaakegmdiswcfqpekglpkpdAVLLFKLNEEALQRRkgfgderyeqtDFQRKVAENYEKLkdniwididadkdidtlGLIVKDIVIDTikksqfsplesnk
Flexible Loop (DISEMBL)
masqiprgafivfegcdrsgkTTQAKKLVDYLNknnipsqfvnfpdrtisTGHIIDEYLRKKIELPDQAAHLLFsanrwerepTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQrrkgfgderyeqtdfqrKVAEnyeklkdniwididadkdIDTLGLIVKDIVIDtikksqfsplesnk
Low Complexity Region (SEG)
MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKdniwididadkdidTLGLivkdividtikkSQFSPLESNK
Disordered region (IsUnstruct)
*******GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLE**KNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK***********
Disordered Region (DISOPRED)
*****PR**FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA***********YEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK***********
Disordered Region (DISEMBL)
MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ********
Disordered Region (DISPRO)
******RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q54GN2	222	Thymidylate kinase OS=Dic	yes	N/A	0.894	0.914	0.394	2e-42
P23919	212	Thymidylate kinase OS=Hom	yes	N/A	0.881	0.943	0.395	2e-41
Q91FS1	213	Putative thymidylate kina	N/A	N/A	0.863	0.920	0.436	3e-41
P97930	212	Thymidylate kinase OS=Mus	yes	N/A	0.898	0.962	0.407	7e-39
P36590	210	Thymidylate kinase OS=Sch	yes	N/A	0.823	0.890	0.393	1e-38
Q22018	218	Probable thymidylate kina	yes	N/A	0.814	0.848	0.427	3e-37
Q80DS7	204	Thymidylate kinase OS=Cow	N/A	N/A	0.832	0.926	0.387	7e-33
Q6RZD4	204	Thymidylate kinase OS=Rab	no	N/A	0.832	0.926	0.387	1e-32
Q80HT9	204	Thymidylate kinase OS=Vac	no	N/A	0.832	0.926	0.387	1e-32
Q77TG7	204	Thymidylate kinase OS=Vac	no	N/A	0.832	0.926	0.387	1e-32

>sp|Q54GN2|KTHY_DICDI Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 20/223 (8%)

Query: 3   SQIPRGAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRK 61
           + I RG FI+FEG DR GK+TQ + L +++ N   +P++ + FPDRT   G II++YL+ 
Sbjct: 14  TMIKRGLFILFEGVDRVGKSTQVQSLTNHISNVQKLPTKSLRFPDRTTPIGQIINQYLQN 73

Query: 62  KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG 121
              + D+A HLLFS+NRWE   ++ +L+  G  + +                 DRYS+SG
Sbjct: 74  ATNMDDRALHLLFSSNRWEARDSILELLNNGTNIVV-----------------DRYSYSG 116

Query: 122 VAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE 181
           VA+SAAK G+D  WC+  EKGLPKPD +    ++ E   +R  +G ERYE+ +FQ+K+ +
Sbjct: 117 VAYSAAK-GIDFDWCYACEKGLPKPDLIFYLSMSSEDATKRGEYGGERYEKLEFQKKIKQ 175

Query: 182 NY-EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
            Y EKL D+ W  I+A++ ID +   +  I     KK Q + +
Sbjct: 176 IYEEKLVDDQWKIINANRSIDEISNEISSIFDSEFKKIQLTSI 218

Catalyzes the conversion of dTMP to dTDP.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 9

>sp|P23919|KTHY_HUMAN Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 126/220 (57%), Gaps = 20/220 (9%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 5   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 64

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 65  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 107

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 108 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 167

Query: 187 -KDNI--WIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
            KD    W  +DA K I+ +   ++ +  D I+ +   PL
Sbjct: 168 MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIRTATEKPL 207

Catalyzes the conversion of dTMP to dTDP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q91FS1|KTHY_IIV6 Putative thymidylate kinase 251L OS=Invertebrate iridescent virus 6 GN=IIV6-251L PE=3 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 26/222 (11%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RG  IVFEGCD++GK+TQ K L + L + NI  + +NFP+RT  TG +ID+YL+ KI L 
Sbjct: 13  RGLLIVFEGCDKTGKSTQCKLLFEELKQKNIEVRMINFPNRTTQTGKLIDQYLKGKIYLS 72

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D+  H+LFS NRWE   T+   I  GIT+ I                 DRYS+SG+AFS 
Sbjct: 73  DEDIHILFSKNRWEIIDTIKTNILNGITVII-----------------DRYSYSGIAFSV 115

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AK G+D  WC Q E GL KPD ++      + +  R G+G E YE+ + Q KV + YEK+
Sbjct: 116 AK-GLDFQWCKQTENGLLKPDIIIYLTGQTKNMASRNGYGSEIYERIEIQDKVKKCYEKM 174

Query: 187 KD-NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK 227
            +  +W  I+AD+D+    LI+K  +   I+K  FS LE+NK
Sbjct: 175 IEIPLWNKINADQDV----LIIKKQIETIIQK--FS-LENNK 209

Catalyzes the conversion of dTMP to dTDP.

Spodoptera frugiperda (taxid: 7108)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|P97930|KTHY_MOUSE Thymidylate kinase OS=Mus musculus GN=Dtymk PE=2 SV=2

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 128/226 (56%), Gaps = 22/226 (9%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           MAS+  RGA IV EG DR+GKTTQ  KLV  L  +   ++ + FP+R+   G +++ YL 
Sbjct: 1   MASR--RGALIVLEGVDRAGKTTQGLKLVTALCASGHRAELLRFPERSTEIGKLLNSYLE 58

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
           KK EL D + HLLFSANRWE+ P +   + QG+TL +                 DRY+FS
Sbjct: 59  KKTELEDHSVHLLFSANRWEQVPLIKAKLNQGVTLVL-----------------DRYAFS 101

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVAF+ AKE   + WC QP+ GLPKPD +L  +L       R  FG ERYE   FQ++V 
Sbjct: 102 GVAFTGAKENFSLDWCKQPDVGLPKPDLILFLQLQLLDAAARGEFGLERYETGTFQKQVL 161

Query: 181 ENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
             +++L   K+  W  +DA K I+ +   ++    D I+ +   PL
Sbjct: 162 LCFQQLMEEKNLNWKVVDASKSIEEVHKEIRAHSEDAIRNAAQRPL 207

Catalyzes the conversion of dTMP to dTDP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|P36590|KTHY_SCHPO Thymidylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tmp1 PE=2 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 24/211 (11%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RG  IV EG DRSGK+TQ + LVD L   +  ++   FPDRT + G  ID+YL++ ++L 
Sbjct: 6   RGRLIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLN 65

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           DQ  HLLFSANRWE    + + I +G+T                 C  DRY+FSG+AFSA
Sbjct: 66  DQVIHLLFSANRWETIQYIYEQINKGVT-----------------CILDRYAFSGIAFSA 108

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AK G+D  WC  P++GLP+PD V+   ++      R  +G+ERYE+ + Q KV +N+++L
Sbjct: 109 AK-GLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRL 167

Query: 187 KDNI------WIDIDADKDIDTLGLIVKDIV 211
           +         +I +DA   ++ +   + D+V
Sbjct: 168 QKEFREEGLEFITLDASSSLEDVHSQIVDLV 198

Catalyzes the conversion of dTMP to dTDP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q22018|KTHY_CAEEL Probable thymidylate kinase OS=Caenorhabditis elegans GN=R53.2 PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 28/213 (13%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI--------PSQFVN-FPDRTIST 51
           MA+   RG  IVFEG DRSGK+TQAK+LV+ +NK +         PS  +  FPDR+ S 
Sbjct: 1   MATDQKRGLLIVFEGLDRSGKSTQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSSI 60

Query: 52  GHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG 111
           G +ID+YLRK+I++ + A HLLFSA+R+ +   +   I +GI               D  
Sbjct: 61  GKLIDQYLRKEIDMDEHALHLLFSADRFSKNQMIRDNIAKGI---------------DVI 105

Query: 112 CTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYE 171
           C  DRY +SGVA+S AK G+   W    + GLPKPDAVL F ++ E   +R GFG+ER E
Sbjct: 106 C--DRYCYSGVAYSLAK-GLPEQWVRSSDVGLPKPDAVLFFDVSPEVAAQRGGFGEERLE 162

Query: 172 QTDFQRKVAENYEKLKDNI-WIDIDADKDIDTL 203
               Q+KVA     L+D+  W  ++AD D+D++
Sbjct: 163 TATIQQKVAAVMPTLRDDAYWKTVNADGDLDSV 195

Catalyzes the conversion of dTMP to dTDP.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q80DS7|KTHY_CWPXG Thymidylate kinase OS=Cowpox virus (strain GRI-90 / Grishak) GN=TMK PE=3 SV=2

 Score =  140 bits (353), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 123/214 (57%), Gaps = 25/214 (11%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGA IVFEG D+SGKTTQ   +++ +  N I  +++NFP R+  TG +ID+YL +K  
Sbjct: 1   MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58

Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
             D   +LLF ANRWE    + + +EQGITL +                 DRY+FSGVA+
Sbjct: 59  YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101

Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           +AAK G  ++     E GLPKPD V+  +   + + R    G+E YE  +FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVEFQQKVLQEYK 158

Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
           K+    D  W  I ++ + D    ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192

Myodes glareolus (taxid: 447135)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q6RZD4|KTHY_RABPU Thymidylate kinase OS=Rabbitpox virus (strain Utrecht) GN=TMK PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGA IVFEG D+SGKTTQ   +++ +  N I  +++NFP R+  TG +ID+YL +K  
Sbjct: 1   MSRGALIVFEGLDKSGKTTQCMNIMESIPSNTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58

Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
             D   +LLF ANRWE    + + +EQGITL +                 DRY+FSGVA+
Sbjct: 59  YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101

Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           +AAK G  ++     E GLPKPD V+  +   + + R    G+E YE   FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158

Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
           K+    D  W  I ++ + D    ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q80HT9|KTHY_VACCW Thymidylate kinase OS=Vaccinia virus (strain Western Reserve) GN=TMK PE=3 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGA IVFEG D+SGKTTQ   +++ +  N I  +++NFP R+  TG +ID+YL +K  
Sbjct: 1   MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58

Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
             D   +LLF ANRWE    + + +EQGITL +                 DRY+FSGVA+
Sbjct: 59  YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101

Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           +AAK G  ++     E GLPKPD V+  +   + + R    G+E YE   FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158

Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
           K+    D  W  I ++ + D    ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192

Poxvirus TMP kinase is able to phosphorylate dTMP, dUMP and also dGMP from any purine and pyrimidine nucleoside triphosphate. The large substrate specificity is explained by the presence of a canal connecting the edge of the dimer interface to the TMP base binding pocket, canal not found in the human homolog.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

>sp|Q77TG7|KTHY_VACCT Thymidylate kinase OS=Vaccinia virus (strain Tian Tan) GN=TMK PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 25/214 (11%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGA IVFEG D+SGKTTQ   +++ +  N I  +++NFP R+  TG +ID+YL +K  
Sbjct: 1   MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58

Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
             D   +LLF ANRWE    + + +EQGITL +                 DRY+FSGVA+
Sbjct: 59  YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101

Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           +AAK G  ++     E GLPKPD V+  +   + + R    G+E YE   FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158

Query: 185 KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
           K+    D  W  I ++ + D    ++K+IVI+ I
Sbjct: 159 KMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAI 192

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
193631931	212	PREDICTED: thymidylate kinase-like isofo	0.907	0.971	0.477	5e-54
119113986	211	AGAP005260-PA [Anopheles gambiae str. PE	0.898	0.966	0.493	5e-52
291221635	211	PREDICTED: predicted protein-like [Sacco	0.907	0.976	0.452	2e-50
443697237	218	hypothetical protein CAPTEDRAFT_132783 [	0.859	0.894	0.490	2e-50
157116910	249	Thymidylate kinase, putative [Aedes aegy	0.876	0.799	0.463	3e-49
390346478	214	PREDICTED: thymidylate kinase-like [Stro	0.828	0.878	0.439	5e-49
303277967	214	predicted protein [Micromonas pusilla CC	0.881	0.934	0.429	7e-48
443429410	212	thymidylate kinase-like protein [Helicon	0.889	0.952	0.445	2e-47
307202789	209	Thymidylate kinase [Harpegnathos saltato	0.881	0.956	0.433	5e-47
242014820	601	thymidylate kinase, putative [Pediculus	0.713	0.269	0.494	7e-47

>gi|193631931|ref|XP_001951558.1| PREDICTED: thymidylate kinase-like isoform 3 [Acyrthosiphon pisum] gi|193631933|ref|XP_001951544.1| PREDICTED: thymidylate kinase-like isoform 2 [Acyrthosiphon pisum] gi|193631935|ref|XP_001951524.1| PREDICTED: thymidylate kinase-like isoform 1 [Acyrthosiphon pisum] gi|328724839|ref|XP_003248266.1| PREDICTED: thymidylate kinase-like [Acyrthosiphon pisum]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 144/226 (63%), Gaps = 20/226 (8%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M     RGA IV EGCDRSGKTTQ  KLV+ LN   IP++ ++FPDR+   G +I++YL 
Sbjct: 1   MTKSAMRGALIVLEGCDRSGKTTQCAKLVEALNNMKIPAKKISFPDRSTPIGSLINDYLS 60

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
           +KIELPD++ HLLFSANRWE EP + K IE G+TL +                 DRYS+S
Sbjct: 61  RKIELPDRSVHLLFSANRWELEPEIRKQIESGVTLIV-----------------DRYSYS 103

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GV F++AK+ +D  WC  PE GLPKPD V+  KL+   + +R GFGDERYE  +FQ KV 
Sbjct: 104 GVVFTSAKQCVDFKWCCGPENGLPKPDIVMFLKLSIGEMAKRSGFGDERYENIEFQNKVD 163

Query: 181 ENYEKLKDNIWIDIDADKDIDTLGLIVKDIV---IDTIKKSQFSPL 223
            NY+K K++ +I +DA +D+  L   + + V   IDT+K  +   L
Sbjct: 164 INYDKFKNDNFIQVDAAQDVSILTNTLLEQVLKTIDTVKNQELDDL 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113986|ref|XP_314179.3| AGAP005260-PA [Anopheles gambiae str. PEST] gi|116128380|gb|EAA09514.4| AGAP005260-PA [Anopheles gambiae str. PEST]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 142/223 (63%), Gaps = 19/223 (8%)

Query: 3   SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK 62
           SQ  RGAFIV EGCDR+GKTTQ K LVD L + NI +Q++NFPDR+   G +I+ YL +K
Sbjct: 4   SQGKRGAFIVLEGCDRTGKTTQCKTLVDKLMQVNIRAQYMNFPDRSTQCGQLINGYLTRK 63

Query: 63  IELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV 122
            +  D+  HLLF+ NRWER   + KL++ G+ L +                 DRYS+SGV
Sbjct: 64  DDFTDEGIHLLFTLNRWERMKEMEKLLKAGVNLIV-----------------DRYSYSGV 106

Query: 123 AFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN 182
           AFS+AK G+D+ WC  PE GL KPD V+L  L+ +AL RR GFGDERYE   FQ+KV E 
Sbjct: 107 AFSSAK-GLDMEWCKAPESGLLKPDLVILLTLSMDALARRGGFGDERYEVAGFQKKVIER 165

Query: 183 YEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
           Y  LKD+  W  IDADK  D +  ++ + V+  I+ S   PLE
Sbjct: 166 YGMLKDDRYWKAIDADKTFDDVTAVLYEEVLRAIEHSGDKPLE 208

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291221635|ref|XP_002730837.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 136/223 (60%), Gaps = 17/223 (7%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M   + RGA IV EGCDR GK+TQA+KLVD L     P++   FP+R+ S G +I  YL 
Sbjct: 1   MNGVVRRGALIVLEGCDRCGKSTQARKLVDTLVAGGTPAELWRFPERSSSIGQLIGSYLE 60

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
           KK E+ D A HLLFSANRWE  P + KL++ G T+ +                 DRY++S
Sbjct: 61  KKSEVEDHAIHLLFSANRWESVPRMRKLLQDGTTVVV-----------------DRYAYS 103

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVAF+AAKEG DI WC QP++GLP+PD VL   +  E   +R  FG ERYEQTDFQ++VA
Sbjct: 104 GVAFTAAKEGFDIEWCKQPDRGLPEPDLVLYLTIGAEDAAKRADFGGERYEQTDFQKRVA 163

Query: 181 ENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
           + Y  L+++ W  +DA + I  L   +  +  D I + +  P+
Sbjct: 164 DMYGLLREDRWETLDASQSIKDLHDQIAKLTRDIITRVENKPI 206

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|443697237|gb|ELT97772.1| hypothetical protein CAPTEDRAFT_132783 [Capitella teleta]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 133/216 (61%), Gaps = 21/216 (9%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M+    RGA IV EGCDRSGKTTQ +KLVD LN + IP+Q   FP+R  + G ++ +YL 
Sbjct: 1   MSRIARRGALIVLEGCDRSGKTTQCRKLVDALNTDGIPAQLWRFPERDTAIGQVVSDYLE 60

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
           +K EL D A HLLFSANRWE  P + + ++ G TL I                 DRY+FS
Sbjct: 61  RKCELDDHAVHLLFSANRWELVPKMLETLKNGTTLVI-----------------DRYAFS 103

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVAFSAAKE +D  WC + + GLP+PD +L   L  EA  +R  +G ERYEQ  FQ++VA
Sbjct: 104 GVAFSAAKESLDFEWCKKSDVGLPRPDLILYLNLGVEAAAQRSEYGGERYEQKPFQKRVA 163

Query: 181 ENYEKLKDNIWIDIDADKDI----DTLGLIVKDIVI 212
           ENY  L D+ W  IDA K I    D L  IVK+ V+
Sbjct: 164 ENYAALMDDDWKVIDAAKGINELHDELKSIVKNFVL 199

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|157116910|ref|XP_001652904.1| Thymidylate kinase, putative [Aedes aegypti] gi|108883432|gb|EAT47657.1| AAEL001246-PA [Aedes aegypti]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 137/218 (62%), Gaps = 19/218 (8%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EGCDR+GKTTQ K++V+ LN     ++F+NFPDR+   G +I+ YL  K    
Sbjct: 46  RGALIVLEGCDRAGKTTQCKRIVESLNSAGHKAKFMNFPDRSTQFGALINSYLTSKDNFT 105

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D+A HLLF+ NRWE +  + +L+  G+TL +                 DRYS+SGVAFSA
Sbjct: 106 DEAIHLLFTLNRWEAKNEMERLLRSGVTLIV-----------------DRYSYSGVAFSA 148

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AK G+++ WC  PE GLPKPD VLL  L  EA+ +R GFG ERYE  + Q+KV E +  L
Sbjct: 149 AK-GLNMDWCKAPETGLPKPDLVLLLTLTAEAMAKRGGFGQERYEVPELQKKVMEKFHTL 207

Query: 187 K-DNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL 223
           K D+ W  +DADK  D L L + ++V+D+++     PL
Sbjct: 208 KDDSYWKVVDADKKEDALSLELCEMVLDSMESCSDKPL 245

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390346478|ref|XP_789676.2| PREDICTED: thymidylate kinase-like [Strongylocentrotus purpuratus] gi|390358306|ref|XP_784160.2| PREDICTED: thymidylate kinase-like [Strongylocentrotus purpuratus]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 142/205 (69%), Gaps = 17/205 (8%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA +VFEGCDRSGK+TQ KKLV+ + +  + ++ + FP+R+   G +ID YL+   ++ 
Sbjct: 3   RGALVVFEGCDRSGKSTQCKKLVESMLEKGMKAELMRFPERSTVIGKLIDSYLKNSKDVQ 62

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D A HLLFSANRWE +P + + + +G+TL +                 DRY++SGVAF+A
Sbjct: 63  DNAIHLLFSANRWELKPEMERKLNEGVTLVV-----------------DRYAYSGVAFTA 105

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKEG+ ++WC +P+ GLP PD VL  K++ EA ++R GFG+ERYE+++ Q +VA+N+EKL
Sbjct: 106 AKEGISLNWCKRPDVGLPLPDLVLFLKVSSEAAEKRGGFGEERYEKSEIQARVAKNFEKL 165

Query: 187 KDNIWIDIDADKDIDTLGLIVKDIV 211
           ++N W  I+AD+ ++ +   ++++V
Sbjct: 166 QENDWEIINADQSMEDVQKQIQNVV 190

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|303277967|ref|XP_003058277.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460934|gb|EEH58228.1| predicted protein [Micromonas pusilla CCMP1545]

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 134/219 (61%), Gaps = 19/219 (8%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           MAS + RGAFI+FEG DR GKTTQ+ KLV+ L  + + ++   +PDRT S G +I+ YL+
Sbjct: 1   MASLVARGAFILFEGVDRCGKTTQSTKLVEALKSSGVNAELWRYPDRTTSMGQMINSYLQ 60

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
            K E+ D A HLLF+ANRWE+   +   + +G+TL +                 DRYS+S
Sbjct: 61  SKTEMDDGAIHLLFAANRWEKRAAMEAKLAEGVTLVV-----------------DRYSYS 103

Query: 121 GVAFSAAK--EGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRK 178
           GVAF+AAK   G+D+ WC  PE GL +PDAVL   +  EA   R GFG+ERYE +D Q+ 
Sbjct: 104 GVAFTAAKGIPGLDLEWCKSPEVGLLRPDAVLYLNMPVEAAAARGGFGEERYETSDLQKA 163

Query: 179 VAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
           V  N++KL+++ W  +DA   +D +    + +  D + K
Sbjct: 164 VRANFDKLREDWWTIVDATGTVDEVHAACRAVADDAVAK 202

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|443429410|gb|AGC92695.1| thymidylate kinase-like protein [Heliconius erato]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 137/220 (62%), Gaps = 18/220 (8%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGAFIV EG DR+GKTTQAKKLV+ L    +P++++NFPDR    G +I+ YL  K +
Sbjct: 7   LKRGAFIVIEGVDRTGKTTQAKKLVESLKNKQVPAEYMNFPDRKTDIGEVINSYLTSKND 66

Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
           L ++A HLLFSANRWE+   + + I  G+T+ +                 DRY FSGVA+
Sbjct: 67  LSNEAIHLLFSANRWEKVNYVKEKILNGVTVIV-----------------DRYCFSGVAY 109

Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           SAAK G+D+SWC  P+ GLPKPD V  F L  E +Q+R GFG ERYE  +FQ+KV   Y 
Sbjct: 110 SAAK-GLDLSWCKSPDAGLPKPDKVFFFTLPLEHVQQRNGFGSERYEVPEFQKKVTATYM 168

Query: 185 KLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
           KLK++ W  +DA + ++ +   + + V+  +      P+E
Sbjct: 169 KLKEDNWDMLDASRSLEVIHKELVEKVLSVVDGVDNKPIE 208

Source: Heliconius erato

Species: Heliconius erato

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202789|gb|EFN82074.1| Thymidylate kinase [Harpegnathos saltator]

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 142/219 (64%), Gaps = 19/219 (8%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EGCDR+GK+TQ K L + LN+ +IP++   FP+R    G +++ +L K+I +P
Sbjct: 5   RGALIVLEGCDRAGKSTQVKLLTNALNERSIPTKASAFPNRNTPIGGLLNGFLSKEINIP 64

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
            +AAHLLFSANRWE +  + K++  G TL I                 DRY+ SG A++A
Sbjct: 65  PEAAHLLFSANRWECKEDIEKMLLSGTTLVI-----------------DRYASSGTAYTA 107

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           A  G  ++WC QP+ GLPKPD V+L K+++   + R  +G+ER+EQ D Q +V+ NYEKL
Sbjct: 108 ANTGRCLNWCKQPDLGLPKPDCVMLLKVSKHQQELRNNWGEERFEQNDLQVRVSANYEKL 167

Query: 187 KDNIWIDIDADKDIDTL-GLIVKDIVIDTIKKSQFSPLE 224
           KD+ W+ +DAD+++ T+ G I+K   +  I++ QF  +E
Sbjct: 168 KDDTWMTVDADQNVLTIHGEILKK-ALSVIQEVQFRRIE 205

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014820|ref|XP_002428083.1| thymidylate kinase, putative [Pediculus humanus corporis] gi|212512602|gb|EEB15345.1| thymidylate kinase, putative [Pediculus humanus corporis]

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 123/196 (62%), Gaps = 34/196 (17%)

Query: 8   GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD 67
           GA IVFEGCDR+GKTTQ KKLV+ LN+  I SQF+ FP+                 +L D
Sbjct: 416 GALIVFEGCDRAGKTTQCKKLVEKLNELGIKSQFMQFPE-----------------DLND 458

Query: 68  QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA 127
           Q  HLLFSANRWE +P + KL+ + +TL +                 DRYSFSGVA+SAA
Sbjct: 459 QTVHLLFSANRWENQPKMVKLLHEEVTLIV-----------------DRYSFSGVAYSAA 501

Query: 128 KEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK 187
           K GMD  WC++PE GLPKPD V L  +    L++R GFG+ERYE  DFQ+ V +NY K+K
Sbjct: 502 KPGMDFKWCYKPEIGLPKPDLVFLLYVPVNVLKKRIGFGEERYENNDFQQSVFDNYIKMK 561

Query: 188 DNIWIDIDADKDIDTL 203
           D+ W  IDA K+I+ +
Sbjct: 562 DDTWHLIDASKNINEI 577

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
ZFIN|ZDB-GENE-990603-11	212	dtymk "deoxythymidylate kinase	0.400	0.429	0.494	1.4e-40
TAIR|locus:2148283	271	ZEU1 "ZEUS1" [Arabidopsis thal	0.396	0.332	0.5	1.4e-40
POMBASE|SPCC70.07c	210	tmp1 "thymidylate kinase Tmp1"	0.387	0.419	0.488	1.5e-37
UNIPROTKB|P23919	212	DTYMK "Thymidylate kinase" [Ho	0.400	0.429	0.450	2.4e-37
MGI|MGI:108396	212	Dtymk "deoxythymidylate kinase	0.409	0.438	0.494	4e-37
RGD|1309614	212	Dtymk "deoxythymidylate kinase	0.409	0.438	0.484	1.3e-36
WB|WBGene00011272	218	R53.2 [Caenorhabditis elegans	0.409	0.426	0.470	7.1e-34
GENEDB_PFALCIPARUM|PFL2465c	210	PFL2465c "thymidylate kinase,	0.409	0.442	0.462	1.5e-33
UNIPROTKB|Q8I4S1	210	TMK "Thymidylate kinase, putat	0.409	0.442	0.462	1.5e-33
CGD|CAL0001967	224	orf19.1137 [Candida albicans (	0.740	0.75	0.412	1.5e-28

ZFIN|ZDB-GENE-990603-11 dtymk "deoxythymidylate kinase (thymidylate kinase)" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 45/91 (49%), Positives = 59/91 (64%)

Query:     7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
             RGA IV EG DR+GKTTQ +KLV  + ++   ++ + FPDRT   G +I  YL KK  L 
Sbjct:     5 RGALIVLEGVDRAGKTTQCQKLVQAIQQSGRAAEIMRFPDRTTKIGQLISSYLEKKSNLE 64

Query:    67 DQAAHLLFSANRWEREPTLTKLIEQGITLEI 97
             D   HLLFSANRWE  P + + +E+GI L +
Sbjct:    65 DHTVHLLFSANRWEMVPVMKQKLEEGINLVV 95

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2148283 ZEU1 "ZEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 45/90 (50%), Positives = 57/90 (63%)

Query:     6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
             PRGA IV EG DRSGK+TQ  KL+ +LN    P++   FPDR  S G +I  YL  K +L
Sbjct:    65 PRGALIVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLSNKSQL 124

Query:    66 PDQAAHLLFSANRWEREPTLTKLIEQGITL 95
              D   HLLFSANRWE+   + + ++ G TL
Sbjct:   125 DDHTIHLLFSANRWEKRSLMEEKLKTGTTL 154

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

POMBASE|SPCC70.07c tmp1 "thymidylate kinase Tmp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 217 (81.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 43/88 (48%), Positives = 58/88 (65%)

Query:     7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
             RG  IV EG DRSGK+TQ + LVD L   +  ++   FPDRT + G  ID+YL++ ++L 
Sbjct:     6 RGRLIVIEGLDRSGKSTQCQLLVDKLISQHEKAELFKFPDRTTAIGKKIDDYLKESVQLN 65

Query:    67 DQAAHLLFSANRWEREPTLTKLIEQGIT 94
             DQ  HLLFSANRWE    + + I +G+T
Sbjct:    66 DQVIHLLFSANRWETIQYIYEQINKGVT 93

GO:0004798 "thymidylate kinase activity" evidence=IGI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006227 "dUDP biosynthetic process" evidence=IGI

GO:0006233 "dTDP biosynthetic process" evidence=IGI

GO:0006235 "dTTP biosynthetic process" evidence=IGI

GO:0009041 "uridylate kinase activity" evidence=IGI

UNIPROTKB|P23919 DTYMK "Thymidylate kinase" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 41/91 (45%), Positives = 63/91 (69%)

Query:     7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
             RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct:     5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 64

Query:    67 DQAAHLLFSANRWEREPTLTKLIEQGITLEI 97
             D + HLLFSANRWE+ P + + + QG+TL +
Sbjct:    65 DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV 95

GO:0005524 "ATP binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045445 "myoblast differentiation" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0007049 "cell cycle" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0004798 "thymidylate kinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050145 "nucleoside phosphate kinase activity" evidence=EXP

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0046940 "nucleoside monophosphate phosphorylation" evidence=EXP

MGI|MGI:108396 Dtymk "deoxythymidylate kinase" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 47/95 (49%), Positives = 63/95 (66%)

Query:     1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
             MAS+  RGA IV EG DR+GKTTQ  KLV  L  +   ++ + FP+R+   G +++ YL 
Sbjct:     1 MASR--RGALIVLEGVDRAGKTTQGLKLVTALCASGHRAELLRFPERSTEIGKLLNSYLE 58

Query:    61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITL 95
             KK EL D + HLLFSANRWE+ P +   + QG+TL
Sbjct:    59 KKTELEDHSVHLLFSANRWEQVPLIKAKLNQGVTL 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006233 "dTDP biosynthetic process" evidence=ISO;IDA

GO:0006235 "dTTP biosynthetic process" evidence=ISO

GO:0009165 "nucleotide biosynthetic process" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IDA

GO:0071363 "cellular response to growth factor stimulus" evidence=IDA

RGD|1309614 Dtymk "deoxythymidylate kinase (thymidylate kinase)" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 46/95 (48%), Positives = 62/95 (65%)

Query:     1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
             MAS+  RGA IV EG DR+GKTTQ  +LV  L  +   ++ + FP+R+   G ++  YL 
Sbjct:     1 MASR--RGALIVLEGVDRAGKTTQCLRLVTALCASGHRAELLRFPERSTEIGKLLSSYLE 58

Query:    61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITL 95
             KK EL D + HLLFSANRWE+ P +   + QG+TL
Sbjct:    59 KKTELEDHSVHLLFSANRWEQVPLIKAKLNQGVTL 93

GO:0004798 "thymidylate kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006233 "dTDP biosynthetic process" evidence=ISO;IDA

GO:0006235 "dTTP biosynthetic process" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=ISO

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0045445 "myoblast differentiation" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0046940 "nucleoside monophosphate phosphorylation" evidence=ISO

GO:0050145 "nucleoside phosphate kinase activity" evidence=IEA;ISO

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA;ISO

WB|WBGene00011272 R53.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 214 (80.4 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 48/102 (47%), Positives = 67/102 (65%)

Query:     1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI--------PSQFVN-FPDRTIST 51
             MA+   RG  IVFEG DRSGK+TQAK+LV+ +NK +         PS  +  FPDR+ S 
Sbjct:     1 MATDQKRGLLIVFEGLDRSGKSTQAKRLVESINKKSTESGDASSSPSAVLQAFPDRSSSI 60

Query:    52 GHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGI 93
             G +ID+YLRK+I++ + A HLLFSA+R+ +   +   I +GI
Sbjct:    61 GKLIDQYLRKEIDMDEHALHLLFSADRFSKNQMIRDNIAKGI 102

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GENEDB_PFALCIPARUM|PFL2465c PFL2465c "thymidylate kinase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 222 (83.2 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 43/93 (46%), Positives = 60/93 (64%)

Query:     1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
             M     +G FIVFEG DRSGK+TQ+K LV+YL  NN+  + + FP+R    G II +YL+
Sbjct:     1 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 60

Query:    61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGI 93
              +  + ++  HLLFSANRWE    +  L+ +GI
Sbjct:    61 MENSMSNETIHLLFSANRWEHMNEIKSLLLKGI 93

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8I4S1 TMK "Thymidylate kinase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 222 (83.2 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 43/93 (46%), Positives = 60/93 (64%)

Query:     1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
             M     +G FIVFEG DRSGK+TQ+K LV+YL  NN+  + + FP+R    G II +YL+
Sbjct:     1 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 60

Query:    61 KKIELPDQAAHLLFSANRWEREPTLTKLIEQGI 93
              +  + ++  HLLFSANRWE    +  L+ +GI
Sbjct:    61 MENSMSNETIHLLFSANRWEHMNEIKSLLLKGI 93

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0001967 orf19.1137 [Candida albicans (taxid:5476)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/177 (41%), Positives = 101/177 (57%)

Query:     7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL-RKKIEL 65
             RG  I+ EG DRSGK+TQA  L   L+    PS+ + FPDR+   G +I+EYL  K   L
Sbjct:     3 RGQLILIEGLDRSGKSTQASILSTKLS----PSKLIKFPDRSTPIGKLINEYLTNKSFTL 58

Query:    66 PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
              DQAAHLLFSANRWE    +  L+ QG  + I+   + +   +      + +    ++  
Sbjct:    59 SDQAAHLLFSANRWELSQQIQDLLNQGYFI-ILDRYIYS--GIAYTLAKNDFHDETISQG 115

Query:   126 AAKEGMD-ISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE 181
               K+ ++ I W   P+KGLPKPD  L   L+ E + +RKG+GDERYE   FQ KV +
Sbjct:   116 KNKQQLNNIDWLLSPDKGLPKPDLTLFLTLDLEEISKRKGWGDERYELQQFQAKVKQ 172

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006233 "dTDP biosynthetic process" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006235 "dTTP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0004798 "thymidylate kinase activity" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5GQJ8	KTHY_SYNR3	2, ., 7, ., 4, ., 9	0.2577	0.8502	0.9103	yes	N/A
O67099	KTHY_AQUAE	2, ., 7, ., 4, ., 9	0.3128	0.7268	0.8461	yes	N/A
Q9V1E9	KTHY_PYRAB	2, ., 7, ., 4, ., 9	0.3105	0.7224	0.8	yes	N/A
Q72NL9	KTHY_LEPIC	2, ., 7, ., 4, ., 9	0.2976	0.8193	0.9117	yes	N/A
A4J0K6	KTHY_DESRM	2, ., 7, ., 4, ., 9	0.3269	0.7709	0.8454	yes	N/A
A3DM71	KTHY_STAMF	2, ., 7, ., 4, ., 9	0.2824	0.8105	0.9246	yes	N/A
A6UTV9	KTHY_META3	2, ., 7, ., 4, ., 9	0.3011	0.6519	0.7551	yes	N/A
O59366	KTHY_PYRHO	2, ., 7, ., 4, ., 9	0.3265	0.6960	0.7707	yes	N/A
C0R1X1	KTHY_BRAHW	2, ., 7, ., 4, ., 9	0.28	0.8546	0.9556	yes	N/A
P23919	KTHY_HUMAN	2, ., 7, ., 4, ., 9	0.3954	0.8810	0.9433	yes	N/A
C5A1K2	KTHY_THEGJ	2, ., 7, ., 4, ., 9	0.3010	0.7004	0.7644	yes	N/A
A2CD19	KTHY_PROM3	2, ., 7, ., 4, ., 9	0.2468	0.8634	0.9074	yes	N/A
P00572	KTHY_YEAST	2, ., 7, ., 4, ., 9	0.4255	0.7224	0.7592	yes	N/A
Q57741	KTHY_METJA	2, ., 7, ., 4, ., 9	0.3350	0.7136	0.8617	yes	N/A
Q54GN2	KTHY_DICDI	2, ., 7, ., 4, ., 9	0.3946	0.8942	0.9144	yes	N/A
Q04YY2	KTHY_LEPBL	2, ., 7, ., 4, ., 9	0.3157	0.7841	0.8682	yes	N/A
Q7V4G2	KTHY_PROMM	2, ., 7, ., 4, ., 9	0.2510	0.8634	0.9074	yes	N/A
P36590	KTHY_SCHPO	2, ., 7, ., 4, ., 9	0.3933	0.8237	0.8904	yes	N/A
Q8F7Y6	KTHY_LEPIN	2, ., 7, ., 4, ., 9	0.2976	0.8193	0.9117	yes	N/A
Q8U071	KTHY_PYRFU	2, ., 7, ., 4, ., 9	0.3302	0.7400	0.8	yes	N/A
Q04UJ2	KTHY_LEPBJ	2, ., 7, ., 4, ., 9	0.3157	0.7841	0.8682	yes	N/A
Q5JH21	KTHY_PYRKO	2, ., 7, ., 4, ., 9	0.3076	0.7709	0.8536	yes	N/A
B6YSZ4	KTHY_THEON	2, ., 7, ., 4, ., 9	0.3065	0.6784	0.7512	yes	N/A
Q22018	KTHY_CAEEL	2, ., 7, ., 4, ., 9	0.4272	0.8149	0.8486	yes	N/A
P97930	KTHY_MOUSE	2, ., 7, ., 4, ., 9	0.4070	0.8986	0.9622	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.921
4th Layer	2.7.4.9	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	227
PLN02924	220	PLN02924, PLN02924, thymidylate kinase	4e-78
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	4e-35
pfam02223	186	pfam02223, Thymidylate_kin, Thymidylate kinase	2e-32
TIGR00041	195	TIGR00041, DTMP_kinase, thymidylate kinase	1e-25
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	1e-20
PRK00698	205	PRK00698, tmk, thymidylate kinase; Validated	4e-20
PRK13975	196	PRK13975, PRK13975, thymidylate kinase; Provisiona	2e-18
PRK13974	212	PRK13974, PRK13974, thymidylate kinase; Provisiona	1e-10
PRK07933	213	PRK07933, PRK07933, thymidylate kinase; Validated	2e-05
PRK13973	213	PRK13973, PRK13973, thymidylate kinase; Provisiona	5e-04
PRK13976	209	PRK13976, PRK13976, thymidylate kinase; Provisiona	0.001
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	0.004

>gnl|CDD|178512 PLN02924, PLN02924, thymidylate kinase

 Score =  233 bits (597), Expect = 4e-78
 Identities = 95/219 (43%), Positives = 135/219 (61%), Gaps = 18/219 (8%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
            +S   RGA IV EG DRSGK+TQ  KLV +L    + ++   FPDRT S G +I  YL 
Sbjct: 9   ESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS 68

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
            K +L D+A HLLFSANRWE+   + + ++ G TL +                 DRYS+S
Sbjct: 69  NKSQLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVV-----------------DRYSYS 111

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVAFSAAK G+D+ WC  PE GLP PD VL   ++ E    R G+G ERYE+ +FQ+KVA
Sbjct: 112 GVAFSAAK-GLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVA 170

Query: 181 ENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ 219
           + ++ L+D+ W  IDA + I+ +   ++++V+DT+++  
Sbjct: 171 KRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDTVQRCL 209

Length = 220

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score =  123 bits (311), Expect = 4e-35
 Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 37/225 (16%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE-L 65
           +G FIV EG D +GKTTQA+ L + L +  I       P  T   G  I E L    E L
Sbjct: 2   KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGT-PIGEKIRELLLNGEEKL 60

Query: 66  PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYSFSGVA 123
             +A  LLF+A+R +        +E+ I           +  L +G     DRY  S +A
Sbjct: 61  SPKAEALLFAADRAQ-------HLEEVI-----------KPALKEGKVVICDRYVDSSLA 102

Query: 124 FSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGD--ERYEQTD--F 175
           +     G+D+ W     +   G  KPD  L   +  E AL+R +  G+  +R+E+ D  F
Sbjct: 103 YQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEF 162

Query: 176 QRKVAENYEKLKDNI---WIDIDADKDIDTLGLIVKDIVIDTIKK 217
             KV E Y +L        I IDA + ++     V + ++  +K+
Sbjct: 163 LEKVREGYLELAAKFPERIIVIDASRPLEE----VHEEILKILKE 203

Length = 208

>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase

 Score =  115 bits (291), Expect = 2e-32
 Identities = 63/208 (30%), Positives = 87/208 (41%), Gaps = 32/208 (15%)

Query: 13  FEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHL 72
            EG D +GKTTQA+ L + L +  I              G  I E L +  EL      L
Sbjct: 1   IEGLDGAGKTTQAELLKERLKEQGIKVVL-TREPGGTPIGEKIRELLLRNEELSPLTEAL 59

Query: 73  LFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYSFSGVAFSAAKEG 130
           LF+A+R E        +E+ I           +  L QG T   DRY FS +A+  A  G
Sbjct: 60  LFAADRIE-------HLEEKI-----------KPALKQGKTVICDRYLFSSIAYQGAAGG 101

Query: 131 MDIS--WCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERY----EQTDFQRKVAENYE 184
           + +       P+   PKPD   L  ++ E   +R     E      EQ DF RKV E Y 
Sbjct: 102 LGLDLVLSLNPDVPGPKPDLTFLLDVDPEVALKRLRRRGELDEFEFEQLDFLRKVRERYL 161

Query: 185 KL--KDNIWIDIDADKDIDTLGLIVKDI 210
           +L   D   + IDA   I+    + ++I
Sbjct: 162 ELAKDDERILIIDASNSIE---EVHEEI 186

Length = 186

>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase

 Score = 98.6 bits (246), Expect = 1e-25
 Identities = 63/213 (29%), Positives = 91/213 (42%), Gaps = 39/213 (18%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK----- 61
           RG FIV EG D +GKTTQA  L   L +N     F   P      G  I E +R+     
Sbjct: 2   RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP-----GGTPIGEKIRELLLNE 56

Query: 62  -KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGC--TNDRYS 118
               L D+A  LLF+A+R E        +E  I           +  L +G    +DRY 
Sbjct: 57  NDEPLTDKAEALLFAADRHE-------HLEDKI-----------KPALAEGKLVISDRYV 98

Query: 119 FSGVAFSAAKEGMDIS--WCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGD---ERYEQ 172
           FS +A+     G+D         +     PD  +   ++ E AL+R +  G+   E +E+
Sbjct: 99  FSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEK 158

Query: 173 TDFQRKVAENYEKLKDNI--WIDIDADKDIDTL 203
            DF  KV + Y +L D       IDA   ++ +
Sbjct: 159 LDFFEKVRQRYLELADKEKSIHVIDATNSVEEV 191

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 195

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 56/228 (24%), Positives = 88/228 (38%), Gaps = 49/228 (21%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
           FIVFEG D +GKTT  + L + L            P      G  I E +R+ +  P+  
Sbjct: 2   FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP-----GGTPIGEAIRELLLDPEDE 56

Query: 70  AH------LLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYSF 119
                   LLF+A+R        + +E+ I           +  L +G       DR+  
Sbjct: 57  KMDPRAELLLFAADR-------AQHVEEVI-----------KPALARGKIVLS--DRFVD 96

Query: 120 SGVAFSAAKEGMD---ISWCFQPEKGLPKPDAVLLFKLN-EEALQR---RKGFGDERYEQ 172
           S +A+  A  G+    I        G  KPD  +L  ++ E  L R   R     +  E 
Sbjct: 97  SSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEG 156

Query: 173 TDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
            +F  +V E Y +L   +    I IDA + ++     V   ++  I +
Sbjct: 157 LEFHERVREGYLELAAQEPERIIVIDASQPLE----EVLAEILKAILE 200

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated

 Score = 84.1 bits (209), Expect = 4e-20
 Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 43/223 (19%)

Query: 6   PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
            RG FI  EG D +GK+TQ + L + L +      F   P      G  + E LR+ +  
Sbjct: 1   MRGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREP-----GGTPLGEKLRELLLD 55

Query: 66  PDQAAH-----LLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYS 118
           P++        LLF A R +        +E+ I           +  L +G    +DR+ 
Sbjct: 56  PNEEMDDKTELLLFYAARAQ-------HLEEVI-----------KPALARGKWVISDRFI 97

Query: 119 FSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGD-ERYEQ- 172
            S +A+     G+DI           G  +PD  L   +  E  L R +  G+ +R EQ 
Sbjct: 98  DSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQE 157

Query: 173 -TDFQRKVAENYEKL--KDNIWID-IDADKDIDTLGLIVKDIV 211
             DF  +V E Y +L  K+   I  IDA + ++    + +DI+
Sbjct: 158 GLDFFERVREGYLELAEKEPERIVVIDASQSLEE---VHEDIL 197

Length = 205

>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 70/210 (33%), Positives = 98/210 (46%), Gaps = 38/210 (18%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
           FIVFEG D SGKTTQAK L + LN       F          G +I E L    +   + 
Sbjct: 4   FIVFEGIDGSGKTTQAKLLAEKLNA------FWTCEPTDGKIGKLIREILSGS-KCDKET 56

Query: 70  AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
             LLF+A+R E      K IE            E+ K  D  C  DRY +S +A+ +  +
Sbjct: 57  LALLFAADRVEH----VKEIE------------EDLKKRDVVC--DRYVYSSIAYQSV-Q 97

Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD 188
           G+D  + +   +   KPD V L  ++ EEAL+R +    E +E+ +F +KV E Y +L  
Sbjct: 98  GIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLEL-- 155

Query: 189 NIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218
                 + +K +   G     IVIDT  KS
Sbjct: 156 -----ANNEKFMPKYGF----IVIDTTNKS 176

Length = 196

>gnl|CDD|172477 PRK13974, PRK13974, thymidylate kinase; Provisional

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 46/235 (19%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQFVNFPDRTIST----GHIIDEYLRK 61
           +G FIV EG D  GKTTQ   L  +L  +  +P        + I T    G ++ + LR+
Sbjct: 2   KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKG-----AKLIITREPGGTLLGKSLRE 56

Query: 62  KI------ELPDQAAHL-LFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--C 112
            +        P   A L L++A+R +    ++K+I                  L+ G   
Sbjct: 57  LLLDTSKDNSPSPLAELLLYAADRAQH---VSKIIRPA---------------LENGDWV 98

Query: 113 TNDRYSFSGVAFSAAKEGMDISWCFQPE----KGLPKPDAVLLFKLN-EEALQRRKGFGD 167
            +DR+S S +A+     G+D+      E    +GL  PD     +++ EE+++RRK    
Sbjct: 99  ISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGL-SPDLTFFLEISVEESIRRRKNRKP 157

Query: 168 ERYEQ--TDFQRKVAENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ 219
           +R E    +F  +VAE +  + ++  W  I AD+ I+T+   +K+ +++     +
Sbjct: 158 DRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNKK 212

Length = 212

>gnl|CDD|236133 PRK07933, PRK07933, thymidylate kinase; Validated

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 44/219 (20%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP--DRTISTGHIIDEYLRKKI-ELPD 67
           I  EG D +GK T  + L   L         + FP   R++    +  E L  +  +L D
Sbjct: 3   IAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSV-HADLAAEALHGRHGDLAD 61

Query: 68  Q--AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
              A   LF+ +R      L  L+     + +                 DRY  S  A+S
Sbjct: 62  SVYAMATLFALDRAGARDELAGLLAAHDVVIL-----------------DRYVASNAAYS 104

Query: 126 AAKEGMD-----ISWCFQPEK---GLPKPDAVLLFKLNEE-ALQRRKGFGDE-------R 169
           AA+   D     ++W  + E    GLP PD  +L  +  E A +R +    +        
Sbjct: 105 AARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADRARDA 164

Query: 170 YEQTD-FQRKVAENYEKL-KDNI---WIDIDADKDIDTL 203
           YE+ D  Q++    Y +L        W+ +D D D   L
Sbjct: 165 YERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAAL 203

Length = 213

>gnl|CDD|184429 PRK13973, PRK13973, thymidylate kinase; Provisional

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 7  RGAFIVFEGCDRSGKTTQAKKLVDYLNK 34
          RG FI FEG + +GK+TQ + L + L  
Sbjct: 2  RGRFITFEGGEGAGKSTQIRLLAERLRA 29

Length = 213

>gnl|CDD|237574 PRK13976, PRK13976, thymidylate kinase; Provisional

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 10 FIVFEGCDRSGKTTQAKKLVDYLNK 34
          FI FEG D SGKTTQ++ L +YL+ 
Sbjct: 2  FITFEGIDGSGKTTQSRLLAEYLSD 26

Length = 209

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
          I+  G   SGK TQA++L     K  +P          ISTG ++ E +    EL  +A 
Sbjct: 2  ILLLGPPGSGKGTQAERLAK---KYGLPH---------ISTGDLLREEIASGTELGKKAK 49

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PLN02924	220	thymidylate kinase	100.0
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	100.0
KOG3327|consensus	208		100.0
PRK13976	209	thymidylate kinase; Provisional	100.0
PRK13973	213	thymidylate kinase; Provisional	100.0
PRK07933	213	thymidylate kinase; Validated	99.98
PRK13974	212	thymidylate kinase; Provisional	99.97
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.97
PRK00698	205	tmk thymidylate kinase; Validated	99.96
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.96
PRK13975	196	thymidylate kinase; Provisional	99.94
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.94
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.9
PRK13808	333	adenylate kinase; Provisional	99.86
KOG3079|consensus	195		99.85
PRK14532	188	adenylate kinase; Provisional	99.85
PLN02674	244	adenylate kinase	99.85
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.85
PLN02200	234	adenylate kinase family protein	99.85
PRK14531	183	adenylate kinase; Provisional	99.84
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.84
PRK02496	184	adk adenylate kinase; Provisional	99.83
PRK14529	223	adenylate kinase; Provisional	99.83
PRK14527	191	adenylate kinase; Provisional	99.83
PLN02459	261	probable adenylate kinase	99.81
PRK14528	186	adenylate kinase; Provisional	99.8
PRK00279	215	adk adenylate kinase; Reviewed	99.8
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.79
PRK14526	211	adenylate kinase; Provisional	99.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.77
PTZ00088	229	adenylate kinase 1; Provisional	99.77
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.76
PLN02842	505	nucleotide kinase	99.76
PHA03132	580	thymidine kinase; Provisional	99.76
PRK14530	215	adenylate kinase; Provisional	99.74
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.71
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.71
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.67
PRK03731	171	aroL shikimate kinase II; Reviewed	99.64
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.63
PRK06762	166	hypothetical protein; Provisional	99.63
PRK13948	182	shikimate kinase; Provisional	99.62
PRK08233	182	hypothetical protein; Provisional	99.62
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.61
KOG3877|consensus	393		99.61
PRK13946	184	shikimate kinase; Provisional	99.6
PRK13947	171	shikimate kinase; Provisional	99.6
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.59
PRK00131	175	aroK shikimate kinase; Reviewed	99.59
PRK14738	206	gmk guanylate kinase; Provisional	99.58
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.57
PRK05057	172	aroK shikimate kinase I; Reviewed	99.57
PRK03839	180	putative kinase; Provisional	99.56
PRK05541	176	adenylylsulfate kinase; Provisional	99.56
PRK13949	169	shikimate kinase; Provisional	99.56
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.55
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.55
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.55
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.53
KOG3354|consensus	191		99.53
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.52
PRK04040	188	adenylate kinase; Provisional	99.51
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.51
PRK00625	173	shikimate kinase; Provisional	99.5
PRK09825	176	idnK D-gluconate kinase; Provisional	99.49
PLN02199	303	shikimate kinase	99.49
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.47
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.44
PRK06217	183	hypothetical protein; Validated	99.44
PRK01184	184	hypothetical protein; Provisional	99.43
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.43
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.42
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.41
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.41
PRK08356	195	hypothetical protein; Provisional	99.41
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.4
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.4
PRK14737	186	gmk guanylate kinase; Provisional	99.4
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.4
PRK04182	180	cytidylate kinase; Provisional	99.4
PLN02422	232	dephospho-CoA kinase	99.39
KOG3078|consensus	235		99.39
PRK11545	163	gntK gluconate kinase 1; Provisional	99.39
PRK00300	205	gmk guanylate kinase; Provisional	99.39
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.39
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.37
KOG3347|consensus	176		99.36
PHA02530	300	pseT polynucleotide kinase; Provisional	99.36
PTZ00451	244	dephospho-CoA kinase; Provisional	99.35
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.35
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.35
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.35
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.34
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.33
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.32
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.32
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.32
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.29
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	99.29
COG3709	192	Uncharacterized component of phosphonate metabolis	99.29
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	99.29
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.29
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.27
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	99.26
PRK00889	175	adenylylsulfate kinase; Provisional	99.25
PRK05480	209	uridine/cytidine kinase; Provisional	99.25
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.25
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.25
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.23
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	99.22
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.22
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.21
PRK03846	198	adenylylsulfate kinase; Provisional	99.21
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.2
PRK00023	225	cmk cytidylate kinase; Provisional	99.19
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.19
KOG4235|consensus	244		99.18
KOG3220|consensus	225		99.17
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.14
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.13
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.13
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.12
PRK08118	167	topology modulation protein; Reviewed	99.11
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.11
PRK12338	319	hypothetical protein; Provisional	99.11
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.1
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.09
PHA03136	378	thymidine kinase; Provisional	99.09
PRK06696	223	uridine kinase; Validated	99.08
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.07
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.07
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.03
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	99.02
PRK07667	193	uridine kinase; Provisional	99.01
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.98
KOG0635|consensus	207		98.97
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.96
COG0645	170	Predicted kinase [General function prediction only	98.95
PLN02772	398	guanylate kinase	98.95
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.94
PRK06547	172	hypothetical protein; Provisional	98.94
PTZ00301	210	uridine kinase; Provisional	98.92
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	98.9
PRK06761	282	hypothetical protein; Provisional	98.9
PRK07261	171	topology modulation protein; Provisional	98.89
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.86
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.85
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.8
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.78
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.78
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.77
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.76
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.76
KOG3062|consensus	281		98.7
KOG3308|consensus	225		98.68
COG2326	270	Uncharacterized conserved protein [Function unknow	98.66
PRK15453	290	phosphoribulokinase; Provisional	98.65
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.63
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.6
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.6
PHA03134	340	thymidine kinase; Provisional	98.58
PHA03135	343	thymidine kinase; Provisional	98.56
COG3911	183	Predicted ATPase [General function prediction only	98.56
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.52
PHA03138	340	thymidine kinase; Provisional	98.52
COG4639	168	Predicted kinase [General function prediction only	98.51
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	98.5
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.49
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.47
PRK05439	311	pantothenate kinase; Provisional	98.45
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.44
KOG4238|consensus	627		98.4
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.39
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.35
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.33
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.31
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.27
PLN02165	334	adenylate isopentenyltransferase	98.25
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.24
PLN02348	395	phosphoribulokinase	98.24
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.23
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.23
PHA00729	226	NTP-binding motif containing protein	98.19
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.19
KOG0707|consensus	231		98.19
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.16
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.1
PLN02318	656	phosphoribulokinase/uridine kinase	98.09
PRK07429	327	phosphoribulokinase; Provisional	98.05
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.05
PHA03133	368	thymidine kinase; Provisional	98.05
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.03
COG1660	286	Predicted P-loop-containing kinase [General functi	98.01
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.98
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.96
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.91
cd03116	159	MobB Molybdenum is an essential trace element in t	97.9
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.9
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.89
smart00382	148	AAA ATPases associated with a variety of cellular	97.88
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.86
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.85
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.85
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.85
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.82
PF00004	132	AAA: ATPase family associated with various cellula	97.8
PLN02796	347	D-glycerate 3-kinase	97.79
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.78
PRK09169	2316	hypothetical protein; Validated	97.76
PRK14974	336	cell division protein FtsY; Provisional	97.75
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.75
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.75
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.74
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.73
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.73
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.71
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.71
KOG0744|consensus	423		97.71
PLN02840	421	tRNA dimethylallyltransferase	97.69
PLN03046	460	D-glycerate 3-kinase; Provisional	97.68
PRK10416	318	signal recognition particle-docking protein FtsY;	97.68
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.67
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.66
KOG0780|consensus	483		97.66
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.64
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.64
PRK13768	253	GTPase; Provisional	97.64
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.63
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.62
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.62
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.62
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.6
PRK12377	248	putative replication protein; Provisional	97.59
PF13245	76	AAA_19: Part of AAA domain	97.58
PF05729	166	NACHT: NACHT domain	97.55
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.54
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.54
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.54
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.54
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.53
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.52
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.52
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.51
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.51
PRK13695	174	putative NTPase; Provisional	97.5
PRK10867	433	signal recognition particle protein; Provisional	97.49
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.49
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.49
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.49
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.48
KOG1384|consensus	348		97.47
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	97.47
PRK04296	190	thymidine kinase; Provisional	97.47
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.47
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.47
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.47
COG1855	604	ATPase (PilT family) [General function prediction	97.45
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.45
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.44
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.44
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.44
CHL00181	287	cbbX CbbX; Provisional	97.44
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.44
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.43
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	97.43
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.42
cd03114	148	ArgK-like The function of this protein family is u	97.42
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.4
PRK09183	259	transposase/IS protein; Provisional	97.39
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.39
PRK06851	367	hypothetical protein; Provisional	97.37
PLN02748	468	tRNA dimethylallyltransferase	97.37
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.36
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.36
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.34
PRK08084	235	DNA replication initiation factor; Provisional	97.34
KOG1532|consensus	366		97.33
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.33
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.32
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.32
PF13173	128	AAA_14: AAA domain	97.32
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.31
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.31
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.3
PRK06851	367	hypothetical protein; Provisional	97.3
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.29
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.29
COG4240	300	Predicted kinase [General function prediction only	97.29
TIGR00959	428	ffh signal recognition particle protein. This mode	97.28
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.26
cd02034	116	CooC The accessory protein CooC, which contains a	97.26
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.25
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.24
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.24
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.24
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.24
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.24
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.24
PRK06893	229	DNA replication initiation factor; Validated	97.24
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.22
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.22
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.22
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.22
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.22
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.22
PF07726	131	AAA_3: ATPase family associated with various cellu	97.21
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.21
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.21
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.21
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.21
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.21
PRK06526	254	transposase; Provisional	97.21
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.2
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.2
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	97.2
PRK13764	602	ATPase; Provisional	97.2
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.2
PRK08181	269	transposase; Validated	97.2
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.19
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.19
PRK15455	644	PrkA family serine protein kinase; Provisional	97.19
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.18
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.18
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.17
KOG1533|consensus	290		97.17
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.17
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.17
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.17
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.16
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.16
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.15
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.15
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.15
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.15
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.15
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.15
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.15
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.15
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.14
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.14
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.14
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.14
PRK08939	306	primosomal protein DnaI; Reviewed	97.14
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.14
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.13
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.12
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.12
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.12
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.12
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.12
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.12
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.12
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.11
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.11
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.11
cd03246	173	ABCC_Protease_Secretion This family represents the	97.11
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.1
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.1
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.1
KOG2004|consensus	906		97.1
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.1
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.1
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.1
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.1
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.1
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.09
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.09
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.09
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.09
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.09
PRK05973	237	replicative DNA helicase; Provisional	97.08
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.08
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.08
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.07
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.07
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.06
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.06
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.06
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.06
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.06
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.06
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.06
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.06
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.06
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.06
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.06
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.06
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.06
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.05
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.05
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.05
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.05
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.04
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.04
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.04
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.04
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.04
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.04
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.04
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.04
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.04
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.04
PRK12608	380	transcription termination factor Rho; Provisional	97.03
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.03
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.03
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.03
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.03
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.03
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.02
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.02
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.02
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.02
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.01
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.01
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.01
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.01
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	97.01
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.01
PRK10908	222	cell division protein FtsE; Provisional	97.01
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.0
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.99
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.99
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.99
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.99
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.98
PRK10646	153	ADP-binding protein; Provisional	96.98
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.98
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.98
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.98
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.98
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.98
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.98
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.97
PRK08116	268	hypothetical protein; Validated	96.97
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.97
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.96
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.96
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.96
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.96
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.96
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.95
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.95
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.95
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.95
PLN03025	319	replication factor C subunit; Provisional	96.95
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.95
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	96.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.95
PRK06067	234	flagellar accessory protein FlaH; Validated	96.95
PRK07952	244	DNA replication protein DnaC; Validated	96.95
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.95
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.94
KOG1970|consensus	634		96.94
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.94
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.94
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.94
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.94
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.94
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.94
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.94
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.93
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.93
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.93
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.93
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.93
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	96.92
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.92
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.92
COG0802	149	Predicted ATPase or kinase [General function predi	96.92
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.92
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.92
PRK08727	233	hypothetical protein; Validated	96.92
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.91
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.91
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	96.91
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.91
KOG1969|consensus	877		96.91
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.91
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.91
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.91
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	96.91
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.91
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.91
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.91
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.9
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	96.9
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.9

>PLN02924 thymidylate kinase

Probab=100.00  E-value=1.1e-34  Score=230.76  Aligned_cols=194  Identities=48%  Similarity=0.888  Sum_probs=174.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      .++|++|+|+|++||||||+++.|++.+...|+++..+++|..+.+.|+.+++++.....+.+....++|+++|+++...
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999889999767888999999888766778888899999999998888


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.+++..|.+||+                 |||++|+++|+... +.+.+|+..+....+.||++|||++|++++.+|..
T Consensus        93 I~pal~~g~vVI~-----------------DRy~~S~~ayq~~~-g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~  154 (220)
T PLN02924         93 MERKLKSGTTLVV-----------------DRYSYSGVAFSAAK-GLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG  154 (220)
T ss_pred             HHHHHHCCCEEEE-----------------ccchhHHHHHHHhc-CCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence            9999999999999                 99999999998754 77788988787778899999999999999999986


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        165 FGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      .+.++++..++++++++.|..+....+++||++++++++.++|.+.|...+.
T Consensus       155 ~~~~~~E~~~~~~rv~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~l~  206 (220)
T PLN02924        155 YGGERYEKLEFQKKVAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDTVQ  206 (220)
T ss_pred             cCccccccHHHHHHHHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            5556678899999999999999876899999999999999999999987665

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=227.44  Aligned_cols=192  Identities=30%  Similarity=0.461  Sum_probs=171.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc-CCCCHHHHHHHHHhhhhhhh-hH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK-IELPDQAAHLLFSANRWERE-PT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~   84 (227)
                      +|++|+|+|++||||||+++.|++.|...|++|..+++|+ +++.|+.+++++.++ ..+.+.++.++|+++|++++ +.
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~-~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG-GTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999998 599999999998887 67889999999999999975 58


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC---CCCCCCEEEEeecCHHHHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pd~vi~L~~~~e~~~~  161 (227)
                      +.+++..|.+|||                 |||++|+++|++..++.+..|+..+..   ..+.||++|||++||+++.+
T Consensus        81 i~pal~~g~vVI~-----------------DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~  143 (208)
T COG0125          81 IKPALKEGKVVIC-----------------DRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALE  143 (208)
T ss_pred             HHHhhcCCCEEEE-----------------CCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHH
Confidence            9999999999999                 999999999998777899899986643   34499999999999999999


Q ss_pred             hcCCCC---CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        162 RKGFGD---ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       162 R~~~r~---~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      |+.+|+   ++++.  .++++++.+.|..++..   .+++||+++++++|.++|.+.|...+.
T Consensus       144 R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~  206 (208)
T COG0125         144 RIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG  206 (208)
T ss_pred             HHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence            997763   45554  44899999999999876   389999999999999999999988765

>KOG3327|consensus

Probab=100.00  E-value=2.4e-33  Score=209.89  Aligned_cols=203  Identities=48%  Similarity=0.841  Sum_probs=189.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      +.++.+|+++|.++|||||++..|-+.+...+.++...+.|.+..+.|..+..++.+...+++....++|.++|+.+...
T Consensus         2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~   81 (208)
T KOG3327|consen    2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSL   81 (208)
T ss_pred             CCCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHH
Confidence            46799999999999999999999999998777777778889888999999999999988999999999999999999999


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      |.+.+..|.++||                 |||++||.+|..+. |++..|+.+....+++||+++||+++|+.+.+|-.
T Consensus        82 i~e~l~kg~~~iv-----------------DRY~~SGvAyS~AK-gl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rgg  143 (208)
T KOG3327|consen   82 IKEKLAKGTTLIV-----------------DRYSFSGVAYSAAK-GLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGG  143 (208)
T ss_pred             HHHHHhcCCeEEE-----------------ecceecchhhhhhc-CCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcC
Confidence            9999999999999                 99999999999997 89999999999999999999999999999999988


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCcc
Q psy16874        165 FGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLES  225 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~~  225 (227)
                      .|.++++..++++++...|+.+.+.   .|+++|++.+.++|.+.|..+++..+.....++|.+
T Consensus       144 fG~Erye~v~fqekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~~~~~l~~  207 (208)
T KOG3327|consen  144 FGEERYETVAFQEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSEPIEKPLDE  207 (208)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhccCCCCCCccc
Confidence            8888999999999999999998853   899999999999999999999999999999988863

>PRK13976 thymidylate kinase; Provisional

Probab=100.00  E-value=3.2e-31  Score=209.42  Aligned_cols=190  Identities=25%  Similarity=0.310  Sum_probs=160.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh-HH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP-TL   85 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i   85 (227)
                      ++|+|+|++||||||+++.|++.|... | .++..+++|+ +.++++.+++++.....+.+....++|+++|+.+.. .+
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I   79 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-GTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI   79 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-CCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999986 5 5888888897 778899999988764457788888999999999864 68


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC--CCCCCCEEEEeecCHHHHHHhc
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK--GLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+++.+|.+|||                 |||++|+++|++...+.+..|+..+..  ..+.||++|||++|++++.+|+
T Consensus        80 ~p~l~~G~~VI~-----------------DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri  142 (209)
T PRK13976         80 LPALLQGKIVIC-----------------DRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRA  142 (209)
T ss_pred             HHHHHCCCEEEE-----------------CCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHh
Confidence            999999999999                 999999999998666777777765542  3468999999999999999999


Q ss_pred             CCCCCCcc--cHHHHHHHHHHHHHHhhC---CeEEEcC---CCC---HHHHHHHHHHHHHHHhhhc
Q psy16874        164 GFGDERYE--QTDFQRKVAENYEKLKDN---IWIDIDA---DKD---IDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       164 ~~r~~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~---~~s---~~~v~~~I~~~i~~~l~~~  218 (227)
                      ..  +.++  +.++++++.+.|.++...   .+++||+   +++   ++++.++|.++|...++++
T Consensus       143 ~~--~~~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~  206 (209)
T PRK13976        143 DK--NGYEFMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDK  206 (209)
T ss_pred             cc--cchhcccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence            64  3344  589999999999999864   5889998   445   9999999999998888553

>PRK13973 thymidylate kinase; Provisional

Probab=100.00  E-value=5.1e-31  Score=209.60  Aligned_cols=192  Identities=22%  Similarity=0.266  Sum_probs=162.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc--CCCCHHHHHHHHHhhhhhhhh-
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK--IELPDQAAHLLFSANRWEREP-   83 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-   83 (227)
                      +|++|+|+|++||||||+++.|+++|...|+++..+++|+ +.+.++.+++++..+  ..+.+....++|+++|+.+.. 
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~   80 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG-GSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEE   80 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC-CCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999997 677899999887753  346778888999999998864 


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHH
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQ  160 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~  160 (227)
                      .+.+++.+|.+||+                 |||++|+++|++...+.+..|+..+.   ...+.||++|||++|++++.
T Consensus        81 ~i~~~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~  143 (213)
T PRK13973         81 VIRPALARGKIVLC-----------------DRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGL  143 (213)
T ss_pred             HHHHHHHCCCEEEE-----------------cchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHH
Confidence            68999999999999                 99999999999876566656665543   34578999999999999999


Q ss_pred             HhcCCCC-----CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        161 RRKGFGD-----ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       161 ~R~~~r~-----~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      +|+..|.     +.++  +.++++++.+.|....+.   .+++||++++++++.++|.+.+...+.
T Consensus       144 ~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        144 ERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             HHHHhccCCCccCchhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence            9986653     2444  367888899999888752   688999999999999999999987765

>PRK07933 thymidylate kinase; Validated

Probab=99.98  E-value=7.4e-31  Score=208.33  Aligned_cols=186  Identities=25%  Similarity=0.363  Sum_probs=154.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR-TISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      |+|+|+|++||||||+++.|+++|...|+++..+++|.. +++.++.+++++....   ........++|+++|+.+...
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~   80 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE   80 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHH
Confidence            589999999999999999999999999999999999852 5677888888876431   235677788999999998888


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCC-----CChhhhhcccC---CCCCCCEEEEeecCH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG-----MDISWCFQPEK---GLPKPDAVLLFKLNE  156 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~pd~vi~L~~~~  156 (227)
                      +.+++.+|.+||+                 |||++|+++|+....+     ....|+..+..   ..+.||++|||++||
T Consensus        81 I~p~l~~g~~VI~-----------------DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~  143 (213)
T PRK07933         81 LAGLLAAHDVVIL-----------------DRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPV  143 (213)
T ss_pred             HHHHHhCCCEEEE-----------------CCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCH
Confidence            9999999999999                 9999999999865422     23456655542   456899999999999


Q ss_pred             HHHHHhcCCCC--------CCccc-HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        157 EALQRRKGFGD--------ERYEQ-TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       157 e~~~~R~~~r~--------~~~~~-~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      +++.+|+..|+        +.++. .++++++.+.|..+...    .+++||++++++++.++|.+.|
T Consensus       144 e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        144 ELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             HHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            99999987653        34554 78999999999998753    7899999999999999998875

>PRK13974 thymidylate kinase; Provisional

Probab=99.97  E-value=1.9e-28  Score=194.70  Aligned_cols=193  Identities=26%  Similarity=0.406  Sum_probs=160.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-----CeEEeeCCCCCCCchHHHHHHHhhc--C-CCCHHHHHHHHHhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-----PSQFVNFPDRTISTGHIIDEYLRKK--I-ELPDQAAHLLFSANR   78 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~   78 (227)
                      +|.+|+|+|++||||||+++.|++.+...|.     .+..+++|. +.+.|+.+++++...  . ...+....++|+++|
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr   80 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTLLGKSLRELLLDTSKDNSPSPLAELLLYAADR   80 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHH
Confidence            4889999999999999999999999987664     566688886 788999999998642  2 345677888999999


Q ss_pred             hhhhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeec
Q psy16874         79 WEREP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKL  154 (227)
Q Consensus        79 ~~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~  154 (227)
                      ++++. .+.+.+..|.+||+                 |||++|+++|.+..++.+.+|+..+.   ...+.||++|||++
T Consensus        81 ~~~~~~~i~~~l~~g~~Vi~-----------------DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~  143 (212)
T PRK13974         81 AQHVSKIIRPALENGDWVIS-----------------DRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEI  143 (212)
T ss_pred             HHHHHHHHHHHHHCCCEEEE-----------------cCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeC
Confidence            99876 57899999999999                 99999999998876677777776653   23458999999999


Q ss_pred             CHHHHHHhcCCCC-CCccc--HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        155 NEEALQRRKGFGD-ERYEQ--TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       155 ~~e~~~~R~~~r~-~~~~~--~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      |++++.+|+..|. +.++.  .++++++...|+.+... .+++||++++++++.++|.+.|.+.+..
T Consensus       144 ~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~  210 (212)
T PRK13974        144 SVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSN  210 (212)
T ss_pred             CHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999987654 33443  67888999999888765 7899999999999999999999876654

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.97  E-value=2.2e-29  Score=196.28  Aligned_cols=177  Identities=32%  Similarity=0.508  Sum_probs=148.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHHHHHHc
Q psy16874         13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLTKLIEQ   91 (227)
Q Consensus        13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~   91 (227)
                      |+|++||||||+++.|+++|...++.+.....| .+.+.|+.+++++.+..........++|.+++..+. ..+.+++.+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~-~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~   79 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPP-GSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKR   79 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESS-TSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCC-CCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            799999999999999999999999985555545 478889999999987777788889999999996654 588999999


Q ss_pred             CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC--CCCEEEEeecCHHHHHHhcCCCCC-
Q psy16874         92 GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP--KPDAVLLFKLNEEALQRRKGFGDE-  168 (227)
Q Consensus        92 ~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~L~~~~e~~~~R~~~r~~-  168 (227)
                      |.+|||                 |||++|+++|+....+.+..|+..+....+  .||++|||++||+++.+|+..|+. 
T Consensus        80 g~~VI~-----------------DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~  142 (186)
T PF02223_consen   80 GKIVIC-----------------DRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEK  142 (186)
T ss_dssp             TSEEEE-----------------ESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSST
T ss_pred             CCEEEE-----------------echhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCcc
Confidence            999999                 999999999998864466677766654433  999999999999999999977655 


Q ss_pred             ---CcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHH
Q psy16874        169 ---RYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIV  207 (227)
Q Consensus       169 ---~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I  207 (227)
                         ..+..++++++++.|.++.+  ++|++||++.+++++.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  143 DDEEEEDLEYLRRVREAYLELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence               23348899999999999985  3899999999999998876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.96  E-value=5e-28  Score=191.21  Aligned_cols=191  Identities=26%  Similarity=0.373  Sum_probs=154.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhh-hH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWERE-PT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~   84 (227)
                      ++++|+|+|++||||||+++.|++.++..|..+...++|. +.+.++.++..+.. ......+...+++.++++... ..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV   80 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999998887777788886 56778888887764 334566677777788887765 46


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC---CCCCCCEEEEeecCHHHHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pd~vi~L~~~~e~~~~  161 (227)
                      +.+.+.+|.+||+                 |||+++++++.....+.+..|+..+..   ..+.||++|||++|++++.+
T Consensus        81 i~~~l~~g~~vi~-----------------DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~  143 (205)
T PRK00698         81 IKPALARGKWVIS-----------------DRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLA  143 (205)
T ss_pred             HHHHHHCCCEEEE-----------------CCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHH
Confidence            7778888999999                 999999999987655566677765542   33789999999999999999


Q ss_pred             hcCCCC--CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        162 RKGFGD--ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       162 R~~~r~--~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      |+..|+  +.++  ..++++++.+.|+.+...   .+++||++++++++.++|.+.|...+
T Consensus       144 Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        144 RIRARGELDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             HHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            998765  2332  357888898889888743   68999999999999999999998765

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.96  E-value=3.7e-27  Score=185.03  Aligned_cols=183  Identities=31%  Similarity=0.457  Sum_probs=146.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh--cCCCCHHHHHHHHHhhhhhhh-h
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK--KIELPDQAAHLLFSANRWERE-P   83 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~   83 (227)
                      +|++|+|+|+|||||||+++.|+++++..|+.+..+..|. +.+.++.+++++..  ...+.+....++|.++|.... .
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~   80 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG-GTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED   80 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999887777775 66778888887543  234555666777888887654 4


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC--CCCEEEEeecCHHHHHH
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP--KPDAVLLFKLNEEALQR  161 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~vi~L~~~~e~~~~  161 (227)
                      .+.+.+.++.+||+                 |||++++++|....++.+..|+..+....+  .||++|||++|++++.+
T Consensus        81 ~i~~~l~~~~~VI~-----------------DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~  143 (195)
T TIGR00041        81 KIKPALAEGKLVIS-----------------DRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALE  143 (195)
T ss_pred             HHHHHHhCCCEEEE-----------------CCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHH
Confidence            67788888999999                 999999999976544666677766554333  49999999999999999


Q ss_pred             hcCCCCCC----cccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHH
Q psy16874        162 RKGFGDER----YEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIV  207 (227)
Q Consensus       162 R~~~r~~~----~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I  207 (227)
                      |+..|+..    .+..++++++.+.|.++.+.  ++++||++++++++.++|
T Consensus       144 R~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       144 RLRKRGELDREEFEKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            98766431    33477889999999999873  899999999999988764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13975 thymidylate kinase; Provisional

Probab=99.94  E-value=1.7e-25  Score=175.72  Aligned_cols=183  Identities=32%  Similarity=0.486  Sum_probs=145.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      +++|+|+|++||||||+++.|++.++..     ...+|. +...|..+++++... ...+....++|.++++.+++.+.+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~-----~~~~~~-~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~~   74 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF-----WTCEPT-DGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIEE   74 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC-----eeECCC-CChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999752     223353 556788888887654 556777788888899888777777


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+.. ..|++                 |||++|+++|+... +....|+..+....+.||++|||++|++++.+|+..|+
T Consensus        75 ~~~~-~~vi~-----------------DRy~~S~~a~~~~~-g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~  135 (196)
T PRK13975         75 DLKK-RDVVC-----------------DRYVYSSIAYQSVQ-GIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD  135 (196)
T ss_pred             HHcC-CEEEE-----------------ECchhHHHHHhccc-CCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence            7655 66888                 99999999998765 66667765555555689999999999999999998764


Q ss_pred             -CCcccHHHHHHHHHHHHHHhh------C-CeEEEcCC-CCHHHHHHHHHHHHHHHhh
Q psy16874        168 -ERYEQTDFQRKVAENYEKLKD------N-IWIDIDAD-KDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~~------~-~~~~Id~~-~s~~~v~~~I~~~i~~~l~  216 (227)
                       +.+++.++++++.+.|.++..      . .+++||++ +++++++++|.+.|...+.
T Consensus       136 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~  193 (196)
T PRK13975        136 KEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIP  193 (196)
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence             335567888889988888764      1 58999986 8999999999998876554

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.94  E-value=4.2e-25  Score=173.38  Aligned_cols=186  Identities=26%  Similarity=0.350  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC--CCCHHHHHHHHHhhhhhhhh-HH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI--ELPDQAAHLLFSANRWEREP-TL   85 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~i   85 (227)
                      ++|+|+|++||||||+++.|++.+...|+.+..+.+|. ....++.+++++....  .+.......++.+++..... .+
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   79 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG-GTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI   79 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999998888886 4456788888877542  34556666677777777654 56


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhh---cccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCF---QPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+.+..+..|++                 |||++++.++.....+....|+.   .+....+.||++|||++|++++.+|
T Consensus        80 ~~~~~~~~~vi~-----------------DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R  142 (200)
T cd01672          80 KPALARGKIVLS-----------------DRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLAR  142 (200)
T ss_pred             HHHHhCCCEEEE-----------------CCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence            677788999999                 99999999998665333333333   3344556899999999999999999


Q ss_pred             cCCCCCCc----ccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        163 KGFGDERY----EQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       163 ~~~r~~~~----~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +.+|++..    ...++++++...|......   ++++||++.+++++.++|.+.|.
T Consensus       143 ~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         143 IEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             HHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence            98765432    2377888999889887753   68999999999999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.90  E-value=5.1e-23  Score=164.34  Aligned_cols=180  Identities=17%  Similarity=0.215  Sum_probs=125.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-----EeeCCCCCCCchH------HHHHHHhhcC---CCCHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-----FVNFPDRTISTGH------IIDEYLRKKI---ELPDQAAHLLFS   75 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~   75 (227)
                      +|+|+|++||||||+++.|+++++..+++..     ...+|. +...++      .++.++.++.   .+.......++ 
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~-   78 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGD-GKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY-   78 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhcccccccc-ccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH-
Confidence            5899999999999999999999976544332     123332 233333      3666776544   34444444444 


Q ss_pred             hhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc------CCCChhhhhcc----cCCCC
Q psy16874         76 ANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK------EGMDISWCFQP----EKGLP  144 (227)
Q Consensus        76 ~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~  144 (227)
                      ++|..+. +.+.+.+..|..||+                 |||++|+++|+...      .+....|+..+    ....+
T Consensus        79 ~~R~~~~~~~i~~~l~~g~~VI~-----------------DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~  141 (219)
T cd02030          79 SSRLLQYSDALEHLLSTGQGVVL-----------------ERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELL  141 (219)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEE-----------------ecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccC
Confidence            6777764 466777888888999                 99999999997421      12223444333    23457


Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHh-----hC-CeEEEcCC--CCHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLK-----DN-IWIDIDAD--KDIDTLGLIVK  208 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~-----~~-~~~~Id~~--~s~~~v~~~I~  208 (227)
                      .||++|||++|++++.+|+..|+...+   +.++++++.+.|+.+.     .. ++++||++  .+.+++..+|.
T Consensus       142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~  216 (219)
T cd02030         142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIE  216 (219)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHH
Confidence            899999999999999999977654432   3789999999998874     12 89999988  77777766654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK13808 adenylate kinase; Provisional

Probab=99.86  E-value=1e-20  Score=157.61  Aligned_cols=173  Identities=18%  Similarity=0.197  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      -|+|.|+|||||||++..|++.++..+++++. +++ ...+.+.+..+.+++.++..++++...           ..+.+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~-----------~li~e   70 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVV-----------GIISD   70 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHH-----------HHHHH
Confidence            48999999999999999999999999998866 543 223566788888888888888887765           34444


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      .+...              .+.+|||+|     +||++..|.    ..+..+ ......||++|+|++|++++.+|+..|
T Consensus        71 ~l~~~--------------~~~~G~ILD-----GFPRt~~QA----~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R  127 (333)
T PRK13808         71 RIEQP--------------DAANGFILD-----GFPRTVPQA----EALDALLKDKQLKLDAVVELRVNEGALLARVETR  127 (333)
T ss_pred             HHhcc--------------cccCCEEEe-----CCCCCHHHH----HHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence            44331              235678889     888887763    333222 233458999999999999999999764


Q ss_pred             C---------CCcc-cHH-HHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        167 D---------ERYE-QTD-FQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       167 ~---------~~~~-~~~-~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .         .+.+ +.+ +.+++ ..|+...       ..  .++.||+++++++|+++|...|..++..
T Consensus       128 ~~~~~~rg~~~R~DD~~E~i~kRL-~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~  197 (333)
T PRK13808        128 VAEMRARGEEVRADDTPEVLAKRL-ASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA  197 (333)
T ss_pred             cccccccCCccCCCCCHHHHHHHH-HHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            1         1222 233 33444 5555542       12  5899999999999999999999877654

>KOG3079|consensus

Probab=99.85  E-value=4.9e-21  Score=144.11  Aligned_cols=172  Identities=20%  Similarity=0.269  Sum_probs=122.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CC-CCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DR-TISTGHIIDEYLRKKIELPDQAAHLLFSANRWER   81 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (227)
                      ...+++|+|.|.|||||.|+|..+.+.+++.|++++. ++.. .. ++..|..+++++.+|..+|.+...          
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~----------   74 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITL----------   74 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHH----------
Confidence            3568899999999999999999999999999999976 5542 22 778899999999999999987766          


Q ss_pred             hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCHHHHH
Q psy16874         82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNEEALQ  160 (227)
Q Consensus        82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~e~~~  160 (227)
                       ..+..++.+.              ...++|++|     |||++..+.       ..|.+... .|++++|++|+.+++.
T Consensus        75 -~LL~~am~~~--------------~~~~~fLID-----GyPR~~~q~-------~~fe~~i~~~~~fvl~fdc~ee~~l  127 (195)
T KOG3079|consen   75 -SLLEEAMRSS--------------GDSNGFLID-----GYPRNVDQL-------VEFERKIQGDPDFVLFFDCPEETML  127 (195)
T ss_pred             -HHHHHHHHhc--------------CCCCeEEec-----CCCCChHHH-------HHHHHHhcCCCCEEEEEeCCHHHHH
Confidence             3344443321              111224447     999877662       22333333 6899999999999999


Q ss_pred             HhcCCCCCC---cc-cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        161 RRKGFGDER---YE-QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       161 ~R~~~r~~~---~~-~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      +|+..|+..   .. +.+..+...+.|.+..       +.  .++.||+++++++|+.++...++.
T Consensus       128 ~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  128 KRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            999655322   22 2333333333333322       22  788999999999999999998864

>PRK14532 adenylate kinase; Provisional

Probab=99.85  E-value=8.8e-21  Score=148.04  Aligned_cols=169  Identities=16%  Similarity=0.161  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      .|+|.|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++....           ..+..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~   70 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVI-----------ALIEE   70 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHH-----------HHHHH
Confidence            48999999999999999999999998888855 5442 12456677788888888877776554           23333


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      .+...              ..++|+|+|     +||++..++    ..+.. +......||++|+|++|++++.+|+..|
T Consensus        71 ~~~~~--------------~~~~g~vld-----g~pr~~~q~----~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R  127 (188)
T PRK14532         71 RLPEA--------------EAAGGAIFD-----GFPRTVAQA----EALDKMLASRGQKIDVVIRLKVDDEALIERIVKR  127 (188)
T ss_pred             HHhCc--------------CccCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            33211              235667779     777766652    22222 2233457999999999999999999765


Q ss_pred             C---CCcc--cHHHHHHHHHHHHHHh-------h-CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        167 D---ERYE--QTDFQRKVAENYEKLK-------D-NIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       167 ~---~~~~--~~~~~~~~~~~~~~~~-------~-~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .   ++.+  ...+.+++...|+...       . +.++.||+++++++++++|.+.|.
T Consensus       128 ~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        128 FEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             cCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            2   2232  2455666666554432       1 158899999999999999998875

>PLN02674 adenylate kinase

Probab=99.85  E-value=9.9e-21  Score=152.00  Aligned_cols=172  Identities=16%  Similarity=0.152  Sum_probs=123.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +.++.|+|.|+|||||||+++.|+++++..|++++. +++. ..+++.|..+++++..|..+++....           .
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~-----------~   97 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G   97 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHH-----------H
Confidence            445779999999999999999999999999999876 5442 23667888899999999999997766           4


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+.+.+...              .+.+|||+|     |||++..++    ..+..+ ......||.+|+|++|.+++.+|
T Consensus        98 lv~~~l~~~--------------~~~~g~ilD-----GfPRt~~Qa----~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R  154 (244)
T PLN02674         98 IIDEAMKKP--------------SCQKGFILD-----GFPRTVVQA----QKLDEMLAKQGAKIDKVLNFAIDDAILEER  154 (244)
T ss_pred             HHHHHHhCc--------------CcCCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            444454432              345788889     999887773    333222 22334799999999999999999


Q ss_pred             cCCCC------C------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHH
Q psy16874        163 KGFGD------E------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDT  202 (227)
Q Consensus       163 ~~~r~------~------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~  202 (227)
                      +..|.      .                        +.. +.+..++-.+.|.....         +.++.||+++++++
T Consensus       155 l~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~e  234 (244)
T PLN02674        155 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKE  234 (244)
T ss_pred             HhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHH
Confidence            86541      0                        111 13333333334433321         15899999999999


Q ss_pred             HHHHHHHHH
Q psy16874        203 LGLIVKDIV  211 (227)
Q Consensus       203 v~~~I~~~i  211 (227)
                      |+++|..+|
T Consensus       235 V~~~i~~~l  243 (244)
T PLN02674        235 VTAEVQKAL  243 (244)
T ss_pred             HHHHHHHHh
Confidence            999998775

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.85  E-value=1.5e-20  Score=145.95  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC-CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD-RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      +|+|+|+|||||||+|+.|+++++..++++.. +++.. .+.+.+..+++++.++..+++....           ..+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ll~~   69 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV-----------KLLKN   69 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHH-----------HHHHH
Confidence            48999999999999999999999988888744 55431 2455677788888888877776654           23333


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+...              . .++||+|     ++|++..+.    ..+..+......||++|+|++|++++.+|+..|.
T Consensus        70 ~~~~~--------------~-~~~~vlD-----g~p~~~~q~----~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~  125 (183)
T TIGR01359        70 AIQAD--------------G-SKKFLID-----GFPRNEENL----EAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRG  125 (183)
T ss_pred             HHhcc--------------C-CCcEEEe-----CCCCCHHHH----HHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCC
Confidence            33221              1 3345558     666554431    2222222233479999999999999999997764


Q ss_pred             C---Ccc-cHHHHHHHHHHHHHHh--------hC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        168 E---RYE-QTDFQRKVAENYEKLK--------DN-IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       168 ~---~~~-~~~~~~~~~~~~~~~~--------~~-~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .   +.+ +.+.+++....|....        .. .+++||+++++++++++|.+++
T Consensus       126 ~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       126 QSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence            2   122 2444444444554432        12 5899999999999999988765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.85  E-value=3e-20  Score=149.44  Aligned_cols=177  Identities=18%  Similarity=0.168  Sum_probs=118.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +.+++|+|.|+|||||||+|+.|++.++..++++.. +++. ....+.+..+.+++..+..+++....           .
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~-----------~  109 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTV-----------K  109 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHH-----------H
Confidence            356789999999999999999999999988888755 4432 22345566677777777777775544           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+...+...               ..+|||+|     ++|+...++    ..+..+.  ...||++|+|++|++++.+|+
T Consensus       110 ~l~~~l~~~---------------~~~~~ILD-----G~Prt~~q~----~~l~~~~--~~~pd~vi~Ld~~~e~~~~Rl  163 (234)
T PLN02200        110 LIQKEMESS---------------DNNKFLID-----GFPRTEENR----IAFERII--GAEPNVVLFFDCPEEEMVKRV  163 (234)
T ss_pred             HHHHHHhcC---------------CCCeEEec-----CCcccHHHH----HHHHHHh--ccCCCEEEEEECCHHHHHHHH
Confidence            233233211               12456668     666554431    1121111  236999999999999999999


Q ss_pred             CCCC-CCcc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874        164 GFGD-ERYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ  219 (227)
Q Consensus       164 ~~r~-~~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~  219 (227)
                      ..|. .+.+ +.+.+++..+.|.....         +.++.||+++++++|++.|.+.+...++-+.
T Consensus       164 ~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~~~  230 (234)
T PLN02200        164 LNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAMKE  230 (234)
T ss_pred             HcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCCccc
Confidence            7663 2333 34555555555554421         1589999999999999999999987765443

>PRK14531 adenylate kinase; Provisional

Probab=99.84  E-value=6.7e-20  Score=142.48  Aligned_cols=167  Identities=16%  Similarity=0.162  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      .|+|+|+|||||||+++.|++.++..++++.. +++. ..+.+.+..++.++..|..+++.....           .+..
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~-----------~~~~   72 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLA-----------IVES   72 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHH-----------HHHH
Confidence            59999999999999999999999999998855 5432 125567777888888887777766552           2222


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      .+..               ...+|+|+|     +||++..++    ..+..+ ......|+.+|+|++|++++.+|+..|
T Consensus        73 ~l~~---------------~~~~g~ilD-----Gfpr~~~q~----~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R  128 (183)
T PRK14531         73 QLKA---------------LNSGGWLLD-----GFPRTVAQA----EALEPLLEELKQPIEAVVLLELDDAVLIERLLAR  128 (183)
T ss_pred             HHhh---------------ccCCcEEEe-----CCCCCHHHH----HHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC
Confidence            2221               113456668     777766552    212221 222336789999999999999999765


Q ss_pred             CCCcccHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        167 DERYEQTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      +..-.+.+.+..-.+.|+....         +.++.||+++++++|+.+|.+.|
T Consensus       129 ~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        129 GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            3221122222222222222211         16899999999999999998765

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.84  E-value=4.7e-20  Score=144.49  Aligned_cols=166  Identities=23%  Similarity=0.281  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR-TISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      +|+|+|++||||||+++.|+++++.     ..+.+|.. ....+..++.++.+... ........+..+|+.+.......
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~-----~~~~Ep~~~~~~~~~~l~~~~~~~~~-~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGY-----EVVPEPVEPDVEGNPFLEKFYEDPKR-WAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC-----ccccccccccCCCCCCHHHHHhCHHh-ccHHHHHHHHHHHHHHHHHHHhh
Confidence            4899999999999999999998632     33455531 01112335566654322 22233444556677665433222


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc--CC-C---Chhhh----hcccCCCCCCCEEEEeecCHHH
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK--EG-M---DISWC----FQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~--~~-~---~~~~~----~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                      +..+.+||+                 |||++|.+++....  .+ .   +..++    ..+....+.||++|||++|+++
T Consensus        75 ~~~~~~vI~-----------------DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~  137 (193)
T cd01673          75 LSTGQGVIL-----------------ERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPET  137 (193)
T ss_pred             cccCCceEE-----------------EcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHH
Confidence            567888988                 99999998776432  11 1   12222    2223345789999999999999


Q ss_pred             HHHhcCCCCCCcc---cHHHHHHHHHHHHHHhhC------CeEEEcCCC
Q psy16874        159 LQRRKGFGDERYE---QTDFQRKVAENYEKLKDN------IWIDIDADK  198 (227)
Q Consensus       159 ~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~~------~~~~Id~~~  198 (227)
                      +.+|+.+|++..+   +.++++.+...|+.+...      ++++||+++
T Consensus       138 ~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~  186 (193)
T cd01673         138 CLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANE  186 (193)
T ss_pred             HHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCc
Confidence            9999987654433   378999999999988752      899999985

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK02496 adk adenylate kinase; Provisional

Probab=99.83  E-value=7.1e-20  Score=142.45  Aligned_cols=169  Identities=17%  Similarity=0.208  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      +.|+|.|+|||||||+++.|++.++..+++++. +++ ...+.+.+..++.++.++..+++....           ..+.
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~-----------~~l~   70 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL-----------DLVQ   70 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHH-----------HHHH
Confidence            458999999999999999999999887776643 332 112455566677777777777776544           3344


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+.+.              .+..|||+|     |||++..+.    ..+..+. .....|+++|+|++|++++.+|+..
T Consensus        71 ~~l~~~--------------~~~~g~vld-----GfPr~~~q~----~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~  127 (184)
T PRK02496         71 ERLQQP--------------DAANGWILD-----GFPRKVTQA----AFLDELLQEIGQSGERVVNLDVPDDVVVERLLA  127 (184)
T ss_pred             HHHhCc--------------CccCCEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhc
Confidence            443321              223567778     787765542    2222221 2234689999999999999999987


Q ss_pred             CCCCcccHHHHHHHHHHHHH-------HhhC--CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEK-------LKDN--IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      |+......+.+++..+.|..       ....  .++.||+++++++|+++|...|
T Consensus       128 R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        128 RGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            65433345666666666665       2222  5899999999999999998776

>PRK14529 adenylate kinase; Provisional

Probab=99.83  E-value=2.7e-19  Score=142.10  Aligned_cols=167  Identities=20%  Similarity=0.212  Sum_probs=119.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      .|+|+|+|||||||+++.|++.++..++++.. +++. ..+.+.+..+++++.++..+++....           ..+..
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~-----------~lv~~   70 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITI-----------PMILE   70 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHH-----------HHHHH
Confidence            48999999999999999999999999998866 5552 33678889999999999988887766           44555


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      .+...              . .+|||+|     |||++..|+    ..+..+ ......||.+|+|++|.+++.+|+..|
T Consensus        71 ~l~~~--------------~-~~g~iLD-----GfPRt~~Qa----~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R  126 (223)
T PRK14529         71 TLKQD--------------G-KNGWLLD-----GFPRNKVQA----EKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR  126 (223)
T ss_pred             HHhcc--------------C-CCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence            55432              2 5677888     999998874    333222 223357999999999999999998654


Q ss_pred             C------C--------------------------Cccc--HHHHHHHHHHHHHH----------hh-------CCeEEEc
Q psy16874        167 D------E--------------------------RYEQ--TDFQRKVAENYEKL----------KD-------NIWIDID  195 (227)
Q Consensus       167 ~------~--------------------------~~~~--~~~~~~~~~~~~~~----------~~-------~~~~~Id  195 (227)
                      .      .                          +..+  .+..++-.+.|.+.          ..       +.++.||
T Consensus       127 ~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id  206 (223)
T PRK14529        127 RLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELD  206 (223)
T ss_pred             ccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEE
Confidence            1      0                          1111  22333333334331          11       2589999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy16874        196 ADKDIDTLGLIVKDIV  211 (227)
Q Consensus       196 ~~~s~~~v~~~I~~~i  211 (227)
                      +++++++|++.|.+.|
T Consensus       207 ~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        207 GEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998875

>PRK14527 adenylate kinase; Provisional

Probab=99.83  E-value=3.3e-19  Score=139.50  Aligned_cols=174  Identities=17%  Similarity=0.138  Sum_probs=116.2

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      |..  ++|++|+|.|+|||||||+++.|++.++..+++++. ++. ...+.+.+..++.++.++..+++....       
T Consensus         1 ~~~--~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~-------   71 (191)
T PRK14527          1 MTQ--TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL-------   71 (191)
T ss_pred             CCC--CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHH-------
Confidence            445  678999999999999999999999999999998855 332 122455666777777777776765433       


Q ss_pred             hhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCEEEEeecCHH
Q psy16874         79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDAVLLFKLNEE  157 (227)
Q Consensus        79 ~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~vi~L~~~~e  157 (227)
                          ..+.+.+...               ...++|+|     +||++..++    .++..+. .....++.+|+|++|++
T Consensus        72 ----~l~~~~l~~~---------------~~~~~VlD-----Gfpr~~~q~----~~~~~~~~~~g~~~~~vi~l~~~~~  123 (191)
T PRK14527         72 ----ALIRDELAGM---------------EPVRVIFD-----GFPRTLAQA----EALDRLLEELGARLLAVVLLEVPDE  123 (191)
T ss_pred             ----HHHHHHHhcC---------------CCCcEEEc-----CCCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHH
Confidence                2333333321               11345568     777655442    2232222 23346888999999999


Q ss_pred             HHHHhcCCCCC---Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        158 ALQRRKGFGDE---RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       158 ~~~~R~~~r~~---~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      ++.+|+..|..   +.+ +.+.+.+..+.|.....         +.++.||+++++++|+++|...|
T Consensus       124 ~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        124 ELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            99999977642   222 24444444445544432         15899999999999999998765

>PLN02459 probable adenylate kinase

Probab=99.81  E-value=3.1e-19  Score=144.09  Aligned_cols=170  Identities=19%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++.|+|.|+|||||||+|+.|++.++..++++.. +++ ...+++.|..++.++.+|..+++....           ..+
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~-----------~ll   97 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIF-----------SLL   97 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHH-----------HHH
Confidence            4678889999999999999999999999999866 443 223667888999999999999998776           344


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+.+..            ....+|||+|     |||++..|+    ..+..    ...++.+|+|++|.+++.+|+..
T Consensus        98 ~~~l~~~~------------~~~~~g~iLD-----GFPRt~~Qa----~~Le~----~~~id~Vi~L~v~d~~l~~Rl~g  152 (261)
T PLN02459         98 SKRLEAGE------------EEGESGFILD-----GFPRTVRQA----EILEG----VTDIDLVVNLKLREEVLVEKCLG  152 (261)
T ss_pred             HHHHhccc------------ccCCceEEEe-----CCCCCHHHH----HHHHh----cCCCCEEEEEECCHHHHHHHhhc
Confidence            44443310            1235677889     999988773    22321    23689999999999999999975


Q ss_pred             CC------C-----------------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEE
Q psy16874        166 GD------E-----------------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDI  194 (227)
Q Consensus       166 r~------~-----------------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~I  194 (227)
                      |.      .                                   +.. +.+..++-.+.|.+...         ..++.|
T Consensus       153 R~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~i  232 (261)
T PLN02459        153 RRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEF  232 (261)
T ss_pred             cccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEE
Confidence            42      0                                   001 13333333334433322         168999


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q psy16874        195 DADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       195 d~~~s~~~v~~~I~~~i~~  213 (227)
                      |+++++++|+++|...|..
T Consensus       233 d~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        233 ELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             eCCCCHHHHHHHHHHHhch
Confidence            9999999999999999863

>PRK14528 adenylate kinase; Provisional

Probab=99.80  E-value=7.5e-19  Score=136.86  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      +.|+|.|+|||||||+++.|++.++..+++++. ++.. ..+.+++..++.++..+..+++....           ..+.
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~-----------~~~~   70 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVI-----------GIIK   70 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHH-----------HHHH
Confidence            358999999999999999999999988887765 3331 22456677778888888777776443           3333


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      +.+...              ...+|||+|     ++|++..+.    ..+..+ ......||.+|+|++|++++.+|+..
T Consensus        71 ~~l~~~--------------~~~~g~viD-----G~Pr~~~qa----~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~  127 (186)
T PRK14528         71 DRIREA--------------DCKNGFLLD-----GFPRTVEQA----DALDALLKNEGKSIDKAINLEVPDGELLKRLLG  127 (186)
T ss_pred             HHHhCc--------------CccCcEEEe-----CCCCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhc
Confidence            343321              123567778     777766552    223222 22345799999999999999999976


Q ss_pred             CC---CCcc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHHHHH
Q psy16874        166 GD---ERYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIVKDI  210 (227)
Q Consensus       166 r~---~~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I~~~  210 (227)
                      |.   .+.. +.+.+.+-.+.|.....         +.++.||+++++++|++.|...
T Consensus       128 R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        128 RAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             CccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            52   1111 23333322223333221         1699999999999999988765

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.80  E-value=1e-18  Score=139.21  Aligned_cols=170  Identities=19%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      .|+|.|+|||||||+++.|++.++..++++.. +++ ...+.+.+..+++++.++..+++....           ..+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~-----------~~i~~   70 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI-----------GLVKE   70 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHH-----------HHHHH
Confidence            59999999999999999999999998888755 443 223456777888888888777776654           34444


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      .+...              .+.+|||+|     +||++..++    ..+.++ ......|+.+|+|++|.+++.+|+..|
T Consensus        71 ~l~~~--------------~~~~g~VlD-----GfPr~~~qa----~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R  127 (215)
T PRK00279         71 RLAQP--------------DCKNGFLLD-----GFPRTIPQA----EALDEMLKELGIKLDAVIEIDVPDEELVERLSGR  127 (215)
T ss_pred             HHhcc--------------CccCCEEEe-----cCCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCC
Confidence            44331              233477779     777665542    222222 222346889999999999999999765


Q ss_pred             CC------------------------------Ccc-cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHH
Q psy16874        167 DE------------------------------RYE-QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLI  206 (227)
Q Consensus       167 ~~------------------------------~~~-~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~  206 (227)
                      .-                              +.. +.+.+++-...|....       ..  .++.||+++++++|+++
T Consensus       128 ~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~  207 (215)
T PRK00279        128 RICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFAD  207 (215)
T ss_pred             cccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHH
Confidence            20                              011 1222222222232221       11  58999999999999999


Q ss_pred             HHHHHHH
Q psy16874        207 VKDIVID  213 (227)
Q Consensus       207 I~~~i~~  213 (227)
                      |.+.|..
T Consensus       208 i~~~l~~  214 (215)
T PRK00279        208 ILKALGK  214 (215)
T ss_pred             HHHHHhc
Confidence            9998863

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.79  E-value=2.3e-18  Score=134.11  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=105.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      .++|+|+|+|||||||+++.|++.++..+++++. ++.. ....+.+..++.++.++..++........       ...+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~   75 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLL-------KDAM   75 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHH
Confidence            5689999999999999999999999776666533 2221 11334455566666666555544332111       0223


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .+.+..+..+|+                 |     ++++...+       ...+......|+++|+|++|++++.+|+..
T Consensus        76 ~~~~~~~~~~i~-----------------d-----g~~~~~~q-------~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~  126 (188)
T TIGR01360        76 VAALGTSKGFLI-----------------D-----GYPREVKQ-------GEEFERRIGPPTLVLYFDCSEDTMVKRLLK  126 (188)
T ss_pred             HcccCcCCeEEE-----------------e-----CCCCCHHH-------HHHHHHcCCCCCEEEEEECCHHHHHHHHHc
Confidence            223334444444                 8     44443222       111222334699999999999999999976


Q ss_pred             CCC---Cccc--HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        166 GDE---RYEQ--TDFQRKVAENYEKLK------D--NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       166 r~~---~~~~--~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      |+.   +.++  ..+.+++...|+...      .  +.++.||+++++++++++|...|+.
T Consensus       127 R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       127 RAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            542   2222  345555555443221      1  1678999999999999999998863

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14526 adenylate kinase; Provisional

Probab=99.78  E-value=3.3e-18  Score=135.43  Aligned_cols=166  Identities=22%  Similarity=0.202  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      .|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++.++..+++....           ..+.+
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~-----------~lv~~   70 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITI-----------KIVED   70 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHH-----------HHHHH
Confidence            48899999999999999999999988888766 4432 23566788889999888888887654           34444


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+...              ...+|||+|     |||++..++    ..+..   .. ....+|+|++|++++.+|+..|.
T Consensus        71 ~l~~~--------------~~~~g~ilD-----GfPR~~~Qa----~~l~~---~~-~~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         71 KINTI--------------KNNDNFILD-----GFPRNINQA----KALDK---FL-PNIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             HHhcc--------------cccCcEEEE-----CCCCCHHHH----HHHHH---hc-CCCEEEEEECCHHHHHHHHHCCC
Confidence            44321              234567778     999887763    22221   11 22468889999999999986542


Q ss_pred             --------------------------C----Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHHHHHHHH
Q psy16874        168 --------------------------E----RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDIDTLGLIV  207 (227)
Q Consensus       168 --------------------------~----~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~~v~~~I  207 (227)
                                                .    +.. +.+..++-.+.|.....         ..++.||+++++++|+++|
T Consensus       124 ~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i  203 (211)
T PRK14526        124 ICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKL  203 (211)
T ss_pred             cccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHH
Confidence                                      0    111 13333333334433321         1589999999999999999


Q ss_pred             HHHHHH
Q psy16874        208 KDIVID  213 (227)
Q Consensus       208 ~~~i~~  213 (227)
                      .+.|..
T Consensus       204 ~~~l~~  209 (211)
T PRK14526        204 IEIISK  209 (211)
T ss_pred             HHHHcc
Confidence            988864

>TIGR01351 adk adenylate kinases

Probab=99.77  E-value=9.5e-18  Score=133.17  Aligned_cols=165  Identities=22%  Similarity=0.290  Sum_probs=111.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      |+|.|+|||||||+|+.|++.++..++++.. +++. ....+.+..++.++.++..+++....           ..+...
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~-----------~l~~~~   70 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVN-----------QLVKER   70 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHH-----------HHHHHH
Confidence            7899999999999999999999999988855 4432 22456677788888888888886654           344444


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCHHHHHHhcCCCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      +...             .....|||+|     +||++..++    ..+.   .... .|+.+|+|++|.+++.+|+..|.
T Consensus        71 i~~~-------------~~~~~~~ilD-----GfPrt~~Qa----~~l~---~~~~~~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        71 LTQN-------------QDNENGFILD-----GFPRTLSQA----EALD---ALLKEKIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             HhcC-------------cccCCcEEEe-----CCCCCHHHH----HHHH---HHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence            4331             0124566778     777765542    2222   1122 68999999999999999997652


Q ss_pred             ------------------------------CCcc-cHHHHHHHHHHHHHHhh-------C--CeEEEcCCCCHHHHHHHH
Q psy16874        168 ------------------------------ERYE-QTDFQRKVAENYEKLKD-------N--IWIDIDADKDIDTLGLIV  207 (227)
Q Consensus       168 ------------------------------~~~~-~~~~~~~~~~~~~~~~~-------~--~~~~Id~~~s~~~v~~~I  207 (227)
                                                    .+.. +.+.+++-.+.|.....       .  .++.||+++++++|++.|
T Consensus       126 ~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i  205 (210)
T TIGR01351       126 ICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRI  205 (210)
T ss_pred             ccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence                                          0111 12333333333333321       1  589999999999999999


Q ss_pred             HHHH
Q psy16874        208 KDIV  211 (227)
Q Consensus       208 ~~~i  211 (227)
                      .+.|
T Consensus       206 ~~~l  209 (210)
T TIGR01351       206 LEAL  209 (210)
T ss_pred             HHhh
Confidence            8876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.77  E-value=6.3e-18  Score=135.25  Aligned_cols=125  Identities=17%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +.|+.|+|.|+|||||||+++.|++.++..+++++. +++. ...++.+..++++..++..+++....           .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~-----------~   72 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVI-----------A   72 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHH-----------H
Confidence            557779999999999999999999999999988876 5542 23457788899999998888887765           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+.+.+.+-            ......|||+|     +||++..++    ..+.    ....|+++|+|++|.+++.+|+
T Consensus        73 lv~~~l~~~------------~~~~~~g~iLD-----GfPRt~~Qa----~~l~----~~~~~~~vi~l~~~~~~~~~Rl  127 (229)
T PTZ00088         73 IVKDEIAKV------------TDDCFKGFILD-----GFPRNLKQC----KELG----KITNIDLFVNIYLPRNILIKKL  127 (229)
T ss_pred             HHHHHHHhh------------ccccCceEEEe-----cCCCCHHHH----HHHH----hcCCCCEEEEEeCCHHHHHHHH
Confidence            333333220            01234567778     888877662    2221    1137999999999999999998


Q ss_pred             CCC
Q psy16874        164 GFG  166 (227)
Q Consensus       164 ~~r  166 (227)
                      ..|
T Consensus       128 ~~R  130 (229)
T PTZ00088        128 LGR  130 (229)
T ss_pred             HcC
Confidence            654

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.76  E-value=1.8e-17  Score=128.01  Aligned_cols=181  Identities=21%  Similarity=0.276  Sum_probs=110.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      ..++|+|.|++|+||||+++.|+++++...+     .|...+.   ..+..++.+...+ .......|...|.....   
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~-----~E~vedn---p~L~~FY~d~~~y-af~~QiyFL~~Rfk~~k---   70 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF-----YELVEDN---PFLDLFYEDPERY-AFLLQIYFLLNRFKKIK---   70 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee-----eecccCC---hHHHHHHHhHHHh-hHHHHHHHHHHHHHHHH---
Confidence            4678999999999999999999999985321     2221122   4556666654442 23334445555554322   


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhh--ccCC-C---Chhhhhc-------ccCCCC-CCCEEEE
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSA--AKEG-M---DISWCFQ-------PEKGLP-KPDAVLL  151 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~--~~~~-~---~~~~~~~-------~~~~~~-~pd~vi~  151 (227)
                      ..+..+.                  .|+||+++... .+..  ...+ +   ....+..       .....+ .||+.||
T Consensus        71 ~~~~~~~------------------~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIy  132 (216)
T COG1428          71 KALSDKN------------------NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIY  132 (216)
T ss_pred             HHhcccc------------------cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEE
Confidence            2222222                  34477776544 2211  1111 1   1111111       122344 8999999


Q ss_pred             eecCHHHHHHhcCCCCCCcc------cHHHHHHHHHHHHHHhhC----CeEEEcCC----CCHHHHHHHHHHHHHHHhhh
Q psy16874        152 FKLNEEALQRRKGFGDERYE------QTDFQRKVAENYEKLKDN----IWIDIDAD----KDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       152 L~~~~e~~~~R~~~r~~~~~------~~~~~~~~~~~~~~~~~~----~~~~Id~~----~s~~~v~~~I~~~i~~~l~~  217 (227)
                      |+|+.+++.+|+.+|++.+|      +.++++.++..|..|..+    +.+.||++    ...++-...+...|...++.
T Consensus       133 Ld~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~~  212 (216)
T COG1428         133 LDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLKL  212 (216)
T ss_pred             EeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHhh
Confidence            99999999999998888776      157999999999999875    67777755    22244555666666655543

>PLN02842 nucleotide kinase

Probab=99.76  E-value=8.7e-18  Score=146.51  Aligned_cols=172  Identities=19%  Similarity=0.233  Sum_probs=116.9

Q ss_pred             EEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874         12 VFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI   89 (227)
Q Consensus        12 ~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   89 (227)
                      .|+|+|||||||+|+.|++.++..++++.. +++ ...+++.|..+++++.++..+++.....+.           ...+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll-----------~drl   69 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMV-----------TGRL   69 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHH-----------HHHH
Confidence            379999999999999999999998888765 332 223678899999999888877776655322           2222


Q ss_pred             HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC--
Q psy16874         90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD--  167 (227)
Q Consensus        90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~--  167 (227)
                      ...             ....+|||+|     +||++..+.    ..   +......||++|+|++|++++.+|+..|.  
T Consensus        70 ~~~-------------~~~~~G~ILD-----GfPRt~~Qa----~~---Le~~~~~PDlVI~LDvpdevlleRl~gR~~d  124 (505)
T PLN02842         70 SRE-------------DAKEKGWLLD-----GYPRSFAQA----QS---LEKLKIRPDIFILLDVPDEILIDRCVGRRLD  124 (505)
T ss_pred             hCc-------------cccCCcEEEe-----CCCCcHHHH----HH---HHhcCCCCCEEEEEeCCHHHHHHHHhccccc
Confidence            210             1234567779     666654431    11   22234579999999999999999975431  


Q ss_pred             ----C--------------------Ccc-cHHHHHHHHHHHHHHhh-------CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        168 ----E--------------------RYE-QTDFQRKVAENYEKLKD-------NIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       168 ----~--------------------~~~-~~~~~~~~~~~~~~~~~-------~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                          .                    +.. +.+..++-...|.+...       ..++.||+++++++|+++|.+.|.+.+
T Consensus       125 p~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L  204 (505)
T PLN02842        125 PVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQ  204 (505)
T ss_pred             cccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence                0                    001 12333333334554442       157899999999999999999999888


Q ss_pred             hhcC
Q psy16874        216 KKSQ  219 (227)
Q Consensus       216 ~~~~  219 (227)
                      .++.
T Consensus       205 ~~~~  208 (505)
T PLN02842        205 KDAT  208 (505)
T ss_pred             hhhh
Confidence            7754

>PHA03132 thymidine kinase; Provisional

Probab=99.76  E-value=2.8e-17  Score=145.29  Aligned_cols=162  Identities=19%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC-----CCchHHHHHHHhhc--CCCCHHHHH--------
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT-----ISTGHIIDEYLRKK--IELPDQAAH--------   71 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~--------   71 (227)
                      ++++|+|+|++||||||+++.|++.+   +..+..+.+|...     ...++.+.+.+..+  +.+......        
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA  332 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFA  332 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHh
Confidence            37899999999999999999999988   7788889998632     23455555555432  122222111        


Q ss_pred             --HHHHhhhhhhh----hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhh---hccCC-CChhhhhcc-c
Q psy16874         72 --LLFSANRWERE----PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS---AAKEG-MDISWCFQP-E  140 (227)
Q Consensus        72 --~~~~~~~~~~~----~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~---~~~~~-~~~~~~~~~-~  140 (227)
                        +.+.++|.++.    ..+.+.+..+.+||+                 |||++|.+++.   ....+ ++...+..+ .
T Consensus       333 ~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~-----------------DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~  395 (580)
T PHA03132        333 TPFRALATRTRRLVQPESVRRPVAPLDNWVLF-----------------DRHLLSATVVFPLMHLRNGMLSFSHFIQLLS  395 (580)
T ss_pred             hHHHHHHHHHHHHHhhhhhccccccCCCEEEE-----------------ecCccccHHHHHHhccccccCCHHHHHHHHH
Confidence              13345665553    334456677889999                 99999988733   22222 222222122 1


Q ss_pred             -CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh
Q psy16874        141 -KGLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       141 -~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~  188 (227)
                       ...+.||++|||+++++++.+|+.+|++.++   +.+|++++++.|..+..
T Consensus       396 ~~~~~~PDLiIyLdv~pe~alkRIkkRgR~~E~~IdleYL~rLre~Y~~l~~  447 (580)
T PHA03132        396 TFRAHEGDVIVLLKLNSEENLRRVKKRGRKEEKGINLTYLKELNWAYHAVYC  447 (580)
T ss_pred             HhcccCCCEEEEEeCCHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHH
Confidence             1224699999999999999999988766555   47899999998888765

>PRK14530 adenylate kinase; Provisional

Probab=99.74  E-value=4.9e-17  Score=129.56  Aligned_cols=163  Identities=17%  Similarity=0.253  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC------CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD------RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER   81 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (227)
                      +.|+|+|+|||||||+++.|++.++..+++++. +++..      .....+. .+.++..+..+++....          
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~----------   72 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVN----------   72 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHH----------
Confidence            359999999999999999999999887877654 33211      1122232 34455556555664433          


Q ss_pred             hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                       ..+...+...                 .|||+|     ++|++..+.    ..+..    ...|+++|+|++|++++.+
T Consensus        73 -~~l~~~l~~~-----------------~~~Ild-----G~pr~~~q~----~~l~~----~~~~d~vI~Ld~~~~~l~~  121 (215)
T PRK14530         73 -EIVEEALSDA-----------------DGFVLD-----GYPRNLEQA----EYLES----ITDLDVVLYLDVSEEELVD  121 (215)
T ss_pred             -HHHHHHHhcC-----------------CCEEEc-----CCCCCHHHH----HHHHH----hcCCCEEEEEeCCHHHHHH
Confidence             2333333322                 234447     666554331    22221    1258999999999999999


Q ss_pred             hcCCCCC--------------------------Ccc-----cHHHHHHHHHHHHHHh--------h-CCeEEEcCCCCHH
Q psy16874        162 RKGFGDE--------------------------RYE-----QTDFQRKVAENYEKLK--------D-NIWIDIDADKDID  201 (227)
Q Consensus       162 R~~~r~~--------------------------~~~-----~~~~~~~~~~~~~~~~--------~-~~~~~Id~~~s~~  201 (227)
                      |+..|..                          +..     ..+..+.-...|....        . ..++.||++++++
T Consensus       122 Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~  201 (215)
T PRK14530        122 RLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPD  201 (215)
T ss_pred             HHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHH
Confidence            9865420                          111     1222222222332211        1 1588999999999


Q ss_pred             HHHHHHHHHHHH
Q psy16874        202 TLGLIVKDIVID  213 (227)
Q Consensus       202 ~v~~~I~~~i~~  213 (227)
                      +|++.|...|..
T Consensus       202 ~v~~~i~~~l~~  213 (215)
T PRK14530        202 EVWADIQDAIDD  213 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988864

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.71  E-value=5.4e-17  Score=127.00  Aligned_cols=123  Identities=21%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      |+|+|+|||||||+++.|++.++..+++++. +++. ....+.+..+.+++.++...++....           ..+.+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~l~~~~   70 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVI-----------KLLKER   70 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHH-----------HHHHHH
Confidence            8999999999999999999999888877654 3332 12345667777777777666665433           344444


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      +...              ....|||+|     +||++..+.    .++.........|+++|+|++|++++.+|+..|.
T Consensus        71 l~~~--------------~~~~~~vld-----g~Pr~~~q~----~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          71 LKKP--------------DCKKGFILD-----GFPRTVDQA----EALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             Hhcc--------------cccCCEEEe-----CCCCCHHHH----HHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            4432              023455568     666554432    3333222223478999999999999999997653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.71  E-value=1.7e-16  Score=122.29  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      +.|+|.|+|||||||+|+.|++.++..|++.++ ++.. ....+.+..++.++..+..++++...           ..+.
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~-----------~~v~   69 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVN-----------GLVK   69 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHH-----------HHHH
Confidence            358999999999999999999999999999766 4442 23577888899999988888887766           3444


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .++...+              +..++|+|     +||+...+.    ..++.. ......+|.++.++++.+.+..|+..
T Consensus        70 ~rl~~~d--------------~~~~~I~d-----g~PR~~~qa----~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~  126 (178)
T COG0563          70 ERLDEAD--------------CKAGFILD-----GFPRTLCQA----RALKRLLKELGVRLDMVIELDVPEELLLERLLG  126 (178)
T ss_pred             HHHHhhc--------------ccCeEEEe-----CCCCcHHHH----HHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhC
Confidence            4444321              11144558     888776663    333322 22235889999999999999999976


Q ss_pred             CCCCcc-cHHHHHHHHHHHHHHhhC--Ce--EEEcCCCCHHHHHHHHHHHH
Q psy16874        166 GDERYE-QTDFQRKVAENYEKLKDN--IW--IDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       166 r~~~~~-~~~~~~~~~~~~~~~~~~--~~--~~Id~~~s~~~v~~~I~~~i  211 (227)
                      |..+.. +.+........|......  .+  +.||+.++++++++.+.+.+
T Consensus       127 r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         127 RRVREDDNEETVKKRLKVYHEQTAPLIEYYSVTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ccccccCCHHHHHHHHHHHHhcccchhhhheeeccCCCCHHHHHHHHHHhh
Confidence            532221 244555555566655543  22  56999999999999887764

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.67  E-value=5e-16  Score=117.36  Aligned_cols=158  Identities=17%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      +.|+++|++||||||+++.|++.|+...++++..-+...    +..+.+++.. |.......+.           +.+..
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~----g~sI~eIF~~~GE~~FR~~E~-----------~vl~~   67 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT----GMSIAEIFEEEGEEGFRRLET-----------EVLKE   67 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH----CcCHHHHHHHHhHHHHHHHHH-----------HHHHH
Confidence            459999999999999999999999998888765222111    2233344443 2211222222           45666


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC-
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG-  166 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r-  166 (227)
                      ....++.||.          .++|.|++     .         .....+.       .--.+|||++|++++++|+... 
T Consensus        68 l~~~~~~Via----------TGGG~v~~-----~---------enr~~l~-------~~g~vv~L~~~~e~l~~Rl~~~~  116 (172)
T COG0703          68 LLEEDNAVIA----------TGGGAVLS-----E---------ENRNLLK-------KRGIVVYLDAPFETLYERLQRDR  116 (172)
T ss_pred             HhhcCCeEEE----------CCCccccC-----H---------HHHHHHH-------hCCeEEEEeCCHHHHHHHhcccc
Confidence            6666666665          78888887     1         1112231       1227999999999999999732 


Q ss_pred             -CCCcccH---HHHHHH----HHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        167 -DERYEQT---DFQRKV----AENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       167 -~~~~~~~---~~~~~~----~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                       ++.+...   +.++.+    ...|++.   ..++++++...++++++|.+.+...+
T Consensus       117 ~RPll~~~~~~~~l~~L~~~R~~~Y~e~---a~~~~~~~~~~~~v~~~i~~~l~~~~  170 (172)
T COG0703         117 KRPLLQTEDPREELEELLEERQPLYREV---ADFIIDTDDRSEEVVEEILEALEGSL  170 (172)
T ss_pred             CCCcccCCChHHHHHHHHHHHHHHHHHh---CcEEecCCCCcHHHHHHHHHHHHHhc
Confidence             2233321   222222    2345444   45899988777889999988887543

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.64  E-value=1.8e-15  Score=116.22  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI   89 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   89 (227)
                      .|+|+|++||||||+++.|++.++...++.+.+.+...+..    +.+++...+    +...      +....+.+ ..+
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~----~~~~~~~~g----~~~~------~~~e~~~~-~~~   68 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT----VAEIVEREG----WAGF------RARESAAL-EAV   68 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCC----HHHHHHHHC----HHHH------HHHHHHHH-HHh
Confidence            48889999999999999999999776555443221111111    122222111    0000      00001222 233


Q ss_pred             HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC-
Q psy16874         90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE-  168 (227)
Q Consensus        90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~-  168 (227)
                      ..+..|+.          +++|+|++     ..         ...++.       ..+++|||++|++++.+|+..+.. 
T Consensus        69 ~~~~~vi~----------~ggg~vl~-----~~---------~~~~l~-------~~~~~v~l~~~~~~~~~Rl~~r~~~  117 (171)
T PRK03731         69 TAPSTVIA----------TGGGIILT-----EE---------NRHFMR-------NNGIVIYLCAPVSVLANRLEANPEE  117 (171)
T ss_pred             cCCCeEEE----------CCCCccCC-----HH---------HHHHHH-------hCCEEEEEECCHHHHHHHHcccccc
Confidence            44455554          56667766     11         113332       356899999999999999975421 


Q ss_pred             ---------Ccc-c-HHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        169 ---------RYE-Q-TDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       169 ---------~~~-~-~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                               .+. . .+.+++....|....   .++||+++++++++++|.+.+.+
T Consensus       118 ~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a---~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        118 DQRPTLTGKPISEEVAEVLAEREALYREVA---HHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             ccCCcCCCCChHHHHHHHHHHHHHHHHHhC---CEEEcCCCCHHHHHHHHHHHHhc
Confidence                     111 1 344455555665543   48999999999999999888753

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.63  E-value=4.5e-15  Score=120.83  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI   89 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   89 (227)
                      +|+|+|+|||||||+++.|++.+...++++.++..        +.++..+..   +......    ..+......+...+
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~--------D~lr~~~~~---~~~~~e~----~~~~~~~~~i~~~l   65 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT--------DLIRESFPV---WKEKYEE----FIRDSTLYLIKTAL   65 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc--------HHHHHHhHH---hhHHhHH----HHHHHHHHHHHHHH
Confidence            58999999999999999999999888888776642        122222210   0000000    00111224566677


Q ss_pred             HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCCC
Q psy16874         90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDER  169 (227)
Q Consensus        90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~  169 (227)
                      ..+..||+                 |...+    +...+     ..+..+......+..+|||++|.+++.+|...|+..
T Consensus        66 ~~~~~VI~-----------------D~~~~----~~~~r-----~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~  119 (249)
T TIGR03574        66 KNKYSVIV-----------------DDTNY----YNSMR-----RDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK  119 (249)
T ss_pred             hCCCeEEE-----------------eccch----HHHHH-----HHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC
Confidence            78888888                 84321    11111     122223333346778999999999999999776544


Q ss_pred             cccHHHHHHHHHHHHHHhh-----CCeEEEcCCC--CHHHHHHHHHHHHHHHh
Q psy16874        170 YEQTDFQRKVAENYEKLKD-----NIWIDIDADK--DIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~--s~~~v~~~I~~~i~~~l  215 (227)
                      + ..+.+..+...|+....     .+.++||++.  +.+++++.|.+.+...+
T Consensus       120 ~-~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~~~  171 (249)
T TIGR03574       120 I-PNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISENKL  171 (249)
T ss_pred             C-CHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            3 35566666666654432     1779999886  66889999888776433

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK06762 hypothetical protein; Provisional

Probab=99.63  E-value=2.3e-14  Score=109.53  Aligned_cols=160  Identities=15%  Similarity=0.047  Sum_probs=91.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH-HHHHHHHHhhhhhhhhHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-QAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~   86 (227)
                      |++|+|+|+|||||||+++.|++.++.   .+..+.        .+.++..+......+. .....        ....+.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~---~~~~i~--------~D~~r~~l~~~~~~~~~~~~~~--------~~~~~~   62 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGR---GTLLVS--------QDVVRRDMLRVKDGPGNLSIDL--------IEQLVR   62 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEec--------HHHHHHHhccccCCCCCcCHHH--------HHHHHH
Confidence            679999999999999999999999842   333332        1222221111100000 00000        012233


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      ..+..|..|++                 |......    ...     .++..+......+..+|||++|++++.+|...|
T Consensus        63 ~~~~~g~~vil-----------------d~~~~~~----~~~-----~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R  116 (166)
T PRK06762         63 YGLGHCEFVIL-----------------EGILNSD----RYG-----PMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR  116 (166)
T ss_pred             HHHhCCCEEEE-----------------chhhccH----hHH-----HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence            34567778887                 7332111    011     223333333445788999999999999999876


Q ss_pred             CCC-cccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        167 DER-YEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ... ....+.+++.....+.+.....++++++.++++++++|...+.
T Consensus       117 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        117 PKSHEFGEDDMRRWWNPHDTLGVIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             cccccCCHHHHHHHHhhcCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence            542 2234555555433333221245666777899999999988764

>PRK13948 shikimate kinase; Provisional

Probab=99.62  E-value=6.9e-15  Score=113.76  Aligned_cols=164  Identities=14%  Similarity=0.088  Sum_probs=93.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC-CCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI-ELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      +.+..|+++|++||||||+++.|++.++...++.+...+..    .|..+.+++...+ ......+.           +.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~----~g~si~~if~~~Ge~~fR~~E~-----------~~   72 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV----TGKSIPEIFRHLGEAYFRRCEA-----------EV   72 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH----HhCCHHHHHHHhCHHHHHHHHH-----------HH
Confidence            56789999999999999999999999987665554322111    1222233333211 11111111           33


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +...+..+..||.          +++|++++     .         .....+.   .    -..+|||++|++++.+|+.
T Consensus        73 l~~l~~~~~~VIa----------~GgG~v~~-----~---------~n~~~l~---~----~g~vV~L~~~~e~l~~Rl~  121 (182)
T PRK13948         73 VRRLTRLDYAVIS----------LGGGTFMH-----E---------ENRRKLL---S----RGPVVVLWASPETIYERTR  121 (182)
T ss_pred             HHHHHhcCCeEEE----------CCCcEEcC-----H---------HHHHHHH---c----CCeEEEEECCHHHHHHHhc
Confidence            4444445556665          56666666     1         0112221   1    2368999999999999995


Q ss_pred             CCC-CCccc---HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874        165 FGD-ERYEQ---TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       165 ~r~-~~~~~---~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l  215 (227)
                      .+. +....   .+.+..+.+.-+.++....++||++ .+++++.++|.+.+...+
T Consensus       122 ~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        122 PGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            432 22221   1222222222121111123677766 799999999999997754

>PRK08233 hypothetical protein; Provisional

Probab=99.62  E-value=3.8e-14  Score=109.69  Aligned_cols=161  Identities=14%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe-EEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS-QFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++++|+|.|++||||||+++.|++.++...+.. +.++.+.    ....+..++..+..+......        ...+.+
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~l   69 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN----CPEDICKWIDKGANYSEWVLT--------PLIKDI   69 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc----CchhhhhhhhccCChhhhhhH--------HHHHHH
Confidence            478999999999999999999999986432221 1122221    112233444443332111111        111334


Q ss_pred             HHHHHcC--CEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         86 TKLIEQG--ITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        86 ~~~~~~~--~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .......  ..|++                 |      +++....     ..+      ...+|++|||++|++++.+|.
T Consensus        70 ~~~~~~~~~~~viv-----------------d------~~~~~~~-----~~~------~~~~d~~i~l~~~~~~~~~R~  115 (182)
T PRK08233         70 QELIAKSNVDYIIV-----------------D------YPFAYLN-----SEM------RQFIDVTIFIDTPLDIAMARR  115 (182)
T ss_pred             HHHHcCCCceEEEE-----------------e------eehhhcc-----HHH------HHHcCEEEEEcCCHHHHHHHH
Confidence            4444333  44555                 5      1211110     111      124789999999999998886


Q ss_pred             CCCC--C----Cccc--HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        164 GFGD--E----RYEQ--TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       164 ~~r~--~----~~~~--~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ..|.  +    .+..  ..++......|..+...    .+++||++.++++++++|.+.+..
T Consensus       116 ~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        116 ILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             HHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            4331  1    1111  34555555566664432    468899999999999999988763

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.61  E-value=2.1e-16  Score=119.08  Aligned_cols=119  Identities=25%  Similarity=0.243  Sum_probs=83.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHHH
Q psy16874         13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIE   90 (227)
Q Consensus        13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   90 (227)
                      |.|+|||||||+|+.|++.++..++++.. +++ ....++.|..+++++.++..+++....           +.+...+.
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~-----------~ll~~~l~   69 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVI-----------ELLKERLE   69 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHH-----------HHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHH-----------HHHHHHHh
Confidence            68999999999999999999988887754 333 123567788889999999988887766           45555554


Q ss_pred             cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         91 QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        91 ~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      +.              ...+|||+|     +||++..+.    ..+.+ +......|+.+|+|++|.+++.+|+..
T Consensus        70 ~~--------------~~~~g~ild-----GfPrt~~Qa----~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   70 QP--------------PCNRGFILD-----GFPRTLEQA----EALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             SG--------------GTTTEEEEE-----SB-SSHHHH----HHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             hh--------------cccceeeee-----eccccHHHH----HHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            32              345677778     888877662    22221 112455899999999999999999975

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>KOG3877|consensus

Probab=99.61  E-value=3.5e-14  Score=113.42  Aligned_cols=186  Identities=17%  Similarity=0.155  Sum_probs=118.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-----eeCCCCC-----C-----CchHHHHHHHhhcCCC-CHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-----VNFPDRT-----I-----STGHIIDEYLRKKIEL-PDQAA   70 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-----~~~~~~~-----~-----~~~~~~~~~~~~~~~~-~~~~~   70 (227)
                      +.++|+++|++|||||++++.|++.|++.+++...     ...-+++     +     ....-+..++.++..- .....
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            46899999999999999999999999999988422     1111000     0     0111245555554321 22222


Q ss_pred             HHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC--CC-Ch---hh---hhcc-c
Q psy16874         71 HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE--GM-DI---SW---CFQP-E  140 (227)
Q Consensus        71 ~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~--~~-~~---~~---~~~~-~  140 (227)
                      .-+|.....+.++.+...+..                 ++|+|++|+.+|.|++..+..  |. .-   ..   +++. -
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~T-----------------GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti  212 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILNT-----------------GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTI  212 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHhc-----------------CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhh
Confidence            223333333345566656554                 456666999999998875531  11 10   11   1111 1


Q ss_pred             CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc----cHHHHHHHHHHHHHHh-hC-----CeEEEcCC--CCHHHHHHHHH
Q psy16874        141 KGLPKPDAVLLFKLNEEALQRRKGFGDERYE----QTDFQRKVAENYEKLK-DN-----IWIDIDAD--KDIDTLGLIVK  208 (227)
Q Consensus       141 ~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~-~~-----~~~~Id~~--~s~~~v~~~I~  208 (227)
                      ..+..|++||||++|...+.+|+.+|++..+    ++.++..+.+.|.+.. +.     .++.-|.+  ++.+.|.+.|.
T Consensus       213 ~~ll~PHLViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIE  292 (393)
T KOG3877|consen  213 PQLLWPHLVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIE  292 (393)
T ss_pred             hhhcCccEEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhh
Confidence            2456899999999999999999998876655    3689999998887662 21     67777766  66667777765


Q ss_pred             H
Q psy16874        209 D  209 (227)
Q Consensus       209 ~  209 (227)
                      .
T Consensus       293 r  293 (393)
T KOG3877|consen  293 R  293 (393)
T ss_pred             h
Confidence            4

>PRK13946 shikimate kinase; Provisional

Probab=99.60  E-value=2.3e-14  Score=111.47  Aligned_cols=164  Identities=13%  Similarity=0.077  Sum_probs=94.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      ++.|+++|++||||||+++.|++.|+...++.+...+...+.+..    +++.. +....           +....+.+.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~----e~~~~~ge~~~-----------~~~e~~~l~   74 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIA----EIFAAYGEPEF-----------RDLERRVIA   74 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHH----HHHHHHCHHHH-----------HHHHHHHHH
Confidence            568999999999999999999999987766655421111111111    11111 11000           001113455


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      ..+..+..||+          ++.|.++.     .    ..     ...+.       .-.++|||++|++++.+|+..+
T Consensus        75 ~l~~~~~~Vi~----------~ggg~~~~-----~----~~-----r~~l~-------~~~~~v~L~a~~e~~~~Rl~~r  123 (184)
T PRK13946         75 RLLKGGPLVLA----------TGGGAFMN-----E----ET-----RAAIA-------EKGISVWLKADLDVLWERVSRR  123 (184)
T ss_pred             HHHhcCCeEEE----------CCCCCcCC-----H----HH-----HHHHH-------cCCEEEEEECCHHHHHHHhcCC
Confidence            55556666666          23332222     0    00     01221       1247899999999999999866


Q ss_pred             CCC--cc---cHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        167 DER--YE---QTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       167 ~~~--~~---~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      ..+  ..   ..+.++.+.+....+... ++.+.+++.+++++.+.|.+.|..++.+
T Consensus       124 ~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~  180 (184)
T PRK13946        124 DTRPLLRTADPKETLARLMEERYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEK  180 (184)
T ss_pred             CCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence            432  11   134445544433333332 4545456689999999999999877655

>PRK13947 shikimate kinase; Provisional

Probab=99.60  E-value=2.6e-14  Score=109.71  Aligned_cols=155  Identities=21%  Similarity=0.149  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCC-CCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE-LPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      .|+|.|+|||||||+++.|++.|++..++.+...+...+.+    +.+++..... .....+           ...+...
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~----~~~~~~~~ge~~~~~~e-----------~~~~~~l   67 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMT----VAEIFEKDGEVRFRSEE-----------KLLVKKL   67 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCc----HHHHHHHhChHHHHHHH-----------HHHHHHH
Confidence            49999999999999999999999887766654322111212    2222222111 000000           0223333


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE  168 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~  168 (227)
                      ...+..|+.          ++.|+++|..              ....+.       ...++|||++|++++.+|+..+..
T Consensus        68 ~~~~~~vi~----------~g~g~vl~~~--------------~~~~l~-------~~~~vv~L~~~~~~l~~Rl~~r~~  116 (171)
T PRK13947         68 ARLKNLVIA----------TGGGVVLNPE--------------NVVQLR-------KNGVVICLKARPEVILRRVGKKKS  116 (171)
T ss_pred             hhcCCeEEE----------CCCCCcCCHH--------------HHHHHH-------hCCEEEEEECCHHHHHHHhcCCCC
Confidence            334455554          5667888820              002221       124799999999999999976533


Q ss_pred             C--cccHHHHHHHHHHHHHHh---hCCeEEEc-CCCCHHHHHHHHHHH
Q psy16874        169 R--YEQTDFQRKVAENYEKLK---DNIWIDID-ADKDIDTLGLIVKDI  210 (227)
Q Consensus       169 ~--~~~~~~~~~~~~~~~~~~---~~~~~~Id-~~~s~~~v~~~I~~~  210 (227)
                      +  ....+....+.+.|+...   ....++|| ++.+++++.+.|.+.
T Consensus       117 rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~  164 (171)
T PRK13947        117 RPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKA  164 (171)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHH
Confidence            2  222233334433333321   11225555 558999999988883

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.59  E-value=1.8e-14  Score=106.61  Aligned_cols=157  Identities=18%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCC--CCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPD--RTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      |.|.|.|+|||||||+++.|+++++..+++.+. |++-.  .+-.+.++ ..+-.+.+.++...-            +..
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef-~~~AE~~p~iD~~iD------------~rq   67 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF-SRYAEEDPEIDKEID------------RRQ   67 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH-HHHHhcCchhhHHHH------------HHH
Confidence            579999999999999999999999998888655 44321  11122221 222222222222111            122


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......+++|+                  +              +.-..|+..     ..+|+.|||.+|.++..+|+..
T Consensus        68 ~e~a~~~nvVl------------------e--------------grLA~Wi~k-----~~adlkI~L~Apl~vRa~Ria~  110 (179)
T COG1102          68 KELAKEGNVVL------------------E--------------GRLAGWIVR-----EYADLKIWLKAPLEVRAERIAK  110 (179)
T ss_pred             HHHHHcCCeEE------------------h--------------hhhHHHHhc-----cccceEEEEeCcHHHHHHHHHH
Confidence            33333444433                  4              333377732     5789999999999999999987


Q ss_pred             CCCC-ccc--HHHHH---HHHHHHHHHhhC-------CeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874        166 GDER-YEQ--TDFQR---KVAENYEKLKDN-------IWIDIDAD-KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       166 r~~~-~~~--~~~~~---~~~~~~~~~~~~-------~~~~Id~~-~s~~~v~~~I~~~i~~~l  215 (227)
                      |+.. ++.  .+...   .-.+.|..+..-       --++||++ -++++|...|...++...
T Consensus       111 REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~  174 (179)
T COG1102         111 REGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALS  174 (179)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence            6432 322  11111   112245554421       35788877 778888888888887544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.59  E-value=1.4e-14  Score=111.25  Aligned_cols=164  Identities=18%  Similarity=0.162  Sum_probs=87.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++++.|+|+|++||||||+++.|++.++...++.+.+.+...+.+..    +++.....  ..     +   +......+
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~----~~~~~~g~--~~-----~---~~~~~~~~   67 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIP----EIFEEEGE--AA-----F---RELEEEVL   67 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHH----HHHHHHCH--HH-----H---HHHHHHHH
Confidence            56889999999999999999999999976555443321111111111    11111000  00     0   00011233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .........|+.          .+.+++++     ..         ...++.       ...++|||++|++++.+|+..
T Consensus        68 ~~l~~~~~~vi~----------~g~~~~~~-----~~---------~r~~l~-------~~~~~v~l~~~~~~~~~R~~~  116 (175)
T PRK00131         68 AELLARHNLVIS----------TGGGAVLR-----EE---------NRALLR-------ERGTVVYLDASFEELLRRLRR  116 (175)
T ss_pred             HHHHhcCCCEEE----------eCCCEeec-----HH---------HHHHHH-------hCCEEEEEECCHHHHHHHhcC
Confidence            333333334444          23344444     10         012231       234799999999999999976


Q ss_pred             CCCC--cc--c-HHHHHHHHHHHHHHhhC-CeEEEcC-CCCHHHHHHHHHHHHHHH
Q psy16874        166 GDER--YE--Q-TDFQRKVAENYEKLKDN-IWIDIDA-DKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       166 r~~~--~~--~-~~~~~~~~~~~~~~~~~-~~~~Id~-~~s~~~v~~~I~~~i~~~  214 (227)
                      +..+  ..  . .+.+..+.......... ..++||+ +.+++++++.|.+.|..+
T Consensus       117 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~  172 (175)
T PRK00131        117 DRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEAA  172 (175)
T ss_pred             CCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence            4321  22  1 22222222221111111 2367775 499999999999998754

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.58  E-value=4.2e-14  Score=111.88  Aligned_cols=172  Identities=13%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFS   75 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~   75 (227)
                      ++++++|+|+||+||||||+++.|.+.....++.+-+ .+.+..+..-|        +.+......+..+ .+..   +.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~l-e~~~---~~   85 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELL-EWAE---VY   85 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcE-EEEE---Ec
Confidence            4578999999999999999999998653222223222 33222111111        1122222222110 0000   00


Q ss_pred             hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874         76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL  154 (227)
Q Consensus        76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~  154 (227)
                      ...+.. ...+...+..|.++|+                 |-               +.+.+..+...  .||+++++.+
T Consensus        86 g~~YGt~~~~i~~~~~~g~~vi~-----------------~~---------------~~~g~~~l~~~--~pd~~~if~~  131 (206)
T PRK14738         86 GNYYGVPKAPVRQALASGRDVIV-----------------KV---------------DVQGAASIKRL--VPEAVFIFLA  131 (206)
T ss_pred             CceecCCHHHHHHHHHcCCcEEE-----------------Ec---------------CHHHHHHHHHh--CCCeEEEEEe
Confidence            001111 1356777788887777                 41               11111112221  4777666666


Q ss_pred             C--HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        155 N--EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       155 ~--~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      |  .+++.+|+..|++. ...++.+++...|.++...   .+++||++.++++++++|.+.|....
T Consensus       132 pps~e~l~~Rl~~R~~~-~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~~  196 (206)
T PRK14738        132 PPSMDELTRRLELRRTE-SPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAEK  196 (206)
T ss_pred             CCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            5  56889999776433 2357778888888766532   68999999999999999999997653

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=6.4e-14  Score=102.22  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=107.5

Q ss_pred             EcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHHHcCC
Q psy16874         14 EGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLIEQGI   93 (227)
Q Consensus        14 ~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   93 (227)
                      .|+.||||||++..|++.+++.+++-+.++-|       +.+.++ ..|..+.+.-..-+....+    ..+......+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~-------aNi~KM-~~GiPL~DdDR~pWL~~l~----~~~~~~~~~~~   68 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP-------ANIEKM-SAGIPLNDDDRWPWLEALG----DAAASLAQKNK   68 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCH-------HHHHHH-hCCCCCCcchhhHHHHHHH----HHHHHhhcCCC
Confidence            49999999999999999999988887766632       344443 3344443322111111000    12233334555


Q ss_pred             EEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHHHHhcCCCCCCccc
Q psy16874         94 TLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEALQRRKGFGDERYEQ  172 (227)
Q Consensus        94 ~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~~~R~~~r~~~~~~  172 (227)
                      .+|++|++|++.-         |                 ..+   ...  .|+ .+|||+.+++++.+|+..|...|-+
T Consensus        69 ~~vi~CSALKr~Y---------R-----------------D~L---R~~--~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~  117 (161)
T COG3265          69 HVVIACSALKRSY---------R-----------------DLL---REA--NPGLRFVYLDGDFDLILERMKARKGHFMP  117 (161)
T ss_pred             ceEEecHHHHHHH---------H-----------------HHH---hcc--CCCeEEEEecCCHHHHHHHHHhcccCCCC
Confidence            5677677777662         1                 112   111  233 5999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        173 TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       173 ~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+.++.+.+..+....+ .++.||.+.+++++.+++...|..
T Consensus       118 ~~ll~SQfa~LE~P~~de~vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         118 ASLLDSQFATLEEPGADEDVLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             HHHHHHHHHHhcCCCCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence            88888888787777654 799999999999999998888753

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.57  E-value=5.5e-14  Score=108.12  Aligned_cols=157  Identities=15%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.+.|+|.|++||||||+++.|++.++...++.+...+...+....    .++.. +.......           ..+.+
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~----~~~~~~g~~~fr~~-----------e~~~l   67 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIG----WVFDVEGEEGFRDR-----------EEKVI   67 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHh----HHHHHhCHHHHHHH-----------HHHHH
Confidence            3567999999999999999999999865544433211111111111    11111 10000000           11233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......+..|+.          +++|++++.              ....++.       ..+.+|||++|++++.+|+..
T Consensus        68 ~~l~~~~~~vi~----------~ggg~v~~~--------------~~~~~l~-------~~~~vv~L~~~~e~~~~Ri~~  116 (172)
T PRK05057         68 NELTEKQGIVLA----------TGGGSVKSR--------------ETRNRLS-------ARGVVVYLETTIEKQLARTQR  116 (172)
T ss_pred             HHHHhCCCEEEE----------cCCchhCCH--------------HHHHHHH-------hCCEEEEEeCCHHHHHHHHhC
Confidence            333334445544          566666651              0113332       235899999999999999965


Q ss_pred             CC--CCccc---HHHHH----HHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        166 GD--ERYEQ---TDFQR----KVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~--~~~~~---~~~~~----~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      +.  +...+   .+.+.    .....|++.++   ++||++ .+++++.++|.+.+.
T Consensus       117 ~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad---~~idt~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        117 DKKRPLLQVDDPREVLEALANERNPLYEEIAD---VTIRTDDQSAKVVANQIIHMLE  170 (172)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHh
Confidence            42  22221   22233    23335555544   788876 799999998888774

>PRK03839 putative kinase; Provisional

Probab=99.56  E-value=4.6e-14  Score=109.30  Aligned_cols=69  Identities=12%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHH--HHHh-hCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENY--EKLK-DNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~--~~~~-~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      .|+++|||+++++++.+|+..|+..-..  ......+.+.+  +.+. ..++++||++ .++++++++|.+.|..
T Consensus        79 ~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~  153 (180)
T PRK03839         79 PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKS  153 (180)
T ss_pred             CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999765311110  11112222211  1111 2278999997 6999999999888864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.56  E-value=4.8e-14  Score=108.81  Aligned_cols=160  Identities=22%  Similarity=0.188  Sum_probs=88.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+|+|++||||||+++.|++.+...+..+..+.        ++.+++.+..... .......  .+.+.   ..+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~--------~d~~r~~~~~~~~-~~~~~~~--~~~~~---~~l   70 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD--------GDELREILGHYGY-DKQSRIE--MALKR---AKL   70 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe--------cHHHHhhcCCCCC-CHHHHHH--HHHHH---HHH
Confidence            57889999999999999999999999987665555443        3344444432211 1111110  01111   122


Q ss_pred             HHH-HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         86 TKL-IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        86 ~~~-~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ... ...|.+||+                 |...    ++         .++.........+.++|||++|++++.+|..
T Consensus        71 ~~~l~~~g~~VI~-----------------~~~~----~~---------~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~  120 (176)
T PRK05541         71 AKFLADQGMIVIV-----------------TTIS----MF---------DEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ  120 (176)
T ss_pred             HHHHHhCCCEEEE-----------------EeCC----cH---------HHHHHHHHhhcCCeEEEEEeCCHHHHHHhch
Confidence            222 256788888                 5111    00         1121222222345689999999999999986


Q ss_pred             CCCCCccc------HHHHHHHHHHHHHHhhCCeEEEcCC--CCHHHHHHHHHHHHHHH
Q psy16874        165 FGDERYEQ------TDFQRKVAENYEKLKDNIWIDIDAD--KDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       165 ~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~Id~~--~s~~~v~~~I~~~i~~~  214 (227)
                      ++  .+..      .+........|+..   ..++||++  .++++++++|.+.+...
T Consensus       121 ~~--l~~~~~~~~~~~~~~~~~~~~~~~---Ad~vI~~~~~~~~~~~v~~i~~~l~~~  173 (176)
T PRK05541        121 KG--LYTKALKGEIKNVVGVDIPFDEPK---ADLVIDNSCRTSLDEKVDLILNKLKLR  173 (176)
T ss_pred             hh--HHHHHHcCcccccccCCCcccCCC---CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            32  1110      11111111122222   24777776  48888888888777543

>PRK13949 shikimate kinase; Provisional

Probab=99.56  E-value=3.8e-14  Score=108.64  Aligned_cols=155  Identities=14%  Similarity=0.049  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      .|+|+|++||||||+++.|++.++...++++.+-+...+.    .+.+++.. +.......+.           ..+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~----~~~~~~~~~g~~~fr~~e~-----------~~l~~l   67 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK----TVGDIFAERGEAVFRELER-----------NMLHEV   67 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc----cHHHHHHHhCHHHHHHHHH-----------HHHHHH
Confidence            4999999999999999999999987766655421111111    12222222 1111111111           233332


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC--
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG--  166 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r--  166 (227)
                      ......|+.          +++|++.+     .         .....+.       ..+++|||++|++++.+|+..+  
T Consensus        68 ~~~~~~vis----------~Ggg~~~~-----~---------~~~~~l~-------~~~~vi~L~~~~~~~~~Ri~~~~~  116 (169)
T PRK13949         68 AEFEDVVIS----------TGGGAPCF-----F---------DNMELMN-------ASGTTVYLKVSPEVLFVRLRLAKQ  116 (169)
T ss_pred             HhCCCEEEE----------cCCcccCC-----H---------HHHHHHH-------hCCeEEEEECCHHHHHHHHhcCCC
Confidence            234455554          45555544     0         0012221       3468999999999999998632  


Q ss_pred             -CCCccc---HHHHHHHH---HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHH
Q psy16874        167 -DERYEQ---TDFQRKVA---ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       167 -~~~~~~---~~~~~~~~---~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                       ++....   .++.+.+.   +.+..+.+..-++||++ .++++++++|.+.
T Consensus       117 ~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        117 QRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHh
Confidence             222221   22233333   33333332223778866 5888888888764

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.55  E-value=3e-14  Score=107.05  Aligned_cols=162  Identities=17%  Similarity=0.226  Sum_probs=101.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH--HHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD--QAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   83 (227)
                      ++|.+|||+|++||||||++..|.+.|...|+.+..++        |+.++.-+..+-.++.  ..+...-.+      .
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD--------GDnvR~gL~~dLgFs~edR~eniRRva------e   86 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD--------GDNVRHGLNRDLGFSREDRIENIRRVA------E   86 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec--------ChhHhhcccCCCCCChHHHHHHHHHHH------H
Confidence            56889999999999999999999999999999998876        5666665554333332  222211111      2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      ..+-...+|-+|+++                   +.|  ||...+     +....+...  ..-+-||++||.+++.+|-
T Consensus        87 vAkll~daG~iviva-------------------~IS--P~r~~R-----~~aR~~~~~--~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          87 VAKLLADAGLIVIVA-------------------FIS--PYREDR-----QMARELLGE--GEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             HHHHHHHCCeEEEEE-------------------eeC--ccHHHH-----HHHHHHhCc--CceEEEEeCCCHHHHHhcC
Confidence            223334577777771                   111  111111     111111111  1347999999999999998


Q ss_pred             CCCCCCcc-----cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        164 GFGDERYE-----QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       164 ~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      .++  .|.     ....+.-+...|+.... +-+.+|++ .++++..+.|++.+.
T Consensus       139 pKG--LYkKAr~GeI~~fTGid~pYE~P~~-Pel~l~t~~~~vee~v~~i~~~l~  190 (197)
T COG0529         139 PKG--LYKKARAGEIKNFTGIDSPYEAPEN-PELHLDTDRNSVEECVEQILDLLK  190 (197)
T ss_pred             chH--HHHHHHcCCCCCCcCCCCCCCCCCC-CeeEeccccCCHHHHHHHHHHHHH
Confidence            753  221     12233344445655443 77889975 899999888888875

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.55  E-value=1.8e-14  Score=108.07  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcc----c--HHHHHHHH-HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYE----Q--TDFQRKVA-ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~----~--~~~~~~~~-~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      -+|++|.|+++|+++.+|+..|+-.-+    +  .+.+.-+. ++.+.+  .+++.||++ +|++++++.|.+++..
T Consensus        82 ~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~--~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936          82 DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF--EAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHHHHcc
Confidence            489999999999999999998653322    2  22222222 233333  268899955 9999999999999974

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.55  E-value=4.4e-14  Score=109.64  Aligned_cols=178  Identities=13%  Similarity=0.176  Sum_probs=94.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC------CCCCC--chHHHHHHHh--------------hcCCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP------DRTIS--TGHIIDEYLR--------------KKIEL   65 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~--------------~~~~~   65 (227)
                      .++|.|.||.||||||+|+.|+++|++.+++++.+...      ..+.+  -...+.....              ++..+
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv   83 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV   83 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence            58899999999999999999999999999987642210      00000  0112222221              11122


Q ss_pred             CHH--HHHHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccC-CCCCCCCcccchhhhhhhccCCCChhhhhcccCC
Q psy16874         66 PDQ--AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNL-DQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKG  142 (227)
Q Consensus        66 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~-~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (227)
                      ...  .......++.......++..+..-          |+.-.. ..|+|+|              |.+...+     -
T Consensus        84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~----------Qr~~a~~~~~~V~d--------------GRDiGTv-----V  134 (222)
T COG0283          84 SEEIRTEEVGNAASKVAAIPEVREALVKL----------QRAFAKNGPGIVAD--------------GRDIGTV-----V  134 (222)
T ss_pred             hhhhhhHHHHHHHHHHHccHHHHHHHHHH----------HHHHHhcCCCEEEe--------------cCCCcce-----E
Confidence            211  111222223222222232222110          001111 1334557              5554444     3


Q ss_pred             CCCCCEEEEeecCHHHHHHhcCCC-CCCc--cc-HHHHHHHHH-HHHHHhhC--------CeEEEcCC-CCHHHHHHHHH
Q psy16874        143 LPKPDAVLLFKLNEEALQRRKGFG-DERY--EQ-TDFQRKVAE-NYEKLKDN--------IWIDIDAD-KDIDTLGLIVK  208 (227)
Q Consensus       143 ~~~pd~vi~L~~~~e~~~~R~~~r-~~~~--~~-~~~~~~~~~-~~~~~~~~--------~~~~Id~~-~s~~~v~~~I~  208 (227)
                      +|..++.|||++++|+..+|..+. ....  .. ++.+..+.+ -+.+..+.        ..++||++ .+++||.++|.
T Consensus       135 ~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il  214 (222)
T COG0283         135 FPDAELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKIL  214 (222)
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHH
Confidence            567789999999999998876431 1111  10 222222221 22222211        67888877 99999999999


Q ss_pred             HHHHHH
Q psy16874        209 DIVIDT  214 (227)
Q Consensus       209 ~~i~~~  214 (227)
                      +.+.+.
T Consensus       215 ~~~~~~  220 (222)
T COG0283         215 ELIRQK  220 (222)
T ss_pred             HHHHHh
Confidence            988743

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.53  E-value=2.3e-13  Score=103.66  Aligned_cols=65  Identities=11%  Similarity=0.139  Sum_probs=45.4

Q ss_pred             CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh-hC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK-DN-IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~-~~-~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      ..+|||++|++++.+|+..|.......+.+......++... .. .+++||++++++++.+.|.+.|
T Consensus        95 ~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313        95 LHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             EEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECCCCHHHHHHHHHHHH
Confidence            35799999999999999877543333333333333333221 11 7899999999999999888776

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>KOG3354|consensus

Probab=99.53  E-value=4.7e-13  Score=98.32  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCH-----HHHHHHHHhhhhhhhhH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPD-----QAAHLLFSANRWEREPT   84 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   84 (227)
                      .|++.|++||||||+++.|++.|++..++-++++-|.       ..++ ...|..+.+     |+...         ...
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~-------NveK-M~~GipLnD~DR~pWL~~i---------~~~   76 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA-------NVEK-MTQGIPLNDDDRWPWLKKI---------AVE   76 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH-------HHHH-HhcCCCCCcccccHHHHHH---------HHH
Confidence            7999999999999999999999999888887776432       2222 233333322     22110         023


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCC---CEEEEeecCHHHHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKP---DAVLLFKLNEEALQR  161 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---d~vi~L~~~~e~~~~  161 (227)
                      ....+..|+.|+.+|++|++.-         |-+    .+...         . ..+....|   -.+|+|.++.|++.+
T Consensus        77 ~~~~l~~~q~vVlACSaLKk~Y---------RdI----Lr~sl---------~-~gk~~~~~~~~l~fi~l~~s~evi~~  133 (191)
T KOG3354|consen   77 LRKALASGQGVVLACSALKKKY---------RDI----LRHSL---------K-DGKPGKCPESQLHFILLSASFEVILK  133 (191)
T ss_pred             HHHHhhcCCeEEEEhHHHHHHH---------HHH----HHhhc---------c-cCCccCCccceEEEeeeeccHHHHHH
Confidence            3444557888888888887762         211    11100         0 01111122   369999999999999


Q ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        162 RKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       162 R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      |+..|...+...+.++.+.+..+....+  +++.|+.. .++++..+.|.+-+.
T Consensus       134 Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  134 RLKKRKGHFMPADLLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             HHhhcccccCCHHHHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence            9999988898888887777666655443  68999977 888887777766554

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.52  E-value=2.5e-13  Score=104.51  Aligned_cols=163  Identities=15%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHH--HHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA--HLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~   86 (227)
                      ++|+++|.|||||||+++.|++.|...+..+.+..+--         ...+..+..++-+-.  .-.+.-+.+   +.+.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy---------~~~i~~DEslpi~ke~yres~~ks~~---rlld   69 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY---------LRGILWDESLPILKEVYRESFLKSVE---RLLD   69 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh---------hhheecccccchHHHHHHHHHHHHHH---HHHH
Confidence            57999999999999999999999998887776654310         001111111111111  101111111   1233


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcc-cchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRY-SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .++. +..||+                 |-- +++++-|+...          ..+....+..+|||.+|++++.+|...
T Consensus        70 Salk-n~~VIv-----------------DdtNYyksmRrqL~c----------eak~~~tt~ciIyl~~plDtc~rrN~e  121 (261)
T COG4088          70 SALK-NYLVIV-----------------DDTNYYKSMRRQLAC----------EAKERKTTWCIIYLRTPLDTCLRRNRE  121 (261)
T ss_pred             HHhc-ceEEEE-----------------ecccHHHHHHHHHHH----------HHHhcCCceEEEEEccCHHHHHHhhcc
Confidence            3333 778888                 622 23344433322          123334677899999999999999976


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC-----CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN-----IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +++.+. .+.++.+.+.|++....     ++.+||.+....++.+.|+..+.
T Consensus       122 rgepip-~Evl~qly~RfEePn~~~rWDspll~id~~d~~t~~IDfiesvl~  172 (261)
T COG4088         122 RGEPIP-EEVLRQLYDRFEEPNPDRRWDSPLLVIDDSDVSTEVIDFIESVLR  172 (261)
T ss_pred             CCCCCC-HHHHHHHHHhhcCCCCCccccCceEEEecccccccchhHHHHHHH
Confidence            665554 56777777777766543     88999976666666666666665

>PRK04040 adenylate kinase; Provisional

Probab=99.51  E-value=1.3e-12  Score=101.79  Aligned_cols=67  Identities=9%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCC---CCCCccc---HHHHHHHHHHHHHHhh---C--CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGF---GDERYEQ---TDFQRKVAENYEKLKD---N--IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~---r~~~~~~---~~~~~~~~~~~~~~~~---~--~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .||.+|+|.+||+++.+|...   |.+.+++   .++.......|.....   +  ..+++|.++.+++++++|.++|
T Consensus       110 ~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        110 NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            889999999999999888763   3333443   3444444444433322   1  3455555555999999988876

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.51  E-value=2.6e-13  Score=106.40  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+|.++++++|++++.+|+..| +.++..+...++........  ....++|+++++++++..++.+.+..
T Consensus       124 ~~D~vi~V~a~~e~~~~Rl~~R-~~~s~e~~~~ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        124 LVDRVLVVDAPPETQLERLMAR-DGLSEEEAEAIIASQMPREEKLARADDVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             hCCeEEEEECCHHHHHHHHHHc-CCCCHHHHHHHHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999875 33444455555543222111  11458999999999999998887753

>PRK00625 shikimate kinase; Provisional

Probab=99.50  E-value=2.6e-13  Score=104.26  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +.|+++|+|||||||+++.|+++++..+++++.
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~   33 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD   33 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence            359999999999999999999999877766654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.49  E-value=9.3e-13  Score=101.61  Aligned_cols=73  Identities=14%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .|..+|+|++|++++.+|+.+|.....+.+.+..+.+.++.....  .|+.||++.+++++...+.+.+..+...
T Consensus        98 ~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  172 (176)
T PRK09825         98 PNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA  172 (176)
T ss_pred             CCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            566899999999999999988865555677777777766654332  7999999999999999999988876654

>PLN02199 shikimate kinase

Probab=99.49  E-value=4.8e-13  Score=109.48  Aligned_cols=164  Identities=13%  Similarity=0.134  Sum_probs=96.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      +++.|+++|++||||||+++.|++.+++..++++. +.+...+.    .+.+++.. |.......+.           +.
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~----sI~eIf~~~GE~~FR~~E~-----------e~  165 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT----SVAEIFVHHGENFFRGKET-----------DA  165 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCC----CHHHHHHHhCHHHHHHHHH-----------HH
Confidence            46789999999999999999999999887766654 22211122    22333332 2111111111           34


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.........||.          +++|+|++              ...+..+   .     --.+|||++|++++.+|+.
T Consensus       166 L~~L~~~~~~VIS----------tGGG~V~~--------------~~n~~~L---~-----~G~vV~Ldas~E~l~~RL~  213 (303)
T PLN02199        166 LKKLSSRYQVVVS----------TGGGAVIR--------------PINWKYM---H-----KGISIWLDVPLEALAHRIA  213 (303)
T ss_pred             HHHHHhcCCEEEE----------CCCcccCC--------------HHHHHHH---h-----CCeEEEEECCHHHHHHHHh
Confidence            4444444455554          67777777              1111222   1     1369999999999999997


Q ss_pred             C--C--CCCcc--c-HHH---HHHHHHHHHHHh---hCCeEEEc-------------CCCCHHHHHHHHHHHHHHHhhh
Q psy16874        165 F--G--DERYE--Q-TDF---QRKVAENYEKLK---DNIWIDID-------------ADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       165 ~--r--~~~~~--~-~~~---~~~~~~~~~~~~---~~~~~~Id-------------~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .  .  ++...  + +.+   .+.+.+.|++..   ..-.++|+             .+.++++++.+|.+.+..+++.
T Consensus       214 ~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~  292 (303)
T PLN02199        214 AVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK  292 (303)
T ss_pred             hcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence            4  1  12221  1 111   233333332221   11225566             3489999999999999999875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.48  E-value=3.4e-13  Score=112.97  Aligned_cols=167  Identities=14%  Similarity=0.089  Sum_probs=92.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      ++++..|+|+|++||||||+++.|++.++...++++...+...+..    +.+++.. +.....           ....+
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~----i~ei~~~~G~~~fr-----------~~e~~  194 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLS----VSEIFALYGQEGYR-----------RLERR  194 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCC----HHHHHHHHCHHHHH-----------HHHHH
Confidence            4567899999999999999999999999776554332111111111    1122111 100000           00112


Q ss_pred             HHHHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+...+.. +..|+.          .++|++.+     ...+         .++.       ...++|||++|++++.+|
T Consensus       195 ~l~~ll~~~~~~VI~----------~Ggg~v~~-----~~~~---------~~l~-------~~~~~V~L~a~~e~~~~R  243 (309)
T PRK08154        195 ALERLIAEHEEMVLA----------TGGGIVSE-----PATF---------DLLL-------SHCYTVWLKASPEEHMAR  243 (309)
T ss_pred             HHHHHHhhCCCEEEE----------CCCchhCC-----HHHH---------HHHH-------hCCEEEEEECCHHHHHHH
Confidence            34444433 334443          45555554     1100         1121       234799999999999999


Q ss_pred             cCCCCCC---cc---cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHhhh
Q psy16874        163 KGFGDER---YE---QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       163 ~~~r~~~---~~---~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l~~  217 (227)
                      +..+...   ..   ..+.+..+......+.....++||++ .+++++.+.|.+.+...+.-
T Consensus       244 l~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~~  305 (309)
T PRK08154        244 VRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSGLTVAQSLARLRELVRPALGL  305 (309)
T ss_pred             HhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence            9764311   11   12333333333333332233678877 49999999999999877653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.47  E-value=8.4e-13  Score=102.85  Aligned_cols=166  Identities=10%  Similarity=0.097  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe-E-EeeCCCCCC------CchHHHHHHHhhcCCCCHHHHHHHHHhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS-Q-FVNFPDRTI------STGHIIDEYLRKKIELPDQAAHLLFSANRW   79 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~-~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (227)
                      +.+|+|.||+||||||+++.|+..++.. +.. + .+..+....      ..++.....+..+ .+   .....+..+.+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~y   76 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQ-LLVAHRYITRPASAGSENHIALSEQEFFTRAGQN-LF---ALSWHANGLYY   76 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCe-EEEcCEECCCccchhHHhheeEcHHHHHHHHHCC-ch---hhHHHHhCCcc
Confidence            4579999999999999999998876531 111 1 111111000      0011111111111 10   00101111222


Q ss_pred             hhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHH
Q psy16874         80 EREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        80 ~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~  159 (227)
                      .....+...+..|..||+                 |     +..          .....+....+.+-.+|||++|++++
T Consensus        77 g~~~~~~~~l~~g~~VI~-----------------~-----G~~----------~~~~~~~~~~~~~~~vi~l~~s~e~l  124 (186)
T PRK10078         77 GVGIEIDLWLHAGFDVLV-----------------N-----GSR----------AHLPQARARYQSALLPVCLQVSPEIL  124 (186)
T ss_pred             CCcHHHHHHHhCCCEEEE-----------------e-----ChH----------HHHHHHHHHcCCCEEEEEEeCCHHHH
Confidence            333346667777877777                 5     110          11111112223455789999999999


Q ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        160 QRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       160 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .+|+..|.... ..+...++.. +........++||+++++++++++|.+.+.
T Consensus       125 ~~RL~~R~~~~-~~~i~~rl~r-~~~~~~ad~~vi~~~~s~ee~~~~i~~~l~  175 (186)
T PRK10078        125 RQRLENRGREN-ASEINARLAR-AARYQPQDCHTLNNDGSLRQSVDTLLTLLH  175 (186)
T ss_pred             HHHHHHhCCCC-HHHHHHHHHH-hhhhccCCEEEEeCCCCHHHHHHHHHHHHh
Confidence            99997553222 1233334322 111112266889989999999999988875

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.44  E-value=2.7e-12  Score=99.01  Aligned_cols=167  Identities=14%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeCCCCCCCchHHHHHHHhhc--CCCCHHHHHHHHHhhhhhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNFPDRTISTGHIIDEYLRKK--IELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +++|+++|+|||||||+++.|.+.++..  ++.++.+........... ...+..++  ...+.......|.+    ...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~----~~~   76 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-EGGIEFDGDGGVSPGPEFRLLEGA----WYE   76 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-ccccccCccCCcccchHHHHHHHH----HHH
Confidence            6789999999999999999999988653  334443221100000000 00000011  11111111111111    123


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhh-hhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA-FSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+...+..|..||+                 |--    +. +....     ..+..+   ...+-..|+|.||++++.+|
T Consensus        77 ~~~~~l~~G~~VIv-----------------D~~----~~~~~~~r-----~~~~~~---~~~~~~~v~l~~~~~~l~~R  127 (175)
T cd00227          77 AVAAMARAGANVIA-----------------DDV----FLGRAALQ-----DCWRSF---VGLDVLWVGVRCPGEVAEGR  127 (175)
T ss_pred             HHHHHHhCCCcEEE-----------------eee----ccCCHHHH-----HHHHHh---cCCCEEEEEEECCHHHHHHH
Confidence            45567788988888                 611    11 00000     111111   12355799999999999999


Q ss_pred             cCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        163 KGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       163 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      ..+|++...  .......+.+... ....++||++ .+++++++.|.+.|
T Consensus       128 ~~~R~~~~~--~~~~~~~~~~~~~-~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         128 ETARGDRVP--GQARKQARVVHAG-VEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             HHhcCCccc--hHHHHHHHHhcCC-CcceEEEECCCCCHHHHHHHHHHhc
Confidence            987654421  1111112222221 1157899988 57999988888765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK06217 hypothetical protein; Validated

Probab=99.44  E-value=2.9e-12  Score=99.56  Aligned_cols=149  Identities=17%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      +.|+|.|++||||||+++.|++.++..+++.+. +..|. +.+....          .+....           ...+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~~~~----------~~~~~~-----------~~~~~~   59 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPFTTK----------RPPEER-----------LRLLLE   59 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCcccc----------CCHHHH-----------HHHHHH
Confidence            459999999999999999999999877766654 33332 1111110          011100           022222


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+..+..+|+                 |     +.+..         +...   ....+|.+|||++|++++.+|+..|.
T Consensus        60 ~~~~~~~~vi-----------------~-----G~~~~---------~~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         60 DLRPREGWVL-----------------S-----GSALG---------WGDP---LEPLFDLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             HHhcCCCEEE-----------------E-----ccHHH---------HHHH---HHhhCCEEEEEECCHHHHHHHHHcCc
Confidence            3323323344                 5     33221         1111   11257899999999999999997653


Q ss_pred             CC-----------cc--cHHHHHHH------------HHHHHHHhh---CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        168 ER-----------YE--QTDFQRKV------------AENYEKLKD---NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       168 ~~-----------~~--~~~~~~~~------------~~~~~~~~~---~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ..           .+  ..++++..            ...++.+..   .+++.+++..++++..++|.+.|..
T Consensus       106 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        106 FQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             ccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence            11           01  12222221            112222322   2677889999999988888888753

>PRK01184 hypothetical protein; Provisional

Probab=99.43  E-value=9.2e-12  Score=96.72  Aligned_cols=72  Identities=7%  Similarity=0.044  Sum_probs=46.5

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCC--Cccc-HHHHHHHHHHH----HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDE--RYEQ-TDFQRKVAENY----EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~--~~~~-~~~~~~~~~~~----~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      .+..+|++++|++++.+|+..|+.  +..+ .+...+.....    .+.....-++||++++++++..+|.+.+..+++
T Consensus       103 ~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~  181 (184)
T PRK01184        103 EDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERILR  181 (184)
T ss_pred             cccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence            466899999999999999976532  1112 22333332211    111111346788889999999999998886654

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.43  E-value=1.2e-12  Score=117.41  Aligned_cols=162  Identities=12%  Similarity=0.107  Sum_probs=96.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+...|+++|++||||||+++.|++.|++..++.+. +.+.     .|..+.+++.. |.......+.           +
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~-----~g~si~eif~~~Ge~~FR~~E~-----------~   67 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE-----IGMSIPSYFEEYGEPAFREVEA-----------D   67 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH-----HCcCHHHHHHHHHHHHHHHHHH-----------H
Confidence            445679999999999999999999999887777654 2211     12233444432 2211111211           3


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+.+.+.....||.          +++|++++     .         .....+..+.+.   --.+|||++|++++.+|+
T Consensus        68 ~l~~~~~~~~~VIs----------~GGG~v~~-----~---------~n~~~L~~~~~~---~g~vv~L~~~~~~l~~Rl  120 (542)
T PRK14021         68 VVADMLEDFDGIFS----------LGGGAPMT-----P---------STQHALASYIAH---GGRVVYLDADPKEAMERA  120 (542)
T ss_pred             HHHHHHhcCCeEEE----------CCCchhCC-----H---------HHHHHHHHHHhc---CCEEEEEECCHHHHHHHH
Confidence            44444444455554          78888887     1         111222211111   137999999999999998


Q ss_pred             CCCC--CCccc--HHHHHHH----HHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        164 GFGD--ERYEQ--TDFQRKV----AENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       164 ~~r~--~~~~~--~~~~~~~----~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      ..+.  +.+..  .+.+..+    ...|++.+.   ++||++ .+++++.++|.+.+..
T Consensus       121 ~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad---~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        121 NRGGGRPMLNGDANKRWKKLFKQRDPVFRQVAN---VHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             hCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHHHh
Confidence            6432  22321  2222222    334554443   677765 7999999999888863

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.42  E-value=4.1e-12  Score=99.59  Aligned_cols=167  Identities=13%  Similarity=0.072  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee-CC-CCCCCchHHHHHHHhh-----cC-CCCHHHHHHHHHhhhhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN-FP-DRTISTGHIIDEYLRK-----KI-ELPDQAAHLLFSANRWE   80 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~   80 (227)
                      ++|+|+|++||||||+++.|++.++...++++.+. +. ..+.+....+.+.+..     .+ .++........+.+...
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            47999999999999999999998888787776532 21 1134444555544432     22 33433322222222111


Q ss_pred             ---hhhHHHHHH--------Hc---CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCC
Q psy16874         81 ---REPTLTKLI--------EQ---GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKP  146 (227)
Q Consensus        81 ---~~~~i~~~~--------~~---~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  146 (227)
                         ....++|.+        ..   ...+++                 |      .           +.+.+... ....
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~-----------------e------~-----------pll~E~~~-~~~~  126 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVL-----------------V------I-----------PLLFEAKL-TDLC  126 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEE-----------------E------e-----------HHhcCcch-HhCC
Confidence               111223321        11   123333                 3      1           11111100 1146


Q ss_pred             CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      |.+++++||++++.+|+..|. .++..+...++...+....  ....++|+++++++++..++.+.+
T Consensus       127 D~ii~V~a~~e~r~~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        127 SEIWVVDCSPEQQLQRLIKRD-GLTEEEAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             CEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence            899999999999999998763 3443445555544221111  114578999999999999888765

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.41  E-value=1.6e-12  Score=98.87  Aligned_cols=166  Identities=17%  Similarity=0.281  Sum_probs=98.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      .+|++|+|.||+|+||||+++.|-+.. ...+++-. ++.|+.+..-|        +.++.++..+. +..   ...+..
T Consensus         2 ~~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~-fLE---~a~~~g   76 (191)
T COG0194           2 SKGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDE-FLE---WAEYHG   76 (191)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCC-cEE---EEEEcC
Confidence            369999999999999999999999988 44666644 67665544322        23344444332 111   111112


Q ss_pred             hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec-
Q psy16874         77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-  154 (227)
Q Consensus        77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~-  154 (227)
                      +.+.. ...+.+.+..|..|+.                 |               .+++-..++....| +...||+.+ 
T Consensus        77 nyYGT~~~~ve~~~~~G~~vil-----------------d---------------Id~qGa~qvk~~~p-~~v~IFi~pP  123 (191)
T COG0194          77 NYYGTSREPVEQALAEGKDVIL-----------------D---------------IDVQGALQVKKKMP-NAVSIFILPP  123 (191)
T ss_pred             CcccCcHHHHHHHHhcCCeEEE-----------------E---------------EehHHHHHHHHhCC-CeEEEEEcCC
Confidence            23332 2456677788888887                 4               22222233333443 334555554 


Q ss_pred             CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +.+++.+|+..|+...+ ....+++..++.+....   ..++||.  +.+.+++++..++.
T Consensus       124 s~eeL~~RL~~Rgtds~-e~I~~Rl~~a~~Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~  181 (191)
T COG0194         124 SLEELERRLKGRGTDSE-EVIARRLENAKKEISHADEFDYVIVND--DLEKALEELKSIIL  181 (191)
T ss_pred             CHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHHHHHhCCEEEECc--cHHHHHHHHHHHHH
Confidence            45788889986654332 33445565555555433   6666655  58888888888875

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.41  E-value=6.8e-12  Score=110.68  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      ++++|+|.|++||||||+++.|+++|+...++.+.
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~  317 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGA  317 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCc
Confidence            67899999999999999999999999877776544

>PRK08356 hypothetical protein; Provisional

Probab=99.41  E-value=1.7e-11  Score=96.22  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=42.0

Q ss_pred             CEEEEeecCHHHHHHhcCCCCCC----cccHHHHHHHHH----HHHHH--hhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDER----YEQTDFQRKVAE----NYEKL--KDNIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~----~~~~~~~~~~~~----~~~~~--~~~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      ..+|||++|++++.+|+..|...    ..+.+.+.++..    .|...  ...--++|+++++++++..+|.+++..+
T Consensus       116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL  193 (195)
T ss_pred             CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence            47999999999999999765322    122333333321    12111  0112245555789999999999888754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.40  E-value=2.1e-12  Score=99.90  Aligned_cols=64  Identities=11%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ..+|||++|++++.+|+..|+.... .....++.. +....  ...+++|+++++++++.++|.+.+.
T Consensus       112 ~~~i~l~~~~~~~~~Rl~~R~~~~~-~~~~~rl~~-~~~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       112 LLVVNITASPDVLAQRLAARGRESR-EEIEERLAR-SARFAAAPADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             cEEEEEECCHHHHHHHHHHcCCCCH-HHHHHHHHH-HhhcccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            3799999999999999986543221 233334432 22221  1267778999999999999988774

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.40  E-value=8.3e-12  Score=98.92  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      .+|.+|++.+|++++.+|+.+|+.. ...+..+++...+....  ....++|+++++++++..+|.+.+..++
T Consensus       133 ~~d~ii~V~a~~e~~~~Rl~~R~~~-s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        133 GLDFIVVVAADTELRLERAVQRGMG-SREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcCCC-CHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            4699999999999999999876432 32444455543221111  1145788999999999999998887665

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.40  E-value=7.3e-12  Score=97.42  Aligned_cols=169  Identities=12%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      .+|++|+|+||+||||||+++.|.+.++...+++.+ ++.|..+..-|        +.+...+..+.- -.+.   .|.-
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f-~e~~---~~~g   77 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEF-LEWA---EVHD   77 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCe-EEEE---EECC
Confidence            358999999999999999999999876544444433 55443332211        122223222220 0000   0000


Q ss_pred             hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec-
Q psy16874         77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL-  154 (227)
Q Consensus        77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~-  154 (227)
                      ..+.. ...+...+..|.++|+                 |               .+.+-+..+....+.+-++||+.+ 
T Consensus        78 ~~YGt~~~~i~~~~~~g~~~i~-----------------d---------------~~~~g~~~l~~~~~~~~~~Ifi~pp  125 (186)
T PRK14737         78 NYYGTPKAFIEDAFKEGRSAIM-----------------D---------------IDVQGAKIIKEKFPERIVTIFIEPP  125 (186)
T ss_pred             eeecCcHHHHHHHHHcCCeEEE-----------------E---------------cCHHHHHHHHHhCCCCeEEEEEECC
Confidence            11111 1357777888888887                 5               111222222222222226888887 


Q ss_pred             CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-C-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-N-IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +.+++.+|+..|+... ..+...++..+..+... . .-++|+++ +++++..++.++|.
T Consensus       126 s~e~l~~RL~~R~~~s-~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        126 SEEEWEERLIHRGTDS-EESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             CHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHh
Confidence            4689999997764432 23344444443322221 1 34566666 89999988888775

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.40  E-value=1.8e-12  Score=114.52  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      |.|+|+|++||||||+++.|++.++...++.+...+...+.+    +.+++.. +.......+           .+.+.+
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~----i~~i~~~~Ge~~fr~~E-----------~~~l~~   65 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRS----VRRIFEEDGEEYFRLKE-----------KELLRE   65 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCC----HHHHHHHhhhHHHHHHH-----------HHHHHH
Confidence            359999999999999999999999876666554221111111    2222222 111111111           133444


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .......|+.          +++|+|+|.              .....+.        ...+|||++|++++.+|+..+.
T Consensus        66 l~~~~~~Vis----------~Gggvv~~~--------------~~r~~l~--------~~~vI~L~as~e~l~~Rl~~~~  113 (488)
T PRK13951         66 LVERDNVVVA----------TGGGVVIDP--------------ENRELLK--------KEKTLFLYAPPEVLMERVTTEN  113 (488)
T ss_pred             HhhcCCEEEE----------CCCccccCh--------------HHHHHHh--------cCeEEEEECCHHHHHHHhccCC
Confidence            4444455554          688888882              1112231        1359999999999999997543


Q ss_pred             CC-cccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHH
Q psy16874        168 ER-YEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIV  207 (227)
Q Consensus       168 ~~-~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I  207 (227)
                      +. ....  .+++.+.|+....-  .+.+||++ .+++++..+|
T Consensus       114 RPLl~~~--~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~~~~i  155 (488)
T PRK13951        114 RPLLREG--KERIREIWERRKQFYTEFRGIDTSKLNEWETTALV  155 (488)
T ss_pred             CCCcccc--HHHHHHHHHHHHHHHhcccEEECCCCCHHHHHHHH
Confidence            22 2211  12233333322211  34678876 6676665544

>PRK04182 cytidylate kinase; Provisional

Probab=99.40  E-value=2.7e-12  Score=99.07  Aligned_cols=71  Identities=15%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCC-ccc-HHHHH----HHHHHHHHHhh-------CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDER-YEQ-TDFQR----KVAENYEKLKD-------NIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~-~~~-~~~~~----~~~~~~~~~~~-------~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      ++++|||++|++++.+|+..|... ... .....    .-...|..+..       ...++||++ .+++++.+.|.+.+
T Consensus        92 ~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~  171 (180)
T PRK04182         92 ADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAI  171 (180)
T ss_pred             CCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHH
Confidence            789999999999999999765432 111 11111    11123333321       134788876 79999999999988


Q ss_pred             HHHhh
Q psy16874        212 IDTIK  216 (227)
Q Consensus       212 ~~~l~  216 (227)
                      .....
T Consensus       172 ~~~~~  176 (180)
T PRK04182        172 DKLLK  176 (180)
T ss_pred             HHHhc
Confidence            75443

>PLN02422 dephospho-CoA kinase

Probab=99.39  E-value=4.4e-12  Score=101.36  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH--HhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK--LKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      ..|.+|+++||+++..+|+.+|. .+...+...++...+..  ......++|+++++.+++..++.+.+..++
T Consensus       125 ~~D~vI~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        125 WTKPVVVVWVDPETQLERLMARD-GLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            46999999999999999998764 34334555555443322  111145799999999999999998887764

>KOG3078|consensus

Probab=99.39  E-value=3e-12  Score=101.26  Aligned_cols=173  Identities=20%  Similarity=0.217  Sum_probs=120.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++.-.++.|+|||||+|++..|.+.++..|++..+ ++. ...+++.|..++.++..+..+++....           ..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~-----------~~   82 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVV-----------RL   82 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHH-----------HH
Confidence            46678999999999999999999999999988766 443 224677888889999999988887766           32


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +...+...              .+.+||++|     ++|++..+.    ..   +......+|.+|.|.+|.+.+.+|+.
T Consensus        83 l~~~l~~~--------------~~~~~~ild-----g~Prt~~qa----~~---l~~~~~~~d~Vi~l~vp~~~L~~ri~  136 (235)
T KOG3078|consen   83 LEKRLENP--------------RCQKGFILD-----GFPRTVQQA----EE---LLDRIAQIDLVINLKVPEEVLVDRIT  136 (235)
T ss_pred             HHhhcccc--------------ccccccccC-----CCCcchHHH----HH---HHHccCCcceEEEecCCHHHHHHHHh
Confidence            22233332              357889999     888776642    11   23344588999999999999999985


Q ss_pred             CC------C---------------C------Cccc----HHHHHHHHHHHHHHhhC---------CeEEEcCCCCHHHHH
Q psy16874        165 FG------D---------------E------RYEQ----TDFQRKVAENYEKLKDN---------IWIDIDADKDIDTLG  204 (227)
Q Consensus       165 ~r------~---------------~------~~~~----~~~~~~~~~~~~~~~~~---------~~~~Id~~~s~~~v~  204 (227)
                      .|      +               +      ..++    .+..+...+.|.+....         .+..+++.. +++++
T Consensus       137 ~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~  215 (235)
T KOG3078|consen  137 GRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVF  215 (235)
T ss_pred             cccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhH
Confidence            43      0               0      1111    23333334445443321         577777777 89999


Q ss_pred             HHHHHHHHHHhhh
Q psy16874        205 LIVKDIVIDTIKK  217 (227)
Q Consensus       205 ~~I~~~i~~~l~~  217 (227)
                      ..|...+...+.+
T Consensus       216 ~~v~~~l~~~~~~  228 (235)
T KOG3078|consen  216 PNVYAFLSKKVPE  228 (235)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999888766644

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.39  E-value=4.4e-12  Score=96.68  Aligned_cols=69  Identities=9%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .|-.+|+|++|++++.+|+..|.+.+.+.+.+..+...++.+...  .+++||++.+++++.+.+...+.+
T Consensus        90 ~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545         90 PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             CCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            566899999999999999988765455677777777677655443  489999999999999988888753

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.39  E-value=2.8e-11  Score=95.58  Aligned_cols=171  Identities=18%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-EeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFS   75 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   75 (227)
                      ++++.+|+|.|++||||||+++.|...++..++.+. .+++|..+...        .+.+...+..+..+...    .+.
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWA----EVF   77 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEE----EEC
Confidence            356899999999999999999999998763233322 24445432211        11222222222110000    000


Q ss_pred             hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874         76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL  154 (227)
Q Consensus        76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~  154 (227)
                      .+.+.. ...+...+..|.++++                 |     .-+          .....+....+.+-.++++.+
T Consensus        78 ~~~y~~~~~~i~~~l~~g~~vi~-----------------d-----l~~----------~g~~~l~~~~~~~~~I~i~~~  125 (205)
T PRK00300         78 GNYYGTPRSPVEEALAAGKDVLL-----------------E-----IDW----------QGARQVKKKMPDAVSIFILPP  125 (205)
T ss_pred             CccccCcHHHHHHHHHcCCeEEE-----------------e-----CCH----------HHHHHHHHhCCCcEEEEEECc
Confidence            011111 2456777788888887                 5     101          111111122223333555567


Q ss_pred             CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH---hhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      +.+++.+|+..|+... .....+++.......   .....+++|  .+++++..++.+.+...
T Consensus       126 s~~~l~~Rl~~R~~~~-~~~i~~rl~~~~~~~~~~~~~d~vi~n--~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        126 SLEELERRLRGRGTDS-EEVIARRLAKAREEIAHASEYDYVIVN--DDLDTALEELKAIIRAE  185 (205)
T ss_pred             CHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhHHhCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence            7899999998765322 122223333222211   112455543  38999999999999875

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.39  E-value=8.5e-12  Score=98.22  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      .+|.+||+++|+++..+|+..|+ .+...+...++........  ....++||++++++++..++...+..+++
T Consensus       125 ~~D~vi~V~a~~e~ri~Rl~~R~-g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        125 KMDLVVVVDVDVEERVRRLVEKR-GLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            57999999999999999997653 3443444445543222111  11457999999999999999988876654

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.37  E-value=7.6e-12  Score=98.31  Aligned_cols=69  Identities=13%  Similarity=-0.002  Sum_probs=48.9

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hCCeEEEcCCC-CHHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DNIWIDIDADK-DIDTLGLIVKDIVIDT  214 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~-s~~~v~~~I~~~i~~~  214 (227)
                      ..|.++++.||+++..+|+..|+ .+...+...++........  ...-++||+++ +.+++..++.+.+...
T Consensus       128 ~~D~vi~V~a~~e~ri~Rl~~Rd-~~s~~~a~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        128 YLKKVIVIKADLETRIRRLMERD-GKNRQQAVAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence            46899999999999999998753 3344455555544221111  11348999999 9999999998888755

>KOG3347|consensus

Probab=99.36  E-value=5.8e-12  Score=92.11  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhhc---CCCCHHHHHHHHHhhhhhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKK---IELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+.|+|+|.||+||||+++.|++.++..+|.+.. .++..        +..-+...   .-++.....           +
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~--------l~~gyDE~y~c~i~DEdkv~-----------D   67 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN--------LYEGYDEEYKCHILDEDKVL-----------D   67 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc--------chhcccccccCccccHHHHH-----------H
Confidence            4569999999999999999999999998888755 33211        11111110   011222222           5


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+.+.+..|.+|+                  |.+..+-||         ..|+          |+|++|++|.++++.|+
T Consensus        68 ~Le~~m~~Gg~IV------------------DyHgCd~Fp---------erwf----------dlVvVLr~~~s~LY~RL  110 (176)
T KOG3347|consen   68 ELEPLMIEGGNIV------------------DYHGCDFFP---------ERWF----------DLVVVLRTPNSVLYDRL  110 (176)
T ss_pred             HHHHHHhcCCcEE------------------eecccCccc---------hhhe----------eEEEEEecCchHHHHHH
Confidence            6666666665443                  744443333         2444          79999999999999999


Q ss_pred             CCCCCC---cc-c--HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        164 GFGDER---YE-Q--TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       164 ~~r~~~---~~-~--~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      ..|+=.   +. +  -+.+..+.+...+.... .+..+.+ .+.+++.+.|-+++
T Consensus       111 ~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s-~~~Eem~~ni~ri~  164 (176)
T KOG3347|consen  111 KSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQS-ETKEEMESNISRIL  164 (176)
T ss_pred             HHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCc-CCHHHHHHHHHHHH
Confidence            876411   11 1  34455555544444443 4444444 44577666654444

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.36  E-value=3.7e-12  Score=106.36  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEeeCCCCCCCchHHHHHHHhhc---CC-CCHHHHHHHHHhhhhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRKK---IE-LPDQAAHLLFSANRWERE   82 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~   82 (227)
                      +++|++.|+|||||||+++.|++++ +..+++.+.+++.            .....   .. .........    .....
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~   65 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQS------------LFGHGEWGEYKFTKEKEDLV----TKAQE   65 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHH------------hcCCCcccccccChHHHHHH----HHHHH
Confidence            4689999999999999999999998 4544444332211            11100   00 010011100    00111


Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      ..+..++..|..+|+                 |-+..+...+         ..+..+.......-.+|+|++|.+++.+|
T Consensus        66 ~~~~~~l~~g~~vIi-----------------d~~~~~~~~~---------~~~~~la~~~~~~~~~v~l~~~~e~~~~R  119 (300)
T PHA02530         66 AAALAALKSGKSVII-----------------SDTNLNPERR---------RKWKELAKELGAEFEEKVFDVPVEELVKR  119 (300)
T ss_pred             HHHHHHHHcCCeEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCeEEEEEeCCCHHHHHHH
Confidence            344555667777777                 7333221111         22222222222223479999999999999


Q ss_pred             cCCCCCCcccHHHHHHHHHHHHHHhh------------CCeEEEcCCCCHHH
Q psy16874        163 KGFGDERYEQTDFQRKVAENYEKLKD------------NIWIDIDADKDIDT  202 (227)
Q Consensus       163 ~~~r~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Id~~~s~~~  202 (227)
                      +..|+....+.+.+..+.+.++.+..            ...+++|.++++.+
T Consensus       120 ~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        120 NRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             HHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence            98875444456666655555555432            15788888877654

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.35  E-value=1.7e-11  Score=98.84  Aligned_cols=70  Identities=17%  Similarity=0.090  Sum_probs=48.4

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCC--CCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDAD--KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~--~s~~~v~~~I~~~i~~~l  215 (227)
                      ..|.++++.+|.++..+|+..|+ .+...+...++.........  ..-++|+++  ++++++..+|.+.+..+.
T Consensus       136 ~~D~iv~V~a~~e~ri~RL~~R~-g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~  209 (244)
T PTZ00451        136 FVSASVVVSCSEERQIERLRKRN-GFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMS  209 (244)
T ss_pred             cCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            45999999999999999998763 34434455555432211111  134678888  999999999999886543

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.35  E-value=1.6e-11  Score=95.34  Aligned_cols=162  Identities=16%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+|+|++||||||+++.|...+...+..+..+.        ++.++..+..+..+.+......+.    ......
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~--------~d~~r~~l~~~~~~~~~~~~~~~~----~~~~~~   83 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD--------GDNVRHGLNKDLGFSEEDRKENIR----RIGEVA   83 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC--------ChHHHhhhccccCCCHHHHHHHHH----HHHHHH
Confidence            56889999999999999999999999987676655543        112222222221122211111010    001233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+..|.+||+                 |-    .+++...+     ..+..+...  .+..+|||++|++++.+|...
T Consensus        84 ~~~~~~G~~VI~-----------------d~----~~~~~~~r-----~~~~~~~~~--~~~~~v~l~~~~e~~~~R~~~  135 (184)
T TIGR00455        84 KLFVRNGIIVIT-----------------SF----ISPYRADR-----QMVRELIEK--GEFIEVFVDCPLEVCEQRDPK  135 (184)
T ss_pred             HHHHcCCCEEEE-----------------ec----CCCCHHHH-----HHHHHhCcC--CCeEEEEEeCCHHHHHHhCch
Confidence            344567888888                 51    11111111     222222222  245789999999999999432


Q ss_pred             CCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHH
Q psy16874        166 GDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       166 r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                        +.+..     ...+......|+.+. ...++||++ .++++++++|.+.
T Consensus       136 --~l~~~~~~~~~~~l~~~~~~y~~p~-~adl~Idt~~~~~~~~~~~i~~~  183 (184)
T TIGR00455       136 --GLYKKARNGEIKGFTGIDSPYEAPE-NPEVVLDTDQNDREECVGQIIEK  183 (184)
T ss_pred             --hHHHHHhcCCccCcccccCCCCCCC-CCcEEEECCCCCHHHHHHHHHHh
Confidence              11111     011112222343211 156899876 6899988887764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.35  E-value=1.2e-11  Score=92.78  Aligned_cols=147  Identities=21%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHH--HHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQ--AAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   84 (227)
                      +|.+|+|+|.+||||||++..|.++|...++++..+.        |+.++..+.++-.+..+  .+...    |..  ..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD--------gD~lR~~l~~dl~fs~~dR~e~~r----r~~--~~   66 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD--------GDNLRHGLNADLGFSKEDREENIR----RIA--EV   66 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE--------HHHHCTTTTTT--SSHHHHHHHHH----HHH--HH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec--------CcchhhccCCCCCCCHHHHHHHHH----HHH--HH
Confidence            4889999999999999999999999999999998877        45554444333222221  11110    010  22


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ..-...+|.+||+                 .  .  .-|+...+     ++..+....  ..-+.||++||.+++.+|-.
T Consensus        67 A~ll~~~G~ivIv-----------------a--~--isp~~~~R-----~~~R~~~~~--~~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   67 AKLLADQGIIVIV-----------------A--F--ISPYREDR-----EWARELIPN--ERFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             HHHHHHTTSEEEE-----------------E--------SHHHH-----HHHHHHHHT--TEEEEEEEES-HHHHHHHTT
T ss_pred             HHHHHhCCCeEEE-----------------e--e--ccCchHHH-----HHHHHhCCc--CceEEEEeCCCHHHHHHhCc
Confidence            2334568888888                 3  0  11111111     222222111  13479999999999999986


Q ss_pred             CCCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCCC
Q psy16874        165 FGDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDADK  198 (227)
Q Consensus       165 ~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~~  198 (227)
                      ++  .|..     ...+--+...|+.... +-++||++.
T Consensus       119 Kg--lY~ka~~g~i~~~~Gvd~~ye~P~~-pdl~idt~~  154 (156)
T PF01583_consen  119 KG--LYAKARAGEIKNFTGVDDPYEEPLN-PDLVIDTDK  154 (156)
T ss_dssp             TS--HHHHHHTTSSSSHTTTSS-----SS--SEEEETTT
T ss_pred             hh--HHHHhhCCCcCCccccccCCCCCCC-CeEEEeCCC
Confidence            52  2221     0111122335555433 567888764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.35  E-value=8.9e-12  Score=93.77  Aligned_cols=31  Identities=29%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      |+|+|++||||||+++.|++.+++..++.+.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~   32 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDE   32 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence            8999999999999999999999877666544

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.34  E-value=2.6e-11  Score=99.40  Aligned_cols=147  Identities=15%  Similarity=0.182  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      ++|+|+|.|||||||+++.|++.+...+..+..+...        .+.  +..........+..    .|......+...
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~--------~~~--~~~~~y~~~~~Ek~----~R~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD--------SLG--IDRNDYADSKKEKE----ARGSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH--------HHH---TTSSS--GGGHHH----HHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc--------ccc--cchhhhhchhhhHH----HHHHHHHHHHHh
Confidence            4899999999999999999999999988888776631        111  11111111111110    111122355556


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCc-ccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDR-YSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      +..+.+||+                 |. .++.++-|..++          +.+....+..+||+++|.+.+.+|-..|+
T Consensus        68 ls~~~iVI~-----------------Dd~nYiKg~RYelyc----------lAr~~~~~~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   68 LSKDTIVIL-----------------DDNNYIKGMRYELYC----------LARAYGTTFCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             HTT-SEEEE------------------S---SHHHHHHHHH----------HHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred             hccCeEEEE-----------------eCCchHHHHHHHHHH----------HHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence            677888988                 62 233444443332          34444466789999999999999997765


Q ss_pred             CC-cccHHHHHHHHHHHHHHhhC-----CeEEEcC
Q psy16874        168 ER-YEQTDFQRKVAENYEKLKDN-----IWIDIDA  196 (227)
Q Consensus       168 ~~-~~~~~~~~~~~~~~~~~~~~-----~~~~Id~  196 (227)
                      .. .-..+.+..+...|+.....     +.++|+.
T Consensus       121 ~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~  155 (270)
T PF08433_consen  121 EPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS  155 (270)
T ss_dssp             -S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence            44 22477888888888887653     6788884

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.33  E-value=1.3e-11  Score=95.48  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=88.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE-EeeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ-FVNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      +.+|+|.|++||||||+++.|++.++..++.+. ..++|..+...+        ..+...+..+..+...    .+....
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   76 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWA----EVHGNY   76 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEE----EECCee
Confidence            468999999999999999999997765555543 355554322111        1222222222111000    000111


Q ss_pred             hhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHH
Q psy16874         79 WER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEE  157 (227)
Q Consensus        79 ~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e  157 (227)
                      +.. ...+.+.+..|.++++                 |.-      ..         -...+....+.+..++++.++.+
T Consensus        77 y~~~~~~i~~~~~~g~~vi~-----------------d~~------~~---------~~~~~~~~~~~~~~i~~~~~~~e  124 (180)
T TIGR03263        77 YGTPKSPVEEALAAGKDVLL-----------------EID------VQ---------GARQVKKKFPDAVSIFILPPSLE  124 (180)
T ss_pred             eCCcHHHHHHHHHCCCeEEE-----------------ECC------HH---------HHHHHHHhCCCcEEEEEECCCHH
Confidence            111 2467777888888888                 611      11         11112222234555666678889


Q ss_pred             HHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        158 ALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       158 ~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ++.+|+..|++.. .....+++...-.+...  ..-++|+++ +.++++.++.+.+.
T Consensus       125 ~~~~Rl~~r~~~~-~~~i~~rl~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       125 ELERRLRKRGTDS-EEVIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELKSIIL  179 (180)
T ss_pred             HHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccccCcEEEECC-CHHHHHHHHHHHHh
Confidence            9999998664432 22233333332222211  122444444 78999888887763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.32  E-value=1.9e-11  Score=95.83  Aligned_cols=72  Identities=17%  Similarity=0.064  Sum_probs=49.8

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHH--HHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE--KLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      ..|.++++++|++++.+|+..|+ .....+...++.....  ......-++|+++++++++..++.+.+..+++.
T Consensus       121 ~~D~vi~V~a~~e~r~~RL~~R~-g~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~  194 (196)
T PRK14732        121 LCDATVTVDSDPEESILRTISRD-GMKKEDVLARIASQLPITEKLKRADYIVRNDGNREGLKEECKILYSTLLKK  194 (196)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            46999999999999999998763 3333444444433211  111114478899999999999999888776653

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.32  E-value=5.6e-11  Score=88.67  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             CCCCCEEEEeecCHHHHHHhcCCC---CCCcccHHHHH---HHHH----HHHHHhhCCeEEEc-CCCCHHHHHHHHHHHH
Q psy16874        143 LPKPDAVLLFKLNEEALQRRKGFG---DERYEQTDFQR---KVAE----NYEKLKDNIWIDID-ADKDIDTLGLIVKDIV  211 (227)
Q Consensus       143 ~~~pd~vi~L~~~~e~~~~R~~~r---~~~~~~~~~~~---~~~~----~~~~~~~~~~~~Id-~~~s~~~v~~~I~~~i  211 (227)
                      ...||.++.|.+||+++..|..+.   ..++++.+.++   ....    +|.-.....+.+|. .++.+++.+.+|...|
T Consensus       107 ~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l  186 (189)
T COG2019         107 ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELL  186 (189)
T ss_pred             hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            348999999999999987776432   23344322222   2221    33333333555554 4589999999999887


Q ss_pred             H
Q psy16874        212 I  212 (227)
Q Consensus       212 ~  212 (227)
                      +
T Consensus       187 ~  187 (189)
T COG2019         187 D  187 (189)
T ss_pred             h
Confidence            6

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.32  E-value=1.9e-11  Score=91.74  Aligned_cols=51  Identities=18%  Similarity=0.115  Sum_probs=35.4

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEc
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDID  195 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id  195 (227)
                      .+..+|+|++|++++.+|+..|.....+...+..+.+.++.....  +.++||
T Consensus        97 ~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  149 (150)
T cd02021          97 PRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPGEDEEDVIVID  149 (150)
T ss_pred             CCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCCeEEcc
Confidence            456799999999999999988754443455566666666655432  566665

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.29  E-value=2.9e-11  Score=92.54  Aligned_cols=31  Identities=39%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      ++|+|+|++||||||+++.|++.++...++.
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~   31 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISA   31 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence            4799999999999999999999887655543

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=99.29  E-value=6.3e-11  Score=94.41  Aligned_cols=150  Identities=15%  Similarity=0.103  Sum_probs=97.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.|.+|+|.|.+||||+.+++.|.+.++.+|+.|..+..|......-..+                           ...
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~~p~l---------------------------wRf   81 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERTQWYF---------------------------QRY   81 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHcChHH---------------------------HHH
Confidence            45889999999999999999999999999999998888775211111112                           222


Q ss_pred             HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChh-------hhhccc---CCCCCCCEEEEeec
Q psy16874         86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDIS-------WCFQPE---KGLPKPDAVLLFKL  154 (227)
Q Consensus        86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~pd~vi~L~~  154 (227)
                      ...++ .|.+.|.                 ||+||............+..       -+..++   ......-+.|||++
T Consensus        82 w~~lP~~G~i~IF-----------------~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI  144 (230)
T TIGR03707        82 VQHLPAAGEIVLF-----------------DRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV  144 (230)
T ss_pred             HHhCCCCCeEEEE-----------------eCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Confidence            22333 6788888                 99999876644433111111       111111   12335568999999


Q ss_pred             CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCC
Q psy16874        155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKD  199 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s  199 (227)
                      |.++..+|+..+.+.      +.     ..+.......+|++....      ||++|+++..
T Consensus       145 sk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk  206 (230)
T TIGR03707       145 SREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK  206 (230)
T ss_pred             CHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence            999999999754322      11     133344555566655432      9999999843

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.9e-11  Score=90.60  Aligned_cols=166  Identities=13%  Similarity=0.135  Sum_probs=98.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEE--eeCCC-CCCCchHHH--HHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQF--VNFPD-RTISTGHII--DEYLRKKIELPDQAAHLLFSANRWE   80 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~--~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   80 (227)
                      .+++|++.||+||||.|+...+...+.... +.+..  +..|. .+.+.-+.+  .+|...       ...-.|+.++..
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~-------a~~g~FAlsWqA   76 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTR-------AGQGAFALSWQA   76 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHH-------hhcCceeEEehh
Confidence            488999999999999999999999887542 33322  22231 111110100  111111       000112222211


Q ss_pred             h------hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874         81 R------EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKL  154 (227)
Q Consensus        81 ~------~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~  154 (227)
                      +      -..|..++..|..|++                 .          +.+     ..+-+....++ --+++.+.+
T Consensus        77 hGL~Ygip~eId~wl~~G~vvl~-----------------N----------gSR-----a~Lp~arrry~-~Llvv~ita  123 (192)
T COG3709          77 HGLSYGIPAEIDLWLAAGDVVLV-----------------N----------GSR-----AVLPQARRRYP-QLLVVCITA  123 (192)
T ss_pred             cCccccCchhHHHHHhCCCEEEE-----------------e----------ccH-----hhhHHHHHhhh-cceeEEEec
Confidence            1      1478889999999888                 2          111     22222222222 236999999


Q ss_pred             CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      +|+++.+|+..|+... ..+...++...-...... ++++||+++.++...+.....+.+
T Consensus       124 ~p~VLaqRL~~RGREs-~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~  182 (192)
T COG3709         124 SPEVLAQRLAERGRES-REEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQ  182 (192)
T ss_pred             CHHHHHHHHHHhccCC-HHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence            9999999998754332 245556665543333223 899999999999988887777763

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=99.29  E-value=5.9e-11  Score=104.03  Aligned_cols=167  Identities=12%  Similarity=0.087  Sum_probs=108.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+.+|+|+|.+||||+++++.|.+.++.+|+.|..+..|......-..+                           ...
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~~~fl---------------------------wRf   90 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERERPPM---------------------------WRF   90 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhcCcHH---------------------------HHH
Confidence            56889999999999999999999999999999998888775211111111                           223


Q ss_pred             HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChh-------hhhccc---CCCCCCCEEEEeec
Q psy16874         86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDIS-------WCFQPE---KGLPKPDAVLLFKL  154 (227)
Q Consensus        86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~pd~vi~L~~  154 (227)
                      ...++ .|.++|.                 ||+||............+..       -+..++   ......-+.+||++
T Consensus        91 w~~lP~~G~I~IF-----------------dRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI  153 (493)
T TIGR03708        91 WRRLPPKGKIGIF-----------------FGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL  153 (493)
T ss_pred             HHhCCCCCeEEEE-----------------cCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Confidence            33333 6788888                 99999876655443111111       111111   12334557999999


Q ss_pred             CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVIDT  214 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~~~  214 (227)
                      |.++..+|+..|.+.      +.     ..+.......+|++....      ||++|+++...   -.|+..|.+.|...
T Consensus       154 sk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~  233 (493)
T TIGR03708       154 SKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRAR  233 (493)
T ss_pred             CHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999765322      11     133344445556555432      99999998432   34677777777776


Q ss_pred             hh
Q psy16874        215 IK  216 (227)
Q Consensus       215 l~  216 (227)
                      +.
T Consensus       234 l~  235 (493)
T TIGR03708       234 LA  235 (493)
T ss_pred             Hh
Confidence            64

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.29  E-value=3.8e-11  Score=94.09  Aligned_cols=71  Identities=21%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHH---HHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA---ENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~  218 (227)
                      .|.+|++.||+++..+|+.+|+ .....+...++.   ...+.+.. .-.++|++.+++...+++.+.+...+...
T Consensus       124 ~d~Vi~V~a~~e~r~eRl~~R~-~~~~e~~~~~~~~Q~~~~ek~~~-ad~vi~n~~~i~~l~~~i~~~~~~~~~~~  197 (201)
T COG0237         124 FDKVIVVYAPPEIRLERLMKRD-GLDEEDAEARLASQRDLEEKLAL-ADVVIDNDGSIENLLEQIEKLLKELLGLV  197 (201)
T ss_pred             CCEEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHhcCCHHHHHhh-cCChhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence            7899999999999999998876 332222222222   23333222 34799999999999999999998777643

>smart00072 GuKc Guanylate kinase homologues

Probab=99.27  E-value=9.7e-11  Score=91.06  Aligned_cols=167  Identities=19%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSAN   77 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   77 (227)
                      +++|+|.||+||||+|+++.|.+..+.. +..+-+ ++.+..+...|        +.+.....++..+.....    ..+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~----~g~   77 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEY----SGN   77 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEE----cCc
Confidence            5789999999999999999999986422 222222 44333222111        333444443321111000    001


Q ss_pred             hhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee-cC
Q psy16874         78 RWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK-LN  155 (227)
Q Consensus        78 ~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~-~~  155 (227)
                      .+.. ...+...+..+..+++                 |     ..+          ..+.++....+.| ++||+. .+
T Consensus        78 ~YGt~~~~i~~~~~~~~~~il-----------------d-----~~~----------~~~~~l~~~~~~~-~vIfi~~~s  124 (184)
T smart00072       78 YYGTSKETIRQVAEQGKHCLL-----------------D-----IDP----------QGVKQLRKAQLYP-IVIFIAPPS  124 (184)
T ss_pred             CcccCHHHHHHHHHcCCeEEE-----------------E-----ECH----------HHHHHHHHhCCCc-EEEEEeCcC
Confidence            1111 1346666677877777                 6     211          2222222223344 688887 66


Q ss_pred             HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-C-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-N-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+++.+|+..|++... ....+++..+-..... . --.+|+++ +.++++.++.+.|.+
T Consensus       125 ~~~l~~rl~~R~~~~~-~~i~~rl~~a~~~~~~~~~fd~~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      125 SEELERRLRGRGTETA-ERIQKRLAAAQKEAQEYHLFDYVIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHHh
Confidence            7789999987654422 2233333332221111 1 22455554 788998888888864

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=99.26  E-value=1.2e-10  Score=94.47  Aligned_cols=163  Identities=14%  Similarity=0.163  Sum_probs=102.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..|.+|+|.|.+||||+.+++.|.+.++.+|+.|..+..|......-..+                           ...
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~~~p~l---------------------------WRf  106 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEELDHDFL---------------------------WRI  106 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHcCchH---------------------------HHH
Confidence            34889999999999999999999999999999999888775211111111                           122


Q ss_pred             HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhh-------hhccc---CCCCCCCEEEEeec
Q psy16874         86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISW-------CFQPE---KGLPKPDAVLLFKL  154 (227)
Q Consensus        86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~pd~vi~L~~  154 (227)
                      ...+ ..|.+.|.                 ||+||............+...       +..++   ......-+.|||++
T Consensus       107 w~~lP~~G~i~IF-----------------~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI  169 (264)
T TIGR03709       107 HKALPERGEIGIF-----------------NRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI  169 (264)
T ss_pred             HHhCCCCCeEEEE-----------------cCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC
Confidence            2233 36788888                 999998766554431121111       11111   12334557999999


Q ss_pred             CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVI  212 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~  212 (227)
                      |.++..+|+..+.+.      +.     ..+.......+|++....      +|++|+++...   -.|+..|.+.|.
T Consensus       170 sk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~  247 (264)
T TIGR03709       170 SKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALE  247 (264)
T ss_pred             CHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999754211      11     123344555566555432      99999998432   234445555554

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.25  E-value=1.3e-10  Score=89.62  Aligned_cols=38  Identities=32%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.+|+|+|++||||||+++.|+..+...+.++..+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id   39 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD   39 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence            46889999999999999999999999987776665554

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.25  E-value=7.7e-11  Score=93.40  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++.+|+|.|++||||||+++.|.+.++
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999999999984

>TIGR00152 dephospho-CoA kinase

Probab=99.25  E-value=4.2e-11  Score=93.38  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH---HHHhhCCeEEEcCCCCHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY---EKLKDNIWIDIDADKDIDTLGLIVK  208 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Id~~~s~~~v~~~I~  208 (227)
                      ..|.++++++|++++.+|+..|+ .....+...++....   +... ...++|++++++++...++.
T Consensus       123 ~~D~vv~V~~~~~~~~~Rl~~R~-~~s~~~~~~r~~~q~~~~~~~~-~ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       123 LCDRVIVVDVSPQLQLERLMQRD-NLTEEEVQKRLASQMDIEERLA-RADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHH-hCCEEEECCCCHHHHHHHHh
Confidence            46899999999999999998764 333334444443321   1111 14578899999999887764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.25  E-value=5.5e-12  Score=93.72  Aligned_cols=115  Identities=21%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cC---CCCHHHHHHHHHhhhhhhhhHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KI---ELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +|+++|+|||||||+++.|++.++...++.             +.+..-+.. ..   ..........    .......+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~-------------D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   63 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQ-------------DEIRRRLAGEDPPSPSDYIEAEERA----YQILNAAI   63 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEH-------------HHHHHHHCCSSSGCCCCCHHHHHHH----HHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeH-------------HHHHHHHcccccccchhHHHHHHHH----HHHHHHHH
Confidence            689999999999999999999877322221             122222211 11   1111111100    01112355


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+..|..+|+                 |......    ..     ...+.++......+..+|+|++|++++.+|+..
T Consensus        64 ~~~l~~g~~~vv-----------------d~~~~~~----~~-----r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~  117 (143)
T PF13671_consen   64 RKALRNGNSVVV-----------------DNTNLSR----EE-----RARLRELARKHGYPVRVVYLDAPEETLRERLAQ  117 (143)
T ss_dssp             HHHHHTT-EEEE-----------------ESS--SH----HH-----HHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcee-----------------ccCcCCH----HH-----HHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHh
Confidence            666778888887                 6322211    00     022333444444567899999999999999976


Q ss_pred             CC
Q psy16874        166 GD  167 (227)
Q Consensus       166 r~  167 (227)
                      |.
T Consensus       118 R~  119 (143)
T PF13671_consen  118 RN  119 (143)
T ss_dssp             TH
T ss_pred             cC
Confidence            63

...

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.23  E-value=5.7e-12  Score=95.60  Aligned_cols=147  Identities=18%  Similarity=0.131  Sum_probs=80.4

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHHHHHHHcCCEE
Q psy16874         17 DRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTLTKLIEQGITL   95 (227)
Q Consensus        17 ~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v   95 (227)
                      |||||||+++.|++.|++..++.+..-+..    .|..+.+++.. |.......           ..+.+...+.....|
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~----~g~si~~i~~~~G~~~fr~~-----------E~~~l~~l~~~~~~V   65 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER----TGMSISEIFAEEGEEAFREL-----------ESEALRELLKENNCV   65 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH----HTSHHHHHHHHHHHHHHHHH-----------HHHHHHHHHCSSSEE
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHH----hCCcHHHHHHcCChHHHHHH-----------HHHHHHHHhccCcEE
Confidence            799999999999999988665544321111    12222233322 11001111           113455555554556


Q ss_pred             EEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC--CcccH
Q psy16874         96 EIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE--RYEQT  173 (227)
Q Consensus        96 i~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~--~~~~~  173 (227)
                      |+          +++|+++..     -.         ...+.       ....+|||++|++++.+|+..+..  .+...
T Consensus        66 Ia----------~GGG~~~~~-----~~---------~~~L~-------~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~  114 (158)
T PF01202_consen   66 IA----------CGGGIVLKE-----EN---------RELLK-------ENGLVIYLDADPEELAERLRARDNRPLLKGK  114 (158)
T ss_dssp             EE----------E-TTGGGSH-----HH---------HHHHH-------HHSEEEEEE--HHHHHHHHHHHCTSGGTCSH
T ss_pred             Ee----------CCCCCcCcH-----HH---------HHHHH-------hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCC
Confidence            65          566666661     11         12221       234799999999999999964332  23321


Q ss_pred             ----HHHH---HHHHHHHHHhhCCeEEEcCCCCH-HHHHHHHHHHHH
Q psy16874        174 ----DFQR---KVAENYEKLKDNIWIDIDADKDI-DTLGLIVKDIVI  212 (227)
Q Consensus       174 ----~~~~---~~~~~~~~~~~~~~~~Id~~~s~-~~v~~~I~~~i~  212 (227)
                          ....   .-...|+..   ..++||++..+ ++++++|.+.|.
T Consensus       115 ~~~~~~~~~~~~R~~~Y~~~---a~~~v~~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  115 MEHEEILELLFEREPLYEQA---ADIVVDTDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---SSEEEETSSCHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHhc---CeEEEeCCCCCHHHHHHHHHHHhC
Confidence                1122   223355555   45889988777 999999988763

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=99.22  E-value=3e-12  Score=102.09  Aligned_cols=167  Identities=17%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      .|.+|+|+|.+||||+.+++.|.+.++.+|+.|..+..|..    .+.-+.+                       +....
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~----eE~~~p~-----------------------lwRfw   82 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTD----EELRRPF-----------------------LWRFW   82 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--H----HHHTS-T-----------------------THHHH
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCCh----hHcCCCc-----------------------HHHHH
Confidence            46899999999999999999999999999999988887641    1110000                       01222


Q ss_pred             HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhh-------hccc---CCCCCCCEEEEeecC
Q psy16874         87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWC-------FQPE---KGLPKPDAVLLFKLN  155 (227)
Q Consensus        87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~pd~vi~L~~~  155 (227)
                      ..+ ..|.++|.                 ||+||+...........+...+       ..++   ......-+.|||++|
T Consensus        83 ~~lP~~G~I~if-----------------~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIs  145 (228)
T PF03976_consen   83 RALPARGQIGIF-----------------DRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHIS  145 (228)
T ss_dssp             TTS--TT-EEEE-----------------ES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--
T ss_pred             HhCCCCCEEEEE-----------------ecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence            222 36888888                 9999987665544312221111       1111   122244579999999


Q ss_pred             HHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhh----C--CeEEEcCCCCH---HHHHHHHHHHHHHHh
Q psy16874        156 EEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKD----N--IWIDIDADKDI---DTLGLIVKDIVIDTI  215 (227)
Q Consensus       156 ~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~----~--~~~~Id~~~s~---~~v~~~I~~~i~~~l  215 (227)
                      .++..+|+.++.+.      +.     ..+.......+|+....    .  ||++|+++...   -.|+..|.+.|+..+
T Consensus       146 k~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~~~  225 (228)
T PF03976_consen  146 KKEQKKRLKEREEDPLKRWKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADDKRYARLAVARTLLDALEKAL  225 (228)
T ss_dssp             HHHHHHHHHHHHHSCCCGGG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCccccccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHhhc
Confidence            99999999653211      11     12223344445555543    2  99999998332   235566666666554


Q ss_pred             hh
Q psy16874        216 KK  217 (227)
Q Consensus       216 ~~  217 (227)
                      ++
T Consensus       226 ~~  227 (228)
T PF03976_consen  226 KK  227 (228)
T ss_dssp             HH
T ss_pred             cC
Confidence            43

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.22  E-value=1.8e-10  Score=97.04  Aligned_cols=76  Identities=14%  Similarity=0.055  Sum_probs=47.9

Q ss_pred             ccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--C----CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        139 PEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--N----IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       139 ~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~----~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +.+....+..+||+++|++++.+|...|+..+. .+.++.+...|+....  +    +.++|+.....++....+.+++.
T Consensus       148 LAr~~~~~~~~V~ld~ple~~l~RN~~R~~~v~-devie~m~~r~E~P~~~~nrWd~pl~~v~~~~~~~~~~~~~~~~~~  226 (340)
T TIGR03575       148 LARKYSLGFCQLFLDCPVESCLLRNKQRPVPLP-DETIQLMGRKIEKPNPEKNAWEHNSLVIQSSACISEDSLEVTDLLN  226 (340)
T ss_pred             HHHHhCCCEEEEEEeCCHHHHHHHHhcCCCCCC-HHHHHHHHHHhcCCCCCCCCCCCCeEEEecCccccccchhHHHHHH
Confidence            333333556899999999999999988754433 5566666667766553  2    78888875333222234444444


Q ss_pred             HHh
Q psy16874        213 DTI  215 (227)
Q Consensus       213 ~~l  215 (227)
                      ..+
T Consensus       227 ~~~  229 (340)
T TIGR03575       227 TAL  229 (340)
T ss_pred             HHH
Confidence            444

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.21  E-value=8.2e-11  Score=108.93  Aligned_cols=85  Identities=21%  Similarity=0.214  Sum_probs=54.5

Q ss_pred             CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH-HH---HHHh---h-CCeEEEcCC-CCH
Q psy16874        130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE-NY---EKLK---D-NIWIDIDAD-KDI  200 (227)
Q Consensus       130 ~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~-~~---~~~~---~-~~~~~Id~~-~s~  200 (227)
                      |.+..|+     -.|..++.|||++++++..+|...+.....-.+.++.+.. -+   +...   . ...++||++ .++
T Consensus       144 GRdigtv-----v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~  218 (712)
T PRK09518        144 GRDITTV-----VAPDAEVRILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDF  218 (712)
T ss_pred             cCccceE-----EecCCCeEEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCH
Confidence            6666666     3466789999999999998887543221111222222211 11   1111   1 167899977 999


Q ss_pred             HHHHHHHHHHHHHHhhhcC
Q psy16874        201 DTLGLIVKDIVIDTIKKSQ  219 (227)
Q Consensus       201 ~~v~~~I~~~i~~~l~~~~  219 (227)
                      ++|.+.|.+.+...+....
T Consensus       219 ~~v~~~i~~~i~~~~~~~~  237 (712)
T PRK09518        219 DETLDLLIGLVEDAIEEQE  237 (712)
T ss_pred             HHHHHHHHHHHHhhhhhhh
Confidence            9999999999987776543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.21  E-value=2.3e-10  Score=89.99  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++|.+|+|+|++||||||+++.|+..+...+..+..+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld   59 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD   59 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence            367889999999999999999999999977776665554

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.20  E-value=2.8e-10  Score=104.15  Aligned_cols=165  Identities=13%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+++|+|||||||+++.|++.|...+..+..++.        +.++..+..+....+......+..    .....
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~--------D~~r~~l~~~~~~~~~~r~~~~~~----l~~~a  525 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG--------DNVRHGLNRDLGFSDADRVENIRR----VAEVA  525 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC--------hhhhhccCCCCCCCHHHHHHHHHH----HHHHH
Confidence            458999999999999999999999999876766655541        222222222212222211111111    01223


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......|..|++                 |-    .+++...+     .+..++...  .+-.+|||++|++++.+|.. 
T Consensus       526 ~~~~~~G~~Viv-----------------da----~~~~~~~R-----~~~r~l~~~--~~~~~v~L~~~~e~~~~R~~-  576 (632)
T PRK05506        526 RLMADAGLIVLV-----------------SF----ISPFREER-----ELARALHGE--GEFVEVFVDTPLEVCEARDP-  576 (632)
T ss_pred             HHHHhCCCEEEE-----------------EC----CCCCHHHH-----HHHHHhccc--CCeEEEEECCCHHHHHhhCC-
Confidence            334467888888                 51    11111111     222222221  24479999999999999953 


Q ss_pred             CCCCccc--HHH---HHHHHHHHHHHhhCCeEEEcC-CCCHHHHHHHHHHHHHH
Q psy16874        166 GDERYEQ--TDF---QRKVAENYEKLKDNIWIDIDA-DKDIDTLGLIVKDIVID  213 (227)
Q Consensus       166 r~~~~~~--~~~---~~~~~~~~~~~~~~~~~~Id~-~~s~~~v~~~I~~~i~~  213 (227)
                       .+.+..  .+.   +..+...|+.+ ....++||+ ..+++++.++|.+.|..
T Consensus       577 -r~L~~~~~~~~l~~l~~~r~~y~~P-~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        577 -KGLYAKARAGEIKNFTGIDSPYEAP-ENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             -cchhhhccccccccccccccCCCCC-CCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence             223321  111   11222234321 114578887 57999999999988854

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.19  E-value=3.6e-09  Score=84.78  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .+++|+|.|++||||||+++.|++.++..+++.+.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~   37 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA   37 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence            46899999999999999999999999988877665

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.19  E-value=4.1e-10  Score=101.34  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=90.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++|.+|+|+|++||||||+++.|++.++. .+.++..++.        +.+++-+..+..+...-....+.  +  ....
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~--------D~vr~~l~ge~~f~~~er~~~~~--~--l~~~  457 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG--------DVVRKHLSSELGFSKEDRDLNIL--R--IGFV  457 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC--------cHHHHhccCCCCCCHHHHHHHHH--H--HHHH
Confidence            35779999999999999999999999987 5665555541        12222222111122211111010  0  0012


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ....+..|..||+                 |    ..+++...+ .   .+.. +.... ..-++|||++|++++.+|..
T Consensus       458 a~~v~~~Gg~vI~-----------------~----~~~p~~~~R-~---~nr~-llk~~-g~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        458 ASEITKNGGIAIC-----------------A----PIAPYRATR-R---EVRE-MIEAY-GGFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHHHHhCCCEEEE-----------------E----eCCchHHHH-H---HHHH-HHhhc-CCEEEEEEcCCHHHHHHhcc
Confidence            2334567888888                 5    122332222 0   1111 11111 12258999999999999985


Q ss_pred             CCCCCccc--HHHHHHH---HHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        165 FGDERYEQ--TDFQRKV---AENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       165 ~r~~~~~~--~~~~~~~---~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      +  +.+.+  .+.++.+   +..|..+. ...++||++ .+++++.++|.+.|..
T Consensus       511 r--~Ll~~~~~~~i~~l~~~R~~yy~p~-~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        511 K--GLYAKAREGKIKGFTGISDPYEPPA-NPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             c--cccccchhchhhccccccccccCCC-CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            3  23321  1122222   22222211 134788877 6899999998888764

>KOG4235|consensus

Probab=99.18  E-value=3.2e-11  Score=91.96  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             CCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh--------C-CeEEEcCCCCH
Q psy16874        142 GLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD--------N-IWIDIDADKDI  200 (227)
Q Consensus       142 ~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~--------~-~~~~Id~~~s~  200 (227)
                      ....+|.+|||+++|++|.+|+..|.+.-+   ..+|++.++...+.|.-        + +++++|++-..
T Consensus       150 ~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDad~n~  220 (244)
T KOG4235|consen  150 MDVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDADHNM  220 (244)
T ss_pred             cccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEecccch
Confidence            335799999999999999999976643333   48899999887777641        1 89999977443

>KOG3220|consensus

Probab=99.17  E-value=4.6e-10  Score=86.15  Aligned_cols=167  Identities=17%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-ee---CCCCCCCchHHHHHHHhh-----cCCCCHHHHHHHHHhh--
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VN---FPDRTISTGHIIDEYLRK-----KIELPDQAAHLLFSAN--   77 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--   77 (227)
                      .++.++|..||||||+++.+. .++...++++. .+   +|  +.+....+.+.+..     ++.+.....-.+++.+  
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~P--G~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~   78 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEP--GTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK   78 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcC--CChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence            478999999999999997776 34333333332 12   24  44444555555443     2233333222222211  


Q ss_pred             -------------hhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC
Q psy16874         78 -------------RWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP  144 (227)
Q Consensus        78 -------------~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (227)
                                   +.+..+.+...+-+|..+++                +|      .           ..+.+. ....
T Consensus        79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~iv----------------lD------i-----------PLLFE~-~~~~  124 (225)
T KOG3220|consen   79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIV----------------LD------I-----------PLLFEA-KLLK  124 (225)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEE----------------Ee------c-----------hHHHHH-hHHh
Confidence                         12222344445556654443                24      1           112111 0111


Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH--hhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL--KDNIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ....+|.+.||.++..+|+..|. .....+..+++...+.-.  .+...++||+++++++..++|..++..
T Consensus       125 ~~~~tvvV~cd~~~Ql~Rl~~Rd-~lse~dAe~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~  194 (225)
T KOG3220|consen  125 ICHKTVVVTCDEELQLERLVERD-ELSEEDAENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLAL  194 (225)
T ss_pred             heeeEEEEEECcHHHHHHHHHhc-cccHHHHHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHH
Confidence            33468889999999999998765 444444555555433111  111568999999999999999887753

>TIGR00017 cmk cytidylate kinase

Probab=99.14  E-value=3.2e-10  Score=90.31  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +++|.|.|++||||||+++.|+++++..+++.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~   35 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA   35 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence            3689999999999999999999999877666553

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.13  E-value=5.6e-10  Score=104.11  Aligned_cols=73  Identities=10%  Similarity=0.060  Sum_probs=46.1

Q ss_pred             CCCCCCEEEEeecCHHHHHHhcCCC-CCCcccHHHHHHHH-HHHHHHhh--------CCeEEEcCC-CCHHHHHHHHHHH
Q psy16874        142 GLPKPDAVLLFKLNEEALQRRKGFG-DERYEQTDFQRKVA-ENYEKLKD--------NIWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       142 ~~~~pd~vi~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                      -+|..++.|||++++++..+|.... .....-.+.+..+. +-+.+..+        ...++||++ .+++++.+.|.+.
T Consensus       203 VfPdA~~KifL~As~e~RA~RR~~e~~~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~~  282 (863)
T PRK12269        203 VFVDADLKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIARE  282 (863)
T ss_pred             ECCCCCEEEEEECCHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHHH
Confidence            3567789999999999998876421 11111123333331 12222221        167899977 9999999999988


Q ss_pred             HHHH
Q psy16874        211 VIDT  214 (227)
Q Consensus       211 i~~~  214 (227)
                      +.+.
T Consensus       283 ~~~~  286 (863)
T PRK12269        283 AHRR  286 (863)
T ss_pred             HHhc
Confidence            8643

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.13  E-value=1.3e-09  Score=100.09  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC----CCC--CcccHHHHHHHHH-HHHHHhh--------CCeEEE
Q psy16874        130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF----GDE--RYEQTDFQRKVAE-NYEKLKD--------NIWIDI  194 (227)
Q Consensus       130 ~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~----r~~--~~~~~~~~~~~~~-~~~~~~~--------~~~~~I  194 (227)
                      |.+..++     -+|..++.|||++++++..+|...    .+.  .++  +.++.+.+ .+.+..+        ...++|
T Consensus       563 GRdigtv-----v~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~--~~~~~~~~Rd~~d~~R~~~pl~~~~da~~i  635 (661)
T PRK11860        563 GRDMGTV-----IFPDAALKVFLTASAEARAERRYKQLISKGISANIA--DLLADLEARDARDTQRSVAPLKPAQDALLL  635 (661)
T ss_pred             CCCCccE-----ECCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhHHhhcCCCCCCccCCCEEEE
Confidence            6666666     346678999999999999888743    111  222  22222211 1222211        167899


Q ss_pred             cCC-CCHHHHHHHHHHHHHH
Q psy16874        195 DAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       195 d~~-~s~~~v~~~I~~~i~~  213 (227)
                      |++ .+++++.+.|.+.+.+
T Consensus       636 dts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        636 DNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             ECCCCCHHHHHHHHHHHHHh
Confidence            987 7999999999888864

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.12  E-value=1.1e-09  Score=94.69  Aligned_cols=72  Identities=17%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH--HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE--NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      ..|.+||+++|++++.+|+..+++ ....+...++..  .++.......++|+++++++++..++.+.+...+..
T Consensus       123 ~~D~iI~V~ap~e~ri~Rl~~rRg-~s~~~a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~  196 (395)
T PRK03333        123 LFHLVVVVDADVEVRVRRLVEQRG-MAEADARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWADRLLP  196 (395)
T ss_pred             hCCEEEEEECCHHHHHHHHHhcCC-CCHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            458999999999999999976432 222222233322  122222224588999999999999988888766654

>PRK08118 topology modulation protein; Reviewed

Probab=99.11  E-value=3.7e-10  Score=86.43  Aligned_cols=32  Identities=31%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      -|+|+|++||||||+++.|++.++..+++.+.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~   34 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA   34 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence            49999999999999999999999877666554

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.11  E-value=2.4e-10  Score=88.43  Aligned_cols=56  Identities=14%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH--hhCCeEEEcCCCCHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL--KDNIWIDIDADKDID  201 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~s~~  201 (227)
                      ..|.++++++|+++..+|+..|. .....+...++.......  ....-++|+++++.+
T Consensus       121 ~~D~vv~V~a~~~~ri~Rl~~Rd-~~s~~~~~~r~~~Q~~~~~~~~~aD~vI~N~~~~~  178 (179)
T cd02022         121 LVDRVIVVDAPPEIQIERLMKRD-GLSEEEAEARIASQMPLEEKRARADFVIDNSGSLE  178 (179)
T ss_pred             hCCeEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCCC
Confidence            56899999999999999997653 333344444444322111  111347788776653

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK12338 hypothetical protein; Provisional

Probab=99.11  E-value=1.9e-09  Score=89.74  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEeeCCCCC---CCchHHH-------HHHHhhcCCCCH--HHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVNFPDRT---ISTGHII-------DEYLRKKIELPD--QAAHL   72 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~--~~~~~   72 (227)
                      .+|.+|+|.|+|||||||+|..|++.++..++ +.+.+++..++   .++...+       ...+..+....+  .....
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA   81 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence            56899999999999999999999999987654 33334431111   1110000       011111111111  11111


Q ss_pred             HH---Hhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCE
Q psy16874         73 LF---SANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDA  148 (227)
Q Consensus        73 ~~---~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~  148 (227)
                      .|   .......+ ..+..++..|..+|+                 +..++.            ..++.........+-.
T Consensus        82 gf~~q~~~V~~~i~~vi~r~~~~g~svIi-----------------EGvhl~------------P~~i~~~~~~~~~~v~  132 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERAVTDSDDIVI-----------------EGVHLV------------PGLIDIEQFEENASIH  132 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-----------------Eecccc------------HHHHhhhhhcccCceE
Confidence            11   11111122 244445566767777                 522211            1222211111111224


Q ss_pred             EEEeecCHHHHHHhcCCCC------CCc-ccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        149 VLLFKLNEEALQRRKGFGD------ERY-EQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       149 vi~L~~~~e~~~~R~~~r~------~~~-~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      .++|..+.++..+|...|.      ..+ ..-+..+.+++.+...+.. .+.+|+ +.+.+++.+.+.+.|.+..+
T Consensus       133 ~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~-N~did~Tv~~ile~I~e~s~  207 (319)
T PRK12338        133 FFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVEQAREHNVPVIK-NDDIDCTVKKMLSYIREVCV  207 (319)
T ss_pred             EEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHHhHhhCCCceeC-CCcHHHHHHHHHHHHHhheE
Confidence            5666688888888886532      222 1233333444444444333 555564 45889999999998876654

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.10  E-value=2.5e-09  Score=80.29  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|+|+|++||||||+++.|++.+...+.++..+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~   34 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD   34 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            4789999999999999999999987777665543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.09  E-value=2.1e-09  Score=80.00  Aligned_cols=31  Identities=32%  Similarity=0.368  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      +|+|.|++||||||+++.|++.++..+++.+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            4899999999999999999999876555544

>PHA03136 thymidine kinase; Provisional

Probab=99.09  E-value=3.3e-09  Score=89.51  Aligned_cols=174  Identities=15%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCc--hHHHHHHHhh-----cCCCCHH-----HH--HH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--IST--GHIIDEYLRK-----KIELPDQ-----AA--HL   72 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~-----~~~~~~~-----~~--~~   72 (227)
                      ..|+|+|+.|+||||+++.|.+. ...+-++.++.||-..  .-.  .+.+..++..     .++++..     ..  .+
T Consensus        37 ~rvyieG~~gvGKTT~~~~l~~~-~~~~~~vl~v~EPm~yW~~v~~~~d~i~~Iy~~q~r~~~G~~s~~~a~~~~~~~~Q  115 (378)
T PHA03136         37 VLLYLDGPFGTGKTTTAKLLMEM-PDTLAARLYLAEPMAAWRNHFGGADMIKEINEIQELKARGDIACRDAKAIAAAELQ  115 (378)
T ss_pred             EEEEEECCCcCCHHHHHHHHHhc-cccCCCeeeecCchHHHHhhcCcchHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence            47999999999999999999884 2233345566776311  111  1344444432     2233321     11  12


Q ss_pred             HHHhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhh---hhccC-CCChhhhhc---ccCCCC
Q psy16874         73 LFSANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF---SAAKE-GMDISWCFQ---PEKGLP  144 (227)
Q Consensus        73 ~~~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~---~~~~~-~~~~~~~~~---~~~~~~  144 (227)
                      .-++..+... ..+.+.+.....+..     ........-+++||..++...-   ..... .+...-+..   +....+
T Consensus       116 ~~fa~P~~~~~~~~~~~~g~~~~~~~-----~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~~~~~p  190 (378)
T PHA03136        116 LQFAAPLRIFHHVASNLFGSERCYSA-----AARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISGIPDEP  190 (378)
T ss_pred             HHhccHHHHHHHHHHHhhccccccCC-----CCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhhCcCCC
Confidence            2222333322 233334332211000     0001122335779997763332   11111 122222222   234567


Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLKD  188 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~  188 (227)
                      .||++|||+++++++.+|+.+|++..|.  .+|++.++..|+.+..
T Consensus       191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~~n  236 (378)
T PHA03136        191 HGGNIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICFMN  236 (378)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999887766653  7999999999888864

>PRK06696 uridine kinase; Validated

Probab=99.08  E-value=7.8e-10  Score=88.58  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|+|.|++||||||+++.|++.|+..|.++..+.
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~   57 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS   57 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            46789999999999999999999999987776665533

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.07  E-value=1.2e-09  Score=83.62  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeC--CCCCCCchHHHHHHHhhcCCC------C--HHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNF--PDRTISTGHIIDEYLRKKIEL------P--DQAAHLLFS   75 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~   75 (227)
                      +.+|++.|++.|||||+++.|.+.+...  +++++.+..  |.          .....+..+      +  ......++.
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~   70 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPP----------GRYRPGDGLEPAGDRPDGGPLFRRLYA   70 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-G----------GGGTSTTSEEEETTSEEE-HHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCc----------ccccCCccccccccCCchhHHHHHHHH
Confidence            4689999999999999999999987642  222222211  00          000111110      0  011111111


Q ss_pred             hhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874         76 ANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        76 ~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                          .....+......|..||+                 |-.+.......        ..+.++.  ...|-+.|-+.||
T Consensus        71 ----~~~~~iaa~a~aG~~VIv-----------------D~v~~~~~~l~--------d~l~~~L--~~~~vl~VgV~Cp  119 (174)
T PF07931_consen   71 ----AMHAAIAAMARAGNNVIV-----------------DDVFLGPRWLQ--------DCLRRLL--AGLPVLFVGVRCP  119 (174)
T ss_dssp             ----HHHHHHHHHHHTT-EEEE-----------------EE--TTTHHHH--------HHHHHHH--TTS-EEEEEEE--
T ss_pred             ----HHHHHHHHHHhCCCCEEE-----------------ecCccCcHHHH--------HHHHHHh--CCCceEEEEEECC
Confidence                112455666778999999                 73322211100        1111111  1356689999999


Q ss_pred             HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      ++++.+|-..|+++.....     ...++.....  .-+.||++ .+++++++.|.+.++
T Consensus       120 leil~~RE~~RgDR~~G~a-----~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  120 LEILERRERARGDRPIGLA-----AWQAEHVHEGGRYDLEVDTSATSPEECAREILARLE  174 (174)
T ss_dssp             HHHHHHHHHHHTSSSTTHH-----HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT--
T ss_pred             HHHHHHHHHhcCCcchHHH-----HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHhC
Confidence            9999999887777654311     1111212111  34788988 799999999987653

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.07  E-value=2.9e-10  Score=87.82  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH---HHHhhCCeEEEcCCCCHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY---EKLKDNIWIDIDADKDIDT  202 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Id~~~s~~~  202 (227)
                      ..|.++++.+|+++..+|+.+|. .+...+...++....   +.... ..++|+++++.++
T Consensus       122 ~~D~vi~V~a~~e~ri~Rl~~R~-~~~~~~~~~ri~~Q~~~~~k~~~-ad~vI~N~g~~~~  180 (180)
T PF01121_consen  122 LCDEVIVVYAPEEIRIKRLMERD-GLSEEEAEARIASQMPDEEKRKR-ADFVIDNNGSLEE  180 (180)
T ss_dssp             GSSEEEEEE--HHHHHHHHHHHH-TSTHHHHHHHHHTS--HHHHHHH--SEEEE-SSHHH-
T ss_pred             hhceEEEEECCHHHHHHHHHhhC-CCcHHHHHHHHHhCCCHHHHHHh-CCEEEECCCCCCC
Confidence            46899999999999999997653 333333434443322   11111 3489999988764

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.03  E-value=2.6e-09  Score=82.94  Aligned_cols=167  Identities=19%  Similarity=0.250  Sum_probs=86.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      ++++|+|+||+||||||+++.|.+.++.. +..+-+ ++.|..+..-|        +.+......+..+.-    ..+..
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~----~~~~g   76 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEY----GEYDG   76 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEE----EEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEE----eeecc
Confidence            36789999999999999999999987643 223333 44443221111        112222222110000    00000


Q ss_pred             hhhh-hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874         77 NRWE-REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        77 ~~~~-~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                      ..+. ....+...+..|..+++                 |               .+...+..+......| ++||+.++
T Consensus        77 ~~YGt~~~~i~~~~~~gk~~il-----------------~---------------~~~~g~~~L~~~~~~~-~~IfI~~~  123 (183)
T PF00625_consen   77 NYYGTSKSAIDKVLEEGKHCIL-----------------D---------------VDPEGVKQLKKAGFNP-IVIFIKPP  123 (183)
T ss_dssp             EEEEEEHHHHHHHHHTTTEEEE-----------------E---------------ETHHHHHHHHHCTTTE-EEEEEEES
T ss_pred             hhhhhccchhhHhhhcCCcEEE-----------------E---------------ccHHHHHHHHhcccCc-eEEEEEcc
Confidence            0111 12456666778877777                 4               1112233333333345 57777655


Q ss_pred             -HHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        156 -EEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       156 -~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                       ++.+.+|+..++..- .....+++..   .+........ +|.+ .++++++.+|.++|++
T Consensus       124 s~~~l~~~l~~r~~~~-~~~i~~r~~~~~~~~~~~~~fd~-vi~n-~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  124 SPEVLKRRLRRRGDES-EEEIEERLERAEKEFEHYNEFDY-VIVN-DDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             SHHHHHHHHHTTTHCH-HHHHHHHHHHHHHHHGGGGGSSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHhcccccc-HHHHHHHHHHHHHHHhHhhcCCE-EEEC-cCHHHHHHHHHHHHHh
Confidence             788888886644321 1223333333   2332211134 4443 3899999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=99.02  E-value=2.4e-09  Score=94.05  Aligned_cols=163  Identities=16%  Similarity=0.177  Sum_probs=101.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+.+|+|+|.++|||+..++.|.+.++.+|+.|..+..|..    .+....+                       +...
T Consensus       297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~----~E~~~~~-----------------------lwRf  349 (493)
T TIGR03708       297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTD----EEKAQHY-----------------------LWRF  349 (493)
T ss_pred             CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCH----HHHcCcH-----------------------HHHH
Confidence            468899999999999999999999999999999998887752    1111111                       1233


Q ss_pred             HHHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-hh------hhccc---CCCCCCCEEEEeec
Q psy16874         86 TKLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-SW------CFQPE---KGLPKPDAVLLFKL  154 (227)
Q Consensus        86 ~~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-~~------~~~~~---~~~~~pd~vi~L~~  154 (227)
                      .+.++ .|.+.|.                 ||+||............+. +|      +..++   ......-+.+||++
T Consensus       350 ~~~lP~~G~i~iF-----------------dRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhI  412 (493)
T TIGR03708       350 WRHIPRRGRITIF-----------------DRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHI  412 (493)
T ss_pred             HHhCCCCCeEEEE-----------------cCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEc
Confidence            33333 6778888                 9999976554433211111 11      11111   12335568999999


Q ss_pred             CHHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIVI  212 (227)
Q Consensus       155 ~~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i~  212 (227)
                      |.++..+|+..|.+.      +.     +.+.......+|++....      ||++|+++...   -.|...|.+.|.
T Consensus       413 sk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~  490 (493)
T TIGR03708       413 DKEEQLRRFEERENTPFKRYKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIE  490 (493)
T ss_pred             CHHHHHHHHHHHhcCCccCCcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHH
Confidence            999999999765322      11     123333444455555432      99999988432   234444444444

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK07667 uridine kinase; Provisional

Probab=99.01  E-value=8.9e-09  Score=80.64  Aligned_cols=39  Identities=26%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ...+|.|.|++||||||+++.|++.++..++++..+...
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D   54 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID   54 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            457899999999999999999999999888887776643

>TIGR00235 udk uridine kinase

Probab=98.98  E-value=8.2e-09  Score=81.70  Aligned_cols=32  Identities=44%  Similarity=0.629  Sum_probs=28.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      |..  +++.+|+|.|++||||||+++.|...++.
T Consensus         1 ~~~--~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         1 MDK--PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCC--CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            555  78899999999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG0635|consensus

Probab=98.97  E-value=2.7e-09  Score=78.43  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|+.|+++|.+||||||++-.|.+.|-.+|..+..++
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LD   66 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILD   66 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEec
Confidence            57899999999999999999999999998887665554

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.96  E-value=3.6e-09  Score=83.13  Aligned_cols=30  Identities=37%  Similarity=0.388  Sum_probs=27.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .++.+|.|.|++||||||+++.|...++..
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            456899999999999999999999999855

>COG0645 Predicted kinase [General function prediction only]

Probab=98.95  E-value=3.1e-09  Score=79.84  Aligned_cols=146  Identities=15%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      ++++++.|.+||||||++..|++.++...+.++.+++.-.+.+....-    . ............|.    ..+.....
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~----~-~g~ys~~~~~~vy~----~l~~~A~l   71 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRG----P-AGLYSPAATAAVYD----ELLGRAEL   71 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccC----C-CCCCcHHHHHHHHH----HHHHHHHH
Confidence            368999999999999999999999998888777665532221110000    0 11112222222111    12244555


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+..|..||.                 |.-+..    ...+     +....+......+...|.+.+|++++..|+..|.
T Consensus        72 ~l~~G~~VVl-----------------Da~~~r----~~~R-----~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~  125 (170)
T COG0645          72 LLSSGHSVVL-----------------DATFDR----PQER-----ALARALARDVGVAFVLIRLEAPEEVLRGRLAARK  125 (170)
T ss_pred             HHhCCCcEEE-----------------ecccCC----HHHH-----HHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence            6788999988                 832222    2111     2222233444456678999999999999998776


Q ss_pred             CCccc--HHHHHHHHHHHHHHhh
Q psy16874        168 ERYEQ--TDFQRKVAENYEKLKD  188 (227)
Q Consensus       168 ~~~~~--~~~~~~~~~~~~~~~~  188 (227)
                      ....+  -..+..+....+.+..
T Consensus       126 ~d~sDA~~~il~~q~~~~~~~~~  148 (170)
T COG0645         126 GDASDATFDILRVQLAEDEPWTE  148 (170)
T ss_pred             CCcccchHHHHHHHHhhhCCccc
Confidence            54432  4444555544444443

>PLN02772 guanylate kinase

Probab=98.95  E-value=1.8e-08  Score=85.95  Aligned_cols=168  Identities=12%  Similarity=0.118  Sum_probs=89.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      ..++|+|+||+||||||+++.|.+.+.. .++.+-+ +|.|..+..-|        +.+......+.- ..   ...+.-
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~F-lE---~~e~~G  209 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKF-LE---FASVHG  209 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCcc-ce---eeeecC
Confidence            4568999999999999999999987653 2444433 55554322211        112222222211 11   100111


Q ss_pred             hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874         77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                      ..+.. .+.+...+.+|.++++                 |               ++.+-..++....+.+-.++++..+
T Consensus       210 n~YGTsk~~V~~vl~~Gk~vIL-----------------d---------------LD~qGar~Lr~~~l~~v~IFI~PPS  257 (398)
T PLN02772        210 NLYGTSIEAVEVVTDSGKRCIL-----------------D---------------IDVQGARSVRASSLEAIFIFICPPS  257 (398)
T ss_pred             ccccccHHHHHHHHHhCCcEEE-----------------e---------------CCHHHHHHHHHhcCCeEEEEEeCCC
Confidence            12222 2456666778887777                 4               1112122222222234345555556


Q ss_pred             HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh-----CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKD-----NIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .+++.+|+..|+..- ..+..+++..+..++..     .--++|.++ ++++.++++.++|.
T Consensus       258 lEeLe~RL~~RGtes-eE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~  317 (398)
T PLN02772        258 MEELEKRLRARGTET-EEQIQKRLRNAEAELEQGKSSGIFDHILYND-NLEECYKNLKKLLG  317 (398)
T ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhccccCCCCEEEECC-CHHHHHHHHHHHHh
Confidence            899999998654332 23444555554333321     112344444 89999999998875

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.94  E-value=8.1e-09  Score=78.57  Aligned_cols=154  Identities=19%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC----C-CCHHHHHHHHHhhh-hhhhhH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI----E-LPDQAAHLLFSANR-WEREPT   84 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~   84 (227)
                      |+|+|++|+||||+++.|+++    |+++.  .++.         +.++....    . .+.......+.... ....+.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~a---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   66 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYA---------REIIEEGGRRDRDTLPWEDDLLAFQEGILEQQLEA   66 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH----T-EEE----TT---------HHHHHHSSSS-TTSS-TT-THHHHHHH--HHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc----CCeEE--eecH---------HHHHHHhccccchhhhhcchHHHHHHHHHHHHHHH
Confidence            899999999999999999988    44433  3331         22332211    1 11100000011000 011112


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      .. ......++|+                 ||..++..+|.....+-....+..... ....|++|+|..++..  ..-.
T Consensus        67 ~~-~~~~~~~vi~-----------------Dr~~~d~~aY~~~~~~~~~~~l~~~~~-~~~yd~v~~l~~~~~~--~~D~  125 (163)
T PF13521_consen   67 EA-SAKSSDVVIC-----------------DRGPLDTLAYSEFYFGDYPEELEREAR-LSRYDLVFLLPPDPPW--EQDG  125 (163)
T ss_dssp             HH-HHH-SSEEEE-----------------SS-HHHHHHHHHHHHS---HHHHHHHH-HS--SEEEEEE-----------
T ss_pred             HH-hhcCCCcEEE-----------------eCChHHHHHHHHHhcCcchHHHHHHHH-hCCCCEEEEeCCcccc--CCCC
Confidence            11 1246788999                 999999888876652221233322211 2356899998876633  2111


Q ss_pred             CCCCCcc-cHHHHHHHHHHHHHHhhCCeEEEcCCCCHHH
Q psy16874        165 FGDERYE-QTDFQRKVAENYEKLKDNIWIDIDADKDIDT  202 (227)
Q Consensus       165 ~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~  202 (227)
                      .|....+ .....+.+.+.|+...- ++++|+ ++|.++
T Consensus       126 ~R~~~~~~r~~~~~~~~~~l~~~~~-~~~~v~-~gs~~e  162 (163)
T PF13521_consen  126 VRPEDPEERERIDELLKELLERHGI-PYIIVP-SGSIEE  162 (163)
T ss_dssp             -------SHHHHHHHHHHHHHGGG----EEEE--SSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCC-eEEEeC-CCChhh
Confidence            1212222 23444445555554332 667775 556554

>PRK06547 hypothetical protein; Provisional

Probab=98.94  E-value=6.7e-09  Score=79.76  Aligned_cols=38  Identities=21%  Similarity=0.107  Sum_probs=32.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+++|.|.|++||||||+++.|++.++...++.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~   50 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLY   50 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccccee
Confidence            56789999999999999999999999877666666544

>PTZ00301 uridine kinase; Provisional

Probab=98.92  E-value=7.3e-09  Score=82.01  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++|.|.|++||||||+|+.|.+.+..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~   29 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMA   29 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            578999999999999999999988853

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=98.90  E-value=6.4e-10  Score=83.20  Aligned_cols=97  Identities=20%  Similarity=0.298  Sum_probs=64.8

Q ss_pred             Ccccch-hhhhhhcc--CC-CC---h----hhhhcccCCCCC-CCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHH
Q psy16874        115 DRYSFS-GVAFSAAK--EG-MD---I----SWCFQPEKGLPK-PDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKV  179 (227)
Q Consensus       115 Dr~~~~-~~~~~~~~--~~-~~---~----~~~~~~~~~~~~-pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~  179 (227)
                      ||++++ .+.+....  .| ++   .    .+...+....+. ||++|||++||+++.+|+.+|++..|   +.+|++.+
T Consensus        25 eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L  104 (146)
T PF01712_consen   25 ERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERL  104 (146)
T ss_dssp             ES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHH
T ss_pred             cCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHH
Confidence            999988 55544331  12 11   1    222223345667 99999999999999999999888777   48999999


Q ss_pred             H-HHHHHHhhC----CeEEEcCCC-CHHHHHHHHHHHH
Q psy16874        180 A-ENYEKLKDN----IWIDIDADK-DIDTLGLIVKDIV  211 (227)
Q Consensus       180 ~-~~~~~~~~~----~~~~Id~~~-s~~~v~~~I~~~i  211 (227)
                      + +.|+.+...    ++++||++. +..+..+++...+
T Consensus       105 ~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~  142 (146)
T PF01712_consen  105 HEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVI  142 (146)
T ss_dssp             HHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHH
T ss_pred             hHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHH
Confidence            9 899998754    889999885 5555555555444

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PRK06761 hypothetical protein; Provisional

Probab=98.90  E-value=1.3e-07  Score=77.80  Aligned_cols=38  Identities=34%  Similarity=0.385  Sum_probs=33.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      +++|+|+|++||||||+++.|++.+...++++..+..+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~   40 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEG   40 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecC
Confidence            56899999999999999999999999888888775543

>PRK07261 topology modulation protein; Provisional

Probab=98.89  E-value=6.8e-09  Score=79.73  Aligned_cols=32  Identities=31%  Similarity=0.265  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .|+|+|++||||||+++.|++.++...++.+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~   33 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT   33 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence            58999999999999999999988665555443

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.86  E-value=1.8e-07  Score=77.48  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=40.9

Q ss_pred             CCCEEEEeecCHHHHHHhcCCC--CC-Cccc---HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFG--DE-RYEQ---TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r--~~-~~~~---~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      ....+|||+++++++.+|+..+  .+ ...+   .+.+...++.++.......++||++ .+++++.+.|.+.+..
T Consensus        85 ~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416         85 IDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             CcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence            3446899999999999998642  11 1222   2222222222222221123788876 6899999988887743

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.85  E-value=1.4e-08  Score=79.64  Aligned_cols=28  Identities=14%  Similarity=0.108  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+++|+|.|+|||||||+++.|++.++.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~   29 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAI   29 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            5789999999999999999999998765

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.80  E-value=1.2e-08  Score=79.28  Aligned_cols=36  Identities=33%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEeeCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVNFP   45 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~~~   45 (227)
                      +|.|.|++||||||+|+.|++.+. ...++.+.+..+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            489999999999999999999983 444554444433

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.78  E-value=2.8e-07  Score=79.84  Aligned_cols=176  Identities=15%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      .+.|+|+|++|||||||++.|+++++...     +.+..     .+.+.+-.....   .+.+.... .+.  ....  .
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~-----v~E~~-----R~~~~~~~~~~~~~l~~~D~~~i-a~~--~~~~--~  283 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANIFNTTS-----AWEYG-----REYVFSHLGGDEMALQYSDYDKI-ALG--HAQY--I  283 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHhCCCe-----eeecc-----HHHHHHhhcCCccCCChhhhHHH-Hhh--hHHH--H
Confidence            45799999999999999999999875432     11111     011111111111   11111111 000  1111  1


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      -........++++                 |+-..++..|.....+.....+..+.... ..|++++++.++.-...=+.
T Consensus       284 ~~~~~~a~~~~f~-----------------Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~-ryDlvlll~pd~Pwv~DGlR  345 (399)
T PRK08099        284 DFAVKYANKVAFI-----------------DTDFVTTQAFCKKYEGREHPFVQALIDEY-RFDLTILLENNTPWVADGLR  345 (399)
T ss_pred             HHHHHhcCCeEEE-----------------eCChHHHHHHHHHhCCCCCHHHHHHHHhC-CCCEEEEcCCCCCcccCCcc
Confidence            1112234668888                 99999888887665443334444444332 46788888555333222000


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874        165 FGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~  218 (227)
                      ...+.-....+...+.+.|+...- ++++|+ +++.++-+.+..+.|++++..+
T Consensus       346 ~~~D~e~R~~f~~~l~~~l~~~g~-~~v~l~-~g~~~eR~~~a~~~i~~~l~~~  397 (399)
T PRK08099        346 SLGSSVDRKRFQNLLKEMLKENNI-EYVHVE-SPDYDKRYLRCVELVDQMLGEQ  397 (399)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCC-CEEEEC-CCCHHHHHHHHHHHHHHHhhcc
Confidence            000111124455555556655432 677773 4579999999999999888654

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.78  E-value=9.5e-09  Score=91.29  Aligned_cols=131  Identities=13%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+.+|++.|+|||||||+++.++...+...++.+.             +..          +          ......+
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~-------------lg~----------~----------~~~~~~a  413 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADT-------------LGS----------T----------QNCLTAC  413 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHH-------------HHH----------H----------HHHHHHH
Confidence            457899999999999999999998876543332111             110          0          0011356


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..++.+|..||+                 |.    +++....+     ..+..+.+....+-..+++++|.+++.+|+..
T Consensus       414 ~~~L~~G~sVVI-----------------Da----Tn~~~~~R-----~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~  467 (526)
T TIGR01663       414 ERALDQGKRCAI-----------------DN----TNPDAASR-----AKFLQCARAAGIPCRCFLFNAPLAQAKHNIAF  467 (526)
T ss_pred             HHHHhCCCcEEE-----------------EC----CCCCHHHH-----HHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHh
Confidence            677888988888                 72    22222222     22233444444566799999999999999976


Q ss_pred             CCCC-cc----cHHHHHHHHHHHHHHhhC----CeEEEc
Q psy16874        166 GDER-YE----QTDFQRKVAENYEKLKDN----IWIDID  195 (227)
Q Consensus       166 r~~~-~~----~~~~~~~~~~~~~~~~~~----~~~~Id  195 (227)
                      |... ..    ....+..+.+.|+.....    .++.|+
T Consensus       468 R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~EGF~~I~~v~  506 (526)
T TIGR01663       468 RELSDSAHIKIKDMVFNGMKKKFEAPALAEGFIAIHEIN  506 (526)
T ss_pred             hccCCcccCCCCHHHHHHHHhhCCCCCcccCceEEEEEe
Confidence            6321 11    134555666666544322    455555

Note that the EC number for the kinase function is: 2.7.1.78

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.77  E-value=2.1e-08  Score=72.66  Aligned_cols=22  Identities=50%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      |+|.|++||||||+++.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997

...

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.76  E-value=7.4e-08  Score=75.64  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +|.|.|++||||||+++.|...+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999988

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.76  E-value=1.7e-07  Score=77.50  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=27.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.|++|+|.|++||||||++..|+++|+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~  119 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIR  119 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            468899999999999999999999999654

>KOG3062|consensus

Probab=98.70  E-value=4.9e-07  Score=70.86  Aligned_cols=140  Identities=17%  Similarity=0.195  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCC-eEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIP-SQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      .+|+|+|.|.|||||.++.|+++|...+-. +.. +....    +|-     -.+........+.    +.|-.....+.
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~-----~~ns~y~~s~~EK----~lRg~L~S~v~   68 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGI-----EKNSNYGDSQAEK----ALRGKLRSAVD   68 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCC-----CCcccccccHHHH----HHHHHHHHHHH
Confidence            479999999999999999999999988754 333 22111    110     0000000111111    00111113455


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCccc-chhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYS-FSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+.++++||+                 |.-- +.||-|..+.          ..+.......+|+..+|.+.+++=...
T Consensus        69 R~Lsk~~iVI~-----------------DslNyIKGfRYeLyC----------~ak~~~tt~Cvv~t~vp~e~~r~~Ns~  121 (281)
T KOG3062|consen   69 RSLSKGDIVIV-----------------DSLNYIKGFRYELYC----------EAKAARTTYCVVHTAVPQELCREWNSE  121 (281)
T ss_pred             hhcccCcEEEE-----------------ecccccccceeeeee----------ehhccceeEEEEEecCCHHHHHHhccc
Confidence            56778999999                 8442 2344444333          112222344689999999999887765


Q ss_pred             CCCCcc---cHHHHHHHHHHHHHHhh
Q psy16874        166 GDERYE---QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       166 r~~~~~---~~~~~~~~~~~~~~~~~  188 (227)
                      +.+.-+   ..+.++.+-..|++...
T Consensus       122 ~~~p~e~gy~~e~le~L~~RyEeP~s  147 (281)
T KOG3062|consen  122 REDPGEDGYDDELLEALVQRYEEPNS  147 (281)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhCCCc
Confidence            544322   36777888888877654

>KOG3308|consensus

Probab=98.68  E-value=3.3e-07  Score=70.63  Aligned_cols=41  Identities=29%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNFPD   46 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~~~   46 (227)
                      ++..+|.|.|.+.|||||+|+.|.+.++.. .|+-+++-+|.
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~   43 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPE   43 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCch
Confidence            456789999999999999999999998753 44445565554

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1e-07  Score=75.81  Aligned_cols=147  Identities=15%  Similarity=0.089  Sum_probs=90.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      ...+|+|+|-++|||.-.++.+.++|+.++..+..+..|+. .   +.-+.|+                       ....
T Consensus        73 ~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~-~---E~~qwY~-----------------------qRy~  125 (270)
T COG2326          73 QRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTD-R---ERGQWYF-----------------------QRYV  125 (270)
T ss_pred             CeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCCh-H---hhccHHH-----------------------HHHH
Confidence            45689999999999999999999999999999998888752 1   1112221                       2222


Q ss_pred             HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh----------hhhhcccCCCCCCCEEEEeecC
Q psy16874         87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI----------SWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                      +.+ ..|.+|+.                 ||+||....-.........          ..++.+.-.....-+.+||.++
T Consensus       126 ~~lPa~GeiviF-----------------dRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is  188 (270)
T COG2326         126 AHLPAAGEIVIF-----------------DRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSIS  188 (270)
T ss_pred             HhCCCCCeEEEe-----------------chhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCC
Confidence            233 36888888                 9999863322211101111          1111111223344579999999


Q ss_pred             HHHHHHhcCCCCCCc------c-----cHHHHHHHHHHHHHHhhC------CeEEEcCC
Q psy16874        156 EEALQRRKGFGDERY------E-----QTDFQRKVAENYEKLKDN------IWIDIDAD  197 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~------~-----~~~~~~~~~~~~~~~~~~------~~~~Id~~  197 (227)
                      .++..+|...|.+.-      +     +.+.......+|++....      ||++|-++
T Consensus       189 ~eeQ~~RF~~R~~dP~K~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~ad  247 (270)
T COG2326         189 REEQLERFLERRNDPLKQWKLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPAD  247 (270)
T ss_pred             HHHHHHHHHHHhcCHHhccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCC
Confidence            999999997653221      1     122222333355554421      99999988

>PRK15453 phosphoribulokinase; Provisional

Probab=98.65  E-value=1.4e-07  Score=77.16  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++++|+|+|.+||||||+++.|++.++..++.+..+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~   40 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE   40 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence            46789999999999999999999999987666654443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.63  E-value=1.1e-06  Score=70.66  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .++.+|.|.|++||||||+++.|+..+...+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            467899999999999999999999999876544

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.60  E-value=2.1e-08  Score=72.28  Aligned_cols=30  Identities=37%  Similarity=0.417  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      +|+|.|+|||||||+|+.|++.++..++++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~   30 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISM   30 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence            589999999999999999999997654443

...

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.60  E-value=9.6e-07  Score=76.91  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      .+|.+|+|.|++||||||++..|+..++.. .++++.++
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR  291 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVR  291 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHH
Confidence            358999999999999999999999999875 33544433

>PHA03134 thymidine kinase; Provisional

Probab=98.58  E-value=4.5e-06  Score=69.74  Aligned_cols=173  Identities=16%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCHH-H-H----HH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPDQ-A-A----HL   72 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~~-~-~----~~   72 (227)
                      .-..|+|+|+.|.||||.++.|... ...+-++.++.||-..  .-++ +.+..++..     .+++... . .    .+
T Consensus        12 ~~~rvYlDG~~GvGKTT~~~~l~~~-~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~Q   90 (340)
T PHA03134         12 RIVRIYLDGAYGIGKSTTGRVMASA-ASGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHYQ   90 (340)
T ss_pred             cEEEEEEeCCCcCCHHHHHHHHHHh-ccCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHHH
Confidence            3346999999999999999888773 3334456777776311  0111 234444332     2223222 1 1    11


Q ss_pred             HHHhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhh---hhhccC-CCChhhhhcccCCCC--C
Q psy16874         73 LFSANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA---FSAAKE-GMDISWCFQPEKGLP--K  145 (227)
Q Consensus        73 ~~~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~--~  145 (227)
                      .-++..+... ..+.+.+..+..        ........-+|+||+..+...   ...... .+....+..+...++  .
T Consensus        91 ~~fatP~~~~~~~~~~~~~~~~~--------~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~  162 (340)
T PHA03134         91 ARFATPYLILHDRLSTLFGPPSL--------ARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREP  162 (340)
T ss_pred             HHhcChHHHHHHHHHHhcCCCCC--------CCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCC
Confidence            1222222222 233444332110        000111223577999876433   222222 233344444443333  2


Q ss_pred             C-CEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        146 P-DAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       146 p-d~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      | +.+|+++.++++..+|+.+|.+..|  +.+++..++..|.-+.+
T Consensus       163 pG~niVl~~l~~~e~~~Rl~~R~R~gE~id~~yL~~l~n~Y~~l~n  208 (340)
T PHA03134        163 PGGNLVVTTLNPDEHLRRLRARARIGEQIDAKLIAALRNVYAMLVN  208 (340)
T ss_pred             CCCeEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Confidence            5 8999999999999999987655444  47888888887776653

>PHA03135 thymidine kinase; Provisional

Probab=98.56  E-value=4.8e-06  Score=69.66  Aligned_cols=169  Identities=15%  Similarity=0.045  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--CchHHHHHHHhh-----cCCCCHHH------HHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--STGHIIDEYLRK-----KIELPDQA------AHLLFS   75 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~------~~~~~~   75 (227)
                      ..|+|+|+.|+||||+++.|++.. ..+-++..+.||-...  -+.+.+..++..     .+.+....      ..+.-+
T Consensus        11 ~rIYlDG~~GvGKTT~~~~l~~~~-~~~~~vl~vpEPM~YWr~~f~d~i~~Iy~tq~r~~~G~ls~~~as~~~~~~Q~kf   89 (343)
T PHA03135         11 IRVYLDGPFGIGKTSMLNEMPDHS-PDGVPVLKVFEPMKYWRCYFTDLVVAVNDTPERRRRGELSLFQSSMIVAALQAKF   89 (343)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc-CCCCceEEecCcHHHHHHHHHHHHHHHHHHHhhhhcCCcchhhccHHHHHHHHHh
Confidence            358999999999999998888743 2233466677763211  112233333332     12222110      011111


Q ss_pred             hhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhh---hhcc-CCCChhhhhccc----CCCCCC
Q psy16874         76 ANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF---SAAK-EGMDISWCFQPE----KGLPKP  146 (227)
Q Consensus        76 ~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~---~~~~-~~~~~~~~~~~~----~~~~~p  146 (227)
                      +..+... ..+.+.+... .        ........-+|+||+..+...-   .... ..+....+..+.    ...+..
T Consensus        90 atP~~~~~~~l~~~~~~~-~--------~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~~~l~sl~~~lp~~~pG~  160 (343)
T PHA03135         90 ADPYLVFHERLSSKCHGK-I--------GTRGNPSLILILDRHPVSATVCFPIARHLLGDCSLEMLISSIIRLPLEPPGC  160 (343)
T ss_pred             cchHHHHHHHHHHHhccc-C--------CCCCCCCceEEEecCCCCCceeeehhhcccCCCCHHHHHHHHHhCCcCCCCC
Confidence            2222221 2222222211 0        0000111224669998764332   2211 123333333332    223334


Q ss_pred             CEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHh
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLK  187 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~  187 (227)
                      +++|+...++++..+|+.+|++..|  +.+++..++..|.-+.
T Consensus       161 niVl~~L~~~~E~~rRl~~R~R~gE~~d~~yL~aL~n~Y~~l~  203 (343)
T PHA03135        161 NLVITILPDEKEHVNRLSSRNRPGETTDRNMLRALNAVYSSLV  203 (343)
T ss_pred             eEEEEECCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence            5666665578999999987754444  4688888888776654

>COG3911 Predicted ATPase [General function prediction only]

Probab=98.56  E-value=9.7e-07  Score=64.96  Aligned_cols=153  Identities=13%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+++.++++++|.||+||||+.+.|++.    |+-+  ..++.     ...+..--.+++-..+|.....|+.....  .
T Consensus         5 ~~nR~~~fIltGgpGaGKTtLL~aLa~~----Gfat--vee~~-----r~ii~~es~~gg~~lPW~D~~afael~~~--~   71 (183)
T COG3911           5 PFNRHKRFILTGGPGAGKTTLLAALARA----GFAT--VEEAG-----RDIIALESAQGGTALPWTDPGAFAELVGL--Q   71 (183)
T ss_pred             ccccceEEEEeCCCCCcHHHHHHHHHHc----Ccee--eccch-----hhHHHHHHhcCCCcCCccChHHHHHHHHH--H
Confidence            3455678999999999999999888874    4332  22221     12222222334333334333333221111  1


Q ss_pred             HHHHH--HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCC-hhhhhcccCCCCCCCEEEEeecCHHHHH
Q psy16874         84 TLTKL--IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMD-ISWCFQPEKGLPKPDAVLLFKLNEEALQ  160 (227)
Q Consensus        84 ~i~~~--~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pd~vi~L~~~~e~~~  160 (227)
                      .+.+.  .+.+..|+.                 ||.+.+..++...--|.. ...+..+.... ...--+||.-|...+.
T Consensus        72 ~l~q~r~~~~~~~vFf-----------------DR~~~da~a~l~~lsga~la~~v~~~~~~~-~Yn~rVfl~qp~~~iy  133 (183)
T COG3911          72 RLRQTRSAAVGGRVFF-----------------DRGPPDALAYLRFLSGALLADEVATIVREG-RYNPRVFLVQPWPFIY  133 (183)
T ss_pred             HHHHhhcccccCceee-----------------ccCcHHHHHHHHHhcccHHHHHHHHHHHhc-CCCCcEEecCCccccc
Confidence            11111  245666776                 999988766654221211 01122222221 1122455555555555


Q ss_pred             HhcCCCCCCccc-HHHHHHHHHHHHHHh
Q psy16874        161 RRKGFGDERYEQ-TDFQRKVAENYEKLK  187 (227)
Q Consensus       161 ~R~~~r~~~~~~-~~~~~~~~~~~~~~~  187 (227)
                      +--..|.-..+. ..+.+.+.++|..+.
T Consensus       134 qqde~Rk~tldeAv~~~e~lv~aYt~LG  161 (183)
T COG3911         134 QQDEERKITLDEAVAFYEVLVAAYTELG  161 (183)
T ss_pred             cchhhcccCHHHHHHHHHHHHHHHHhcC
Confidence            544333333332 667778888888874

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.52  E-value=6.2e-07  Score=71.66  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh--CCCCeEEe
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK--NNIPSQFV   42 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~--~~~~~~~~   42 (227)
                      +|.|.|++||||||+++.|...+..  .+.++..+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi   35 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELI   35 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEE
Confidence            4889999999999999999999974  34444443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA03138 thymidine kinase; Provisional

Probab=98.52  E-value=4.6e-06  Score=69.76  Aligned_cols=155  Identities=15%  Similarity=-0.006  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCH-----HHH-HHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPD-----QAA-HLLF   74 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~-----~~~-~~~~   74 (227)
                      ..|+|+|+.|+||||.++.+.+.+...+-.+.++.||-..  .-.+ +.+..++..     .+++..     +.. .+.+
T Consensus        13 ~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm~yWr~v~~~d~l~~iY~~q~r~~~G~~S~~da~~~~a~~Q~~   92 (340)
T PHA03138         13 LRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPLMYWRNLAGDDAICGIYGTQTRRKNGDISDEDAQRLTAHFQGL   92 (340)
T ss_pred             EEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCchHHHHHhccccHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Confidence            4699999999999999998888766544446677777421  1112 345555522     112211     221 3344


Q ss_pred             Hhhhhhhhh-HHHHHHHcCCEEEEecccccccccCCCC---CCCCcccchhh---hhhhccC-CCChhhhhccc----CC
Q psy16874         75 SANRWEREP-TLTKLIEQGITLEIMHSSLENEKNLDQG---CTNDRYSFSGV---AFSAAKE-GMDISWCFQPE----KG  142 (227)
Q Consensus        75 ~~~~~~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g---~i~Dr~~~~~~---~~~~~~~-~~~~~~~~~~~----~~  142 (227)
                      ++..+.... .+...+.....-.       .......+   +|+||+.++..   |...+.. .+....+..+.    ..
T Consensus        93 f~tP~~~~~~~~~~~l~~~~~~~-------~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L~~~~p~~  165 (340)
T PHA03138         93 FCSPHAILHAKILALMDQNPNDL-------ALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGFLFALPAE  165 (340)
T ss_pred             hhhhHHHHHHHHHHHhccccCcc-------ccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence            444444332 3333333220000       00011112   35599988743   3333322 23323232221    22


Q ss_pred             CCCCCEEEEeecCHHHHHHhcCCCCCCcc
Q psy16874        143 LPKPDAVLLFKLNEEALQRRKGFGDERYE  171 (227)
Q Consensus       143 ~~~pd~vi~L~~~~e~~~~R~~~r~~~~~  171 (227)
                      .+..++||++..++| ..+|+.+|.+..|
T Consensus       166 ~~g~nLVv~~l~~~E-~~~RL~~R~R~gE  193 (340)
T PHA03138        166 PEGTNLIVCTVSLPN-HLSRISKRARPGE  193 (340)
T ss_pred             CCCCcEEEEeCCcHH-HHHHHHhcCCCcc
Confidence            345578888875555 9999987754444

>COG4639 Predicted kinase [General function prediction only]

Probab=98.51  E-value=3.5e-07  Score=67.76  Aligned_cols=73  Identities=15%  Similarity=0.100  Sum_probs=44.1

Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      ..+.+.+.+|+..|.                 |-       .+...  .+..-+..+..........|++++|++.|.+|
T Consensus        60 ~~l~qrl~~Gk~tii-----------------dA-------tn~rr--~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aR  113 (168)
T COG4639          60 KQLEQRLRRGKFTII-----------------DA-------TNLRR--EDRRKLIDLAKAYGYKIYAIVFDTPLELCLAR  113 (168)
T ss_pred             HHHHHHHHcCCeEEE-----------------Ec-------ccCCH--HHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHH
Confidence            456677889988888                 71       11110  11133444555555667789999999999999


Q ss_pred             cCCCCCCcccHHHHHHHHHH
Q psy16874        163 KGFGDERYEQTDFQRKVAEN  182 (227)
Q Consensus       163 ~~~r~~~~~~~~~~~~~~~~  182 (227)
                      ...+ ++.-+.+.+.+....
T Consensus       114 Nk~~-~Rqv~~~VI~r~~r~  132 (168)
T COG4639         114 NKLR-ERQVPEEVIPRMLRE  132 (168)
T ss_pred             hhcc-chhCCHHHHHHHHHH
Confidence            8633 333334444444443

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=98.50  E-value=1.1e-05  Score=60.25  Aligned_cols=169  Identities=17%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhhhHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.++|.|+--|||||+++.|+..++...           ...++.....-...+.   ...++....      ..+..-.
T Consensus         9 K~VailG~ESsGKStLv~kLA~~fnt~~-----------~wEY~Re~v~~~l~gdeal~y~Dy~~ia------~Gq~~~~   71 (187)
T COG3172           9 KTVAILGGESSGKSTLVNKLANIFNTTS-----------AWEYGREYVFEHLGGDEALQYSDYAKIA------LGQAAYE   71 (187)
T ss_pred             eeeeeecCcccChHHHHHHHHHHhCCCc-----------hhHHHHHHHHHHhCCchhhhhccHHHHH------hhhHHHH
Confidence            5799999999999999999999886411           1112211111111122   111111110      0011111


Q ss_pred             HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ..+. ....++++                 |--..++.+++....|..-.++...-... ..|++|.|.-.  +-+-  .
T Consensus        72 d~av~~a~~v~fi-----------------DTD~itT~~~~~~y~gr~~P~~~~~i~~~-r~DL~lLl~p~--t~wv--a  129 (187)
T COG3172          72 DAAVRYANKVAFI-----------------DTDFLTTQAFCKKYEGREHPFLQALIAEY-RFDLTLLLEPN--TPWV--A  129 (187)
T ss_pred             HHHHhCCCceEEE-----------------eccHHHHHHHHHHHcccCCchHHHHHhhc-ccceEEEcCCC--Ccee--C
Confidence            1111 24567777                 87777777776555443324443332222 56888887544  3332  1


Q ss_pred             CCCCCc----ccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874        165 FGDERY----EQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       165 ~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~  218 (227)
                      .+.+..    +..++++.+.+..+.... ++++|++. +-.+-+.+..+.+.+++...
T Consensus       130 DG~R~~~~~~~R~~F~~~l~~~L~~~~~-~~v~i~~~-~y~eR~~~~~~aV~ell~~~  185 (187)
T COG3172         130 DGLRSLGSSVQRQEFQNLLEQMLEENNI-PFVVIEGE-DYLERYLQAVEAVEELLGEK  185 (187)
T ss_pred             CCccccccHhHHHHHHHHHHHHHHHhCC-cEEEEcCC-CHHHHHHHHHHHHHHHHhcc
Confidence            221222    235566666655555422 78888765 66778888888888887654

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.49  E-value=9.8e-07  Score=71.74  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|+|+|.+||||||+++.|.+.++..++++..+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            4899999999999999999999988777765544

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=3e-06  Score=67.73  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeC
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNF   44 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~   44 (227)
                      +|++|.+|.|-|++|.||||++..|+..|+.. .++.+.+++
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            45779999999999999999999999999865 445454544

>PRK05439 pantothenate kinase; Provisional

Probab=98.45  E-value=2.2e-06  Score=71.59  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~   43 (227)
                      +++.+|.|.|++||||||+|+.|.+.+...  +.++..+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~  123 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT  123 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence            467899999999999999999999988753  44554433

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.44  E-value=4.1e-07  Score=75.33  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.|.+|.|.|++||||||+++.|...+..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~   88 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSR   88 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            56889999999999999999999988863

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG4238|consensus

Probab=98.40  E-value=5.8e-07  Score=75.04  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=33.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++..|+++|.+|+||||++-.|.+.|...||+|..+.
T Consensus        49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ld   85 (627)
T KOG4238|consen   49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD   85 (627)
T ss_pred             cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccC
Confidence            4678999999999999999999999999999997765

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.39  E-value=6.2e-06  Score=67.49  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=37.8

Q ss_pred             CCCEEEEeecCHHHHHHhcCC--CCCCccc-------HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGF--GDERYEQ-------TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~--r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      ..--+|||+|+.+++.+|-..  |......       .+.-+.+.+..+..+   -++||++ .++.+..+.|.+.+
T Consensus        81 ~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~A---d~vIDTs~l~~~~Lr~~i~~~~  154 (284)
T PF03668_consen   81 IDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERA---DLVIDTSNLSVHQLRERIRERF  154 (284)
T ss_pred             CceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhC---CEEEECCCCCHHHHHHHHHHHh
Confidence            334699999999999999854  2222221       122222222333333   4889977 77777655555544

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.35  E-value=7.6e-07  Score=57.77  Aligned_cols=32  Identities=34%  Similarity=0.448  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|+|+|++||||||+++.|++.+  .+.++..+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~   32 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLD   32 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence            47899999999999999999998  445555444

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.33  E-value=2.9e-06  Score=62.74  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +|+|+||+||||||+++.|.+.+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCc
Confidence            4789999999999999999997653

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.31  E-value=1.4e-05  Score=67.56  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHH-HHHHHHhhhhhhhhHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA-AHLLFSANRWEREPTLT   86 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~   86 (227)
                      +..|+|.|++||||||+++.|+..++.   ++  +.++.     -+.+++....+..+...- ...+...  .   ....
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~---~~--v~E~~-----R~~~~~~~~~~~~l~~~d~~~i~~g~--~---~~~~  226 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNT---TS--AWEYA-----REYVEEKLGGDEALQYSDYAQIALGQ--Q---RYID  226 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCC---CE--Eeehh-----HHHHHHhcCCCcccCHHHHHHHHHHH--H---HHHH
Confidence            457999999999999999999997754   22  22221     112222221122222111 0111110  0   0111


Q ss_pred             HHHH-cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIE-QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~-~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .++. ...++++                 |+-..++..|.....+....++...... ...|+++++..+.+  +.--..
T Consensus       227 ~~~~~a~~iif~-----------------D~~~~~t~~y~~~~~~~~~~~~~~~~~~-~~ydl~~l~~p~~~--~~~D~~  286 (325)
T TIGR01526       227 YAVRHAHKIAFI-----------------DTDFITTQVFAKQYEGREHPFLDSDIAE-YPFDLTLLLKPNTE--WVDDGL  286 (325)
T ss_pred             HHHhhcCCeEEE-----------------cCChHHHHHHHHHHcCCCCHHHHHHHHh-cCCCEEEECCCCCC--CccCCc
Confidence            2222 4568888                 9998888887766533222333222222 35677777766644  443322


Q ss_pred             CCCCcc--cHHHHHHHHHHHHHHhhCCeEEEcC
Q psy16874        166 GDERYE--QTDFQRKVAENYEKLKDNIWIDIDA  196 (227)
Q Consensus       166 r~~~~~--~~~~~~~~~~~~~~~~~~~~~~Id~  196 (227)
                      |....+  ...+.+.+.+.+++..- .+++|.+
T Consensus       287 R~~~~~~~R~~~~~ll~~~l~~~G~-~~v~Vtg  318 (325)
T TIGR01526       287 RSLGSQKQRQEFQQLLKKLLDEYGV-PFVVIES  318 (325)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHcCC-cEEEEeC
Confidence            222221  13444455555555432 6677765

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.27  E-value=1.9e-06  Score=64.41  Aligned_cols=35  Identities=23%  Similarity=0.170  Sum_probs=31.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .++-|.|+|+||+||||++..+++.|...|+++.-
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG   38 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG   38 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence            46779999999999999999999999999998854

>PLN02165 adenylate isopentenyltransferase

Probab=98.25  E-value=1e-06  Score=73.96  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      .++.+|+|.||+||||||++..|++.++...++++
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD   75 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSD   75 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence            34679999999999999999999999886555654

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.24  E-value=2.4e-06  Score=65.41  Aligned_cols=42  Identities=24%  Similarity=0.304  Sum_probs=35.8

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      |+.  +.+.++.|.|++||||||+++.|...+...++.+..+..
T Consensus         1 ~~~--~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~   42 (173)
T PRK10751          1 MNK--TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (173)
T ss_pred             CCC--CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            555  456789999999999999999999999988988877653

>PLN02348 phosphoribulokinase

Probab=98.24  E-value=1.3e-05  Score=68.59  Aligned_cols=30  Identities=17%  Similarity=0.194  Sum_probs=27.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +++.+|.|.|++||||||+++.|+..|+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~   76 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA   76 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            467899999999999999999999999754

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.23  E-value=1.2e-06  Score=68.97  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|.+|++.|+|||||||+++.+...+.
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~   40 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFG   40 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence            5789999999999999999999999874

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.23  E-value=3.4e-06  Score=68.36  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      +.+.+|.+.|++|+||||++..|...+...+-+
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            457899999999999999999999999866444

>PHA00729 NTP-binding motif containing protein

Probab=98.19  E-value=1.4e-05  Score=63.57  Aligned_cols=27  Identities=33%  Similarity=0.135  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ....|+|+|+||+||||+|..|++.+.
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999876

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.19  E-value=1.7e-06  Score=67.74  Aligned_cols=29  Identities=52%  Similarity=0.655  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      +|.|.|++||||||+++.|+..|+..+++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            68999999999999999999999988877

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0707|consensus

Probab=98.19  E-value=4.7e-05  Score=60.22  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPD   46 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~   46 (227)
                      +-|+++||+|+||+|+.++|.+.++. -+++|-+ ++.|.
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr   77 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPR   77 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCC
Confidence            56999999999999999999999986 3555544 44443

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.16  E-value=5.2e-05  Score=60.42  Aligned_cols=36  Identities=33%  Similarity=0.436  Sum_probs=31.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+|++.|.||.|||+++..|...|.|.|+++..+.
T Consensus        12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn   47 (222)
T PF01591_consen   12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFN   47 (222)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceee
Confidence            457999999999999999999999999999998876

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.10  E-value=4.9e-06  Score=64.34  Aligned_cols=34  Identities=38%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.|.|++||||||+++.|++.+...+.++..+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~   34 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS   34 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            5899999999999999999999987777665543

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.09  E-value=9.5e-06  Score=72.71  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+.+|.|.|++||||||+++.|+..+.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            457899999999999999999998764

>PRK07429 phosphoribulokinase; Provisional

Probab=98.05  E-value=6.1e-06  Score=69.65  Aligned_cols=36  Identities=31%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      |+.+..++.+|.|.|++||||||+++.|+..++...
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~   36 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL   36 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence            666667788999999999999999999999987544

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.05  E-value=7.8e-06  Score=65.97  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC-C---C-CCCCchHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-P---D-RTISTGHIID   56 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~-~---~-~~~~~~~~~~   56 (227)
                      .+..+|.|+|+||+||||+...|.+.+...+..|..+.- |   . .+.-+|+.++
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiR   82 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIR   82 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGG
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHH
Confidence            356789999999999999999999999999999866332 2   2 2445566554

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PHA03133 thymidine kinase; Provisional

Probab=98.05  E-value=0.00018  Score=60.64  Aligned_cols=173  Identities=16%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--Cc-hHHHHHHHhh-----cCCCCHHHH------HHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--ST-GHIIDEYLRK-----KIELPDQAA------HLLF   74 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-----~~~~~~~~~------~~~~   74 (227)
                      ..|+|+|+.|.||||.++.+...++... ++.++.||-...  -+ .+.+..++..     .+++.....      .+.-
T Consensus        41 ~rvYlDG~~GvGKTTt~~~l~~a~~~~~-~vl~~pEPM~YWr~~f~sd~i~~IY~tq~r~~~GeiS~~~A~~~~~s~Q~k  119 (368)
T PHA03133         41 LRIYVDGPHGLGKTTTAAALAAALGRRD-DIEYVPEPMAYWQVLGGSETIARIFDAQHRLDRGEISAGEAAVAMTSAQVT  119 (368)
T ss_pred             EEEEEeCCCcCCHHHHHHHHHHhhCCCC-CeEEecCcHHHHHHHhhhhHHHHHHHHHHHHhccCcchhhhhhHHHHHHHH
Confidence            3699999999999999988888776543 366677763210  11 1333444332     122222221      1222


Q ss_pred             Hhhhhhhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchh---hhhhhccC-CCChhhhhcccCCC---CCC
Q psy16874         75 SANRWERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG---VAFSAAKE-GMDISWCFQPEKGL---PKP  146 (227)
Q Consensus        75 ~~~~~~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~---~~~~~~~~-~~~~~~~~~~~~~~---~~p  146 (227)
                      ++..+... ..+.+.+..+...     .....+....-+|+||+..+.   ||...+.. .+..+.+..+...+   +.=
T Consensus       120 FatPy~~~~~~~~~~~g~~~~~-----~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~lislla~lp~~~pG  194 (368)
T PHA03133        120 MSTPYAVTEAAVAPHIGGELPP-----GHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVLSFAALLPPTTPG  194 (368)
T ss_pred             hcChHHHHHHHHHHHhccCCCC-----CCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHHHHHHhCCCCCCC
Confidence            22222222 2333232211000     000000012235679998765   34333322 34445444443333   233


Q ss_pred             CEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHh
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLK  187 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~  187 (227)
                      +-+|.++.+.++..+|+.+|.+..|.  ..++..++..|.-+.
T Consensus       195 ~NiVl~~L~~~E~~~RL~~R~R~gE~~D~~~l~alrnvY~~l~  237 (368)
T PHA03133        195 TNLVLGALPEAAHAERLAQRQRPGERLDLAMLSAIRRVYDMLG  237 (368)
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence            67999999999999999887655553  567777777665553

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.03  E-value=2.4e-05  Score=64.53  Aligned_cols=28  Identities=21%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      +|.|.|++||||||+++.|+..++..+.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~   28 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV   28 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence            4889999999999999999998875543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.01  E-value=0.00017  Score=58.06  Aligned_cols=62  Identities=18%  Similarity=0.277  Sum_probs=37.1

Q ss_pred             EEEEeecCHHHHHHhcCC--CCCCccc-HHHHHHHH------HHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        148 AVLLFKLNEEALQRRKGF--GDERYEQ-TDFQRKVA------ENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       148 ~vi~L~~~~e~~~~R~~~--r~~~~~~-~~~~~~~~------~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      -++||+++.+++.+|...  |...... ...++.+.      .-....+.   ++||++ .++-+..+.|...+.
T Consensus        85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~---~vIDTs~ls~~~Lr~~i~~~f~  156 (286)
T COG1660          85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIAD---LVIDTSELSVHELRERIRTRFL  156 (286)
T ss_pred             eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhh---hEeecccCCHHHHHHHHHHHHc
Confidence            499999999999999864  2222321 11222332      22233333   788977 788776666655554

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.98  E-value=2.8e-05  Score=57.91  Aligned_cols=168  Identities=13%  Similarity=0.146  Sum_probs=88.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHHHHHHh--CCCCeEEeeC--CCCCCCchHHHHHH-Hhh-----cCCC---CHHH
Q psy16874          3 SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNK--NNIPSQFVNF--PDRTISTGHIIDEY-LRK-----KIEL---PDQA   69 (227)
Q Consensus         3 ~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~--~~~~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~---~~~~   69 (227)
                      ..++++++|++.|.+-||||+++..+-.....  .++-++.+-+  |......+   .-| +..     +..+   ....
T Consensus        18 ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a---~g~~~~~~v~~dg~~~v~v~~gp   94 (205)
T COG3896          18 AGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLA---RGYTWDSAVEADGLEWVTVHPGP   94 (205)
T ss_pred             cCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccc---cccccccccccCCceeeEeechh
Confidence            35678999999999999999999999886653  3444333222  11000000   000 000     0000   0000


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc-CCCCCCCE
Q psy16874         70 AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE-KGLPKPDA  148 (227)
Q Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pd~  148 (227)
                      ..-.-...+   ...|......|..++.                 |-+...            ..|+-.-. .....+..
T Consensus        95 i~e~~~~~~---r~ai~a~ad~G~~~i~-----------------Ddv~~~------------r~~L~Dc~r~l~g~~v~  142 (205)
T COG3896          95 ILELAMHSR---RRAIRAYADNGMNVIA-----------------DDVIWT------------REWLVDCLRVLEGCRVW  142 (205)
T ss_pred             HHHHHHHHH---HHHHHHHhccCcceee-----------------hhcccc------------hhhHHHHHHHHhCCceE
Confidence            000001111   1234444567777777                 744332            12331111 11224557


Q ss_pred             EEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHhhC--CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        149 VLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLKDN--IWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       149 vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~--~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      .+-+.||.|++.+|-..|+++.-.  ...       |+.....  .-+.+|++ .+|.|.+..|.+.++
T Consensus       143 ~VGV~~p~E~~~~Re~rr~dR~pG~~rg~-------~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         143 MVGVHVPDEEGARRELRRGDRHPGWNRGS-------ARAVHADAEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             EEEeeccHHHHHHHHhhcCCcCcchhhhh-------HHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence            899999999999988766554321  221       2222121  34788888 668899988887653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.96  E-value=1.2e-05  Score=66.00  Aligned_cols=52  Identities=19%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC-C---C-CCCCchHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-P---D-RTISTGHIIDE   57 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~-~---~-~~~~~~~~~~~   57 (227)
                      .++.+|.|+|+|||||||+...|..+|...|+.|..+.- |   . .+.-+|..++.
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM  105 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRM  105 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhH
Confidence            356789999999999999999999999999998865321 2   2 24455666653

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.91  E-value=1.7e-05  Score=61.33  Aligned_cols=29  Identities=21%  Similarity=0.164  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      +|.|.|..|||++|+++.|++.|+...++
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d   29 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYD   29 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCC
Confidence            68999999999999999999999876554

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.90  E-value=2.5e-05  Score=59.17  Aligned_cols=36  Identities=31%  Similarity=0.406  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|.|+|.+||||||+++.|...+...|+++..+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~   37 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH   37 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence            479999999999999999999999988988877653

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.90  E-value=0.00014  Score=63.77  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=33.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.+|.++|++||||||.+..|+..+...+.++..+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~  130 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA  130 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence            5789999999999999999999999998888887654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.89  E-value=2.4e-05  Score=66.07  Aligned_cols=38  Identities=18%  Similarity=0.073  Sum_probs=33.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|.|+|+|||||||+++.|...+...+.++..+.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~   91 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA   91 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            45779999999999999999999999998888887644

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.88  E-value=1.6e-05  Score=57.58  Aligned_cols=34  Identities=32%  Similarity=0.335  Sum_probs=28.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +..+.|.|++||||||++..|+..+...+..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~   35 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY   35 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEE
Confidence            4579999999999999999999999876544443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.86  E-value=2.4e-05  Score=59.17  Aligned_cols=37  Identities=30%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++++.|+|..+|||||+++.|...|..+|+.+..+..
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH   38 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH   38 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence            5789999999999999999999999999999977554

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.85  E-value=3.2e-05  Score=57.37  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++|.|+|+.+|||||+++.|...+..+|+.+..+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i   34 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI   34 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence            4689999999999999999999999999998753

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.85  E-value=2e-05  Score=59.32  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=26.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~   43 (227)
                      |+=++.+||||||++..|++-++ +-|+..+.+.
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~   35 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT   35 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence            45578999999999999999999 7676655543

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.85  E-value=2.5e-05  Score=58.98  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|+|.|++||||||+++.|...+...|+++..+.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4789999999999999999999998899987765

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.82  E-value=6.3e-05  Score=59.01  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |.+|++.||.|+||||.+.+|+.++...+.++..+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis   36 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS   36 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence            678999999999999999999999998888876644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.80  E-value=1.6e-05  Score=57.55  Aligned_cols=23  Identities=43%  Similarity=0.676  Sum_probs=21.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      |+|.|+||+||||+++.+++.++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999985

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02796 D-glycerate 3-kinase

Probab=97.79  E-value=3.6e-05  Score=64.98  Aligned_cols=37  Identities=22%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++|.+|.|.|++||||||+++.|...+...+.++..+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I  134 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASL  134 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence            3578899999999999999999999997666555443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.78  E-value=3.4e-05  Score=58.99  Aligned_cols=30  Identities=37%  Similarity=0.520  Sum_probs=26.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      |.|+|.||+||||+++.+.+.+...++++.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~   31 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG   31 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence            889999999999999999999987777763

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK09169 hypothetical protein; Validated

Probab=97.76  E-value=0.0001  Score=73.81  Aligned_cols=139  Identities=14%  Similarity=-0.020  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      ...|+++|.+|+||||+++.|++.++...++.+..-+.    ..+..|.+++...+ .....+.           ..+..
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek----s~GrkI~rIFa~eG-~FRe~Ea-----------a~V~D 2173 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK----KIGKKIARIQALRG-LSPEQAA-----------ARVRD 2173 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH----HhCCCHHHHHHhcC-chHHHHH-----------HHHHH
Confidence            34699999999999999999999998877665431111    11333444444333 3333333           45555


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+. ...|+.          .++|.+...              .....+   ..    -.++|||..+.+++.+|+..+.
T Consensus      2174 llr-~~vVLS----------TGGGav~~~--------------enr~~L---~~----~GlvV~L~an~~tl~~Rty~g~ 2221 (2316)
T PRK09169       2174 ALR-WEVVLP----------AEGFGAAVE--------------QARQAL---GA----KGLRVMRINNGFAAPDTTYAGL 2221 (2316)
T ss_pred             Hhc-CCeEEe----------CCCCcccCH--------------HHHHHH---HH----CCEEEEEECCHHHHHHHhccCC
Confidence            553 444443          455555550              001222   22    2379999999999999997532


Q ss_pred             C--------C-cc-------cHHHHHHHHHHHHHHhhCCeEEEcCC
Q psy16874        168 E--------R-YE-------QTDFQRKVAENYEKLKDNIWIDIDAD  197 (227)
Q Consensus       168 ~--------~-~~-------~~~~~~~~~~~~~~~~~~~~~~Id~~  197 (227)
                      +        . +|       ..+.++..+..|+++..   +.|+..
T Consensus      2222 NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvAD---l~V~~~ 2264 (2316)
T PRK09169       2222 NVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQD---LEVAPA 2264 (2316)
T ss_pred             CCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcC---cccccC
Confidence            1        1 11       12344455667777755   566644

>PRK14974 cell division protein FtsY; Provisional

Probab=97.75  E-value=8.6e-05  Score=62.91  Aligned_cols=37  Identities=38%  Similarity=0.549  Sum_probs=32.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.+|+|+|++||||||.+..|+..+...+.++..+.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            4789999999999999999999999988888876643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.75  E-value=0.00021  Score=66.16  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ...+|++.|.||+||||+++.|++.+++.++++..+..
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~  251 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIH  251 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEcc
Confidence            34589999999999999999999999999999887663

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.75  E-value=2.9e-05  Score=65.91  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=25.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.++++|.|||||||||+++.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3578999999999999999999999976

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.74  E-value=4.9e-05  Score=65.47  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .+|.+|+|+|.+||||||+++.|.+.|... ++|..++.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~   40 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH   40 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence            478999999999999999999999999988 88877653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.73  E-value=0.0001  Score=56.43  Aligned_cols=34  Identities=38%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++++|++||||||++..++..+...+.++..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~   35 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA   35 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            5889999999999999999999988888876655

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.73  E-value=3.4e-05  Score=56.48  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=26.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.+.+|++.|..||||||+++.+++.++..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            457799999999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.71  E-value=2.4e-05  Score=65.47  Aligned_cols=35  Identities=34%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .+++|+|+||+||||||++..|++.++...++++.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds   37 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS   37 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence            46799999999999999999999998765555543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.71  E-value=7.3e-05  Score=61.65  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|.|+|++|+||||.+..|+..+...+.++..+.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45688999999999999999999999988888886654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0744|consensus

Probab=97.71  E-value=3e-05  Score=64.25  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      -++|.+.||||.||||+|+.|+++|-.+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            4689999999999999999999998654

>PLN02840 tRNA dimethylallyltransferase

Probab=97.69  E-value=3.2e-05  Score=66.98  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=29.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      +++++|+|.||+||||||++..|++.++...+++
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~   52 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISA   52 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEec
Confidence            4567899999999999999999999998655544

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.68  E-value=7.6e-05  Score=64.47  Aligned_cols=38  Identities=21%  Similarity=0.072  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.+|.|.|+.||||||+++.|...+...+..+..+.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS  247 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS  247 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence            36789999999999999999999988876666655443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.68  E-value=8.5e-05  Score=62.60  Aligned_cols=38  Identities=21%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|.+|.|+||+||||||++..|+..+...+.+|..+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            35789999999999999999999999988888876654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.67  E-value=4.3e-05  Score=61.79  Aligned_cols=31  Identities=39%  Similarity=0.410  Sum_probs=25.1

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         13 FEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        13 i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |.||+||||||+|..+.+++...+.++..+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN   31 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN   31 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence            6899999999999999999998888876644

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.66  E-value=0.0001  Score=53.81  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+..+.|.|++|+||||+++.+.+.+...+.++..+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            3567999999999999999999999875555555544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0780|consensus

Probab=97.66  E-value=0.00018  Score=60.99  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=33.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|-+|.|.|.-||||||.|..|+.++...|+++..+.
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc  136 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC  136 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence            35779999999999999999999999999999986644

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.64  E-value=9.7e-05  Score=61.83  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=33.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+.+|.|+|++||||||++..|...+...+.++..+.
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~   69 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA   69 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45788999999999999999999999988888886644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.64  E-value=9.9e-05  Score=59.12  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.|+|++||||||++..|...|...|+++..+.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47999999999999999999999999999998765

>PRK13768 GTPase; Provisional

Probab=97.64  E-value=9.8e-05  Score=60.29  Aligned_cols=36  Identities=36%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++|+|.|++||||||++..++..+...|.++..+.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~   37 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN   37 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence            468999999999999999999999988888876643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.63  E-value=4.8e-05  Score=60.59  Aligned_cols=28  Identities=29%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.||+||||||+.+.|.--..
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4677999999999999999988887443

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.62  E-value=4.8e-05  Score=58.29  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.|+|++||||||+|..|+..++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcC
Confidence            5799999999999999999998764

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.62  E-value=0.00011  Score=60.65  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|.|+|.+||||||++..|...|...| .|..+..
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh   36 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH   36 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence            4799999999999999999999999998 7766554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.62  E-value=4.5e-05  Score=59.88  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..+|-+++|+||+||||||+.+-|..
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            35688999999999999999865543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.60  E-value=0.00013  Score=63.56  Aligned_cols=37  Identities=32%  Similarity=0.485  Sum_probs=32.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.+|.++|++||||||.+..|+..+...|.+|..+.
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~  135 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC  135 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            4689999999999999999999999988888876644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12377 putative replication protein; Provisional

Probab=97.59  E-value=0.0016  Score=52.99  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..++|.|++|+|||+++..++..+...+++|..+.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            46899999999999999999999998898887665

>PF13245 AAA_19: Part of AAA domain

Probab=97.58  E-value=9.2e-05  Score=48.87  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHH-HHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKT-TQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKS-T~~~~L~~~l   32 (227)
                      ..+.+|.|+|||||| |+++.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            556888999999999 5555555555

>PF05729 NACHT: NACHT domain

Probab=97.55  E-value=9.2e-05  Score=55.68  Aligned_cols=28  Identities=29%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      ++++|.|.+|+||||++..++..+...+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            4689999999999999999999887765

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.54  E-value=0.00014  Score=45.78  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +.+.+|.|+.||||||+...+.-.|
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4479999999999999998887655

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.54  E-value=6.6e-05  Score=60.20  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|-+++|.||+||||||+.+.++--...
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56789999999999999999999975544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.54  E-value=0.00015  Score=60.09  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~~   43 (227)
                      ++.+|+|.||.||||||++..|+..+... + .+|..+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~  231 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT  231 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            57799999999999999999999999765 4 7776655

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.54  E-value=0.00012  Score=60.00  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .+..++|.||||+||||+++.+++.+...+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            345789999999999999999999885443

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.53  E-value=0.00015  Score=62.38  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++++|.|+|.+||||||+++.|...|...|+++..+..
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh  241 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH  241 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            45689999999999999999999999999999877653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.52  E-value=7.7e-05  Score=56.49  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-.|.|+||+||||||+.+.++.-.
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            457789999999999999999998744

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.52  E-value=9e-05  Score=53.72  Aligned_cols=39  Identities=36%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC-----CCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN-----NIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~-----~~~~~~~~~~   45 (227)
                      +..+++|.|++|+||||+++.+.+.+...     ..++..+..+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP   46 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence            46789999999999999999999988653     4444444433

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.51  E-value=0.00018  Score=51.97  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      ++++|.++++-|++|+|||-+++.|++.+=..|..+..
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~   86 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPF   86 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCc
Confidence            45788899999999999999999999998766766543

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.51  E-value=0.00017  Score=62.40  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      |..|++.||||+||||+++.|++.++..++.++.
T Consensus        47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            5679999999999999999999999877766653

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK13695 putative NTPase; Provisional

Probab=97.50  E-value=0.00018  Score=55.19  Aligned_cols=31  Identities=26%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      |.|+|+|++||||||+++.+...+...|+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            4699999999999999999998876656664

>PRK10867 signal recognition particle protein; Provisional

Probab=97.49  E-value=0.00035  Score=61.16  Aligned_cols=38  Identities=34%  Similarity=0.441  Sum_probs=32.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      .+|.+|.++|++||||||.+..|+..+... |.+|..+.
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~  136 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA  136 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            347899999999999999999999999887 88876644

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.49  E-value=0.00019  Score=48.73  Aligned_cols=34  Identities=32%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|++.|..|+||||++..|+..+...+.++..++
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            3789999999999999999999988888875544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.49  E-value=0.00011  Score=51.58  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      ..+.+++|.|++||||||+++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            346789999999999999998876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.49  E-value=0.00016  Score=54.05  Aligned_cols=35  Identities=29%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +++|.|++|+||||++..++......+.++..+..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~   35 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI   35 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence            37899999999999999999998877777776553

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.48  E-value=0.00023  Score=54.98  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CCc-eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRG-AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~-~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      +++ ..|.|.|||||||||+.+.+.+.|... +++..+
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI   46 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVI   46 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEE
Confidence            456 679999999999999999999999776 565443

>KOG1384|consensus

Probab=97.47  E-value=0.00051  Score=57.09  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +-++|+|.|+.|||||-|+--||.+++..-|+.+.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk   40 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK   40 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence            45789999999999999999999998876666543

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=97.47  E-value=0.00018  Score=62.44  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|.|+|..||||||+++.|...|...|++|..++.
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH   37 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH   37 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            479999999999999999999999999999987664

>PRK04296 thymidine kinase; Provisional

Probab=97.47  E-value=0.00021  Score=55.78  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=31.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      +.+++++|++||||||++-.++..+...+..+..+
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            67899999999999999999999988778777765

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.47  E-value=0.00026  Score=55.82  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +++.++.|.|+|||||||++-.++......+.++.++..
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~   48 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT   48 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            467899999999999999999999887777778877653

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.47  E-value=0.0021  Score=55.57  Aligned_cols=38  Identities=37%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.+|.+.|.=||||||-|..|+.+|...+.++..+.
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVa  135 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVA  135 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEe
Confidence            45789999999999999999999999999999886644

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.47  E-value=0.0002  Score=56.26  Aligned_cols=26  Identities=38%  Similarity=0.710  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +|+|.||+||||||++..|...+...
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~   28 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            68999999999999999988888643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.45  E-value=0.00021  Score=61.84  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD   46 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~   46 (227)
                      |.|.|+||+||||++..|++.+...|-=|..+..|.
T Consensus       266 ILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPR  301 (604)
T COG1855         266 ILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPR  301 (604)
T ss_pred             eEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcc
Confidence            789999999999999999999999887666677674

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.00025  Score=61.08  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.+|+|.|+.||||||.+..|+..+...+.++..+.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~  276 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT  276 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4678999999999999999999999988888887655

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.44  E-value=0.00015  Score=52.43  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.+.+|.+.|.-||||||+++.+++.++..
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            467899999999999999999999988653

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.44  E-value=9.4e-05  Score=58.73  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..++|.||||.||||++..+++.++.
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~   76 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGV   76 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred             ceEEEECCCccchhHHHHHHHhccCC
Confidence            46899999999999999999998875

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>cd01394 radB RadB

Probab=97.44  E-value=0.00029  Score=56.00  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|+|||||||++-.++......+.++.++.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~   54 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45789999999999999999999998877787887765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>CHL00181 cbbX CbbX; Provisional

Probab=97.44  E-value=0.0002  Score=59.60  Aligned_cols=31  Identities=39%  Similarity=0.490  Sum_probs=26.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      .+..++|.|+||+||||+++.+++.+...|+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~   88 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY   88 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            4567999999999999999999998865544

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.44  E-value=0.00022  Score=61.74  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=29.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      |..|+++||+|+||||+++.|++.++...+.++.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            5679999999999999999999999876666643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.43  E-value=0.00013  Score=53.62  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      |++.|++|+|||++++.|++.++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999999993

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=97.43  E-value=0.0057  Score=50.19  Aligned_cols=76  Identities=17%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             CCCCcccchhh---hhhhcc-CCCChhhhhcccCCCC---CCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHH
Q psy16874        112 CTNDRYSFSGV---AFSAAK-EGMDISWCFQPEKGLP---KPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAEN  182 (227)
Q Consensus       112 ~i~Dr~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~---~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~  182 (227)
                      +|+||+..+..   |..... ..+..+.+..+...++   .-+.+|.++.+.++..+|+.+|.+..|  +..++..++..
T Consensus       105 ~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~rRl~~R~R~gE~vd~~~l~~Lr~~  184 (281)
T PF00693_consen  105 LIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHLRRLKARGRPGERVDLNYLRALRNV  184 (281)
T ss_dssp             EEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHHHHHHHTSTTT-S--HHHHHHHHHH
T ss_pred             EEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence            56799987643   333332 2344455544444332   334588899999999999987755554  47888888887


Q ss_pred             HHHHh
Q psy16874        183 YEKLK  187 (227)
Q Consensus       183 ~~~~~  187 (227)
                      |.-+.
T Consensus       185 Y~~l~  189 (281)
T PF00693_consen  185 YHALV  189 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76664

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.42  E-value=0.00013  Score=51.48  Aligned_cols=24  Identities=42%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      |+|.|++|+|||++++.|++.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999998874

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.42  E-value=0.00024  Score=53.20  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |.++|++||||||++..++..+...+.++..+.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~   34 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLA   34 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            789999999999999999999988888876533

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.40  E-value=0.00033  Score=55.83  Aligned_cols=37  Identities=14%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+..++|.|++|+||||++..+++.....+.++..+.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~   73 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP   73 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence            4567999999999999999999998876666665544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK09183 transposase/IS protein; Provisional

Probab=97.39  E-value=0.00028  Score=57.76  Aligned_cols=37  Identities=30%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++..++|.|++|+|||+++..|+......|.++..+.
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~  137 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT  137 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            4567889999999999999999988777788876654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.39  E-value=0.00017  Score=55.35  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ..+.+++|.|++|+||||+++.+.+.+...
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            457899999999999999999999988775

>PRK06851 hypothetical protein; Provisional

Probab=97.37  E-value=0.00043  Score=59.24  Aligned_cols=34  Identities=21%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .++++|.|+||+||||+++.|.+.+...|+++..
T Consensus        30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~   63 (367)
T PRK06851         30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF   63 (367)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            4689999999999999999999999887887654

>PLN02748 tRNA dimethylallyltransferase

Probab=97.37  E-value=0.00012  Score=64.46  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      +++.+|+|.||+||||||++..|++.++...++++
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D   54 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD   54 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence            35679999999999999999999999986666654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.36  E-value=0.00017  Score=55.65  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+++-++.++|++||||||+.++|-.....
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p   54 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP   54 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence            356778999999999999999999876544

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.36  E-value=0.00014  Score=61.08  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      ++.|.|+|+||+||||+++.|++.++...+.+.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~   96 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVN   96 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEE
Confidence            345999999999999999999999988666543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.34  E-value=0.00017  Score=57.28  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      |+|.|+|.+||||||+++.+.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~   23 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN   23 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc
Confidence            58999999999999999888664

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.34  E-value=0.00043  Score=55.86  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..++|.||+|+|||+++..++..+...+.++.++.
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~   80 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP   80 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            457899999999999999999998887777776644

>KOG1532|consensus

Probab=97.33  E-value=0.0029  Score=51.59  Aligned_cols=33  Identities=33%  Similarity=0.443  Sum_probs=28.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .+|.+|++.|+.||||||++.+|..++....-+
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p   49 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP   49 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence            568899999999999999999999999776543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.00018  Score=60.67  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.||+||||||+.+.+|--..
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999986443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.32  E-value=0.00063  Score=59.08  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~   43 (227)
                      ++.+|+|.|++||||||++..|+..+. ..|.++..+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit  259 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT  259 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence            467899999999999999999998763 4566665533

>TIGR00101 ureG urease accessory protein UreG

Probab=97.32  E-value=0.00023  Score=56.02  Aligned_cols=27  Identities=30%  Similarity=0.188  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      |..|.|.|++||||||+++.+...+..
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~   27 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQ   27 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            567999999999999999999988764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF13173 AAA_14: AAA domain

Probab=97.32  E-value=0.00027  Score=51.42  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++++|.|+.|+||||+++.+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            46799999999999999999998775

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.31  E-value=0.00046  Score=54.15  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+++|.|++|+||||++..+.+.+...+..+..+.
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a   53 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA   53 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence            467899999999999999999999999887776654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.00086  Score=57.52  Aligned_cols=38  Identities=32%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|+|.||.||||||++..|+..+...+.++..+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt  241 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT  241 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            35789999999999999999999998877787876654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.30  E-value=0.00015  Score=53.04  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +++-+++|.|+.||||||+.+.|+..+..
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             cCCCEEEEEccCCCccccceeeecccccc
Confidence            45778999999999999999988876654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK06851 hypothetical protein; Provisional

Probab=97.30  E-value=0.00045  Score=59.09  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=34.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      .++++|.|+||+||||+++.+++.+..+|+.+...+-|
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~  251 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG  251 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46799999999999999999999999999999887654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.29  E-value=0.00014  Score=59.07  Aligned_cols=30  Identities=37%  Similarity=0.478  Sum_probs=26.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+++.+++|.||.||||||+.+.|+..+..
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            356889999999999999999999987764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.29  E-value=0.00023  Score=54.65  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+.+-+++|.|++||||||+.+.++--
T Consensus        22 v~~ge~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          22 VPAGEIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHHhc
Confidence            356778999999999999999999873

>COG4240 Predicted kinase [General function prediction only]

Probab=97.29  E-value=0.00049  Score=54.56  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=32.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEee
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVN   43 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~   43 (227)
                      ..+|.++.|+||-||||||++..|-..|...|. ++..+.
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS   86 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS   86 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence            356889999999999999999999999988874 555433

>TIGR00959 ffh signal recognition particle protein

Probab=97.28  E-value=0.00055  Score=59.90  Aligned_cols=37  Identities=35%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~   43 (227)
                      +|.+|.+.|++||||||.+..|+..+. ..|.++..+.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~  135 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA  135 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            477999999999999999999999986 4677776544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.26  E-value=0.00065  Score=54.28  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +++.++.|.|+|||||||++..++...-..+.++.++..
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~   59 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT   59 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            457899999999999999999999887667778877653

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=97.26  E-value=0.00066  Score=48.62  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=29.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |++.|.+|+||||++..|+..+...+.++..+.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id   34 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID   34 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            889999999999999999999988888886655

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.25  E-value=0.00015  Score=60.13  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      +|+|.||+|||||+++..|++.++...++++
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~D   31 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVD   31 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEec
Confidence            4899999999999999999999876656653

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.24  E-value=0.00028  Score=54.37  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      +++-+++|.|+.||||||+.+.+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999998874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.24  E-value=0.00024  Score=55.21  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+..++|.|++||||||+.+.|...+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            467899999999999999999988765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.24  E-value=0.00029  Score=54.80  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999886543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.24  E-value=0.0006  Score=55.87  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.++.|.|+||+||||+|-.++...-..|-++.++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis   71 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT   71 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            5678999999999999999998877655687886644

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.24  E-value=0.00069  Score=52.31  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.-++|.|++|+|||.++..++..+-..|++|.++.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~   82 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT   82 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence            4567999999999999999999998888999988876

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.24  E-value=0.00028  Score=55.98  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999997654

>PRK06893 DNA replication initiation factor; Validated

Probab=97.24  E-value=0.00057  Score=54.91  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.++|.|++|+|||+++..++..+...+.++.++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~   74 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP   74 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence            46899999999999999999999877777776544

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.22  E-value=0.0013  Score=50.28  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.|+|++||||||++..++..   .+.++.++.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a   31 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA   31 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence            4789999999999999999876   344565543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.22  E-value=0.00027  Score=57.86  Aligned_cols=27  Identities=33%  Similarity=0.523  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.+++|.|++||||||+++.+...+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            457999999999999999999988764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.22  E-value=0.0003  Score=55.66  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.22  E-value=0.00071  Score=54.12  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..++|.|++|+|||+++..++......+.++..+.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~   77 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD   77 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            457899999999999999999998877777766654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00027  Score=59.97  Aligned_cols=26  Identities=27%  Similarity=0.545  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-++++.||+||||||+.+.|+--
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999863

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.22  E-value=0.00029  Score=50.14  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.+||||||+.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.21  E-value=0.00016  Score=52.37  Aligned_cols=24  Identities=42%  Similarity=0.515  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.++|+||.||||+++.|++.++.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            789999999999999999998765

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.21  E-value=0.00031  Score=53.10  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++.++|.|++|+||||+++.|...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            478999999999999999988764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.21  E-value=0.00033  Score=55.38  Aligned_cols=28  Identities=32%  Similarity=0.530  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999987654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.21  E-value=0.00059  Score=52.61  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.|+||+||||++..++...-..|.++.++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            789999999999999999887767788887754

A related protein is found in archaea.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.21  E-value=0.00051  Score=56.49  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      .+..|+|+|++||||||+.+.|...++.....+..+..+
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~  164 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDP  164 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESS
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEeccc
Confidence            367899999999999999999999888764455555544

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.21  E-value=0.00032  Score=55.74  Aligned_cols=28  Identities=29%  Similarity=0.360  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4577899999999999999999987654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK06526 transposase; Provisional

Probab=97.21  E-value=0.00042  Score=56.55  Aligned_cols=34  Identities=26%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +..++|.||+|+|||+++..|+..+...|+++..
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f  131 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF  131 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence            4579999999999999999999988777777644

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.20  E-value=0.00032  Score=54.09  Aligned_cols=28  Identities=36%  Similarity=0.382  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+.+.|+..+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4577999999999999999999987654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.20  E-value=0.00032  Score=62.87  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ...+.+++||+||||||.++.|++.++.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3568999999999999999999999865

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=97.20  E-value=0.00065  Score=62.02  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=34.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ..++|.|+|.+||||||+++.|...|..+|++|..++.
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh   46 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH   46 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence            35689999999999999999999999999999987664

>PRK13764 ATPase; Provisional

Probab=97.20  E-value=0.00054  Score=62.23  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ...|+|+|++||||||+++.|...+...+..+..+..|
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp  294 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP  294 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence            45699999999999999999999998766555444433

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.20  E-value=0.00065  Score=52.40  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++++|+|..||||||+.+.|.+ ....+.++..+.
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~   34 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIV   34 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEE
Confidence            4689999999999999999998 666788887754

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK08181 transposase; Validated

Probab=97.20  E-value=0.0013  Score=54.04  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..++|.|++|+|||.++..++..+...|.+|..+.
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~  141 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR  141 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence            456999999999999999999998888888887655

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.19  E-value=0.00048  Score=54.43  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +.+++|+|.|+.||||||+.+.+.+.+.. +..+..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v   54 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAV   54 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEE
Confidence            35778999999999999999999988764 335444

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.19  E-value=0.00034  Score=55.40  Aligned_cols=28  Identities=36%  Similarity=0.509  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-++.|.|+.||||||+++.|+..+.
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999987653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.19  E-value=0.00033  Score=62.87  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.+++++.||||+||||+++.|++.+...
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            45799999999999999999999988764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.18  E-value=0.00036  Score=55.12  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            457789999999999999999999754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.18  E-value=0.00036  Score=56.17  Aligned_cols=28  Identities=32%  Similarity=0.477  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4677999999999999999999987553

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.17  E-value=0.00037  Score=55.45  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999997554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>KOG1533|consensus

Probab=97.17  E-value=0.00034  Score=55.56  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=28.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      -+|+|||||||||-|....+-+...|=++..+.
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVN   37 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVN   37 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEe
Confidence            578999999999999999999988877766544

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.17  E-value=0.00036  Score=54.93  Aligned_cols=28  Identities=36%  Similarity=0.483  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999987543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.17  E-value=0.00046  Score=57.08  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=28.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ....+|.|.|+|||||||+++.|...+... ..+..+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI  137 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI  137 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence            356789999999999999999999988654 244443

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.17  E-value=0.00039  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~   31 (227)
                      |+|.|.+||||||+++.|...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            899999999999999988864

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.17  E-value=0.00038  Score=55.43  Aligned_cols=28  Identities=29%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.16  E-value=0.00039  Score=55.04  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987554

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.16  E-value=0.00037  Score=55.52  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.15  E-value=0.0004  Score=55.29  Aligned_cols=28  Identities=32%  Similarity=0.567  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4578999999999999999999987554

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd04163 Era Era subfamily

Probab=97.15  E-value=0.00044  Score=51.53  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|++.|++||||||+++.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.15  E-value=0.00039  Score=54.69  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+-.+.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.15  E-value=0.00036  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++ +++|.|+.||||||+++.|+..+.
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence            46 899999999999999999987543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.15  E-value=0.00041  Score=54.90  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999997654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.15  E-value=0.00041  Score=55.52  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            457799999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.15  E-value=0.00036  Score=55.25  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467799999999999999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.15  E-value=0.00041  Score=54.88  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+.
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999987554

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.00028  Score=64.20  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      .+|.++++.||||+|||++++.+|+.++...+..
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            4688999999999999999999999999866544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.14  E-value=0.00039  Score=55.55  Aligned_cols=28  Identities=29%  Similarity=0.451  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|+..+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4677999999999999999999987653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.14  E-value=0.00038  Score=56.02  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4577899999999999999999987553

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.14  E-value=0.00037  Score=57.12  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKL   28 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L   28 (227)
                      .|.+.+++|+|++||||||++..+
T Consensus        18 ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          18 IPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             ccCCcEEEEECCCCCchHHHHHHH
Confidence            366889999999999999999754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.14  E-value=0.002  Score=54.08  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      .+.-++|.|++|+|||.++..++..+...|++|..+..|
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~  193 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP  193 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence            345699999999999999999999999889998877643

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.14  E-value=0.00069  Score=55.67  Aligned_cols=38  Identities=29%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ..+|+|.|++||||||+...+...+...+..+..+..|
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp  117 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP  117 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC
Confidence            34799999999999999998888776544445555444

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.13  E-value=0.00041  Score=56.04  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4577999999999999999999987553

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.12  E-value=0.00042  Score=51.29  Aligned_cols=21  Identities=43%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|.|.|++|||||||++.|..
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            389999999999999988876

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.12  E-value=0.00043  Score=55.84  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4577999999999999999999987553

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.12  E-value=0.00044  Score=55.62  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.12  E-value=0.00044  Score=54.91  Aligned_cols=28  Identities=25%  Similarity=0.118  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+.+.|+..+.
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            5678999999999999999999997654

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.12  E-value=0.00048  Score=53.06  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-++.|.|+.||||||+++.|+..+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999986543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.12  E-value=0.0036  Score=51.23  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=33.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.+++|.|+||||||+++..........|-+|..+.
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs   58 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS   58 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence            56789999999999999999999988888888887754

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.12  E-value=0.00047  Score=52.82  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.11  E-value=0.00048  Score=52.47  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.11  E-value=0.00046  Score=55.44  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++-+++|.|+.||||||+++.|+..+..
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45779999999999999999999986653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.11  E-value=0.0028  Score=50.62  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      +++.+++|+|+||||||+++..+....-.. |-+|.++.
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs   55 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS   55 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence            457789999999999999999877655444 77887755

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.11  E-value=0.0005  Score=52.68  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+.+.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4577899999999999999999987654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.10  E-value=0.00046  Score=53.84  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .++-++.|.|++||||||+.+.|+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            35778999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.10  E-value=0.00048  Score=55.04  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5688999999999999999999997654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.10  E-value=0.00047  Score=55.66  Aligned_cols=28  Identities=29%  Similarity=0.438  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2004|consensus

Probab=97.10  E-value=0.00028  Score=64.15  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .+|++++|.||||.|||++++.+|+.|+...+.
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR  468 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFR  468 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence            468999999999999999999999999876543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.10  E-value=0.00049  Score=54.26  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4577899999999999999999987543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.10  E-value=0.001  Score=53.59  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      .++.+++|.|+||+||||++..++.++-.. +.++.++.
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s   49 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS   49 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence            457799999999999999999998887766 88887755

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.10  E-value=0.00075  Score=57.81  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++.+|+|+|+.||||||++..|...+.
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999998875

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.10  E-value=0.0005  Score=52.91  Aligned_cols=28  Identities=32%  Similarity=0.360  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|++||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4577899999999999999999987543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.10  E-value=0.00049  Score=55.07  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+++.|+..+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4577899999999999999999987543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.09  E-value=0.0005  Score=54.76  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3577899999999999999999987543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.09  E-value=0.00047  Score=55.70  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|+.||||||+++.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.09  E-value=0.00053  Score=55.73  Aligned_cols=28  Identities=32%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..+-+++|.|+.||||||+++.|+..+.
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4578999999999999999999987654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.09  E-value=0.00051  Score=53.66  Aligned_cols=28  Identities=14%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999988654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.09  E-value=0.00067  Score=56.33  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      +.-++|.|+||+||||+++.+++.+...+.
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            346999999999999999999998876544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK05973 replicative DNA helicase; Provisional

Probab=97.08  E-value=0.0012  Score=53.33  Aligned_cols=38  Identities=18%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.+++|.|.||+||||++-.++...-..|.++.++.
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS   99 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT   99 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            45779999999999999999999887766688887644

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.08  E-value=0.0005  Score=55.11  Aligned_cols=29  Identities=34%  Similarity=0.469  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|-+++|.|+.||||||+++.|+..+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   52 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV   52 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45789999999999999999999976643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.08  E-value=0.00051  Score=56.11  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999997654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.07  E-value=0.00052  Score=55.26  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4577999999999999999999987553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.07  E-value=0.0013  Score=52.96  Aligned_cols=38  Identities=26%  Similarity=0.520  Sum_probs=29.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|++||||||++..+...+-..+..+.++.
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~   59 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS   59 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            45679999999999999998666655545576776654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.06  E-value=0.00054  Score=50.95  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4577899999999999999999987653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.06  E-value=0.00041  Score=56.92  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..|.++|++|+||||+++.|++.++.
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~   47 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDR   47 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            456789999999999999999987643

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.06  E-value=0.00056  Score=54.01  Aligned_cols=28  Identities=32%  Similarity=0.450  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999987553

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.06  E-value=0.00058  Score=52.69  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|++||||||+++.|+..+.
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.06  E-value=0.0012  Score=53.23  Aligned_cols=35  Identities=34%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +.+.-++|.|++||||||++..|-..+.... ....
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f-~~I~   45 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKF-DHIF   45 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcccC-CEEE
Confidence            3466799999999999999999988776644 4444

This is thought to be an ATPase involved in viral DNA packaging [].

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.06  E-value=0.00056  Score=54.50  Aligned_cols=29  Identities=21%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.|-+|+|.|++||||||+.+.|....+.
T Consensus        28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~   56 (258)
T COG3638          28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDP   56 (258)
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence            56778999999999999999888874443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.06  E-value=0.00055  Score=54.80  Aligned_cols=28  Identities=32%  Similarity=0.336  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4577999999999999999999987653

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.06  E-value=0.00058  Score=57.10  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.||||+||||++..+++.++.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456899999999999999999998864

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.06  E-value=0.00057  Score=51.92  Aligned_cols=28  Identities=29%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.06  E-value=0.00053  Score=55.05  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999997654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.06  E-value=0.00057  Score=53.63  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467799999999999999999998754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.06  E-value=0.00055  Score=55.58  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987553

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.06  E-value=0.00054  Score=55.39  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999997653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.05  E-value=0.00066  Score=58.29  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-C-CCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-N-IPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~-~~~~~~   42 (227)
                      .++.+|+|.||+|+||||++..|+..+... | ..+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li  173 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL  173 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            457799999999999999999999987533 4 355443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.05  E-value=0.00055  Score=54.79  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.|-++.|.|+.||||||+.+.|+..+.
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4577899999999999999999987654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.05  E-value=0.00058  Score=53.72  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|+..+.
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            4678999999999999999999987654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.05  E-value=0.00057  Score=55.25  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+++.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            457789999999999999999998754

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.04  E-value=0.00058  Score=54.33  Aligned_cols=28  Identities=29%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4677999999999999999999987543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.04  E-value=0.00061  Score=54.51  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|+|++||||||+++.|+..+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            4577899999999999999999997664

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00052  Score=55.37  Aligned_cols=30  Identities=37%  Similarity=0.523  Sum_probs=25.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+.+-++++.|++||||||..+++-.-+..
T Consensus        24 I~~gef~vliGpSGsGKTTtLkMINrLiep   53 (309)
T COG1125          24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP   53 (309)
T ss_pred             ecCCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence            356889999999999999999888876554

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.04  E-value=0.00059  Score=54.74  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.00057  Score=54.66  Aligned_cols=29  Identities=31%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|-.+.|.|.+||||||+++.|+-....
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            35778999999999999999999875544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.04  E-value=0.00056  Score=55.68  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            457789999999999999999999754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.00059  Score=53.71  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++..+-+|+||+||||||+.+.|-...+.
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmndl   59 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMNDL   59 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhccc
Confidence            55678899999999999999888775543

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.04  E-value=0.0014  Score=52.85  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|+|||||||++..+....-..|-++.++.
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            46789999999999999999887665435677876644

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.04  E-value=0.00054  Score=53.92  Aligned_cols=28  Identities=25%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+++.|+..+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4577999999999999999999988654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.04  E-value=0.00056  Score=55.69  Aligned_cols=28  Identities=29%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999998654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.03  E-value=0.0029  Score=54.21  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .+|--+.|+|++|+||||++..|++.+...
T Consensus       131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~  160 (380)
T PRK12608        131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN  160 (380)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            356678999999999999999999988765

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.03  E-value=0.0006  Score=52.70  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.03  E-value=0.0006  Score=55.09  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4578999999999999999999997654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.03  E-value=0.00065  Score=51.97  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-++.|.|+.||||||+.+.|+-.+.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4577999999999999999999988654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.03  E-value=0.00061  Score=54.21  Aligned_cols=28  Identities=21%  Similarity=0.243  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|+-.+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4577899999999999999999987543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.03  E-value=0.00062  Score=54.08  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3577899999999999999999987554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.02  E-value=0.00095  Score=56.95  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNFP   45 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~~   45 (227)
                      +.+|+|+|++||||||++..|...+... ...+..+..|
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp  160 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP  160 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence            4679999999999999999998877643 2334444433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.02  E-value=0.00061  Score=55.34  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4577899999999999999999997653

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.02  E-value=0.00066  Score=53.39  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+.+++|+||.||||||+++.++-..
T Consensus        24 ~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          24 KKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHH
Confidence            35789999999999999999998644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.02  E-value=0.00062  Score=55.72  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999997654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.01  E-value=0.016  Score=49.99  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH--hCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN--KNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~   43 (227)
                      ++++|++.||.|+||||-...||.++.  ....+|..+.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT  240 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT  240 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence            378999999999999999999999887  3455565543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.01  E-value=0.00061  Score=55.74  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4577899999999999999999997653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.01  E-value=0.00062  Score=55.39  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4577999999999999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.01  E-value=0.00065  Score=54.58  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4578999999999999999999987654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.01  E-value=0.005  Score=54.30  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      -+|.|+||.||||||..-.+-+.++....++..+..|
T Consensus       259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP  295 (500)
T COG2804         259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP  295 (500)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence            4699999999999999999888888777666555544

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.01  E-value=0.00065  Score=54.58  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-++.|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4577899999999999999999987664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.01  E-value=0.00066  Score=54.11  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999986543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.00  E-value=0.00068  Score=53.38  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++-+++|.|+.||||||+.+.|+..+..
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46779999999999999999999876543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.00  E-value=0.00065  Score=55.51  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4577999999999999999999998653

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.00  E-value=0.0005  Score=59.68  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .|+-|++.||||+|||++++.++..++..
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~  192 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT  192 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence            35568999999999999999999987654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.00  E-value=0.00063  Score=55.59  Aligned_cols=28  Identities=32%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999998654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.00  E-value=0.0006  Score=55.38  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         27 FKNQITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4577899999999999999999997543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.00  E-value=0.00066  Score=54.59  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          25 PAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4577999999999999999999987654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.00  E-value=0.00068  Score=54.82  Aligned_cols=28  Identities=36%  Similarity=0.562  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577899999999999999999987654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.00  E-value=0.00066  Score=54.32  Aligned_cols=27  Identities=33%  Similarity=0.464  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++-+++|.|+.||||||+++.|+-.+
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            457789999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.99  E-value=0.00067  Score=55.46  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|+..+.
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4577899999999999999999997654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.99  E-value=0.00069  Score=53.56  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+++.|+..+.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999987653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.99  E-value=0.00068  Score=54.73  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999997653

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.99  E-value=0.00068  Score=54.60  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4577999999999999999999997654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.98  E-value=0.00068  Score=55.16  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987553

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10646 ADP-binding protein; Provisional

Probab=96.98  E-value=0.0008  Score=50.43  Aligned_cols=30  Identities=23%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.+.+|.+.|.-||||||+++.|++.++..
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            456789999999999999999999999753

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.98  E-value=0.0007  Score=54.92  Aligned_cols=28  Identities=21%  Similarity=0.320  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999987653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.98  E-value=0.00075  Score=52.83  Aligned_cols=28  Identities=29%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999887553

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.98  E-value=0.00072  Score=55.27  Aligned_cols=29  Identities=28%  Similarity=0.327  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|-++.|.|+.||||||+++.|+..+..
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            46779999999999999999999987653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.98  E-value=0.0012  Score=55.15  Aligned_cols=27  Identities=37%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ...|+|+|++||||||+++.|...+..
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            457899999999999999999988754

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.98  E-value=0.00069  Score=54.57  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-++.|.|+.||||||+++.|+-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4577999999999999999999998654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.98  E-value=0.0006  Score=56.82  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=27.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      ..+++|+|.||.|||||.++-.|++.. ..-++++
T Consensus         2 ~~~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaD   35 (300)
T PRK14729          2 KENKIVFIFGPTAVGKSNILFHFPKGK-AEIINVD   35 (300)
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-CcEEecc
Confidence            345699999999999999999999983 3344443

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.97  E-value=0.0007  Score=54.36  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..|-+++|.|+.||||||+++.|+..+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999987654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.97  E-value=0.00072  Score=55.64  Aligned_cols=28  Identities=32%  Similarity=0.539  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.|++||||||+++.|+-.+.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3577899999999999999999987654

>PRK08116 hypothetical protein; Validated

Probab=96.97  E-value=0.0036  Score=51.54  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.-++|.|++|+|||.++..+++.+...+.++..+.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~  149 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN  149 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            345899999999999999999999987788876655

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.97  E-value=0.0007  Score=55.80  Aligned_cols=28  Identities=32%  Similarity=0.599  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.96  E-value=0.00074  Score=54.75  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|+|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            457789999999999999999998754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.96  E-value=0.0014  Score=57.47  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH--hCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN--KNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~--~~~~~~~~~~   43 (227)
                      +.+|+|.||+|+||||.+..|+..+.  ..+.+|..+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~  258 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT  258 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            56899999999999999999999886  3467777655

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.96  E-value=0.0017  Score=51.92  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.+++|.|+|||||||++..++...-..+-++.++.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is   55 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT   55 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            45789999999999999999987765444566666654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.96  E-value=0.00058  Score=58.71  Aligned_cols=28  Identities=25%  Similarity=0.205  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      |+-++|.||||+||||+++.+++.++..
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~  183 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNAT  183 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence            5568999999999999999999987653

Many proteins may score above the trusted cutoff because an internal

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.96  E-value=0.00075  Score=54.91  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+++.|+-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            457789999999999999999999865

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.95  E-value=0.00076  Score=54.86  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            457789999999999999999998753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.95  E-value=0.00077  Score=54.89  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4578999999999999999999997654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.95  E-value=0.00077  Score=54.79  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|+-.+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            4577899999999999999999997653

>TIGR02012 tigrfam_recA protein RecA

Probab=96.95  E-value=0.0017  Score=54.64  Aligned_cols=38  Identities=34%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|++||||||+|-.+.......+-.+.++.
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId   90 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID   90 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence            56789999999999999999988877766677776654

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PLN03025 replication factor C subunit; Provisional

Probab=96.95  E-value=0.0024  Score=53.86  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      +.++|.||||+||||++..+++.+...+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLGPN   62 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            3478999999999999999999985443

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.95  E-value=0.00077  Score=55.42  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            457789999999999999999998754

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=96.95  E-value=0.0018  Score=48.68  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHH-HHHHHhhC--------CeEEEcCC-CCHHHHHHHH
Q psy16874        142 GLPKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAE-NYEKLKDN--------IWIDIDAD-KDIDTLGLIV  207 (227)
Q Consensus       142 ~~~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~Id~~-~s~~~v~~~I  207 (227)
                      -+|..++.|||++++++..+|-.+    .+....-.+.++.+.. -+.+..+.        ..++||++ .++++|.+.|
T Consensus        76 VfPdA~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~i  155 (157)
T PF02224_consen   76 VFPDADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKI  155 (157)
T ss_dssp             CCTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHH
T ss_pred             EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHH
Confidence            356778999999999999887632    1111111223333322 22232221        67889977 9999998887


Q ss_pred             HH
Q psy16874        208 KD  209 (227)
Q Consensus       208 ~~  209 (227)
                      .+
T Consensus       156 l~  157 (157)
T PF02224_consen  156 LE  157 (157)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.00076  Score=54.67  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.||.||||||+.+.+.--+.
T Consensus        28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          28 EKGEITALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            5678999999999999999988877544

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.95  E-value=0.0017  Score=52.23  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=30.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|++||||||++..+....-..+-++.++.
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~   60 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT   60 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence            45779999999999999999999765544677776654

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.95  E-value=0.0015  Score=53.00  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+++.|++|+|||+++..++..+...+.++..+.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it  134 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT  134 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            36899999999999999999999988888887664

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.95  E-value=0.00069  Score=55.59  Aligned_cols=28  Identities=32%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4577999999999999999999987543

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.94  E-value=0.00079  Score=54.87  Aligned_cols=28  Identities=18%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-++.|.|+.||||||+++.|+..+.
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987553

>KOG1970|consensus

Probab=96.94  E-value=0.00069  Score=59.95  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=27.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      +..+..|+||+||||||..+.|++.++...+
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            4568999999999999999999999987544

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.94  E-value=0.00075  Score=57.19  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=24.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.||||+||||+++.+++.++.
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            456899999999999999999999865

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.94  E-value=0.0016  Score=56.26  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh----CCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK----NNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~----~~~~~~~~~   43 (227)
                      +|.+|++.|+.|+||||.+..|+..+..    .+.+|..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit  213 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT  213 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence            4679999999999999999999998864    355665543

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.94  E-value=0.0014  Score=54.82  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++|.+|.|.|+.|+||||-+..|+..|...|.+|...
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla  173 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA  173 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence            4588999999999999999999999999999998653

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.94  E-value=0.0006  Score=59.27  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .|+-|.+.||||+||||+++.++..++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~  206 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTAT  206 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            45678999999999999999999987543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.94  E-value=0.00082  Score=52.54  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|.|+.||||||+.+.|+..+
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            457789999999999999999998755

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.94  E-value=0.00084  Score=52.92  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|.|+.||||||+++.|+..+.
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4577899999999999999999987543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.94  E-value=0.0008  Score=54.65  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+++.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            457789999999999999999998754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.93  E-value=0.00079  Score=53.35  Aligned_cols=28  Identities=18%  Similarity=0.423  Sum_probs=24.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4578999999999999999999987654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.93  E-value=0.00082  Score=53.41  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-++.|.|++||||||+.+.|+-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4577999999999999999999987653

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.93  E-value=0.00083  Score=53.61  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987654

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.93  E-value=0.00082  Score=55.25  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=24.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+-.+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         43 PEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4578999999999999999999998664

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.00094  Score=59.36  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      +.|.++++.||||+||||+++.|.+++...-+
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti   98 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI   98 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhh
Confidence            34667779999999999999999998876443

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.93  E-value=0.0008  Score=55.37  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         37 PRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4577899999999999999999997653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.92  E-value=0.00084  Score=54.58  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4577999999999999999999988654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.92  E-value=0.00085  Score=53.26  Aligned_cols=28  Identities=29%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+..+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987554

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.92  E-value=0.0013  Score=53.77  Aligned_cols=39  Identities=33%  Similarity=0.392  Sum_probs=34.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ++.-++|.|+||+|||.++..++..+-..|++|..+..|
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~  142 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP  142 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            456799999999999999999999999779999887744

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.92  E-value=0.00094  Score=49.55  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.+.+|++.|.=||||||+++.+++.|+-
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            46789999999999999999999999874

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.92  E-value=0.0015  Score=55.12  Aligned_cols=26  Identities=35%  Similarity=0.355  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +..|+|+|++||||||+++.|...+.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999998874

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.92  E-value=0.00086  Score=53.57  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.|+.||||||+++.|+..+.
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4577999999999999999999987654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.92  E-value=0.00078  Score=55.48  Aligned_cols=28  Identities=21%  Similarity=0.243  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4577899999999999999999987654

>PRK08727 hypothetical protein; Validated

Probab=96.92  E-value=0.0017  Score=52.28  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..++|.|++|+|||+++..++..+...+.++.++.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~   76 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP   76 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            35999999999999999999998888787776654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.92  E-value=0.00081  Score=55.64  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567899999999999999999987553

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.91  E-value=0.00082  Score=54.96  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999997654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.91  E-value=0.00085  Score=55.22  Aligned_cols=28  Identities=25%  Similarity=0.385  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999987654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.91  E-value=0.00085  Score=54.53  Aligned_cols=26  Identities=19%  Similarity=0.264  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|+.||||||+++.|+-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         27 EEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            45778999999999999999999864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.91  E-value=0.00085  Score=55.23  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999997653

>KOG1969|consensus

Probab=96.91  E-value=0.0023  Score=58.49  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++..++||||.||||+|..+|++-   |++|..+.
T Consensus       323 RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEIN  358 (877)
T KOG1969|consen  323 RPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEIN  358 (877)
T ss_pred             CCccceEEeecCCCCChhHHHHHHHHhc---CceEEEec
Confidence            4556789999999999999999999985   55665544

>cd04155 Arl3 Arl3 subfamily

Probab=96.91  E-value=0.00096  Score=50.61  Aligned_cols=25  Identities=36%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +...|+|.|++||||||+.+.|...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            3456999999999999999988763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.91  E-value=0.00088  Score=54.55  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            457789999999999999999998643

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.91  E-value=0.00086  Score=55.04  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577899999999999999999987654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=96.91  E-value=0.013  Score=44.80  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +|+|+|-.+|||.|+++.|.+.++.
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~   25 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGA   25 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhcc
Confidence            5899999999999999999888864

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.91  E-value=0.00092  Score=52.51  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|++||||||+.+.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.91  E-value=0.00087  Score=54.47  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|+.||||||+.+.|+..
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            45778999999999999999999864

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.91  E-value=0.0009  Score=52.52  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ..+ +++|.|+.||||||+.+.|.-.+
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            345 89999999999999999997554

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.90  E-value=0.0088  Score=55.80  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCC-CeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNI-PSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~-~~~~   41 (227)
                      ++.+|.|.||.||||||.+..|+..+. ..|- ++..
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~l  220 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLAL  220 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEE
Confidence            467999999999999999999998884 3443 4444

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.90  E-value=0.00085  Score=55.36  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|+|+.||||||+++.|+..+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4577999999999999999999987654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00086  Score=54.06  Aligned_cols=30  Identities=30%  Similarity=0.394  Sum_probs=24.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .++-.++|.|++||||||+.+.|.--+...
T Consensus        28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~   57 (235)
T COG1122          28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPT   57 (235)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence            457789999999999999998888765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1e2d_A	215	Human Thymidylate Kinase Complexed With Thymidine M		2e-39
1e98_A	215	Wild Type Human Thymidylate Kinase Complexed With A		2e-39
2xx3_A	232	Human Thymidylate Kinase Complexed With Thymidine B		2e-39
1nmy_A	209	Crystal Structure Of Human Thymidylate Kinase With		2e-39
1e9c_A	215	Mutant Human Thymidylate Kinase Complexed With Tmp		3e-39
1e9f_A	217	Mutant Human Thymidylate Kinase Complexed With Tmp		2e-36
2wwf_A	212	Plasmodium Falciparum Thymidylate Kinase In Complex		2e-35
2tmk_A	216	Yeast Thymidylate Kinase Complexed With 3'-Azido-3'		6e-32
2v54_A	204	Crystal Structure Of Vaccinia Virus Thymidylate Kin		1e-31
2pbr_A	195	Crystal Structure Of Thymidylate Kinase (Aq_969) Fr		1e-10
3hjn_A	197	Crystal Structure Of Thymidylate Kinase In Complex		6e-04

>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Monophosphate, Adenosine Diphosphate And A Magnesium-Ion Length = 215

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170

>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp And Adp Length = 215

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170

>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl Phosphonate Monophosphate And Adp Length = 232

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 25  RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 84
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 85  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 127
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 128 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 187

>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp And Appnhp Length = 209

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 2   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 62  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 104
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 105 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 164

>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Appnp Length = 215

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 17/180 (9%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 8   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVA++ 
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAYTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 170

>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp Length = 217

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 19/182 (10%)
Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG D +GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 8   RGALIVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 67
Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE+ P + + + QG+TL +                 DRY+FSGVAF+ 
Sbjct: 68  DHSVHLLFSANRWEQVPLIKEKLSQGVTLVV-----------------DRYAFSGVAFTG 110
Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGD-ERYEQTDFQRKVAENYE 184
           AKE   + WC QP+ GLPKPD VL  +L   +A +R +  G+ ERYE   FQ +    + 
Sbjct: 111 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGRARGELERYENGAFQERALRCFH 170
Query: 185 KL 186
           +L
Sbjct: 171 QL 172

>pdb|2WWF|A Chain A, Plasmodium Falciparum Thymidylate Kinase In Complex With Tmp And Adp Length = 212

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 17/184 (9%)
Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M     +G FIVFEG DRSGK+TQ+K LV+YL  NN+  + + FP+R    G II +YL+
Sbjct: 3   MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 62
Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
            +  + ++  HLLFSANRWE    +  L+ +GI +                   DRY++S
Sbjct: 63  MENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWV-----------------VCDRYAYS 105
Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVA+S+    ++ +WC  P++GL KPD V    +     Q R  +G+E YE+ + Q+K+ 
Sbjct: 106 GVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165
Query: 181 ENYE 184
           E Y+
Sbjct: 166 ETYK 169

>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'- Deoxythymidine Monophosphate (Azt-Mp) Length = 216

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 102/186 (54%), Gaps = 24/186 (12%)
Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRK-KI 63
           + RG  I+ EG DR+GKTTQ   L   L  N    + + FP+R+   G +I+EYL     
Sbjct: 2   MGRGKLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKFPERSTRIGGLINEYLTDDSF 58
Query: 64  ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVA 123
           +L DQA HLLFSANRWE    + K + +G             KN+      DRY +SGVA
Sbjct: 59  QLSDQAIHLLFSANRWEIVDKIKKDLLEG-------------KNI----VMDRYVYSGVA 101
Query: 124 FSAAK--EGMDISWCFQPEKGLPKPDAVLLFKLNE-EALQRRKGFGDERYEQTDFQRKVA 180
           +SAAK   GMD+ WC QP+ GL KPD  L     + +    + GFGDERYE   FQ KV 
Sbjct: 102 YSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVK 161
Query: 181 ENYEKL 186
           + + KL
Sbjct: 162 QTFMKL 167

>pdb|2V54|A Chain A, Crystal Structure Of Vaccinia Virus Thymidylate Kinase Bound To Tdp Length = 204

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 22/182 (12%)
Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE 64
           + RGA IVFEG D+SGKTTQ   +++ +  N I  +++NFP R+  TG +ID+YL +K  
Sbjct: 1   MSRGALIVFEGLDKSGKTTQCMNIMESIPANTI--KYLNFPQRSTVTGKMIDDYLTRKKT 58
Query: 65  LPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAF 124
             D   +LLF ANRWE    + + +EQGITL +                 DRY+FSGVA+
Sbjct: 59  YNDHIVNLLFCANRWEFASFIQEQLEQGITLIV-----------------DRYAFSGVAY 101
Query: 125 SAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYE 184
           +AAK G  ++     E GLPKPD V+  +   + + R    G+E YE   FQ+KV + Y+
Sbjct: 102 AAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYK 158
Query: 185 KL 186
           K+
Sbjct: 159 KM 160

>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From Aquifex Aeolicus Vf5 Length = 195

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
            I FEG D SGKTTQAKKL +YL +          P  T   G ++ E L  + EL ++ 
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGT-KVGEVLREILLTE-ELDERT 59
Query: 70  AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
             LLF A+R       +KLIE+ I  ++           D+    DR+  S +A+    +
Sbjct: 60  ELLLFEASR-------SKLIEEKIIPDLKR---------DKVVILDRFVLSTIAYQGYGK 103
Query: 130 GMDISWCFQ----PEKGLPKPDAVLLFKLNEE-ALQRRKGFGDERYEQTDFQRKVAENYE 184
           G+D+ +         +G+ KPD  LL  +  + AL+R K     R+E  +F  KV + + 
Sbjct: 104 GLDVEFIKNLNEFATRGV-KPDITLLLDIPVDIALRRLK--EKNRFENKEFLEKVRKGFL 160
Query: 185 KL 186
           +L
Sbjct: 161 EL 162

>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With Dtdp And Adp From Thermotoga Maritima Length = 197

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
           FI FEG D SGK+TQ + L  YL K          P  T  TG  I + L ++ E+  +A
Sbjct: 2   FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGT-ETGEKIRKILLEE-EVTPKA 59
Query: 70  AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA--- 126
              LF A+R      + + + +G  + +                 DRY+ S VA+     
Sbjct: 60  ELFLFLASRNLLVTEIKQYLSEGYAVLL-----------------DRYTDSSVAYQGFGR 102
Query: 127 --AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY 183
              KE ++    F  + GL  PD      ++ E   +RKG  + R+E+ +F  +V E Y
Sbjct: 103 NLGKEIVEELNDFATD-GLI-PDLTFYIDVDVETALKRKGELN-RFEKREFLERVREGY 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	3e-65
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	1e-63
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	3e-63
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	1e-54
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	4e-48
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	2e-31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	1e-23
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	2e-23
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	3e-23
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	6e-23
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	2e-22
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	1e-21
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	8e-21
2ccj_A	205	DTMP kinase, thymidylate kinase; transferase, nucl	2e-20
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	7e-20
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	1e-04

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Length = 215

 Score =  200 bits (511), Expect = 3e-65
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 22/227 (9%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           MA++  RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+
Sbjct: 4   MAAR--RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQ 61

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
           KK ++ D + HLLFSANRWE+ P + + + QG+TL ++                DRY+FS
Sbjct: 62  KKSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTL-VV----------------DRYAFS 104

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVAF+ AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +  
Sbjct: 105 GVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERAL 164

Query: 181 ENYEKLKD---NIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
             + +L       W  +DA K I+ +   ++ +  D I  +   PL 
Sbjct: 165 RCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG 211

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Length = 212

 Score =  195 bits (499), Expect = 1e-63
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 22/228 (9%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M     +G FIVFEG DRSGK+TQ+K LV+YL  NN+  + + FP+R    G II +YL+
Sbjct: 3   MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK 62

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
            +  + ++  HLLFSANRWE    +  L+ +GI + +                 DRY++S
Sbjct: 63  MENSMSNETIHLLFSANRWEHMNEIKSLLLKGIWV-VC----------------DRYAYS 105

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVA 180
           GVA+S+    ++ +WC  P++GL KPD V    +     Q R  +G+E YE+ + Q+K+ 
Sbjct: 106 GVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165

Query: 181 ENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLESNK 227
           E Y+    ++ WI+IDA + I+     + + ++  + K +  P E N 
Sbjct: 166 ETYKHFAHEDYWINIDATRKIED----IHNDIVKEVTKIKVEPEEFNF 209

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Length = 204

 Score =  194 bits (495), Expect = 3e-63
 Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 25/213 (11%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IVFEG D+SGKTTQ   +++ +  N I   ++NFP R+  TG +ID+YL +K    
Sbjct: 3   RGALIVFEGLDKSGKTTQCMNIMESIPANTIK--YLNFPQRSTVTGKMIDDYLTRKKTYN 60

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D   +LLF ANRWE    + + +EQGITL I+                DRY+FSGVA++A
Sbjct: 61  DHIVNLLFCANRWEFASFIQEQLEQGITL-IV----------------DRYAFSGVAYAA 103

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AK G  ++     E GLPKPD V+  +   + + R    G+E YE   FQ+KV + Y+K+
Sbjct: 104 AK-GASMTLSKSYESGLPKPDLVIFLESGSKEINRN--VGEEIYEDVTFQQKVLQEYKKM 160

Query: 187 ---KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
               D  W  I ++ + D    ++K+IVI+ I 
Sbjct: 161 IEEGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score =  173 bits (441), Expect = 1e-54
 Identities = 83/223 (37%), Positives = 111/223 (49%), Gaps = 36/223 (16%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR-KKIEL 65
           RG  I+ EG DR+GKTTQ   L   L  N      + FP+R+   G +I+EYL     +L
Sbjct: 4   RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDDSFQL 60

Query: 66  PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
            DQA HLLFSANRWE    + K + +G  + +M                DRY +SGVA+S
Sbjct: 61  SDQAIHLLFSANRWEIVDKIKKDLLEGKNI-VM----------------DRYVYSGVAYS 103

Query: 126 AAKE--GMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTDFQRKVAEN 182
           AAK   GMD+ WC QP+ GL KPD  L       +    + GFGDERYE   FQ KV + 
Sbjct: 104 AAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQT 163

Query: 183 YEKL-------KDNIWIDIDA-DKDIDTLGLIVKDIVIDTIKK 217
           + KL        D     +D  +K I      V+ ++   ++ 
Sbjct: 164 FMKLLDKEIRKGDESITIVDVTNKGIQE----VEALIWQIVEP 202

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score =  156 bits (396), Expect = 4e-48
 Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 42/228 (18%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTG-HIIDEYLRKK---IEL 65
            I  EG D +GK T  +KL             + FP    S    I  E L  +   +  
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 66  PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
              A   LF+ +R     T+  L      + I+                DRY  S  A+S
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVV-IL----------------DRYVASNAAYS 104

Query: 126 AAK-----EGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRK-------GFGDER 169
           AA+      G   +W  + E    GLPKPD  +L  ++ E A +R +       G   + 
Sbjct: 105 AARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDN 164

Query: 170 YEQ-TDFQRKVAENYEKLKD----NIWIDIDADKDIDTLGLIVKDIVI 212
           YE+  + Q++    Y +L        W+ + AD D   L   +    +
Sbjct: 165 YERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDV 212

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Length = 213

 Score =  113 bits (285), Expect = 2e-31
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 46/234 (19%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           +G  I FEG D SGK++QA  L D++        ++   + +     II E  +K   L 
Sbjct: 3   KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV--YLTEWNSSDWIHDIIKEAKKKD-LLT 59

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYSFSGV 122
                L+ + +  +R     + I                  L  G       DRY ++  
Sbjct: 60  PLTFSLIHATDFSDR---YERYI---------------LPMLKSGFIVIS--DRYIYTAY 99

Query: 123 AFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKG--------------FGD 167
           A  + + G+DI W  +      KPD     +++ + AL+R K               F  
Sbjct: 100 ARDSVR-GVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPG 158

Query: 168 ERYEQT--DFQRKVAENYEKL-KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218
              E+    +Q  + E Y+KL KD  +I ID  K    + + ++  V + I  S
Sbjct: 159 LSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDNS 212

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Length = 195

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 50/225 (22%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRKKI-- 63
            I FEG D SGKTTQAKKL +YL +                     G  + E LR+ +  
Sbjct: 2   LIAFEGIDGSGKTTQAKKLYEYLKQKGYF---------VSLYREPGGTKVGEVLREILLT 52

Query: 64  -ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTNDRYS 118
            EL ++   LLF A+R +       LIE+ I             +L +        DR+ 
Sbjct: 53  EELDERTELLLFEASRSK-------LIEEKI-----------IPDLKRDKVVIL--DRFV 92

Query: 119 FSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGDERYEQTD 174
            S +A+    +G+D+ +     +      KPD  LL  +  + AL+R K     R+E  +
Sbjct: 93  LSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLK--EKNRFENKE 150

Query: 175 FQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
           F  KV + + +L   ++N+ + IDA  + + +   +   +   ++
Sbjct: 151 FLEKVRKGFLELAKEEENVVV-IDASGEEEEVFKEILRALSGVLR 194

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Length = 213

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 56/238 (23%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRKK 62
           R  +IV EG + +GKTT    +V+ L +  I           + T    G  + E LR  
Sbjct: 2   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRD--------MVFTREPGGTQLAEKLRSL 53

Query: 63  IELPDQAAH---------LLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG-- 111
           +                 L+F A R +       L+E  I           +  L  G  
Sbjct: 54  LLDIKSVGDEVITDKAEVLMFYAARVQ-------LVETVI-----------KPALANGTW 95

Query: 112 --CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGF 165
                DR+  S  A+     G+D            G  +PD  L   +  E  L+R +  
Sbjct: 96  VIG--DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153

Query: 166 GDE-RYEQ--TDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
           G+  R EQ   DF  +    Y +L     +I   IDA + ++ +   ++  V   +K+
Sbjct: 154 GELDRIEQESFDFFNRTRARYLELAAQDKSIHT-IDATQPLEAVMDAIRTTVTHWVKE 210

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236

 Score = 91.9 bits (229), Expect = 6e-23
 Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 54/242 (22%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIID 56
             S      FIV EG + +GK+T  + +V+ L +N I             T    G ++ 
Sbjct: 20  FQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH--------ITRTREPGGTLLA 71

Query: 57  EYLRK-------KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLD 109
           E LR          EL D    LL  A R +       L+E  I           +  L 
Sbjct: 72  EKLRALVKEEHPGEELQDITELLLVYAARVQ-------LVENVI-----------KPALA 113

Query: 110 QG----CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQR 161
           +G       DR+  S  A+      +  S     ++   G  KPD  L   ++ +  L+R
Sbjct: 114 RGEWVVG--DRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER 171

Query: 162 RKGFGDE-RYEQ--TDFQRKVAENYEKL---KDNIWIDIDADKDIDTLGLIVKDIVIDTI 215
            +G G+  R E+    F  +  E Y +L    D++ + IDA + I+ +   ++  + D +
Sbjct: 172 ARGRGELDRIEKMDISFFERARERYLELANSDDSVVM-IDAAQSIEQVTADIRRALQDWL 230

Query: 216 KK 217
            +
Sbjct: 231 SQ 232

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A* Length = 213

 Score = 89.9 bits (224), Expect = 2e-22
 Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 55/236 (23%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLR-- 60
            G F+  EG + +GK+T    L + L +  I             T    G  + E +R  
Sbjct: 5   TGLFVTLEGPEGAGKSTNRDYLAERLRERGIE---------VQLTREPGGTPLAERIREL 55

Query: 61  ----KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----C 112
                   +      LL  A R +        +   I              L +G    C
Sbjct: 56  LLAPSDEPMAADTELLLMFAARAQ-------HLAGVI-----------RPALARGAVVLC 97

Query: 113 TNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFGDE 168
             DR++ +  A+     G+  +     E    G  +PD  L+F L  E  L R    G  
Sbjct: 98  --DRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 155

Query: 169 -RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
            R+EQ    F   V + Y +      +   + +DA   +  +   +  ++ + +++
Sbjct: 156 DRFEQEDRRFFEAVRQTYLQRAAQAPERYQV-LDAGLPLAEVQAGLDRLLPNLLER 210

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Length = 227

 Score = 88.1 bits (219), Expect = 1e-21
 Identities = 48/232 (20%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 2   ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDE 57
              + RG FI FEG D +GKTT  +   D L +   P+         + T    G  + E
Sbjct: 19  PGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGR-----HVVVTREPGGTRLGE 73

Query: 58  YLRKKI---ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG--- 111
            LR+ +    +  +   LL  A R E        +   I           E  L +G   
Sbjct: 74  TLREILLNQPMDLETEALLMFAGRRE-------HLALVI-----------EPALARGDWV 115

Query: 112 -CTNDRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKLN-EEALQRRKGFG 166
               DR++ +  A+     G+        E+   G  +PD  +LF +  + A  RR    
Sbjct: 116 VS--DRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173

Query: 167 DE-RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIV 211
              ++E     F  +    Y +          I +D+ + I  +   ++ ++
Sbjct: 174 MPDKFESESDAFFARTRAEYLRRAQEAPHRFVI-VDSSEPIAQIRKQLEGVL 224

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score = 86.2 bits (214), Expect = 8e-21
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 55/235 (23%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRK- 61
             AFI FEG + SGKTT   ++   L K+             I T    G    E +RK 
Sbjct: 25  MSAFITFEGPEGSGKTTVINEVYHRLVKDY----------DVIMTREPGGVPTGEEIRKI 74

Query: 62  ---KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTN 114
                ++  +   +LF+A+R E        +   +              L +G    C  
Sbjct: 75  VLEGNDMDIRTEAMLFAASRRE-------HLVLKV-----------IPALKEGKVVLC-- 114

Query: 115 DRYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKL-NEEALQRRKGFGDE-- 168
           DRY  S +A+     G+ +       +       PD  +   +  E   +R      +  
Sbjct: 115 DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN 174

Query: 169 RYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
           R +Q    F  KV E Y+++           ++AD+ ++ +       +I  ++K
Sbjct: 175 RLDQEDLKFHEKVIEGYQEIIHNESQRFKS-VNADQPLENVVEDTYQTIIKYLEK 228

>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 55/234 (23%)

Query: 8   GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDEYLRK-- 61
            AFI FEG + SGKTT   ++   L K+             I T    G    E +RK  
Sbjct: 2   SAFITFEGPEGSGKTTVINEVYHRLVKDY----------DVIMTREPGGVPTGEEIRKIV 51

Query: 62  --KIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG----CTND 115
               ++  +   +LF+A+R E        +   +              L +G    C  D
Sbjct: 52  LEGNDMDIRTEAMLFAASRRE-------HLVLKV-----------IPALKEGKVVLC--D 91

Query: 116 RYSFSGVAFSAAKEGMDISWCFQPEK---GLPKPDAVLLFKL-NEEALQRRKGFGDE--R 169
           RY  S +A+     G+ +       +       PD  +   +  E   +R      +  R
Sbjct: 92  RYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 151

Query: 170 YEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
            +Q    F  KV E Y+++           ++AD+ ++ +       +I  ++K
Sbjct: 152 LDQEDLKFHEKVIEGYQEIIHNESQRFKS-VNADQPLENVVEDTYQTIIKYLEK 204

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Length = 223

 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 53/237 (22%)

Query: 2   ASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST----GHIIDE 57
            +Q P   FI FEG D SGKTTQ+  L +YL++    +         + T    G +++E
Sbjct: 15  QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV-------VLTREPGGTLLNE 67

Query: 58  YLRKKI----ELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQG-- 111
            +R  +     L   +  L F A R E          + I           + +L Q   
Sbjct: 68  SVRNLLFKAQGLDSLSELLFFIAMRRE-------HFVKII-----------KPSLMQKKI 109

Query: 112 --CTNDRYSFSGVAFSAAKEGMDISWCFQPEKGL--PKPDAVLLFKLN-EEALQRRKGFG 166
             C  DR+  S +A+    +G+D S   Q    +    PD   +  ++  E+L R     
Sbjct: 110 VIC--DRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSC--- 164

Query: 167 DERYEQ--TDFQRKVAENYEKL----KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
              YE    +F  +V + +  +         + I    +   +  I   + ++ IK 
Sbjct: 165 KNGYEFADMEFYYRVRDGFYDIAKKNPHRCHV-ITDKSETYDIDDINF-VHLEVIKV 219

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 46/203 (22%)

Query: 19  SGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR 78
            GK+T  K+L   L+ +                G II+  +      P ++  LL     
Sbjct: 13  VGKSTTCKRLAAQLDNS------------AYIEGDIINHMVVGGYRPPWESDELL----- 55

Query: 79  WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ 138
                    L  + IT   ++  L     +                  A+          
Sbjct: 56  --------ALTWKNITDLTVNFLLAQNDVVLDYIAFPDE---------AEALAQTVQ--- 95

Query: 139 PEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADK 198
             K        ++   N E L RR      R +      +  E  E+ +      ID   
Sbjct: 96  -AKVDDVEIRFIILWTNREELLRR---DALRKKDEQMGERCLELVEEFES---KGIDERY 148

Query: 199 DIDTLGLIVKDIV--IDTIKKSQ 219
             +T  L   ++   +  +K + 
Sbjct: 149 FYNTSHLQPTNLNDIVKNLKTNP 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	100.0
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	100.0
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	100.0
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	100.0
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	100.0
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	100.0
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	100.0
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	100.0
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.97
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.97
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.97
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.96
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.94
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.93
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.9
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.86
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.85
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.84
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.83
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.83
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.83
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.83
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.81
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.81
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.8
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.8
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.79
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.79
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.79
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.79
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.78
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.78
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.78
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	99.78
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.78
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.77
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.77
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.77
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.76
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.76
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.76
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.74
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.74
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	99.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.69
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.68
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.68
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.67
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.65
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.65
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.63
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.63
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.6
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.59
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.59
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.58
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	99.53
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.52
1via_A	175	Shikimate kinase; structural genomics, transferase	99.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.52
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.48
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.47
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.46
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.44
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.43
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.43
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.42
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.42
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.41
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.4
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.38
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.38
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.34
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.34
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	99.32
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.32
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.32
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.31
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.3
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.3
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.29
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.26
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.26
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.25
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.25
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.24
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.23
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.22
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.12
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.06
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.03
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.98
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.96
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.94
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.91
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.87
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.86
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.73
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.72
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.7
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.68
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.65
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.64
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.52
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.49
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.23
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.22
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.22
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.2
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.2
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.12
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.06
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.9
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.87
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.86
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.8
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.74
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.74
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.74
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.73
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.72
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.72
3bos_A	242	Putative DNA replication factor; P-loop containing	97.71
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.7
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.67
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.67
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.65
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.62
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.62
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.61
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.6
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.55
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.53
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.52
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.51
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.5
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.47
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.46
2og2_A	359	Putative signal recognition particle receptor; nuc	97.46
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.46
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.46
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.46
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.45
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.42
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.38
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.38
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.38
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.37
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.34
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.33
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.32
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.3
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.3
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.29
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.29
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.28
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.28
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.26
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.26
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.26
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.26
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.25
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.25
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.24
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.24
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.24
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.23
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.23
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.22
2xxa_A	433	Signal recognition particle protein; protein trans	97.22
2qgz_A	308	Helicase loader, putative primosome component; str	97.22
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.21
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.21
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.21
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.21
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.21
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.2
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.2
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.2
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.2
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.2
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.19
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.19
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.19
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.18
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.18
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.18
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.18
1g6h_A	257	High-affinity branched-chain amino acid transport	97.17
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.17
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.16
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.16
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.16
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.16
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.15
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.13
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.12
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.11
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.1
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.1
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.09
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.09
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.09
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.09
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.08
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.07
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.07
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.07
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.07
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.07
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.06
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.06
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.05
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.04
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.04
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.04
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.04
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.03
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.03
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.02
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.02
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.01
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.99
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.99
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.99
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.99
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.97
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.97
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.96
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.96
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.95
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.94
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.94
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.93
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.93
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.92
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.92
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.91
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.91
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.89
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.89
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.89
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.88
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.86
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.86
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.85
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.85
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.83
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.83
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.83
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.82
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.81
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.8
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.8
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.79
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.79
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.79
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.78
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.77
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.77
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.77
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.75
3end_A	307	Light-independent protochlorophyllide reductase ir	96.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.74
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.74
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.74
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.74
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.74
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.73
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.73
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.73
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.73
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.73
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.71
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.71
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.7
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.7
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.69
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.68
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.67
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.65
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.65
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.65
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.65
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.64
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.63
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.63
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.63
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.63
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.62
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.62
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.62
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.62
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.61
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.6
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.58
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.58
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.58
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.58
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.57
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.57
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.57
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.56
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.55
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.54
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.54
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.53
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.53
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.52
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.52
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.51
3pvs_A	447	Replication-associated recombination protein A; ma	96.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.49
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.49
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.49
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.49
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.49
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.48
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.47
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.47
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.47
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.47
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.47
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.46
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.45
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.45
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.45
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.45
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.44
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.44
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.43
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.43
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.43
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.42
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.42
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.41
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.41
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.41
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.41
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.4
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.4
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.4
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.39
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.39
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.39
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.38
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.38
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.36
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.35
3co5_A	143	Putative two-component system transcriptional RES	96.35
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.35
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.34
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.33
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.33
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	96.33
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.33
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.33
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.31
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.3
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.29
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.29
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.28
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.28
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.26
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.26
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.26
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.26
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.25
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.25
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.25
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.24
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	96.23
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.22
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.22
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.22
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.22
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.22
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.2
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.2
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.19
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.18
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.18
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	96.17
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.17
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	96.17
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.16
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.15
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.15
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.14
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.13
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.13
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.12
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.11
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.11
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.1
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.1
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.1
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.1
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.1
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.09
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.09
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.09
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.09
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.09
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.08
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.06
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.05
3io5_A	333	Recombination and repair protein; storage dimer, i	96.04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.04
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.04
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	96.03
2fna_A	357	Conserved hypothetical protein; structural genomic	96.0

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=100.00  E-value=1.7e-35  Score=232.87  Aligned_cols=191  Identities=23%  Similarity=0.328  Sum_probs=166.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLT   86 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~   86 (227)
                      +++|+|+|++||||||+++.|++.|. .++++..+++|+ +++.|+.+++++.++..++.....++|+++|++++ ..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~-~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~   79 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI   79 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESST-TCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCC-CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999996 588999999997 78899999999999888999999999999999976 4789


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHHHhc
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      +++.+|.+|||                 |||++|+++|++..++++.+|+..+.   ...+.||++|||++||+++.+|+
T Consensus        80 p~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri  142 (205)
T 4hlc_A           80 PALKEGKVVLC-----------------DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERI  142 (205)
T ss_dssp             HHHHTTCEEEE-----------------ECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHcCCEEEe-----------------cCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHH
Confidence            99999999999                 99999999999887788888886654   35679999999999999999998


Q ss_pred             CCCC---CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        164 GFGD---ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       164 ~~r~---~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .+|+   ++++  +.++++++++.|..+...   .|++||+++++++|.++|.+.|.+.|++
T Consensus       143 ~~r~~~~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~  204 (205)
T 4hlc_A          143 IKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK  204 (205)
T ss_dssp             HC-------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred             HhcCCcccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            6553   4455  368999999999998764   6999999999999999999999988764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=100.00  E-value=8.3e-35  Score=230.06  Aligned_cols=199  Identities=41%  Similarity=0.718  Sum_probs=174.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC-CCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI-ELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++|++|+|+|++||||||+++.|++.++.   ++..+++|..+++.|+.+++++.++. .+.+..+.++|+++|+++.+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~   79 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK   79 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999986   56678888668899999999988754 578889999999999997788


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC--CCChhhhhcccCCCCCCCEEEEe-ecCHHHHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE--GMDISWCFQPEKGLPKPDAVLLF-KLNEEALQR  161 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pd~vi~L-~~~~e~~~~  161 (227)
                      |.+++.+|.+|||                 |||++|+++|+....  +.+..|+..+....+.||++||| ++|++++.+
T Consensus        80 I~paL~~g~~VI~-----------------DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~  142 (216)
T 3tmk_A           80 IKKDLLEGKNIVM-----------------DRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAE  142 (216)
T ss_dssp             HHHHHHTTCEEEE-----------------ESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGG
T ss_pred             HHHHHHcCCEEEE-----------------eccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHH
Confidence            9999999999999                 999999999997641  35678888887788899999999 999999999


Q ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHhh-------CCeEEEc-CCCCHHHHHHHHHHHHHHHhhhcC-CCCCc
Q psy16874        162 RKGFGDERYEQTDFQRKVAENYEKLKD-------NIWIDID-ADKDIDTLGLIVKDIVIDTIKKSQ-FSPLE  224 (227)
Q Consensus       162 R~~~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Id-~~~s~~~v~~~I~~~i~~~l~~~~-~~~~~  224 (227)
                      |+..+++++++.++++++++.|..+..       .++++|| +++++++|.++|.+.|...+.... ++++.
T Consensus       143 R~~~~~dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~~~~~~~~~  214 (216)
T 3tmk_A          143 KSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDHDKFS  214 (216)
T ss_dssp             CCSSSCCTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred             HhccCcccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccc
Confidence            998777888889999999999999864       2799999 999999999999999999998644 55554

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=100.00  E-value=2.5e-34  Score=227.37  Aligned_cols=194  Identities=21%  Similarity=0.302  Sum_probs=171.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC--CCCHHHHHHHHHhhhhhhh-
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI--ELPDQAAHLLFSANRWERE-   82 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-   82 (227)
                      ++|++|+|+|++||||||+++.|++.+...|+++..+++|. +++.|+.+++++.++.  .+.+..+.++|+++|++++ 
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~   82 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA   82 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998899996 7888999999998764  5788899999999999986 


Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHH
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~  159 (227)
                      +.+.+++.+|.+|||                 |||++|+++|+...++++..|+..+.   ...+.||++|||++|++++
T Consensus        83 ~~i~p~l~~g~~Vi~-----------------DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~  145 (213)
T 4edh_A           83 GVIRPALARGAVVLC-----------------DRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIG  145 (213)
T ss_dssp             HTHHHHHHTTCEEEE-----------------ESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH
T ss_pred             HHHHHHHHCCCEEEE-----------------CccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence            578999999999999                 99999999999886688888886654   3568999999999999999


Q ss_pred             HHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        160 QRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       160 ~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .+|+..|+  ++++.  .++++++.+.|..+...   .+++||++++++++.++|.+.|...+..
T Consensus       146 ~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4edh_A          146 LARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER  210 (213)
T ss_dssp             HHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            99998764  56664  78999999999988753   6999999999999999999999988754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=100.00  E-value=1.8e-34  Score=227.99  Aligned_cols=193  Identities=23%  Similarity=0.300  Sum_probs=169.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC-CeEEeeCCCCCCCchHHHHHHHhhc-----CCCCHHHHHHHHHhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI-PSQFVNFPDRTISTGHIIDEYLRKK-----IELPDQAAHLLFSANRWE   80 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   80 (227)
                      +|++|+|+|++||||||+++.|++.|...|+ ++..+++|+ ++++|+.+++++..+     ..+.+..+.++|+++|++
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~   80 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   80 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC-CCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999 777789986 788999999998732     457888999999999999


Q ss_pred             hhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCH
Q psy16874         81 REP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNE  156 (227)
Q Consensus        81 ~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~  156 (227)
                      +.. .|.+++.+|.+|||                 |||++|+++|++..++++..|+..+.   ...+.||++|||++|+
T Consensus        81 ~~~~~i~paL~~g~~VI~-----------------DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~  143 (213)
T 4tmk_A           81 LVETVIKPALANGTWVIG-----------------DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTP  143 (213)
T ss_dssp             HHHHTHHHHHHTTCEEEE-----------------ECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred             HHHHHHHHHHHCCCEEEE-----------------cCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCH
Confidence            875 79999999999999                 99999999999887788888886543   4577999999999999


Q ss_pred             HHHHHhcCCCC--CCcc--cHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        157 EALQRRKGFGD--ERYE--QTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       157 e~~~~R~~~r~--~~~~--~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      +++.+|+.+|+  ++++  +.++++++.+.|..+...  .+++||+++++++|.++|.+.|...+.+
T Consensus       144 e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~  210 (213)
T 4tmk_A          144 EVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  210 (213)
T ss_dssp             HHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999986553  4565  488999999999998764  7999999999999999999999988854

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=1.3e-34  Score=230.70  Aligned_cols=191  Identities=21%  Similarity=0.343  Sum_probs=162.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhh
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN----NIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRW   79 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (227)
                      +|.+|++|+|+|++||||||+++.|++.+...    |+++..+++|. +++.|+.+++++.++ .+.+..+.++|+++|+
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~-~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~   98 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG-GTRLGETLREILLNQ-PMDLETEALLMFAGRR   98 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC-CChHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999988    99998899995 778899999999887 5688888999999999


Q ss_pred             hhhh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecC
Q psy16874         80 EREP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLN  155 (227)
Q Consensus        80 ~~~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~  155 (227)
                      .++. .+.+++.+|.+|||                 |||++|+++|+...++++.+|+..+.   ...+.||++|||++|
T Consensus        99 ~~~~~~i~p~l~~g~~VI~-----------------DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~  161 (227)
T 3v9p_A           99 EHLALVIEPALARGDWVVS-----------------DRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP  161 (227)
T ss_dssp             HHHHHTHHHHHHTTCEEEE-----------------ECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEE-----------------eccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence            9865 79999999999999                 99999999999876688888886654   356899999999999


Q ss_pred             HHHHHHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       156 ~e~~~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ++++.+|+..|+  ++++.  .++++++.+.|+.+...   ++++||+++++++|.++|.+.|..
T Consensus       162 ~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          162 PQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             SSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            999999998764  56764  68999999999988753   699999999999999999998874

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=100.00  E-value=4.6e-34  Score=223.41  Aligned_cols=187  Identities=27%  Similarity=0.362  Sum_probs=162.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      |+|+|+|++||||||+++.|++.|...|+++..+++|+ +++.++.+++++.+. ...+....++|+++++.+...+.++
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~-~t~~~~~ir~~l~~~-~~~~~~~~ll~~a~r~~~~~~I~~~   78 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG-GTETGEKIRKILLEE-EVTPKAELFLFLASRNLLVTEIKQY   78 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CCcHHHHHHHHhhcc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999997 788889998887765 4577788888999998888889999


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc---cCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP---EKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      +..|.+|||                 |||++|+++|++...+.+..|+..+   ....+.||++|||++||+++.+|...
T Consensus        79 L~~g~~Vi~-----------------DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~  141 (197)
T 3hjn_A           79 LSEGYAVLL-----------------DRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGE  141 (197)
T ss_dssp             HTTTCEEEE-----------------ESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC--
T ss_pred             HHCCCeEEe-----------------cccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcC
Confidence            999999999                 9999999999988778887777654   34567899999999999999999764


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                       .+++++.++++++++.|..++..   .+++||+++++++|.++|.+.|.+.+
T Consensus       142 -~dr~e~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          142 -LNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             --CTTCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             -cCccccHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence             46788889999999999998753   69999999999999999999987544

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=100.00  E-value=1.8e-33  Score=225.28  Aligned_cols=194  Identities=22%  Similarity=0.269  Sum_probs=165.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC-eEEeeCCCCCCCchHHHHHHHhhc---CCCCHHHHHHHHHhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP-SQFVNFPDRTISTGHIIDEYLRKK---IELPDQAAHLLFSANRWER   81 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   81 (227)
                      ++|++|+|+|++||||||+++.|++.+...|++ +..+++|. +++.|+.+++++..+   ..+.+.++.++|+++|+++
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~-~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG-GTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC-CCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999 77789996 788999999988632   4578889999999999998


Q ss_pred             hh-HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHH
Q psy16874         82 EP-TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEE  157 (227)
Q Consensus        82 ~~-~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e  157 (227)
                      .. .+.+++.+|.+|||                 |||++|+++|++..++++..|+..+.   ...+.||++|||++|++
T Consensus       104 ~~~~I~paL~~g~~VI~-----------------DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e  166 (236)
T 3lv8_A          104 VENVIKPALARGEWVVG-----------------DRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPK  166 (236)
T ss_dssp             HHHTHHHHHHTTCEEEE-----------------ESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHH
T ss_pred             HHHHHHHHHHcCCEEEE-----------------eeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence            75 79999999999999                 99999999999886688877876543   35689999999999999


Q ss_pred             HHHHhcCCCC--CCccc--HHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        158 ALQRRKGFGD--ERYEQ--TDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       158 ~~~~R~~~r~--~~~~~--~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      ++.+|+.+|+  ++++.  .++++++.+.|..+...  .+++||++++++++.++|.+.|...+.+
T Consensus       167 ~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~  232 (236)
T 3lv8_A          167 LGLERARGRGELDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ  232 (236)
T ss_dssp             HHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999998764  46653  79999999999988753  5999999999999999999999988865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=100.00  E-value=3.8e-34  Score=227.09  Aligned_cols=191  Identities=23%  Similarity=0.283  Sum_probs=156.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+|++|+|+|++||||||+++.|++.+.. .|+++.. +++|+ ++++++.+++++.+...+......++|+++|+++..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~-~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~   97 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG-GTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFV   97 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC-SSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC-CChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999 8999988 88997 788899999988864447888888999999999876


Q ss_pred             H-HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc---cCCCCCCCEEEEeecCHHHH
Q psy16874         84 T-LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP---EKGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        84 ~-i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pd~vi~L~~~~e~~  159 (227)
                      . +.+++.+|.+|||                 |||++|+++|++..++.+.+|+..+   ... +.||++|||++|++++
T Consensus        98 ~~I~paL~~g~~VI~-----------------DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~  159 (223)
T 3ld9_A           98 KIIKPSLMQKKIVIC-----------------DRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINES  159 (223)
T ss_dssp             HTHHHHHHTTCEEEE-----------------ESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC----
T ss_pred             HHHHHHHhcCCeEEE-----------------ccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHH
Confidence            4 9999999999999                 9999999999987668888888665   334 8999999999999999


Q ss_pred             HHhcCCCCCCccc--HHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874        160 QRRKGFGDERYEQ--TDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       160 ~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~  218 (227)
                      .+|+  ++++++.  .++++++.+.|..+...   ++++||++++++++ ++|.+.|...+...
T Consensus       160 ~~Ri--~rdr~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg~~  220 (223)
T 3ld9_A          160 LSRS--CKNGYEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIKVL  220 (223)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHHHH
T ss_pred             HHHh--ccCccccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHhhh
Confidence            9999  3456764  89999999999988753   69999999999999 99999999887654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.97  E-value=2.2e-29  Score=198.57  Aligned_cols=202  Identities=42%  Similarity=0.786  Sum_probs=163.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|++|+|+|++||||||+++.|++.++..++++..+++|..+.+.+..+++++..+..+.+.....+|.++++.....+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998888875456667778888877666777766667777776666677


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .+.+..+..|++                 |||+++++++...+.+.+.+|+..+....+.||++|||++|++++.+|+.+
T Consensus        87 ~~~l~~~~~vi~-----------------dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r  149 (215)
T 1nn5_A           87 KEKLSQGVTLVV-----------------DRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAF  149 (215)
T ss_dssp             HHHHHTTCEEEE-----------------ESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC---
T ss_pred             HHHHHCCCEEEE-----------------eCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhcc
Confidence            788888889999                 999999999986543556677766655556799999999999999999975


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCc
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE  224 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~  224 (227)
                      +.+.++..++.+++...|..+...   .+++||++++++++.++|.+.+...+......+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~~~~~~~~  211 (215)
T 1nn5_A          150 GHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG  211 (215)
T ss_dssp             --CTTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGGGSCCC
T ss_pred             CccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhhccCcchh
Confidence            545566667888888888887653   68999999999999999999999988877777765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.97  E-value=3.7e-30  Score=205.83  Aligned_cols=193  Identities=22%  Similarity=0.313  Sum_probs=160.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-h
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-P   83 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (227)
                      +.++++|+|+|+|||||||+++.|++.++. ++++...++|. +.+.++.+++++.++..+.+....++|.++|+... +
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~  100 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL  100 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998 88887788776 66788889999887766788888888998888764 4


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhh---hhcccCCCCCCCEEEEeecCHHHHH
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISW---CFQPEKGLPKPDAVLLFKLNEEALQ  160 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pd~vi~L~~~~e~~~  160 (227)
                      .+.+.+..|..|++                 |||++|+++|++..++++..+   +..+....+.||++|||++|++++.
T Consensus       101 ~i~~~l~~g~~Vi~-----------------DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~  163 (229)
T 4eaq_A          101 KVIPALKEGKVVLC-----------------DRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGR  163 (229)
T ss_dssp             CCHHHHHTTCEEEE-----------------ECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHH
T ss_pred             HHHHHHHCCCEEEE-----------------CCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH
Confidence            67888889999999                 999999999998766666553   4444455679999999999999999


Q ss_pred             HhcCCCC---CCcc--cHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        161 RRKGFGD---ERYE--QTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       161 ~R~~~r~---~~~~--~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      +|+..|+   ++++  ..++++++.+.|..+...   .+++||++++++++.++|.+.|.+.+.
T Consensus       164 ~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          164 ERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             HHHHHC-----CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence            9997653   4454  468899999999998764   689999999999999999999998775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.97  E-value=6.2e-29  Score=195.76  Aligned_cols=197  Identities=39%  Similarity=0.755  Sum_probs=159.3

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE   80 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (227)
                      |..++++|++|+|+|+|||||||+++.|++.++..+++++.+++|..+.+.+..+++++..+..+++.....+|..+++.
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~   82 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWE   82 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            55656678999999999999999999999999999999987888865677788888888777677877777777777776


Q ss_pred             hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHH
Q psy16874         81 REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQ  160 (227)
Q Consensus        81 ~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~  160 (227)
                      .++.+.+.+..+..|++                 |||+.++.++.....+++.+|+..+......||++|||++|++++.
T Consensus        83 ~~~~i~~~l~~~~~vi~-----------------D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~  145 (212)
T 2wwf_A           83 HMNEIKSLLLKGIWVVC-----------------DRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQ  145 (212)
T ss_dssp             THHHHHHHHHHTCEEEE-----------------ECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGG
T ss_pred             HHHHHHHHHhCCCEEEE-----------------ecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHH
Confidence            66677788888888999                 9999888777654324555777655554568999999999999999


Q ss_pred             HhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        161 RRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       161 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      +|+..|.++++..++.+++...|..+... .+++||+++++++++++|.+.+...
T Consensus       146 ~Rl~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          146 NRSDYGEEIYEKVETQKKIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             GSTTTTSSTTCSHHHHHHHHHHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HhhccCcccccHHHHHHHHHHHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            99976545566677888888888776543 6899999999999999999988655

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.96  E-value=1.6e-27  Score=186.56  Aligned_cols=196  Identities=41%  Similarity=0.728  Sum_probs=155.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|++|+|+|++||||||+++.|++.+  .|+++..+.+|.++.+.++.+++++.++..+.+....++|.++++.....+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i   79 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFI   79 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999987  345666677775456678888888877666777766777777777666677


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .+.+..+..|++                 |||+++.+++.... +.+.+|+..+....+.||++|||++|++++.+  .+
T Consensus        80 ~~~l~~~~~vi~-----------------Dr~~~s~~~~~~~~-g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R  139 (204)
T 2v54_A           80 QEQLEQGITLIV-----------------DRYAFSGVAYAAAK-GASMTLSKSYESGLPKPDLVIFLESGSKEINR--NV  139 (204)
T ss_dssp             HHHHHTTCEEEE-----------------ESCHHHHHHHHHHT-TCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT--CC
T ss_pred             HHHHHCCCEEEE-----------------ECchhhHHHHHHcc-CCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hc
Confidence            788888899999                 99999998887654 66667776555555689999999999999988  22


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCc
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE  224 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~  224 (227)
                      +.+.++..++++++...|..+...   .+++||+++++++++++|.+.+...+....+ +++
T Consensus       140 ~~d~~e~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~~~-~~~  200 (204)
T 2v54_A          140 GEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIHTVTG-PVG  200 (204)
T ss_dssp             SSSTTCCSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHHHCCS-CCC
T ss_pred             CcccccHHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHhhccC-Chh
Confidence            224455567888898889887653   6899999999999999999999998887666 665

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.94  E-value=5.8e-25  Score=172.74  Aligned_cols=188  Identities=22%  Similarity=0.367  Sum_probs=142.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---CCCHHHHHHHHHhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---ELPDQAAHLLFSANRWERE   82 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   82 (227)
                      +++++|+|+|+|||||||+++.|++.++..| ++...++|.     ++.+++++..+.   .+......+++.+.++...
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   75 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNS-----SDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRY   75 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTC-----CCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCc-----HHHHHHHHhccccccCCCHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999999999877 776666652     445666666543   3555555556666665543


Q ss_pred             -hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         83 -PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        83 -~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                       ..+.+.+..|..||+                 |||+++.++|. ...+.+..|+..+....+.||++|||++|++++.+
T Consensus        76 ~~~i~~~l~~g~~vi~-----------------D~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~  137 (213)
T 2plr_A           76 ERYILPMLKSGFIVIS-----------------DRYIYTAYARD-SVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALE  137 (213)
T ss_dssp             HHTHHHHHHTTCEEEE-----------------ESCHHHHHHHH-HTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHH
T ss_pred             HHHHHHHHhCCCEEEE-----------------eCcHhHHHHHH-HhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHH
Confidence             356677788889999                 99999988887 33466667777666555679999999999999999


Q ss_pred             hcC-CCC--CC-------------ccc-HHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        162 RKG-FGD--ER-------------YEQ-TDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       162 R~~-~r~--~~-------------~~~-~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      |+. .|+  +.             ++. .++.+++...|..+... .+++||++++++++.++|.+.+...+..
T Consensus       138 Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~~~  211 (213)
T 2plr_A          138 RIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGELIDN  211 (213)
T ss_dssp             HHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence            987 654  23             222 36777778788877643 6899999999999999999999877653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.93  E-value=1.4e-24  Score=168.29  Aligned_cols=187  Identities=27%  Similarity=0.397  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PTLTK   87 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~   87 (227)
                      ++|+|+|+|||||||+++.|++.++..|+++...++|. +.+.++.+++++.++ .+.......++...+...+ ..+++
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~-~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~   78 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG-GTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIP   78 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC-SSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999988888888887775 456677778877765 4455544455555565554 46777


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      .+..+..|++                 |||+++++++.+.....+..++..+.   .....||++|||++|++++.+|+.
T Consensus        79 ~l~~~~~vi~-----------------dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~  141 (195)
T 2pbr_A           79 DLKRDKVVIL-----------------DRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLK  141 (195)
T ss_dssp             HHHTTCEEEE-----------------ESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHhCCCEEEE-----------------CcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhh
Confidence            8888999999                 99999988887554455544554322   223379999999999999999997


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        165 FGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      +| +.++..++++++...|+.+..  ..+++||++++++++.++|.+.+.+.+
T Consensus       142 ~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~l  193 (195)
T 2pbr_A          142 EK-NRFENKEFLEKVRKGFLELAKEEENVVVIDASGEEEEVFKEILRALSGVL  193 (195)
T ss_dssp             TT-TCCCCHHHHHHHHHHHHHHHHHSTTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred             cc-CccchHHHHHHHHHHHHHHHhhCCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            53 445567788888888887762  268999999999999999999887654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.90  E-value=3.7e-24  Score=169.06  Aligned_cols=174  Identities=19%  Similarity=0.170  Sum_probs=122.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER   81 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (227)
                      +.+++++|+|.|||||||||+|+.|++.++..++++.. +++ ...+++.|..++.++..|..+++....          
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~----------   94 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL----------   94 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHH----------
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHH----------
Confidence            44678999999999999999999999999998988855 554 234677889999999999999997766          


Q ss_pred             hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                       ..+.+.+.+.             .+..+|||+|     +||++..++    ..+   ......|+++|+|++|.+++.+
T Consensus        95 -~lv~~~l~~~-------------~~~~~g~ilD-----GfPRt~~Qa----~~l---~~~~~~~~~vi~l~v~~e~~~~  148 (217)
T 3umf_A           95 -ALLKEAMIKL-------------VDKNCHFLID-----GYPRELDQG----IKF---EKEVCPCLCVINFDVSEEVMRK  148 (217)
T ss_dssp             -HHHHHHHHHH-------------TTTCSEEEEE-----TBCSSHHHH----HHH---HHHTCCCSEEEEEECCHHHHHH
T ss_pred             -HHHHHHHhhc-------------cccccCcccc-----cCCCcHHHH----HHH---HHhCCccCEEEeccCCHHHHHH
Confidence             3333333221             1233456668     888877662    222   2233478999999999999999


Q ss_pred             hcCCCCCCcc----cHHHHHHHHHHHHHHh-------hC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        162 RKGFGDERYE----QTDFQRKVAENYEKLK-------DN--IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       162 R~~~r~~~~~----~~~~~~~~~~~~~~~~-------~~--~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      |+..|.....    +.+.+.+-.+.|.+..       ..  .++.||+++++++|+++|.+.|++
T Consensus       149 Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          149 RLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9987643221    1233333233444332       11  689999999999999999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.86  E-value=4e-22  Score=156.52  Aligned_cols=167  Identities=22%  Similarity=0.240  Sum_probs=118.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |+|+|.|||||||||+|+.|+++++..|+++.. +++. ..+++.|..++.++.+|..+++....           ..+.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~-----------~lv~   69 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII-----------ALIE   69 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHH-----------HHHH
Confidence            579999999999999999999999998888755 4431 22567788889999999999997766           4444


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      +.+...                 +|||+|     |||++..++    ..+.. +......++.+|+|++|.+++.+|+..
T Consensus        70 ~~l~~~-----------------~~~ilD-----GfPRt~~Qa----~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~  123 (206)
T 3sr0_A           70 EVFPKH-----------------GNVIFD-----GFPRTVKQA----EALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG  123 (206)
T ss_dssp             HHCCSS-----------------SCEEEE-----SCCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT
T ss_pred             HhhccC-----------------CceEec-----CCchhHHHH----HHHHhhHHHhccccceeeecCCCHHHHHHHHhC
Confidence            444332                 345557     889887763    33322 233455799999999999999999865


Q ss_pred             CC--------------------CCcc----cHHHHHHHHHHHHHHhh-------C--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GD--------------------ERYE----QTDFQRKVAENYEKLKD-------N--IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~--------------------~~~~----~~~~~~~~~~~~~~~~~-------~--~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      |.                    ....    +.+..++-.+.|.+...       .  .++.||+++++++|+++|.++|.
T Consensus       124 R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             EEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             CccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            41                    0111    13333333334444322       1  68899999999999999999885

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.85  E-value=5.1e-23  Score=167.52  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=116.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCC-----------------eEEeeCCCCCCCchHHHHHHHhhcCCCC
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIP-----------------SQFVNFPDRTISTGHIIDEYLRKKIELP   66 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (227)
                      ..++++|+|+|++||||||+++.|++.+.. ..++                 +...++|. +.+   ....++..+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~-g~~---~~~~~~~~~~~~~   96 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKN-GGN---VLQMMYEKPERWS   96 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------C-CCC---HHHHHHHCHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhcccccccccccccccccc-CCc---hHHHHHhCchhcc
Confidence            356889999999999999999999998742 1110                 11122332 222   2223333221111


Q ss_pred             HHHHHHH-HHhhhhh------hh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCC-----h
Q psy16874         67 DQAAHLL-FSANRWE------RE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMD-----I  133 (227)
Q Consensus        67 ~~~~~~~-~~~~~~~------~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~-----~  133 (227)
                      ......+ +.+.+..      ++ ..+.+.+..|.+|++                 |||++++++|.....+..     .
T Consensus        97 ~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~-----------------Dry~~s~~~y~~~~~~~~e~~~~~  159 (263)
T 1p5z_B           97 FTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYS-----------------DRYIFASNLYESECMNETEWTIYQ  159 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHH-----------------HHHTHHHHHHHTTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceee-----------------cHHHHHHHHHHcCCCCHHHHHHHH
Confidence            1111111 3222222      11 122233344555555                 999999999876643322     3


Q ss_pred             hhhhcccCC---CCCCCEEEEeecCHHHHHHhcCCCCCCc---ccHHHHHHHHHHHHHHh-------------hCCeEEE
Q psy16874        134 SWCFQPEKG---LPKPDAVLLFKLNEEALQRRKGFGDERY---EQTDFQRKVAENYEKLK-------------DNIWIDI  194 (227)
Q Consensus       134 ~~~~~~~~~---~~~pd~vi~L~~~~e~~~~R~~~r~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~~I  194 (227)
                      .|+..+...   .+.||++|||++|++++.+|+..|+...   ...++++++...|+.+.             ..++++|
T Consensus       160 ~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~I  239 (263)
T 1p5z_B          160 DWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTL  239 (263)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEE
T ss_pred             HHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEE
Confidence            455433322   2479999999999999999986543322   34788888888888762             1268999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhh
Q psy16874        195 DADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       195 d~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      |++++++++.++|.+.|...+.
T Consensus       240 d~~~~~eev~~~I~~~l~~~l~  261 (263)
T 1p5z_B          240 DVNEDFKDKYESLVEKVKEFLS  261 (263)
T ss_dssp             ECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999987764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.84  E-value=9.1e-21  Score=143.97  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      ++|+|+|++||||||+++.|++.++...++.+.+..+.     . .+..++                       . ....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~-----~-~~~~~~-----------------------~-~~~~   51 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK-----S-GNEKLF-----------------------E-HFNK   51 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHT-----T-CHHHHH-----------------------H-HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccch-----h-HHHHHH-----------------------H-HHHH
Confidence            47999999999999999999999875433221111000     0 000000                       1 1123


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC---CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE---GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      +..+..+++                 ||+..++.++.....   .....+...+....+.|+++|||++|++++.+|+..
T Consensus        52 l~~~~~vi~-----------------dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~  114 (173)
T 3kb2_A           52 LADEDNVII-----------------DRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRV  114 (173)
T ss_dssp             HTTCCSEEE-----------------ESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHH
T ss_pred             HHhCCCeEE-----------------eeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHh
Confidence            456777888                 999999888864321   122234333333445799999999999999999976


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDAD-KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~-~s~~~v~~~I~~~i~~~l  215 (227)
                      |++.....++++++.+.|+.....   .+++||++ .+++++.++|.+.+....
T Consensus       115 r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          115 RGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             HSCSCCCHHHHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred             cCCcchhhhHHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence            655555567888899999887654   68999999 599999999999888644

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.83  E-value=7.8e-23  Score=160.96  Aligned_cols=184  Identities=28%  Similarity=0.375  Sum_probs=131.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCc-hHHHHHHHhhc-C--CCCHHHHHHHHHhhhhhhhhH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST-GHIIDEYLRKK-I--ELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++|+|+|++||||||+++.|++.++..|+++..+++|..+.+. ++.++.++... .  ........+++.+.++.....
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   80 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence            4799999999999999999999999888888777766433333 55555554321 0  114555666777777766556


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC-----CCChhhhhccc---CCCCCCCEEEEeecCH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE-----GMDISWCFQPE---KGLPKPDAVLLFKLNE  156 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~pd~vi~L~~~~  156 (227)
                      +.+.+..+.+|++                 |||+++.++|+....     .....|+..+.   ...+.||++|||++|+
T Consensus        81 i~~~l~~g~~vi~-----------------D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~  143 (214)
T 1gtv_A           81 IQGLCRGYDVVIL-----------------DRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSA  143 (214)
T ss_dssp             HHHEEEEEEEEEE-----------------EEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEH
T ss_pred             HHHHhhCCCEEEE-----------------CCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCH
Confidence            7777778889999                 999999888765421     01124444332   2335799999999999


Q ss_pred             HHHHHhcCCCC--------CCccc-HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHH
Q psy16874        157 EALQRRKGFGD--------ERYEQ-TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKD  209 (227)
Q Consensus       157 e~~~~R~~~r~--------~~~~~-~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~  209 (227)
                      +++.+|+..|.        +.++. .++++++...|..+...    .+++||++++++++.++|.+
T Consensus       144 ~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          144 ELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             HHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred             HHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence            99999987542        22332 68889999899887642    57999999999998887754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.83  E-value=5.2e-21  Score=148.37  Aligned_cols=174  Identities=16%  Similarity=0.201  Sum_probs=108.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE   82 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (227)
                      ++++++|+|+|+|||||||+++.|++.++..+++.+. ++. +..+.+.+..+++++.++..++........       .
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-------~   78 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDML-------R   78 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHH-------H
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHH-------H
Confidence            4578899999999999999999999999765554433 221 112445677777777766555543322111       1


Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      ..+.+.+..|..+|+                 |+|...     .       .+...+......|+++|||++|++++.+|
T Consensus        79 ~~i~~~~~~~~~vi~-----------------d~~~~~-----~-------~~~~~~~~~~~~~~~vi~l~~~~e~~~~R  129 (196)
T 2c95_A           79 DAMVAKVNTSKGFLI-----------------DGYPRE-----V-------QQGEEFERRIGQPTLLLYVDAGPETMTQR  129 (196)
T ss_dssp             HHHHHHTTTCSCEEE-----------------ESCCCS-----H-------HHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHhccccCCcEEE-----------------eCCCCC-----H-------HHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            234444445666666                 854221     1       11211111124689999999999999999


Q ss_pred             cCCCC---CCcc-c-HHHHHHHHHHHHHH-------h-hCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        163 KGFGD---ERYE-Q-TDFQRKVAENYEKL-------K-DNIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       163 ~~~r~---~~~~-~-~~~~~~~~~~~~~~-------~-~~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      +..|+   ++++ . ..+.+++...+...       . ...+++||+++++++++++|.+.+...
T Consensus       130 ~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            86542   2332 2 33444554433322       1 124678999999999999999988764

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.83  E-value=4.4e-21  Score=160.12  Aligned_cols=165  Identities=17%  Similarity=0.135  Sum_probs=113.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhh-----cCCCCHH-HH-----H
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRK-----KIELPDQ-AA-----H   71 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-----~~~~~~~-~~-----~   71 (227)
                      +++++|+|+|++||||||+++.|+++++..+ .+..++||..  +...+ +.+++++.+     ...+... ..     .
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~~trEPg~~w~~~~g~e~ir~~~~d~~~~~~~~~~~~~~e~~~~~l   83 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHY   83 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccCC-cEEEEeCCCCccccccchHHHHHHHHhhhhccccccCHHHHHHHHHHH
Confidence            4689999999999999999999999998743 5777888852  24445 667777641     2334443 11     1


Q ss_pred             -HHHH---hhhhhhhhH-H-----HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhc----cCCCChhhhh
Q psy16874         72 -LLFS---ANRWEREPT-L-----TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA----KEGMDISWCF  137 (227)
Q Consensus        72 -~~~~---~~~~~~~~~-i-----~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~----~~~~~~~~~~  137 (227)
                       ++|+   +.++++++. +     .+++..|.+||+                 |||++|+.++...    ..+++...+.
T Consensus        84 QLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~-----------------DR~~~Ss~a~f~~~~yq~g~l~~~~i~  146 (334)
T 1p6x_A           84 QSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVF-----------------DRHPVASTVCFPAARYLLGDMSMCALM  146 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEE-----------------ESCTHHHHTHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEE-----------------eCChHHHHHHHHHHHHhcCCCCHHHHH
Confidence             2333   245555432 2     256667888888                 9999999874332    1245555554


Q ss_pred             cccC---CCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        138 QPEK---GLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       138 ~~~~---~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      .+..   ..+.||++|||++|++++.+|+.+|+...+  +.+|++++++.|..+..
T Consensus       147 ~l~~~~~~~~~PDLtIyLd~~pe~~l~RI~~RgR~~Eri~~eyl~~vr~~Y~~l~~  202 (334)
T 1p6x_A          147 AMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFMLVN  202 (334)
T ss_dssp             HHHTTCCCCCTTEEEEEEECCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCCCEEEEEECCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence            4332   346799999999999999999865432222  57999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.83  E-value=3.6e-22  Score=159.45  Aligned_cols=189  Identities=15%  Similarity=0.099  Sum_probs=100.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCC--CCchHHHHHHH-hhcCCCCHHHHHHHHHhhhhhh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRT--ISTGHIIDEYL-RKKIELPDQAAHLLFSANRWER   81 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   81 (227)
                      .++|.+|+|+|++||||||+++.|+..    +.++....+|...  ...+..+++.+ .....+........+...+..+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~   92 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSH   92 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHH
Confidence            356889999999999999999999886    4456666655210  11111222211 1100000000000011111111


Q ss_pred             h-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc--------CCCCCCCEEEEe
Q psy16874         82 E-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE--------KGLPKPDAVLLF  152 (227)
Q Consensus        82 ~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~pd~vi~L  152 (227)
                      . ..+.+.+..+..                 ++.|||++++.+|+..  +++..++..+.        ...+.||++|||
T Consensus        93 ~~~~i~~~l~~~r~-----------------v~~dry~~s~~ayq~~--~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~L  153 (230)
T 2vp4_A           93 TAPTNKKLKIMERS-----------------IFSARYCFVENMRRNG--SLEQGMYNTLEEWYKFIEESIHVQADLIIYL  153 (230)
T ss_dssp             HCCCCSSEEEEESC-----------------HHHHHHTHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEE
T ss_pred             HhccccCceeecCC-----------------ccccHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence            0 011112222333                 4449999999999863  55554443221        135689999999


Q ss_pred             ecCHHHHHHhcCCCCCC---cccHHHHHHHHHHHHHHhh-----C--CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        153 KLNEEALQRRKGFGDER---YEQTDFQRKVAENYEKLKD-----N--IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       153 ~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~~~~~~~~-----~--~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      ++|++++.+|+.+|+..   .++.++++++...|+++..     .  ++++||++++++++.++|.+.+...+.
T Consensus       154 d~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~  227 (230)
T 2vp4_A          154 RTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFD  227 (230)
T ss_dssp             ECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred             eCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            99999999998654322   2345899999999998853     2  589999999999999999999876654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.81  E-value=8.8e-21  Score=150.35  Aligned_cols=169  Identities=14%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ..|-..|+|+|||||||+++.|++.++..+++++. +++ ...+++.|..+++++.++..+++....           ..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~-----------~l   75 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII-----------GL   75 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------HH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHH-----------HH
Confidence            35678999999999999999999999998888754 554 223678899999999999888987766           34


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.+.+.+.              .+.+|||+|     +||++..++    ..+   ......||++|+|++|++++.+|+.
T Consensus        76 l~~~l~~~--------------~~~~g~ILD-----GfPRt~~Qa----~~L---~~~~~~~d~VI~Ldvp~e~l~~Rl~  129 (230)
T 3gmt_A           76 VKERLKEA--------------DCANGYLFD-----GFPRTIAQA----DAM---KEAGVAIDYVLEIDVPFSEIIERMS  129 (230)
T ss_dssp             HHHHHHSG--------------GGTTCEEEE-----SCCCSHHHH----HHH---HHTTCCCSEEEEECCCHHHHHHHHH
T ss_pred             HHHHHhCc--------------ccCCCeEec-----CCCCcHHHH----HHH---HHhCCCccEEEEEeCCHHHHHHHHH
Confidence            44444431              234577778     777765542    222   2334578999999999999999996


Q ss_pred             CCC---------------------------C---Ccc-cHHHH-----------HHHHHHHHHHh---------hCCeEE
Q psy16874        165 FGD---------------------------E---RYE-QTDFQ-----------RKVAENYEKLK---------DNIWID  193 (227)
Q Consensus       165 ~r~---------------------------~---~~~-~~~~~-----------~~~~~~~~~~~---------~~~~~~  193 (227)
                      .|.                           +   +.. +.+.+           ..+.+.|+...         ...++.
T Consensus       130 ~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~  209 (230)
T 3gmt_A          130 GRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRK  209 (230)
T ss_dssp             TEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEE
T ss_pred             cCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEE
Confidence            541                           0   111 12222           22233555431         025899


Q ss_pred             EcCCCCHHHHHHHHHHHHH
Q psy16874        194 IDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       194 Id~~~s~~~v~~~I~~~i~  212 (227)
                      ||+++++++|+++|.++|.
T Consensus       210 idg~~~~~eV~~~i~~~l~  228 (230)
T 3gmt_A          210 ISGLGAVEEIRARVRRAQV  228 (230)
T ss_dssp             ECC----------------
T ss_pred             EECCCCHHHHHHHHHHHHh
Confidence            9999999999999998875

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.81  E-value=1.4e-19  Score=151.30  Aligned_cols=164  Identities=14%  Similarity=0.024  Sum_probs=113.4

Q ss_pred             CCceEEEEEcCCCCcHHHHH-HHHHHHHHhCCCCeEEeeCCCCC--CCch-HHHHHHHhh-----cCCCCHH------HH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQA-KKLVDYLNKNNIPSQFVNFPDRT--ISTG-HIIDEYLRK-----KIELPDQ------AA   70 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~-~~L~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-----~~~~~~~------~~   70 (227)
                      .++++|+|+|++||||||++ +.|++.++..+ .+..++||...  ...+ +.++.++..     ...+...      ..
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g-~vv~trEPgg~w~t~~g~e~lr~i~l~~~~~~~~~~s~~~a~~~~~e   88 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN-RILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAH   88 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG-GEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCccccCcccHHHHHHHHhchhhhcccccchhhhhHHHHH
Confidence            56789999999999999999 99999988766 37779998521  4556 677777753     3344543      33


Q ss_pred             HHHHHhhhhhhhh-HHH------------HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc----CCCCh
Q psy16874         71 HLLFSANRWEREP-TLT------------KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK----EGMDI  133 (227)
Q Consensus        71 ~~~~~~~~~~~~~-~i~------------~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~----~~~~~  133 (227)
                      .+++.+.+..+.. .+.            +.+..+.+||+                 |||++|+.++....    .+++.
T Consensus        89 ~ql~fa~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~-----------------DR~~~Ss~a~f~~~r~~~g~l~~  151 (341)
T 1osn_A           89 FQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLS-----------------DRHPIASTICFPLSRYLVGDMSP  151 (341)
T ss_dssp             HHHHTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEE-----------------ESCTHHHHTHHHHHHHHHTSSCG
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhccccccccCCCCeEEE-----------------eCCccHHHHHHHhhhhhcCCCCH
Confidence            3344433333322 222            23456677888                 99999998776543    35655


Q ss_pred             hhhhccc---CCCCCCCEEEEeecCHHHHHHhcCCCC---CCcccHHHHHHHHHHHHHHhh
Q psy16874        134 SWCFQPE---KGLPKPDAVLLFKLNEEALQRRKGFGD---ERYEQTDFQRKVAENYEKLKD  188 (227)
Q Consensus       134 ~~~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~---~~~~~~~~~~~~~~~~~~~~~  188 (227)
                      ..+..+.   .....||++|||++|+++..+|+.+|+   +.++ .+|++++++.|..+..
T Consensus       152 ~~~~~L~~~~~~~~~PDltI~Ld~~pe~~l~RI~~RgR~~Erie-~~yl~rvr~~Y~~l~~  211 (341)
T 1osn_A          152 AALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVN-LPFVMVLRNVYIMLIN  211 (341)
T ss_dssp             GGHHHHHTTCCCCCSCCEEEEEECCHHHHHHHCC------CCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcCCCCCeEEEEeCCHHHHHHHHHhhCCCcccCC-HHHHHHHHHHHHHHHH
Confidence            5554433   344579999999999999999997664   3333 7999999999988865

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=140.54  Aligned_cols=174  Identities=13%  Similarity=0.145  Sum_probs=108.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +.+++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.+..+++++.++...+........       .+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-------~~   82 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELL-------KE   82 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHH-------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHH-------HH
Confidence            346799999999999999999999999765544433 121 112344566677777766655554322111       12


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+.+.+..+..+|+                 |++..+....         ..+   ....+.||++|||++|++++.+|+
T Consensus        83 ~i~~~~~~~~~vi~-----------------dg~~~~~~~~---------~~l---~~~~~~~~~~i~l~~~~~~~~~R~  133 (199)
T 2bwj_A           83 AMVASLGDTRGFLI-----------------DGYPREVKQG---------EEF---GRRIGDPQLVICMDCSADTMTNRL  133 (199)
T ss_dssp             HHHHHTTSCSCEEE-----------------ETCCSSHHHH---------HHH---HHHTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHhcccccCccEEE-----------------eCCCCCHHHH---------HHH---HHhcCCCCEEEEEECCHHHHHHHH
Confidence            33444445666777                 8654432110         111   112236899999999999999999


Q ss_pred             CCCCC---Cccc--HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        164 GFGDE---RYEQ--TDFQRKVAENYEKLK------D--NIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       164 ~~r~~---~~~~--~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      ..|..   ..++  ..+.+++...+....      .  ..+++||+++++++++++|.+.+...+
T Consensus       134 ~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~  198 (199)
T 2bwj_A          134 LQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF  198 (199)
T ss_dssp             HHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            76532   2222  344455444333221      1  145899999999999999999887653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.80  E-value=2.7e-19  Score=143.94  Aligned_cols=173  Identities=16%  Similarity=0.163  Sum_probs=112.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      ++|++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++.++..+++....           .
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~   95 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL-----------S   95 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHH-----------H
Confidence            568999999999999999999999999776666644 443 233667788888888888877775544           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+...+...              ..++++|+|.     +++...+.    ..+.. +......||.+|+|++|++++.+|
T Consensus        96 ~~~~~l~~~--------------~~~~~~ildg-----~p~~~~q~----~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R  152 (243)
T 3tlx_A           96 LVDEKLKTP--------------QCKKGFILDG-----YPRNVKQA----EDLNKLLQKNQTKLDGVFYFNVPDEVLVNR  152 (243)
T ss_dssp             HHHHHTTSG--------------GGSSEEEEES-----CCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             HHHHHHhcc--------------cccCCEEecC-----CCCcHHHH----HHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence            333333321              1234455584     44333221    12211 122334789999999999999999


Q ss_pred             cCCCCC------------------------------Cc-cc-HHHHHHHHHHHHHHh------h--CCeEEEcCCCCHHH
Q psy16874        163 KGFGDE------------------------------RY-EQ-TDFQRKVAENYEKLK------D--NIWIDIDADKDIDT  202 (227)
Q Consensus       163 ~~~r~~------------------------------~~-~~-~~~~~~~~~~~~~~~------~--~~~~~Id~~~s~~~  202 (227)
                      +..|..                              +. .+ ....+++...++...      .  ..++.||+++++++
T Consensus       153 l~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~  232 (243)
T 3tlx_A          153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPAND  232 (243)
T ss_dssp             HHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHH
T ss_pred             HHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence            975420                              00 12 233344443333221      1  15889999999999


Q ss_pred             HHHHHHHHHH
Q psy16874        203 LGLIVKDIVI  212 (227)
Q Consensus       203 v~~~I~~~i~  212 (227)
                      |+++|.++|.
T Consensus       233 v~~~i~~~l~  242 (243)
T 3tlx_A          233 LEKKISQHID  242 (243)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.79  E-value=7.6e-21  Score=152.68  Aligned_cols=192  Identities=13%  Similarity=0.109  Sum_probs=109.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCC--------------CchH-HHHHHHhhcCCCCHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTI--------------STGH-IIDEYLRKKIELPDQAAH   71 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~   71 (227)
                      +|++|+|+|++||||||+++.|++.++.    +..+.+|....              ..+. .+..++.++.. ......
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~----~~~~~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   75 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE----WHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPAR-WSYTFQ   75 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT----SEEECCCGGGTSCCC------------CCCHHHHHHHSHHH-HHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCC----CeeeecchhhhccccccccccccccccCCchHHHHHhCccc-chhHHH
Confidence            4789999999999999999999998852    23455553211              0121 22333322110 000111


Q ss_pred             HHHHhhhhhhh-hHHHHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC-C----CChhhhhcccCCC-
Q psy16874         72 LLFSANRWERE-PTLTKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE-G----MDISWCFQPEKGL-  143 (227)
Q Consensus        72 ~~~~~~~~~~~-~~i~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~-~----~~~~~~~~~~~~~-  143 (227)
                      ..+...++... ......+ .....++.          .+..++.|||+++..+|+.... +    ....|+..+.... 
T Consensus        76 ~~~ll~r~~~~~~~~~~~~~~~~~~~l~----------~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~  145 (241)
T 2ocp_A           76 TFSFLSRLKVQLEPFPEKLLQARKPVQI----------FERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFA  145 (241)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHSCSSCEEE----------EESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCceEe----------eeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            11111111110 0000000 00111111          2334455999999888765431 1    1123343332222 


Q ss_pred             --CCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhh-------------CCeEEEcCCCCHHHHHH
Q psy16874        144 --PKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKD-------------NIWIDIDADKDIDTLGL  205 (227)
Q Consensus       144 --~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~Id~~~s~~~v~~  205 (227)
                        +.||++|||++|++++.+|+..|+...+   ..++++++...|+.+..             .++++||++++++++.+
T Consensus       146 ~~~~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~  225 (241)
T 2ocp_A          146 SRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVT  225 (241)
T ss_dssp             HHHCCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHH
T ss_pred             cccCCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHH
Confidence              3799999999999999999866543333   37899999999998642             27999999999888766


Q ss_pred             HHHHHHHH
Q psy16874        206 IVKDIVID  213 (227)
Q Consensus       206 ~I~~~i~~  213 (227)
                      .+..++..
T Consensus       226 ~i~~i~~~  233 (241)
T 2ocp_A          226 KQEDLMRE  233 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665553

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.79  E-value=3.2e-19  Score=141.36  Aligned_cols=177  Identities=18%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +++++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.|..+++++.++...++.....+.. .+     
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~-~~-----   76 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVK-ER-----   76 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHH-HH-----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHH-HH-----
Confidence            457889999999999999999999999987777644 332 2224556777888887776666644332111 11     


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      ...+....+. +|+                 |     ++++..       ..+..+......||++|||++|++++.+|+
T Consensus        77 ~~~~~~~~~~-~vi-----------------d-----g~~~~~-------~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~  126 (222)
T 1zak_A           77 LRQPDAQENG-WLL-----------------D-----GYPRSY-------SQAMALETLEIRPDTFILLDVPDELLVERV  126 (222)
T ss_dssp             HHSHHHHHTC-EEE-----------------E-----SCCCSH-------HHHHHHHTTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HhhccccCCc-EEE-----------------E-----CCCCCH-------HHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence            1111122232 223                 6     333221       111222233457899999999999999998


Q ss_pred             CCCCC----------------------Ccc-----c-HHHHHHHHHHHH---HHhh---CCeEEEcCCCCHHHHHHHHHH
Q psy16874        164 GFGDE----------------------RYE-----Q-TDFQRKVAENYE---KLKD---NIWIDIDADKDIDTLGLIVKD  209 (227)
Q Consensus       164 ~~r~~----------------------~~~-----~-~~~~~~~~~~~~---~~~~---~~~~~Id~~~s~~~v~~~I~~  209 (227)
                      ..|..                      .+.     . .....++...|.   .+..   ..+++||+++++++++++|.+
T Consensus       127 ~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~  206 (222)
T 1zak_A          127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDE  206 (222)
T ss_dssp             TTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHH
T ss_pred             HcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHH
Confidence            65320                      111     1 223334444444   2221   258899999999999999999


Q ss_pred             HHHHHhhhc
Q psy16874        210 IVIDTIKKS  218 (227)
Q Consensus       210 ~i~~~l~~~  218 (227)
                      .|...+.+.
T Consensus       207 ~l~~~l~~~  215 (222)
T 1zak_A          207 LLGSILEKK  215 (222)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhhcccc
Confidence            998877653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.79  E-value=1.1e-17  Score=129.09  Aligned_cols=166  Identities=13%  Similarity=0.084  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHH-hhc--------CCCCHH--HHHHHHHhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYL-RKK--------IELPDQ--AAHLLFSAN   77 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~--~~~~~~~~~   77 (227)
                      ++|+|+|+|||||||+++.|++.++..++++.++.       .++.+.+.. ..+        ..+...  ...+.+++ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN-------YGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAA-   73 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE-------HHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE-------CChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHH-
Confidence            57999999999999999999999998888876663       123332222 111        112222  22222222 


Q ss_pred             hhhhhhHHHHHH--HcCCEEEEecccccccccCCCCCCCCcccchhhhhh-hccCCCChhhhhcccCCCCCCCEEEEeec
Q psy16874         78 RWEREPTLTKLI--EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS-AAKEGMDISWCFQPEKGLPKPDAVLLFKL  154 (227)
Q Consensus        78 ~~~~~~~i~~~~--~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pd~vi~L~~  154 (227)
                           ..+.+.+  ..+..||+                 |+|  +...++ ....+++..++..+     .|+++|||++
T Consensus        74 -----~~i~~~l~~~~~~~vi~-----------------d~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~  124 (194)
T 1nks_A           74 -----KGIAEEARAGGEGYLFI-----------------DTH--AVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEA  124 (194)
T ss_dssp             -----HHHHHHHHHTCSSEEEE-----------------EEC--SEEEETTEEEESSCHHHHHHH-----CCSEEEEEEC
T ss_pred             -----HHHHHHhhccCCCEEEE-----------------CCc--hhhccccccccCCCHHHHHhc-----CCCEEEEEeC
Confidence                 2355555  67888888                 987  222332 11123444555431     4899999999


Q ss_pred             CHHHHHHh-cCC--CC--CCcc--cHHHHHHHHHHHHHHhh----CCeEEE-cCCCCHHHHHHHHHHHH
Q psy16874        155 NEEALQRR-KGF--GD--ERYE--QTDFQRKVAENYEKLKD----NIWIDI-DADKDIDTLGLIVKDIV  211 (227)
Q Consensus       155 ~~e~~~~R-~~~--r~--~~~~--~~~~~~~~~~~~~~~~~----~~~~~I-d~~~s~~~v~~~I~~~i  211 (227)
                      |++++.+| +..  |+  +...  ..++.+++...|.....    ..+++| |+++++++++++|.+.|
T Consensus       125 ~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          125 DPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             CHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            99998866 654  43  2222  23556677777766642    267899 99999999999988765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.79  E-value=7.7e-19  Score=136.81  Aligned_cols=176  Identities=14%  Similarity=0.148  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      ++|+|+|++||||||+++.|++.++.     ..+.+|..+...   ++.++.++..+ .......+.+.+...   +.+.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~-----~~~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~r~~~---~~~~   68 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGY-----EIFKEPVEENPY---FEQYYKDLKKT-VFKMQIYMLTARSKQ---LKQA   68 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCC-----EEECCCGGGCTT---HHHHTTCHHHH-HHHHHHHHHHHHHHH---HC--
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCC-----cEEcccccccHH---HHHHHhCcccc-chhHHHHHHHHHHHH---HHHh
Confidence            47999999999999999999999875     233444322221   33333221111 111112233333322   2333


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhc----cCCCCh--h----hhhcccCC-------CCCCCEEEE
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA----KEGMDI--S----WCFQPEKG-------LPKPDAVLL  151 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~----~~~~~~--~----~~~~~~~~-------~~~pd~vi~  151 (227)
                      +..+. +++                 |||+.++.++...    +...+.  .    ++..+...       ...||++||
T Consensus        69 ~~~~~-vi~-----------------d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~  130 (205)
T 2jaq_A           69 KNLEN-IIF-----------------DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIY  130 (205)
T ss_dssp             ----C-EEE-----------------ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEE
T ss_pred             hccCC-EEE-----------------EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEE
Confidence            34444 677                 9999987777653    111111  1    11111111       257999999


Q ss_pred             eecCHHHHHHhcCCCCCCccc---HHHHHHHHHHHHHHh-----hCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        152 FKLNEEALQRRKGFGDERYEQ---TDFQRKVAENYEKLK-----DNIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       152 L~~~~e~~~~R~~~r~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      |++|++++.+|+..|+...+.   .++.+++...|..+.     ....++||++++++++.++|.+.+...
T Consensus       131 L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          131 LRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             EECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             EeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            999999999999765433332   366677777776532     226899999999999999999888653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.79  E-value=2.1e-19  Score=142.68  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      ++|+|+|+|||||||+++.|++.++..+++++. ++++ ..+.+.+..+++++.++...+.....           ..+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~i~   69 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI-----------PMVL   69 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHH-----------HHHH
Confidence            479999999999999999999998653333322 2544 22456777788888776655554332           3455


Q ss_pred             HHHHc--CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         87 KLIEQ--GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        87 ~~~~~--~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      +.+..  +..+|+                 |.     +++...+    ..++..+ ......||++|||++|++++.+|+
T Consensus        70 ~~l~~~~g~~vIl-----------------Dg-----~~~~~~~----~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl  123 (223)
T 2xb4_A           70 ETLESKGKDGWLL-----------------DG-----FPRNTVQ----AQKLFEALQEKGMKINFVIEILLPREVAKNRI  123 (223)
T ss_dssp             HHHHHHCTTCEEE-----------------ES-----CCCSHHH----HHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             HHHhcccCCeEEE-----------------eC-----CcCCHHH----HHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            55554  666666                 83     3322111    0222222 122347999999999999999998


Q ss_pred             CCCC---C-------------------------Ccc-----cHH--HHHHH----------HH---HHHHHhh---CCeE
Q psy16874        164 GFGD---E-------------------------RYE-----QTD--FQRKV----------AE---NYEKLKD---NIWI  192 (227)
Q Consensus       164 ~~r~---~-------------------------~~~-----~~~--~~~~~----------~~---~~~~~~~---~~~~  192 (227)
                      ..|+   +                         .++     +.+  ..+++          .+   .|..+..   ..++
T Consensus       124 ~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~  203 (223)
T 2xb4_A          124 MGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYI  203 (223)
T ss_dssp             HTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEE
T ss_pred             HcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEE
Confidence            6553   1                         111     112  12222          44   5655432   2589


Q ss_pred             EEcCCCCHHHHHHHHHHHH
Q psy16874        193 DIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       193 ~Id~~~s~~~v~~~I~~~i  211 (227)
                      +||+++++++|+++|.+.|
T Consensus       204 ~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          204 ELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             EEETTSCHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHh
Confidence            9999999999999998876

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.78  E-value=4.2e-19  Score=147.98  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=105.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhhc-----CCCCHH-H-----HH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRKK-----IELPDQ-A-----AH   71 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~-----~~~~~~-~-----~~   71 (227)
                      +.+++|+|+|++||||||+++.|++++...+  +..++||..  ....+ +.+++++.++     ..+... .     ..
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~g--v~~trEPg~~w~~~~g~~~Lr~~yld~~r~~~~~~~~~ea~lf~~~~   79 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSA   79 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCcccccccHHHHHHHHhChhhhccccCCHHHHHHHHHHH
Confidence            5689999999999999999999999998766  777888852  11223 5777777542     234444 1     22


Q ss_pred             HHHHhhhh----hhhh-HHHHH------HHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhhcc---CCCChhhh
Q psy16874         72 LLFSANRW----EREP-TLTKL------IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSAAK---EGMDISWC  136 (227)
Q Consensus        72 ~~~~~~~~----~~~~-~i~~~------~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~~~---~~~~~~~~  136 (227)
                      +++++.++    ++.. .+.+.      +..|.+||+                 |||++|+. +|+...   .+++...+
T Consensus        80 qL~fa~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~-----------------DR~~~Ss~~~yq~~~~~~g~l~~~~~  142 (331)
T 1e2k_A           80 QITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF-----------------DRHPIAALLCYPAARYLMGSMTPQAV  142 (331)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEE-----------------ECCHHHHHTHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHhHHhhccccccCCCEEEE-----------------ecCchHhHHHHHHHHHhcCCCCHHHH
Confidence            33444332    2221 12222      246778888                 99999997 576431   35555444


Q ss_pred             hccc---CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        137 FQPE---KGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       137 ~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      ..+.   .....||+++++++|++++.+|+.+|+...+  +.+|++++++.|..+..
T Consensus       143 ~~l~~~~~~~~ppdlt~lldl~pe~~l~RI~~Rgr~~Eri~~~yl~rvr~~Y~~l~~  199 (331)
T 1e2k_A          143 LAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN  199 (331)
T ss_dssp             HHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCeEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence            3332   2234568999999999999999865532222  58999999999988754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.78  E-value=9.4e-19  Score=135.07  Aligned_cols=174  Identities=17%  Similarity=0.220  Sum_probs=106.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      |..  +.+++|+|+|+|||||||+++.|++.++..+++++. ++. +..+.+.+..+.+++..+...+.....       
T Consensus         1 m~~--~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-------   71 (194)
T 1qf9_A            1 MEK--SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV-------   71 (194)
T ss_dssp             CCC--CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHH-------
T ss_pred             CCC--CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-------
Confidence            555  346799999999999999999999999765555433 222 213556677777777766554443322       


Q ss_pred             hhhhhHHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCH
Q psy16874         79 WEREPTLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNE  156 (227)
Q Consensus        79 ~~~~~~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~  156 (227)
                          ..+...+.  .+..+++                 |+|..+...+.        .|. ........||++|||++|+
T Consensus        72 ----~~l~~~i~~~~~~~vi~-----------------d~~~~~~~~~~--------~~~-~~~~~~~~~~~vi~l~~~~  121 (194)
T 1qf9_A           72 ----KLLKNAIDANQGKNFLV-----------------DGFPRNEENNN--------SWE-ENMKDFVDTKFVLFFDCPE  121 (194)
T ss_dssp             ----HHHHHHHHTSTTCCEEE-----------------ETCCCSHHHHH--------HHH-HHHTTTCEEEEEEEEECCH
T ss_pred             ----HHHHHHHHhcCCCCEEE-----------------eCcCCCHHHHH--------HHH-HHHhccCCCCEEEEEECCH
Confidence                12222221  3455666                 85543321111        111 1112223688999999999


Q ss_pred             HHHHHhcCCCC---CCcc--cHHHHHHHHHHH-------HHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        157 EALQRRKGFGD---ERYE--QTDFQRKVAENY-------EKLKDN-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       157 e~~~~R~~~r~---~~~~--~~~~~~~~~~~~-------~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      +++.+|+..|.   .+.+  ...+.+++...+       +.+... .+++||+++++++++++|.+.+.+
T Consensus       122 e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          122 EVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99999986542   1222  234444554432       122112 568999999999999999988864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.78  E-value=3.3e-18  Score=132.21  Aligned_cols=176  Identities=18%  Similarity=0.193  Sum_probs=104.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC---CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF---PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE   82 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (227)
                      +|++|+|+|+|||||||+++.|++.++..+++.+. ++.   + .+...+..+++++.++...+.......+..    .+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~----~~   76 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN-PDSQYGELIEKYIKEGKIVPVEITISLLKR----EM   76 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC-TTSTTHHHHHHHHHTTCCCCHHHHHHHHHH----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc-cCChHHHHHHHHHHCCCcCCHHHHHHHHHH----HH
Confidence            47899999999999999999999998765544432 111   2 245567777777776655555433321111    01


Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      ......+..+..+|+                 |++..+...+.        .|...+ ...+.||++|||++|++++.+|
T Consensus        77 ~~~~~~~~~~~~vi~-----------------dg~~~~~~~~~--------~~~~~~-~~~~~~~~~i~l~~~~e~~~~R  130 (196)
T 1tev_A           77 DQTMAANAQKNKFLI-----------------DGFPRNQDNLQ--------GWNKTM-DGKADVSFVLFFDCNNEICIER  130 (196)
T ss_dssp             HHHHHHCTTCCEEEE-----------------ESCCCSHHHHH--------HHHHHH-TTTCEEEEEEEEECCHHHHHHH
T ss_pred             HhhhccccCCCeEEE-----------------eCCCCCHHHHH--------HHHHHh-cccCCCCEEEEEECCHHHHHHH
Confidence            111122334667777                 86655432221        122111 2234688999999999999999


Q ss_pred             cCCCC---CCcc-cHHHHHHHHHHHHHH--------hh-CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        163 KGFGD---ERYE-QTDFQRKVAENYEKL--------KD-NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       163 ~~~r~---~~~~-~~~~~~~~~~~~~~~--------~~-~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      +..|.   ++.. +.+.+......|...        .. ..+++||+++++++++++|.+.+.+
T Consensus       131 ~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          131 CLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            85432   1221 222222222222111        11 2577999999999999999988864

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=99.78  E-value=5.1e-19  Score=149.27  Aligned_cols=165  Identities=16%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC--CCCch-HHHHHHHhh-----cCCCCHH-H-----H
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR--TISTG-HIIDEYLRK-----KIELPDQ-A-----A   70 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-----~~~~~~~-~-----~   70 (227)
                      +.++++|+|+|++||||||+++.|++.|...+  +..++||..  ....+ +.+++++.+     ...+... .     .
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g--vv~trEPg~~w~~~~gn~~Lr~~yld~~r~~~~~~~~~ea~l~~a~  123 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDD--IVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTS  123 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC----CC--EEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhhhCC--EEEEeCCCCccccccchHHHHHHHhChhhhccccCCHHHHHHHHHH
Confidence            35688999999999999999999999998766  777888842  11123 567777754     2334444 2     2


Q ss_pred             HHHHHhhh----hhhhh-HHH------HHHHcCCEEEEecccccccccCCCCCCCCcccchhh-hhhhcc---CCCChhh
Q psy16874         71 HLLFSANR----WEREP-TLT------KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV-AFSAAK---EGMDISW  135 (227)
Q Consensus        71 ~~~~~~~~----~~~~~-~i~------~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~-~~~~~~---~~~~~~~  135 (227)
                      .+++++.+    +.+.+ .+.      +.+..|.+||+                 |||++|+. +|+...   .+++...
T Consensus       124 ~QL~fa~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~-----------------DR~~~Ss~~ayq~~~y~~g~l~~~~  186 (376)
T 1of1_A          124 AQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF-----------------DRHPIAALLCYPAARYLMGSMTPQA  186 (376)
T ss_dssp             HHHHHHHHHHHHHHHHGGGEEEEC-----CCCSEEEEE-----------------ECCHHHHHTHHHHHHHHTTSSCHHH
T ss_pred             HHHHHhccchHHHHHHHHHhhhhhcccccccCCCeEEE-----------------eeChhHHHHHHHHHHHhcCCCCHHH
Confidence            22333333    22221 222      22456788888                 99999987 566431   3555554


Q ss_pred             hhccc---CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        136 CFQPE---KGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       136 ~~~~~---~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      +..+.   .....||+++++++|++++.+|+.+|+...+  +.+|++++++.|..+..
T Consensus       187 i~~l~~~~~~~~ppdlt~Lldl~pe~~l~RI~~RgR~~Eri~leyl~rVr~~Y~~la~  244 (376)
T 1of1_A          187 VLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN  244 (376)
T ss_dssp             HHHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCeEEEEecCCHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence            44332   2234568899999999999999865532222  58999999999988754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.78  E-value=5.7e-19  Score=137.88  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=104.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC--CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF--PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE   82 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (227)
                      +++++|+|+|++||||||+++.|++.++..+++++. ++.  ...+...++.++.++.++...+........       .
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l-------~   85 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALL-------R   85 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHH-------H
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHH-------H
Confidence            457799999999999999999999988664444432 221  112566777788877766554443322111       1


Q ss_pred             hHHHHHHHcC-CEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         83 PTLTKLIEQG-ITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        83 ~~i~~~~~~~-~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                      +.+.+.+..| ..+++                 |     ++++....     ...  +......||++|||++|++++.+
T Consensus        86 ~~i~~~l~~g~~~~i~-----------------d-----g~~~~~~~-----~~~--~~~~~~~~~~~i~l~~~~e~~~~  136 (203)
T 1ukz_A           86 NAISDNVKANKHKFLI-----------------D-----GFPRKMDQ-----AIS--FERDIVESKFILFFDCPEDIMLE  136 (203)
T ss_dssp             HHHHHHHHTTCCEEEE-----------------E-----TCCCSHHH-----HHH--HHHHTCCCSEEEEEECCHHHHHH
T ss_pred             HHHHhhhccCCCeEEE-----------------e-----CCCCCHHH-----HHH--HHHhcCCCCEEEEEECCHHHHHH
Confidence            2444555555 34555                 6     44432221     111  11112358999999999999999


Q ss_pred             hcCCCC---CCc-ccHH-HHHHHHHHH-------HHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        162 RKGFGD---ERY-EQTD-FQRKVAENY-------EKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       162 R~~~r~---~~~-~~~~-~~~~~~~~~-------~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      |+..|+   +.. .+.+ ..+++...+       +.+... .+++||+++++++++++|.+.+...
T Consensus       137 Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          137 RLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            986542   111 1222 222222211       112222 5678999999999999999988754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.77  E-value=9.2e-19  Score=136.62  Aligned_cols=169  Identities=18%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      ..|++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++..+...+......           
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~-----------   86 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNE-----------   86 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHH-----------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHH-----------
Confidence            457899999999999999999999999765544422 232 1124455667777777666555543321           


Q ss_pred             HHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHH
Q psy16874         84 TLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        84 ~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~  159 (227)
                      .+...+   ..+..+|+                 |.|..     ...+.    .++.. +......||++|+|++|++++
T Consensus        87 ~~~~~~~~~~~~~~vIl-----------------dg~~~-----~~~~~----~~l~~~l~~~~~~~~~vi~l~~~~e~~  140 (201)
T 2cdn_A           87 LVDDRLNNPDAANGFIL-----------------DGYPR-----SVEQA----KALHEMLERRGTDIDAVLEFRVSEEVL  140 (201)
T ss_dssp             HHHHHTTSGGGTTCEEE-----------------ESCCC-----SHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             HHHHHHhcccCCCeEEE-----------------ECCCC-----CHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            111111   12223444                 84322     21110    11211 112234689999999999999


Q ss_pred             HHhcCCCCCCcccHHHH-HHHHHHHHH------HhhCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        160 QRRKGFGDERYEQTDFQ-RKVAENYEK------LKDNIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       160 ~~R~~~r~~~~~~~~~~-~~~~~~~~~------~~~~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .+|+..|+..-.+.+.+ +++...+..      .....+++||+++++++++++|.+.|
T Consensus       141 ~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          141 LERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence            99997543211223333 333333322      11226889999999999999988765

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.77  E-value=2.8e-19  Score=137.64  Aligned_cols=167  Identities=17%  Similarity=0.179  Sum_probs=102.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+|++|+|+|+|||||||+++.|++.++..+++++. ++.. ..+.+.+..+++++.++...+.....           .
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~   70 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL-----------E   70 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHH-----------H
Confidence            468999999999999999999999999766655533 2221 12445566777777766555554433           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+.+.+..+  +++                 |+|....     .+.    ..+.. +......||++|||++|++++.+|
T Consensus        71 ~~~~~l~~~--~i~-----------------dg~~~~~-----~~~----~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R  122 (186)
T 3cm0_A           71 LIREELAER--VIF-----------------DGFPRTL-----AQA----EALDRLLSETGTRLLGVVLVEVPEEELVRR  122 (186)
T ss_dssp             HHHHHCCSE--EEE-----------------ESCCCSH-----HHH----HHHHHHHHHTTEEEEEEEEEECCHHHHHHH
T ss_pred             HHHHHhcCC--EEE-----------------eCCCCCH-----HHH----HHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence            333333333  555                 7543321     110    11111 111223578999999999999999


Q ss_pred             cCCCC---CCcc-c-HHHHHHHHHHHHH-------HhhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        163 KGFGD---ERYE-Q-TDFQRKVAENYEK-------LKDN-IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       163 ~~~r~---~~~~-~-~~~~~~~~~~~~~-------~~~~-~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      +..|.   ++.+ + ..+.+++...+..       +... .+++||+++++++++++|.+.+
T Consensus       123 ~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          123 ILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence            86542   2222 2 3333444433222       1111 4889999999999999998776

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.77  E-value=7.2e-19  Score=140.48  Aligned_cols=173  Identities=19%  Similarity=0.175  Sum_probs=105.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++++|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++....           ..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~   83 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL-----------EL   83 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH-----------HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHH-----------HH
Confidence            46789999999999999999999999764444322 2220 11345567777777776666665443           23


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      +.+.+...              ..++|+|+|+|..+     ..+.    ..+..+ ......||++|||++|++++.+|+
T Consensus        84 i~~~l~~~--------------~~~~g~ildg~~~~-----~~~~----~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl  140 (233)
T 1ak2_A           84 IEKNLETP--------------PCKNGFLLDGFPRT-----VRQA----EMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI  140 (233)
T ss_dssp             HHHHHTSG--------------GGTTCEEEESCCCS-----HHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred             HHHHHhcc--------------cccCcEEEeCCCCC-----HHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            33333321              12344555965332     1110    112111 112346899999999999999998


Q ss_pred             CCCC--------------------------C----Cccc--HHHHHHHHHHHHHH-------hh--CCeEEEcCCCCHHH
Q psy16874        164 GFGD--------------------------E----RYEQ--TDFQRKVAENYEKL-------KD--NIWIDIDADKDIDT  202 (227)
Q Consensus       164 ~~r~--------------------------~----~~~~--~~~~~~~~~~~~~~-------~~--~~~~~Id~~~s~~~  202 (227)
                      ..|.                          .    +.++  ..+.+++. .|...       ..  ..+++||+++++++
T Consensus       141 ~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~-~y~~~~~~~~~~y~~~~~~~~id~~~~~~~  219 (233)
T 1ak2_A          141 TGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLE-AYHTQTTPLVEYYSKRGIHSAIDASQTPDV  219 (233)
T ss_dssp             HTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHH-HHHHHHHHHHHHHHHTTCEEEEETTSCHHH
T ss_pred             HcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHH
Confidence            6541                          1    1111  23334443 33321       11  25899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy16874        203 LGLIVKDIVIDT  214 (227)
Q Consensus       203 v~~~I~~~i~~~  214 (227)
                      |+++|.+.|...
T Consensus       220 v~~~I~~~l~~~  231 (233)
T 1ak2_A          220 VFASILAAFSKA  231 (233)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.77  E-value=4.8e-19  Score=140.04  Aligned_cols=170  Identities=13%  Similarity=0.103  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-ee--CCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VN--FPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      ++++|+|+|+|||||||+++.|++.++..+++++. ++  .+. +++.+..+++++.++..+++....           .
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~-~t~~g~~i~~~~~~g~~~~~~~~~-----------~   71 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKN-GTKIGLEAKSIIESGNFVGDEIVL-----------G   71 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-C--CCHHHHHHHHHTCCCCHHHHH-----------H
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHc-CCHHHHHHHHHHHCCCcCCHHHHH-----------H
Confidence            46789999999999999999999999765544422 22  122 456677888888777666665443           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+.+.+..              ...++|+|+|     ++++...+    ..++..+ ......||++|||++|++++.+|
T Consensus        72 ~i~~~l~~--------------~~~~~~~i~d-----g~~~~~~~----~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R  128 (217)
T 3be4_A           72 LVKEKFDL--------------GVCVNGFVLD-----GFPRTIPQ----AEGLAKILSEIGDSLTSVIYFEIDDSEIIER  128 (217)
T ss_dssp             HHHHHHHT--------------TTTTTCEEEE-----SCCCSHHH----HHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             HHHHHHhc--------------cccCCCEEEe-----CCCCCHHH----HHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            33333332              0123344448     44433221    1223221 12234789999999999999999


Q ss_pred             cCCCC--------------------------CCcc--cHHHHHHHHH---HHHHH-------hh--CCeEEEcCCCCHHH
Q psy16874        163 KGFGD--------------------------ERYE--QTDFQRKVAE---NYEKL-------KD--NIWIDIDADKDIDT  202 (227)
Q Consensus       163 ~~~r~--------------------------~~~~--~~~~~~~~~~---~~~~~-------~~--~~~~~Id~~~s~~~  202 (227)
                      +..|.                          +.+.  ..++.+.+.+   .|...       ..  ..++.||+++++++
T Consensus       129 l~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~  208 (217)
T 3be4_A          129 ISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKE  208 (217)
T ss_dssp             HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHH
T ss_pred             HHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHH
Confidence            86542                          1121  1222222222   22111       21  26889999999999


Q ss_pred             HHHHHHHHH
Q psy16874        203 LGLIVKDIV  211 (227)
Q Consensus       203 v~~~I~~~i  211 (227)
                      |+++|.+.|
T Consensus       209 v~~~i~~~l  217 (217)
T 3be4_A          209 VTEQIKKIL  217 (217)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999988753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.76  E-value=1e-18  Score=138.30  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +++++|+|+|+|||||||+++.|++.++..+++++. +++ ...+.+.+..+++++..+...++.....           
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~-----------   70 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVN-----------   70 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHH-----------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHH-----------
Confidence            457899999999999999999999999765544422 232 1124566777888888776666654432           


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc-cCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP-EKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+.+.+...             ...++++|+|+|..     ...+.    ..+..+ ......||++|||++|++++.+|
T Consensus        71 ~l~~~l~~~-------------~~~~~~~i~dg~~~-----~~~~~----~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R  128 (220)
T 1aky_A           71 MIKDELTNN-------------PACKNGFILDGFPR-----TIPQA----EKLDQMLKEQGTPLEKAIELKVDDELLVAR  128 (220)
T ss_dssp             HHHHHHHHC-------------GGGGSCEEEESCCC-----SHHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             HHHHHHHhc-------------cccCCCeEEeCCCC-----CHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            222222200             01223344485432     21110    111111 12234789999999999999999


Q ss_pred             cCCCC---------------------------C---Cccc--HHHHHHHHHHHHHH-------h--hCCeEEEcCCCCHH
Q psy16874        163 KGFGD---------------------------E---RYEQ--TDFQRKVAENYEKL-------K--DNIWIDIDADKDID  201 (227)
Q Consensus       163 ~~~r~---------------------------~---~~~~--~~~~~~~~~~~~~~-------~--~~~~~~Id~~~s~~  201 (227)
                      +..|.                           +   +.++  ..+.+++. .|...       .  ...++.||++++++
T Consensus       129 ~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~-~~~~~~~~l~~~y~~~~~~~~id~~~~~~  207 (220)
T 1aky_A          129 ITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLA-AYHAQTEPIVDFYKKTGIWAGVDASQPPA  207 (220)
T ss_dssp             HHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHH-HHHHHTTHHHHHHHHHTCEEEEETTSCHH
T ss_pred             HhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEECCCCHH
Confidence            85431                           0   1111  23344443 33322       1  12689999999999


Q ss_pred             HHHHHHHHHHH
Q psy16874        202 TLGLIVKDIVI  212 (227)
Q Consensus       202 ~v~~~I~~~i~  212 (227)
                      +|+++|.+.|.
T Consensus       208 ~v~~~i~~~l~  218 (220)
T 1aky_A          208 TVWADILNKLG  218 (220)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988774

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.76  E-value=1.7e-18  Score=136.49  Aligned_cols=170  Identities=18%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++....           ..+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~   69 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI-----------GIVH   69 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------HHHH
Confidence            469999999999999999999999776665533 3331 12455677777777777766664433           2333


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+...              ..++++|+|.|     +....+.    ..+.. +......||.+|+|++|++++.+|+..
T Consensus        70 ~~l~~~--------------~~~~~~ildg~-----p~~~~~~----~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~  126 (216)
T 3fb4_A           70 ERLSKD--------------DCQKGFLLDGF-----PRTVAQA----DALDSLLTDLGKKLDYVLNIKVEQEELMKRLTG  126 (216)
T ss_dssp             HHHTSG--------------GGTTCEEEESC-----CCSHHHH----HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHS
T ss_pred             HHHhcc--------------cCCCcEEEeCC-----CCCHHHH----HHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHc
Confidence            333221              11334444843     3222110    11211 122334689999999999999999976


Q ss_pred             CC--------------------------CC----c-cc-HHHHHHHHHHHHHHh--------h-CCeEEEcCCCCHHHHH
Q psy16874        166 GD--------------------------ER----Y-EQ-TDFQRKVAENYEKLK--------D-NIWIDIDADKDIDTLG  204 (227)
Q Consensus       166 r~--------------------------~~----~-~~-~~~~~~~~~~~~~~~--------~-~~~~~Id~~~s~~~v~  204 (227)
                      |.                          ..    . .+ ....+++. .|....        . +.+++||+++++++++
T Consensus       127 R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~  205 (216)
T 3fb4_A          127 RWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLD-VNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF  205 (216)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHH-HHHHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred             CCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHH-HHHHhHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence            50                          00    0 11 22223332 222111        1 1589999999999999


Q ss_pred             HHHHHHHHH
Q psy16874        205 LIVKDIVID  213 (227)
Q Consensus       205 ~~I~~~i~~  213 (227)
                      ++|.+.|.+
T Consensus       206 ~~i~~~l~~  214 (216)
T 3fb4_A          206 VDINDLLGG  214 (216)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.76  E-value=9.7e-19  Score=137.91  Aligned_cols=170  Identities=16%  Similarity=0.187  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|+|+|||||||+++.|++.++..+++++. +++. ..+.+.+..+++++..+..+++....           ..+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~   69 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI-----------GIVK   69 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHH-----------HHHH
Confidence            469999999999999999999988776665533 3331 22456677778888777666664433           2333


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+...              ..++++|+|.     +|....+.    ..+.. +......||++|+|++|++++.+|+..
T Consensus        70 ~~l~~~--------------~~~~~~ildg-----~p~~~~~~----~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~  126 (216)
T 3dl0_A           70 ERLGKD--------------DCERGFLLDG-----FPRTVAQA----EALEEILEEMGKPIDYVINIQVDKDVLMERLTG  126 (216)
T ss_dssp             HHHTSG--------------GGTTCEEEES-----CCCSHHHH----HHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHT
T ss_pred             HHHhcc--------------cccCCEEEeC-----CCCCHHHH----HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHC
Confidence            333220              1233444584     33322210    11111 122334689999999999999999976


Q ss_pred             C---------------------------CC----Cccc-HHHHHHHHHHHHHHh-------h--CCeEEEcCCCCHHHHH
Q psy16874        166 G---------------------------DE----RYEQ-TDFQRKVAENYEKLK-------D--NIWIDIDADKDIDTLG  204 (227)
Q Consensus       166 r---------------------------~~----~~~~-~~~~~~~~~~~~~~~-------~--~~~~~Id~~~s~~~v~  204 (227)
                      |                           +.    .-.+ ....+++. .|....       .  +.+++||+++++++++
T Consensus       127 R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~  205 (216)
T 3dl0_A          127 RRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLE-VNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY  205 (216)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHH-HHHHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred             CCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence            5                           00    0011 22222332 222221       1  1589999999999999


Q ss_pred             HHHHHHHHH
Q psy16874        205 LIVKDIVID  213 (227)
Q Consensus       205 ~~I~~~i~~  213 (227)
                      ++|.+.|..
T Consensus       206 ~~i~~~l~~  214 (216)
T 3dl0_A          206 ADLKVLLGG  214 (216)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHh
Confidence            999988863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.74  E-value=2.9e-18  Score=135.17  Aligned_cols=165  Identities=15%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|+|+|||||||+++.|++.++..+++++. +++. ..+++.+..+++++..+..+++....           ..+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~i~   69 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI-----------ALVK   69 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHH-----------HHHH
Confidence            359999999999999999999998654444422 2331 11345566667777666655554433           2333


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      +.+...              ...+++|+|+|     ++...+    ...+   ......||++|+|++|++++.+|+..|
T Consensus        70 ~~l~~~--------------~~~~~~i~dg~-----~~~~~~----~~~l---~~~~~~~d~vi~l~~~~e~~~~R~~~R  123 (214)
T 1e4v_A           70 ERIAQE--------------DCRNGFLLDGF-----PRTIPQ----ADAM---KEAGINVDYVLEFDVPDELIVDRIVGR  123 (214)
T ss_dssp             HHHTSG--------------GGGGCEEEESC-----CCSHHH----HHHH---HHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred             HHHhcc--------------ccCCCEEEeCC-----CCCHHH----HHHH---HhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            333321              01123344843     322111    0112   222347899999999999999998543


Q ss_pred             C------------------------------CCccc--HHHHHHHHHHHHHHh-------h-------CCeEEEcCCCCH
Q psy16874        167 D------------------------------ERYEQ--TDFQRKVAENYEKLK-------D-------NIWIDIDADKDI  200 (227)
Q Consensus       167 ~------------------------------~~~~~--~~~~~~~~~~~~~~~-------~-------~~~~~Id~~~s~  200 (227)
                      .                              .+.++  ..+.+++. .|....       .       ..++.||+++++
T Consensus       124 ~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~-~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~  202 (214)
T 1e4v_A          124 RVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLV-EYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPV  202 (214)
T ss_dssp             EEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHH-HHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCH
T ss_pred             cccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcccccCCeEEEEECCCCH
Confidence            2                              01111  33444553 333321       1       258899999999


Q ss_pred             HHHHHHHHHHH
Q psy16874        201 DTLGLIVKDIV  211 (227)
Q Consensus       201 ~~v~~~I~~~i  211 (227)
                      ++|+++|.+.|
T Consensus       203 ~~v~~~i~~~l  213 (214)
T 1e4v_A          203 AEVRADLEKIL  213 (214)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.74  E-value=2.6e-18  Score=136.60  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=103.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +++++|+|+|+|||||||+++.|++.++..+++++. ++.. ..+.+.|..+++++..+...++.....           
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~-----------   73 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTR-----------   73 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHH-----------
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHH-----------
Confidence            567899999999999999999999988765554422 2221 113455667777777666555543331           


Q ss_pred             HHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         84 TLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        84 ~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                      .+...+.  .+..+|+                 |+|..+  ..+.       ..+..    ...||++|||++|++++.+
T Consensus        74 ~~~~~l~~~~~~~~vi-----------------d~~~~~--~~~~-------~~l~~----~~~~~~vi~L~~~~~~~~~  123 (227)
T 1zd8_A           74 LALHELKNLTQYSWLL-----------------DGFPRT--LPQA-------EALDR----AYQIDTVINLNVPFEVIKQ  123 (227)
T ss_dssp             HHHHHHHTCTTSCEEE-----------------ESCCCS--HHHH-------HHHHT----TSCCCEEEEEECCHHHHHH
T ss_pred             HHHHHHhcccCCCEEE-----------------eCCCCC--HHHH-------HHHHH----hcCCCEEEEEECCHHHHHH
Confidence            1112222  2334455                 865422  1110       11221    1468999999999999999


Q ss_pred             hcCCCC-----C-------------------------Ccc-cHHHHHHHHHHHHHHhh---------CCeEEEcCCCCHH
Q psy16874        162 RKGFGD-----E-------------------------RYE-QTDFQRKVAENYEKLKD---------NIWIDIDADKDID  201 (227)
Q Consensus       162 R~~~r~-----~-------------------------~~~-~~~~~~~~~~~~~~~~~---------~~~~~Id~~~s~~  201 (227)
                      |+..|.     +                         +.+ ..+.+......|.....         ..+++||++ +++
T Consensus       124 R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~  202 (227)
T 1zd8_A          124 RLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETN  202 (227)
T ss_dssp             HHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHH
T ss_pred             HHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHH
Confidence            986541     1                         111 12333222234443321         258999999 999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy16874        202 TLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       202 ~v~~~I~~~i~~~l~~~  218 (227)
                      +++++|.+.|...+...
T Consensus       203 ~v~~~i~~~l~~~~~~~  219 (227)
T 1zd8_A          203 KIWPYVYAFLQTKVPQR  219 (227)
T ss_dssp             HHHHHHHHHHTTTSCC-
T ss_pred             HHHHHHHHHHHhhcCCC
Confidence            99999999998766543

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=99.71  E-value=2.6e-18  Score=140.68  Aligned_cols=162  Identities=10%  Similarity=0.015  Sum_probs=111.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+++|+|+|.+||||||+++.|.+.|+.+|+.|..+++|+     ++.+..      .                .+..+
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt-----~eE~~~------~----------------yl~R~  136 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT-----ETERGQ------W----------------YFQRY  136 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC-----HHHHTS------C----------------TTHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC-----hHHHhc------h----------------HHHHH
Confidence            35889999999999999999999999999999999999885     322211      0                11334


Q ss_pred             HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh----hhhh---cc---cCCCCCCCEEEEeec
Q psy16874         86 TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI----SWCF---QP---EKGLPKPDAVLLFKL  154 (227)
Q Consensus        86 ~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~----~~~~---~~---~~~~~~pd~vi~L~~  154 (227)
                      .+.+ ..|.+||+                 ||||++.+++......++.    ..+.   .+   ....+.|+++|||++
T Consensus       137 ~~~LP~~G~IvIf-----------------DRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~I  199 (304)
T 3czq_A          137 VATFPTAGEFVLF-----------------DRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINI  199 (304)
T ss_dssp             HTTCCCTTCEEEE-----------------EECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             HHhcccCCeEEEE-----------------ECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEC
Confidence            4445 58999999                 9999999988876544443    1222   22   112347999999999


Q ss_pred             CHHHHHHhcCCCCC---C---c-----ccHHHHHHHHHHHHHHhhC------CeEEEcCCCCH---HHHHHHHHHHH
Q psy16874        155 NEEALQRRKGFGDE---R---Y-----EQTDFQRKVAENYEKLKDN------IWIDIDADKDI---DTLGLIVKDIV  211 (227)
Q Consensus       155 ~~e~~~~R~~~r~~---~---~-----~~~~~~~~~~~~~~~~~~~------~~~~Id~~~s~---~~v~~~I~~~i  211 (227)
                      |+++..+|+..|.+   .   +     +..+++..+.++|+.....      +|++||++...   ..+...|.+.|
T Consensus       200 s~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l  276 (304)
T 3czq_A          200 GREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKL  276 (304)
T ss_dssp             CHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHH
Confidence            99999999864321   1   1     1234555666666665432      89999999654   33444444443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.69  E-value=7.5e-17  Score=125.79  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=95.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      +++|+|+|++||||||+++.|++.++...++.+.+.        ..........+..+.......        .+..+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~--------~~~~~~~~~~g~~~~~~~~~~--------~~~~l~~   81 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALH--------PPENIRKMSEGIPLTDDDRWP--------WLAAIGE   81 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGC--------CHHHHHHHHHTCCCCHHHHHH--------HHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCc--------chhhHHHHhcCCCCCchhhHH--------HHHHHHH
Confidence            668999999999999999999999865333322111        111111222233333321111        1123333


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .+..+..+|+                 |......            .+...+....+.|+.+|||++|++++.+|+..|.
T Consensus        82 ~~~~~~~viv-----------------d~~~~~~------------~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  132 (202)
T 3t61_A           82 RLASREPVVV-----------------SCSALKR------------SYRDKLRESAPGGLAFVFLHGSESVLAERMHHRT  132 (202)
T ss_dssp             HHTSSSCCEE-----------------ECCCCSH------------HHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH
T ss_pred             HHhcCCCEEE-----------------ECCCCCH------------HHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh
Confidence            4445555555                 6322110            1111122222467899999999999999997654


Q ss_pred             CCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        168 ERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ......+.++.+.+.++..... ..++||++++++++.++|.+.|..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          133 GHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAGLAR  179 (202)
T ss_dssp             SSCCCHHHHHHHHHHCCCCTTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHhcCCCCCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            4333344555555444433322 688999999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.68  E-value=7e-17  Score=124.39  Aligned_cols=171  Identities=18%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +++++|+|+|++||||||+++.|++.++..+.++..+.        ++.++..+.....+........+.    ......
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~--------~d~~~~~~~~~~~~~~~~r~~~~~----~~~~~~   78 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD--------GDWARTTVSEGAGFTREERLRHLK----RIAWIA   78 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHHTTTTTTCCCCHHHHHHHHH----HHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee--------HHHHHHHHhhccCCChhhHHHHHH----HHHHHH
Confidence            46789999999999999999999999998888876554        222222111111122211110000    000111


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......|.+|++                 |++..    +....     .++..+....+.|+++|||++|++++.+|+..
T Consensus        79 ~~~~~~g~~vi~-----------------d~~~~----~~~~r-----~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           79 RLLARNGVIVIC-----------------SFVSP----YKQAR-----NMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             HHHHTTTCEEEE-----------------ECCCC----CHHHH-----HHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             HHHHhCCCEEEE-----------------eCccc----cHHHH-----HHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            222356778888                 75431    11111     22222222233689999999999999999742


Q ss_pred             C---CCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874        166 G---DERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       166 r---~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l  215 (227)
                      +   +...+....+..+...|+.. ....++||++ .+++++.++|.+.|...+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          133 GLYKKALKGELENFTGITDPYEPP-ENPQLVLDTESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             HHHHHHHTTCCSSCHHHHSCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHhhcchhhhhhhhhcccCC-CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            1   00000001112222233321 1256899998 899999999999887654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.68  E-value=1.3e-15  Score=117.14  Aligned_cols=174  Identities=11%  Similarity=0.133  Sum_probs=89.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh----
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE----   82 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   82 (227)
                      ++++|+|+|+|||||||+++.|++.++..|++...+.       .++.+++................+.......+    
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS-------FGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMA   74 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE-------HHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe-------hHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHH
Confidence            3679999999999999999999999997665443332       13444444322111000000000000000000    


Q ss_pred             -hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         83 -PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        83 -~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                       ..+.+.. .+..+|+                 |++.....+.... .+++..++..+     .||++|||++|++++.+
T Consensus        75 ~~~i~~~~-~~~~vii-----------------d~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~  130 (192)
T 1kht_A           75 GRKIAEMA-KESPVAV-----------------DTHSTVSTPKGYL-PGLPSWVLNEL-----NPDLIIVVETTGDEILM  130 (192)
T ss_dssp             HHHHHHHH-TTSCEEE-----------------ECCSEEEETTEEE-ESSCHHHHHHH-----CCSEEEEEECCHHHHHH
T ss_pred             HHHHHhhc-cCCeEEE-----------------ccceecccccccc-ccCcHHHHhcc-----CCCEEEEEeCCHHHHHH
Confidence             1233322 3344555                 5432211111101 12222223211     47899999999999996


Q ss_pred             -hcCC--CCCCccc---HHHHHHHHHHHHHHh----hCCeEEE-cCCCCHHHHHHHHHHHH
Q psy16874        162 -RKGF--GDERYEQ---TDFQRKVAENYEKLK----DNIWIDI-DADKDIDTLGLIVKDIV  211 (227)
Q Consensus       162 -R~~~--r~~~~~~---~~~~~~~~~~~~~~~----~~~~~~I-d~~~s~~~v~~~I~~~i  211 (227)
                       |+..  |+.....   ......+...|....    ...+++| |.+++++++++.|.+.|
T Consensus       131 rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          131 RRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHhhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence             8865  4332222   223334444443322    2245565 45567999999988765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.68  E-value=5.2e-16  Score=125.89  Aligned_cols=164  Identities=18%  Similarity=0.230  Sum_probs=99.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +++++|+|+|+|||||||+++.|++.+...|+.+.++..        +.++..+. +  +.......+...    ....+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~--------D~~~~~l~-~--~~~~~e~~~~~~----~~~~i   66 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS--------DLIRESFP-V--WKEKYEEFIKKS----TYRLI   66 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT--------HHHHTTSS-S--CCGGGHHHHHHH----HHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc--------hHHHHHHh-h--hhHHHHHHHHHH----HHHHH
Confidence            458899999999999999999999998877777664321        11111110 0  111111111111    11234


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .+.+.. ..||+                 |+..+..    ...     ..+..+......|+++|||++|++++.+|+..
T Consensus        67 ~~~l~~-~~vIi-----------------D~~~~~~----~~~-----~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~  119 (260)
T 3a4m_A           67 DSALKN-YWVIV-----------------DDTNYYN----SMR-----RDLINIAKKYNKNYAIIYLKASLDVLIRRNIE  119 (260)
T ss_dssp             HHHHTT-SEEEE-----------------CSCCCSH----HHH-----HHHHHHHHHTTCEEEEEEEECCHHHHHHHHHH
T ss_pred             HHHhhC-CEEEE-----------------eCCcccH----HHH-----HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHh
Confidence            455555 77777                 7533221    110     22222223345688999999999999999976


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhh-----CCeEEEcCCC--CHHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKD-----NIWIDIDADK--DIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Id~~~--s~~~v~~~I~~~i~  212 (227)
                      |+... +.+.++.+...|+....     .+.++||++.  +++++++.|.+.+.
T Consensus       120 R~~~~-~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~  172 (260)
T 3a4m_A          120 RGEKI-PNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK  172 (260)
T ss_dssp             TTCSS-CHHHHHHHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred             CCCCC-CHHHHHHHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence            65322 35666666666654331     2678999987  78888887777664

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.67  E-value=5.4e-17  Score=125.31  Aligned_cols=173  Identities=12%  Similarity=0.020  Sum_probs=94.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh-hH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE-PT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   84 (227)
                      ++|++|+|+|+|||||||+++.|++.++...++.+            .....+..... ..............+..+ ..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   69 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD------------AFKEVMFDGLG-WSDREWSRRVGATAIMMLYHT   69 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH------------HHHHHHHHHHC-CCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH------------HHHHHHHHhcC-ccchHHHHHhhHHHHHHHHHH
Confidence            56899999999999999999999999865332211            11111111111 111111111111112222 34


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.+.+..|..||+                 |++. +..  ....     .+ ..+......|+++|||++|++++.+|+.
T Consensus        70 ~~~~l~~g~~vi~-----------------d~~~-~~~--~~~~-----~~-~~l~~~~~~~~~~v~l~~~~e~~~~R~~  123 (193)
T 2rhm_A           70 AATILQSGQSLIM-----------------ESNF-RVD--LDTE-----RM-QNLHTIAPFTPIQIRCVASGDVLVERIL  123 (193)
T ss_dssp             HHHHHHTTCCEEE-----------------EECC-CHH--HHHH-----HH-HHHHHHSCCEEEEEEEECCHHHHHHHHH
T ss_pred             HHHHHhCCCeEEE-----------------ecCC-CCH--HHHH-----HH-HHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence            5556677777887                 8665 110  0000     11 1122233468899999999999999986


Q ss_pred             CCC---CCc-c--cHHHHH--HHHHHHHH---Hhh-CCeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        165 FGD---ERY-E--QTDFQR--KVAENYEK---LKD-NIWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       165 ~r~---~~~-~--~~~~~~--~~~~~~~~---~~~-~~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      .|+   ++. .  ..+++.  .+...|+.   +.. ...++||++++.+++.++|.+.|...+..
T Consensus       124 ~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~  188 (193)
T 2rhm_A          124 SRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS  188 (193)
T ss_dssp             HHHHTTCC--------CHHHHHHHHHSCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred             HhcCccccCcccccCccCcchhhHHHHhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence            542   121 1  122332  23333332   222 26899999987666677777777666654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.65  E-value=1.6e-15  Score=119.16  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=95.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++|++|+|+|++||||||+++.|++.++ ..|+++..+.        ++.++..+.....+........+.    .....
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~--------~d~~r~~l~~~~~~~~~~r~~~~~----~~~~~   90 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFSEADRNENIR----RIAEV   90 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC--------ChHHhhhhccccCCCHHHHHHHHH----HHHHH
Confidence            4688999999999999999999999998 6677666554        222221111111111111000000    01123


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccC------CCCCCCEEEEeecCHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEK------GLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~pd~vi~L~~~~e~  158 (227)
                      +.+.+..|..||+                 | |. +  ++....     .++..+..      ..+.|+++|||++|+++
T Consensus        91 ~~~~l~~g~~VI~-----------------d-~~-~--~~~~~~-----~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~  144 (211)
T 1m7g_A           91 AKLFADSNSIAIT-----------------S-FI-S--PYRKDR-----DTARQLHEVATPGEETGLPFVEVYVDVPVEV  144 (211)
T ss_dssp             HHHHHHTTCEEEE-----------------E-CC-C--CCHHHH-----HHHHHHHHCCCTTCSCCCCEEEEEEECCHHH
T ss_pred             HHHHHHCCCEEEE-----------------e-cC-C--ccHHHH-----HHHHHHhhhcccccccCCCeEEEEEeCCHHH
Confidence            4456678888888                 7 33 2  222111     34433322      34578999999999999


Q ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHHHh----------hCCeEEEcCCC-CHHHHHHHHHHHHHH
Q psy16874        159 LQRRKGFGDERYEQTDFQRKVAENYEKLK----------DNIWIDIDADK-DIDTLGLIVKDIVID  213 (227)
Q Consensus       159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Id~~~-s~~~v~~~I~~~i~~  213 (227)
                      +.+|+.+  +      ++.+..+.|....          ....++||+++ +++++.++|.+.+..
T Consensus       145 ~~~R~~r--~------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          145 AEQRDPK--G------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             HHTSCTT--C------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhH--H------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            9999731  1      1112222111100          11468999998 999999999988864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=3.2e-16  Score=122.04  Aligned_cols=167  Identities=14%  Similarity=0.059  Sum_probs=90.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++++.+|+|+|++||||||+++.|++.++...++.+.+.....+...    .+++....      .. .|   +......
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i----~~~~~~~~------~~-~~---~~~e~~~   87 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTV----GELFTERG------EA-GF---RELERNM   87 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCH----HHHHHHHH------HH-HH---HHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcH----HHHHHhcC------hH-HH---HHHHHHH
Confidence            35677999999999999999999999996543332211100000011    11111000      00 00   0000123


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.........|+.          +++|.+.++              .....+.       .++.+|||++|++++.+|+.
T Consensus        88 l~~l~~~~~~vi~----------~ggg~~~~~--------------~~~~~l~-------~~~~vi~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A           88 LHEVAEFENVVIS----------TGGGAPCFY--------------DNMEFMN-------RTGKTVFLNVHPDVLFRRLR  136 (199)
T ss_dssp             HHHHTTCSSEEEE----------CCTTGGGST--------------THHHHHH-------HHSEEEEEECCHHHHHHHHH
T ss_pred             HHHHhhcCCcEEE----------CCCcEEccH--------------HHHHHHH-------cCCEEEEEECCHHHHHHHHh
Confidence            3333334455554          333333331              0012221       26789999999999999997


Q ss_pred             -CCC--CCcc---cHHHHHHHHHHHHHH---hhCCeEEEcCCC-CHHHHHHHHHHHHHHHhh
Q psy16874        165 -FGD--ERYE---QTDFQRKVAENYEKL---KDNIWIDIDADK-DIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       165 -~r~--~~~~---~~~~~~~~~~~~~~~---~~~~~~~Id~~~-s~~~v~~~I~~~i~~~l~  216 (227)
                       .+.  +...   ..+..+.+...|...   .....++||+++ ++++++++|.+.+..+++
T Consensus       137 ~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l~  198 (199)
T 3vaa_A          137 IAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELLE  198 (199)
T ss_dssp             HTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence             432  1111   123344444444322   222457889886 999999999999988763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.65  E-value=1.2e-15  Score=115.49  Aligned_cols=71  Identities=8%  Similarity=-0.025  Sum_probs=48.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCC---cccHHHHHHHHH-HH---HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDER---YEQTDFQRKVAE-NY---EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~-~~---~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      .|+++|||++|++++.+|+..|+..   ....+..+++.. ..   ........++||++++++++.++|.+.+..++
T Consensus       101 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          101 DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            6789999999999999999766432   122344444322 11   01111245788999999999999999998765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.64  E-value=1.7e-15  Score=117.99  Aligned_cols=165  Identities=15%  Similarity=0.098  Sum_probs=90.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+|+|++||||||+++.|+..++...   .......   . ...... ...+..+........+..    ....+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~---i~~d~~~---~-~~~~~~-~~~g~~~~~~~~~~~~~~----~~~~~   94 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF---AEADAFH---S-PENIAT-MQRGIPLTDEDRWPWLRS----LAEWM   94 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE---EEGGGGS---C-HHHHHH-HHTTCCCCHHHHHHHHHH----HHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE---Ecccccc---c-HHHHHH-HhcCCCCCCcccccHHHH----HHHHH
Confidence            4578999999999999999999999884321   1111000   0 111111 112222222211111110    01233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+..+..+++                 |..+..    ....     ..+.    ....+..+|||++|++++.+|+..
T Consensus        95 ~~~~~~g~~vii-----------------d~~~~~----~~~~-----~~l~----~~~~~~~vv~l~~~~e~l~~Rl~~  144 (200)
T 4eun_A           95 DARADAGVSTII-----------------TCSALK----RTYR-----DVLR----EGPPSVDFLHLDGPAEVIKGRMSK  144 (200)
T ss_dssp             HHHHHTTCCEEE-----------------EECCCC----HHHH-----HHHT----TSSSCCEEEEEECCHHHHHHHHTT
T ss_pred             HHHHhcCCCEEE-----------------Echhhh----HHHH-----HHHH----HhCCceEEEEEeCCHHHHHHHHHh
Confidence            334455555555                 521111    0000     1221    112356899999999999999987


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      |+......+.+..+.+.++.+... ..++||++++++++.++|.+.+.
T Consensus       145 R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~  192 (200)
T 4eun_A          145 REGHFMPASLLQSQLATLEALEPDESGIVLDLRQPPEQLIERALTWLD  192 (200)
T ss_dssp             CSCCSSCGGGHHHHHHHCCCCCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             cccCCCCHHHHHHHHHHhCCCCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence            755444333444443333333222 67899999999999999988875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.63  E-value=5.2e-15  Score=112.61  Aligned_cols=169  Identities=13%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE   80 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (227)
                      |+.+..++.+|+|+|++||||||+++.|+..++...   ....... .   ...+... ..+..+........+.  .  
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~---i~~d~~~-~---~~~~~~~-~~g~~~~~~~~~~~~~--~--   68 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAF---LDGDFLH-P---RRNIEKM-ASGEPLNDDDRKPWLQ--A--   68 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEE---EEGGGGC-C---HHHHHHH-HTTCCCCHHHHHHHHH--H--
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEE---EeCcccc-c---hHHHHHh-hcCcCCCccccccHHH--H--
Confidence            666556688999999999999999999999875322   2211110 0   1111111 1122223211111110  0  


Q ss_pred             hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHH
Q psy16874         81 REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEAL  159 (227)
Q Consensus        81 ~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~  159 (227)
                      ....+...+..+..+|+                 |....    +.        .+...+...  .++ .+|||++|++++
T Consensus        69 ~~~~~~~~~~~~~~~vi-----------------~~~~~----~~--------~~~~~l~~~--~~~~~vv~l~~~~e~~  117 (175)
T 1knq_A           69 LNDAAFAMQRTNKVSLI-----------------VCSAL----KK--------HYRDLLREG--NPNLSFIYLKGDFDVI  117 (175)
T ss_dssp             HHHHHHHHHHHCSEEEE-----------------ECCCC----SH--------HHHHHHHTT--CTTEEEEEEECCHHHH
T ss_pred             HHHHHHHHHhcCCcEEE-----------------EeCch----HH--------HHHHHHHhc--CCCEEEEEEECCHHHH
Confidence            01233344445666666                 42111    00        111111111  245 799999999999


Q ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHHH-hhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        160 QRRKGFGDERYEQTDFQRKVAENYEKL-KDN-IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       160 ~~R~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .+|+..|+....+.+.+......++.. ... ..++||++++++++.++|.+.+.
T Consensus       118 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          118 ESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             HHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence            999987654433333333333322222 112 57899999999999999988764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.63  E-value=6.8e-16  Score=118.17  Aligned_cols=168  Identities=11%  Similarity=-0.030  Sum_probs=88.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhh-hhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWE-REPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   84 (227)
                      ++|++|+|+|+|||||||+++.|++.++...+    .. +   ...+..+++++..+.......      ..+.. ..+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d-~---~~~g~~i~~~~~~g~~~~~~~------~~~~~~~~~~   68 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FE-P---EEMGQALRKLTPGFSGDPQEH------PMWIPLMLDA   68 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEE----CC-T---HHHHHHHHHTSTTCCSCGGGS------TTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----Ec-h---hhhHHHHHHhCccccchhhhh------HHHHHHHHHH
Confidence            46889999999999999999999998876332    11 1   223455555544221110000      00000 1133


Q ss_pred             HHHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         85 LTKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        85 i~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      +.+.+.. |..|++                 |..+.....+.        .+...+.... .+-..|||++|++++.+|+
T Consensus        69 i~~~l~~~g~~vi~-----------------d~~~~~~~~~~--------~~~~~l~~~~-~~~~~i~l~~~~e~~~~R~  122 (183)
T 2vli_A           69 LQYASREAAGPLIV-----------------PVSISDTARHR--------RLMSGLKDRG-LSVHHFTLIAPLNVVLERL  122 (183)
T ss_dssp             HHHHHHHCSSCEEE-----------------EECCCCHHHHH--------HHHHHHHHTT-CCCEEEEEECCHHHHHHHH
T ss_pred             HHHHHHhCCCcEEE-----------------eeeccCHHHHH--------HHHHHHHhcC-CceEEEEEeCCHHHHHHHH
Confidence            4444554 677777                 63322110110        1111111111 2235699999999999999


Q ss_pred             CCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHh
Q psy16874        164 GFGDERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       164 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l  215 (227)
                      ..|..+....+.+..+.+.++.. .... +||++ .++++++++|.+.+...+
T Consensus       123 ~~R~~r~~~~~~~~~~~~~~~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          123 RRDGQPQVNVGTVEDRLNELRGE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             HTC----CCHHHHHHHHHHHTSG-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             HhccccchhHHHHHHHHHhhccc-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence            76643222234445555544433 2234 99998 899999999998886544

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.62  E-value=1.1e-15  Score=133.76  Aligned_cols=170  Identities=14%  Similarity=0.137  Sum_probs=114.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+++|+|+|.+||||+|+++.|.+.++.+|+.|..+.+|+.     +...    . ..                ..+..
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~-----~E~~----~-~y----------------l~R~~   94 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD-----EELE----R-PP----------------QWRFW   94 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCH-----HHHT----S-CT----------------THHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhcc----C-Ch----------------hhhHH
Confidence            568999999999999999999999999999999988888852     1111    0 00                00112


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcc---cCCCCCCCEEEEeecC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQP---EKGLPKPDAVLLFKLN  155 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~pd~vi~L~~~  155 (227)
                      ...-..|.++|+                 ||||++...+.......+.       .++..+   ....+.|+++|||++|
T Consensus        95 ~~lP~~G~IvIf-----------------dRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is  157 (500)
T 3czp_A           95 RRLPPKGRTGIF-----------------FGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLS  157 (500)
T ss_dssp             HHCCCTTCEEEE-----------------ESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             HhCCCCCeEEEE-----------------eCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence            222247899999                 9999999877655433332       222222   2345578999999999


Q ss_pred             HHHHHHhcCCCCC-----------CcccHHHHHHHHHHHHHHhh----C--CeEEEcCCC---CHHHHHHHHHHHHHHHh
Q psy16874        156 EEALQRRKGFGDE-----------RYEQTDFQRKVAENYEKLKD----N--IWIDIDADK---DIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       156 ~e~~~~R~~~r~~-----------~~~~~~~~~~~~~~~~~~~~----~--~~~~Id~~~---s~~~v~~~I~~~i~~~l  215 (227)
                      +++..+|+..|.+           +++..++.....++|+....    .  +|++|+++.   ....+...|.+.|...+
T Consensus       158 ~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l  237 (500)
T 3czp_A          158 KKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAAL  237 (500)
T ss_dssp             HHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHH
Confidence            9999999987632           22234445544455555442    1  899999995   35678888888888887


Q ss_pred             hhc
Q psy16874        216 KKS  218 (227)
Q Consensus       216 ~~~  218 (227)
                      .+.
T Consensus       238 ~~~  240 (500)
T 3czp_A          238 ATK  240 (500)
T ss_dssp             HC-
T ss_pred             Hhc
Confidence            643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.60  E-value=7.4e-16  Score=118.31  Aligned_cols=162  Identities=12%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhh--hhhhhhHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSAN--RWEREPTL   85 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i   85 (227)
                      +++|+|+|++||||||+++.|++.++...++.+.+            +....  +..+......  +...  +......+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~------------~~~~~--g~~~~~~~~~--~g~~~~~~~~~~~~   68 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE------------IEKRT--GADIAWIFEM--EGEAGFRRREREMI   68 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH------------HHHHH--TSCHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH------------HHHHc--CCChhhHHHH--hCHHHHHHHHHHHH
Confidence            56899999999999999999999997644432221            11111  1111100000  0000  00011233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc--
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK--  163 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~--  163 (227)
                      .........|+.          +++|++++.     ...         .++.       ...++|||++|++++.+|+  
T Consensus        69 ~~~~~~~~~vi~----------~gg~~~~~~-----~~~---------~~l~-------~~~~vi~L~~~~e~l~~Rl~~  117 (185)
T 3trf_A           69 EALCKLDNIILA----------TGGGVVLDE-----KNR---------QQIS-------ETGVVIYLTASIDTQLKRIGQ  117 (185)
T ss_dssp             HHHHHSSSCEEE----------CCTTGGGSH-----HHH---------HHHH-------HHEEEEEEECCHHHHHHHHHC
T ss_pred             HHHHhcCCcEEe----------cCCceecCH-----HHH---------HHHH-------hCCcEEEEECCHHHHHHHHhh
Confidence            333344444554          455666661     110         2221       1137999999999999999  


Q ss_pred             CCCC--CCcccH---HHHHHHHHHHHHHhhC-CeEEEcCCC-CHHHHHHHHHHHHHHHhh
Q psy16874        164 GFGD--ERYEQT---DFQRKVAENYEKLKDN-IWIDIDADK-DIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       164 ~~r~--~~~~~~---~~~~~~~~~~~~~~~~-~~~~Id~~~-s~~~v~~~I~~~i~~~l~  216 (227)
                      ..+.  +.....   +.++.+......+... ..++||++. +++++.+.|.+.+...+.
T Consensus       118 ~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          118 KGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             CTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence            5432  222222   2333333322222221 348899886 899999999988866554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.60  E-value=6e-15  Score=112.41  Aligned_cols=161  Identities=12%  Similarity=0.043  Sum_probs=81.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH-HHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc-----CCCCHHHHHHHHHhhhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD-YLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK-----IELPDQAAHLLFSANRWER   81 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   81 (227)
                      |++|+|+|+|||||||+++.|++ .++..+++.             ..++..+...     ..+.........    ...
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-------------d~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~   64 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-------------DDYRQSIMAHEERDEYKYTKKKEGIVT----GMQ   64 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-------------HHHHHHHTTSCCGGGCCCCHHHHHHHH----HHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-------------HHHHHHhhCCCccchhhhchhhhhHHH----HHH
Confidence            57899999999999999999998 343323222             1222222111     112222211110    011


Q ss_pred             hhHHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874         82 EPTLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        82 ~~~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                      ...+.+.+   ..|..+|+                 |.+..+...+         ..+..+......+..+|||++|+++
T Consensus        65 ~~~~~~~l~~~~~g~~vi~-----------------d~~~~~~~~~---------~~l~~~~~~~~~~~~~i~l~~~~~~  118 (181)
T 1ly1_A           65 FDTAKSILYGGDSVKGVII-----------------SDTNLNPERR---------LAWETFAKEYGWKVEHKVFDVPWTE  118 (181)
T ss_dssp             HHHHHHHHTSCSSCCEEEE-----------------CSCCCSHHHH---------HHHHHHHHHHTCEEEEEECCCCHHH
T ss_pred             HHHHHHHHhhccCCCeEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCCEEEEEEeCCHHH
Confidence            13455566   66777777                 8665432111         1121121112235579999999999


Q ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        159 LQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +.+|+..|.....+.+.+.++.+.|+.....+.++||++.+ +++...|...+.
T Consensus       119 ~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~  171 (181)
T 1ly1_A          119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKP-KAVIFDVDGTLA  171 (181)
T ss_dssp             HHHHHTTCGGGCCCHHHHHHHHHHHHHHHTCCCC--------------------
T ss_pred             HHHHHhccccCCCCHHHHHHHHHHhhccCCCCccccCCCCC-ceeeehhhhhhh
Confidence            99999876533334677778888888776544455888764 666666655544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.59  E-value=1.2e-15  Score=115.56  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCC--C--CCcccHHHHHHH----HHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFG--D--ERYEQTDFQRKV----AENYEKLKDNIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r--~--~~~~~~~~~~~~----~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .++.+|||++|++++.+|+..|  .  +...+.+.....    ...|...   ..++||++++++++.++|.+.|
T Consensus        96 ~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~---a~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A           96 GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKN---ASFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             TSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHT---CSEEEEGGGCHHHHHHHHHHC-
T ss_pred             cCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHH---CCEEEECCCCHHHHHHHHHHHh
Confidence            4689999999999999999765  1  122211111111    1122222   4588999889999998887654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.59  E-value=4.8e-16  Score=119.33  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCC--CcccHHHHHHHHHHHH---HHhh-CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDE--RYEQTDFQRKVAENYE---KLKD-NIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~--~~~~~~~~~~~~~~~~---~~~~-~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      .+.+|||++|++++.+|+..|..  .+...+....+...|.   .... ...++||++ .+++++.+.|.+.+
T Consensus        94 ~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l  166 (184)
T 2iyv_A           94 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL  166 (184)
T ss_dssp             TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTS
T ss_pred             CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHH
Confidence            45799999999999999976642  2222112222332222   1111 146899998 89999888887665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.58  E-value=2e-15  Score=114.05  Aligned_cols=66  Identities=9%  Similarity=-0.018  Sum_probs=40.9

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH---Hhh-CCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK---LKD-NIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ++++|||++|++++.+|+..|.++....++...+.+.|..   ... ..+++ +++.+++++.++|.+.+.
T Consensus        93 ~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~i~~~l~  162 (168)
T 2pt5_A           93 RGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-KGEKPPEEVVKEILLSLE  162 (168)
T ss_dssp             TSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-CCCCCHHHHHHHHHHHHH
Confidence            6899999999999999997653221100111112222211   111 24555 777999999999888774

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=99.53  E-value=2.9e-15  Score=131.01  Aligned_cols=169  Identities=13%  Similarity=0.104  Sum_probs=112.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ..+++|+|+|.+||||+|+++.|.+.|+.+|+.|..+.+|+.     +..    . ...+          .      +..
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~-----~E~----~-~~yl----------~------R~~  351 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTE-----EER----A-QPYL----------W------RFW  351 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCH-----HHH----T-SCTT----------H------HHH
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh-----hhh----c-chHH----------H------HHH
Confidence            458899999999999999999999999999999998988852     111    0 0000          0      111


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcc---cCCCCCCCEEEEeecC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQP---EKGLPKPDAVLLFKLN  155 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~pd~vi~L~~~  155 (227)
                      ...=..|.++|+                 ||||++...+.......+.       .++..+   ....+.|+++|||++|
T Consensus       352 ~~lP~~G~i~If-----------------DRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is  414 (500)
T 3czp_A          352 RHIPARRQFTIF-----------------DRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAID  414 (500)
T ss_dssp             TTCCCTTCEEEE-----------------ESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HhCCCCCeEEEE-----------------eCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECC
Confidence            111237889999                 9999998876654422221       222223   1234578899999999


Q ss_pred             HHHHHHhcCCCC-----------CCcccH----HHHHHHHHHHHHHhhC--CeEEEcCCC---CHHHHHHHHHHHHHHHh
Q psy16874        156 EEALQRRKGFGD-----------ERYEQT----DFQRKVAENYEKLKDN--IWIDIDADK---DIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       156 ~e~~~~R~~~r~-----------~~~~~~----~~~~~~~~~~~~~~~~--~~~~Id~~~---s~~~v~~~I~~~i~~~l  215 (227)
                      +++..+|+..|.           .+....    +|.....+.+..-...  +|++|+++.   ....+.+.|.+.|...|
T Consensus       415 ~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l  494 (500)
T 3czp_A          415 KQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY  494 (500)
T ss_dssp             HHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence            999999986431           122222    3333333333333222  899999995   35678888888888777


Q ss_pred             hh
Q psy16874        216 KK  217 (227)
Q Consensus       216 ~~  217 (227)
                      .+
T Consensus       495 ~~  496 (500)
T 3czp_A          495 KK  496 (500)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.52  E-value=3.9e-14  Score=107.30  Aligned_cols=67  Identities=6%  Similarity=-0.002  Sum_probs=45.4

Q ss_pred             CCEEEEeecCHHHHHHhcC--CC-C--CCcccHHHHHHHHHHHHHHhh---CCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKG--FG-D--ERYEQTDFQRKVAENYEKLKD---NIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~--~r-~--~~~~~~~~~~~~~~~~~~~~~---~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      ++++|||++|++++.+|+.  .| .  +.....+...++...|.....   ...++||++ .+++++.+.|.+.+.
T Consensus        94 ~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~  169 (173)
T 1e6c_A           94 HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR  169 (173)
T ss_dssp             HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence            5799999999999999987  55 2  223323444445544433221   135789988 899999888887663

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.52  E-value=1.5e-14  Score=110.08  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             CCEEEEeecCHHHHHHhcCCC--CCC--cccHHHHHHHHHHHHH---HhhC-CeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFG--DER--YEQTDFQRKVAENYEK---LKDN-IWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r--~~~--~~~~~~~~~~~~~~~~---~~~~-~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      .+++|||++|++++.+|+..+  .++  ...   ...+.+.|..   +... ..++||++ .+++++.+.|.+.+.
T Consensus        93 ~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~  165 (175)
T 1via_A           93 AGFCIYLKADFEYLKKRLDKDEISKRPLFYD---EIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKKVIK  165 (175)
T ss_dssp             GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHhcccCCCCCCccc---HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence            358999999999999999654  122  221   2223222222   1111 46899999 799999999988774

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.52  E-value=2.7e-13  Score=105.81  Aligned_cols=173  Identities=12%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeE-EeeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQ-FVNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFS   75 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~   75 (227)
                      .++++|+|+|++||||||+++.|++.++. .++++. .+++|..+...|        +.+......+..+....    +.
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~   85 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDK----YA   85 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEE----ET
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHH----hC
Confidence            46889999999999999999999998853 233333 355553222111        12222222221100000    00


Q ss_pred             hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCC-CCEEEEee
Q psy16874         76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPK-PDAVLLFK  153 (227)
Q Consensus        76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pd~vi~L~  153 (227)
                      ...+.. ...+.+.+..|..||+                 |..+..      .      ..+   ....+. ..++|||+
T Consensus        86 ~~~~~~~~~~i~~~l~~g~~vi~-----------------d~~~~~------~------~~l---~~~~~~~~~~~i~l~  133 (204)
T 2qor_A           86 NNFYGTLKSEYDLAVGEGKICLF-----------------EMNING------V------KQL---KESKHIQDGIYIFVK  133 (204)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEE-----------------ECCHHH------H------HHH---HHCSSCSCCEEEEEE
T ss_pred             CCeecCCHHHHHHHHHcCCeEEE-----------------EECHHH------H------HHH---HHhcCCCCeEEEEEc
Confidence            000000 1245666778888887                 622111      0      111   111111 13799998


Q ss_pred             -cCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH----hhC-CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        154 -LNEEALQRRKGFGDERYEQTDFQRKVAENYEKL----KDN-IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       154 -~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~----~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                       +|++++.+|+..|+... .....+++......+    ... ..+ |+++ ++++++++|.+.|...+.+
T Consensus       134 ~~s~e~l~~Rl~~R~~~~-~~~i~~rl~~~~~~~~~~~~~~~d~v-i~n~-~~e~~~~~i~~~i~~~~~~  200 (204)
T 2qor_A          134 PPSIDILLGRLKNRNTEK-PEEINKRMQELTREMDEADKVGFNYF-IVND-DLARTYAELREYLLGSYPQ  200 (204)
T ss_dssp             CSCHHHHHHHHHTCTTSC-HHHHHHHHHHHHHHHHHHHHHTCSEE-EECS-SHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhccCcEE-EECc-CHHHHHHHHHHHHHHHhhc
Confidence             99999999998765321 123333343332222    122 444 5555 8999999999999876643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.49  E-value=9.7e-13  Score=103.54  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=47.6

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      .||.+|||++|++++.+|+..|. .....+...++..   .+..... ..++||++++++++.++|.+.+..++.
T Consensus       125 ~~d~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~~~~~-ad~vId~~~~~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          125 KANRVLVVDVSPETQLKRTMQRD-DVTREHVEQILAAQATREARLAV-ADDVIDNNGAPDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHH-TCCHHHHHHHHHHSCCHHHHHHH-CSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHhcCChHHHHHh-CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999997542 2222233333332   2221111 237899999999999999998877654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.48  E-value=1.5e-13  Score=105.01  Aligned_cols=38  Identities=32%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|++|+|+|++||||||+++.|++.+...|+++..+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            45889999999999999999999999977777776554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.47  E-value=2.5e-13  Score=109.05  Aligned_cols=171  Identities=15%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe-eC--CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV-NF--PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      +|.+|+|+|++||||||+++.|++.++...++.+.+ ..  +. ....+..+..++.++...+.....           +
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~v~-----------~   93 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA-STEVGEMAKQYIEKSLLVPDHVIT-----------R   93 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT-TCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc-CChHHHHHHHHHHcCCCCCHHHHH-----------H
Confidence            467999999999999999999999987654432221 10  10 122333334444443333332222           2


Q ss_pred             HHHHHHH--cCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         84 TLTKLIE--QGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        84 ~i~~~~~--~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                      .+...+.  .+..+++                 |++     +....+    ...+.    ....++++|+|++|++++.+
T Consensus        94 ~l~~~l~~~~~~~~il-----------------~g~-----~~~~~~----~~~l~----~~~~~~~vi~L~~~~~~~l~  143 (246)
T 2bbw_A           94 LMMSELENRRGQHWLL-----------------DGF-----PRTLGQ----AEALD----KICEVDLVISLNIPFETLKD  143 (246)
T ss_dssp             HHHHHHHTCTTSCEEE-----------------ESC-----CCSHHH----HHHHH----TTCCCCEEEEEECCHHHHHH
T ss_pred             HHHHHHHhcCCCeEEE-----------------ECC-----CCCHHH----HHHHH----hhcCCCEEEEEECCHHHHHH
Confidence            2222221  1222333                 632     211100    01111    12367899999999999998


Q ss_pred             hcCCCC--------------------------CCc-----cc-HHHHHHHHHHHHH------H-hh-CCeEEEcCCCCHH
Q psy16874        162 RKGFGD--------------------------ERY-----EQ-TDFQRKVAENYEK------L-KD-NIWIDIDADKDID  201 (227)
Q Consensus       162 R~~~r~--------------------------~~~-----~~-~~~~~~~~~~~~~------~-~~-~~~~~Id~~~s~~  201 (227)
                      |+..+.                          +..     .. ....+.+....+.      . .. +.++.||++++ +
T Consensus       144 r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~  222 (246)
T 2bbw_A          144 RLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-N  222 (246)
T ss_dssp             HHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-H
T ss_pred             HHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-H
Confidence            874321                          111     11 2223333221111      1 11 15899999988 9


Q ss_pred             HHHHHHHHHHHHHhhhcCC
Q psy16874        202 TLGLIVKDIVIDTIKKSQF  220 (227)
Q Consensus       202 ~v~~~I~~~i~~~l~~~~~  220 (227)
                      +++++|.+.|.+.+...++
T Consensus       223 ~v~~~i~~~l~~~~~~~~~  241 (246)
T 2bbw_A          223 KIWPYVYTLFSNKITPIQS  241 (246)
T ss_dssp             HHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhhCCCCCc
Confidence            9999999999877765444

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.46  E-value=1.5e-13  Score=123.20  Aligned_cols=167  Identities=18%  Similarity=0.230  Sum_probs=95.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      .++++|+|+|++||||||+++.|++.|...++++..++        ++.++..+..+..+.+......+.    .....+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD--------gD~iR~~L~~~~~fs~~dree~~r----~i~eva  117 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD--------GDNIRQGLNKNLGFSPEDREENVR----RIAEVA  117 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec--------hHHhhhccCccccCChhhhHHHHH----HHHHHH
Confidence            36889999999999999999999999977777776654        222322222111222111100000    001233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+..|.+|++                 | |. +  ++....     .++..+......|+++|||++|++++.+|+.+
T Consensus       118 ~~~l~~G~iVI~-----------------d-~~-s--~~~~~r-----~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          118 KLFADAGLVCIT-----------------S-FI-S--PYTQDR-----NNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             HHHHHTTCEEEE-----------------E-CC-C--CCHHHH-----HHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             HHHHhCCCEEEE-----------------e-Cc-h--hhHHHH-----HHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            445567888887                 5 11 1  111111     23333333334678999999999999999874


Q ss_pred             CCCCccc-----HHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        166 GDERYEQ-----TDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       166 r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      +  .+..     ...+..+...|+... .+.++||++ .+++++.++|.+.|..
T Consensus       172 ~--ly~~aR~~~~~~~~~~~~~Ye~p~-~~dlvIDts~~s~eevv~~Il~~L~~  222 (630)
T 1x6v_B          172 G--LYKKARAGEIKGFTGIDSEYEKPE-APELVLKTDSCDVNDCVQQVVELLQE  222 (630)
T ss_dssp             S--HHHHHTTC----CBTTTBCCCCCS-SCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred             c--cchhhhhhhHHHHHHhhhhhcccC-CCcEEEECCCCCHHHHHHHHHHHHHh
Confidence            2  1110     001111222332211 145889987 6999999999998864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.46  E-value=6.9e-13  Score=106.75  Aligned_cols=164  Identities=14%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee-CCCCCCCchHHHHHHHhh-cCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN-FPDRTISTGHIIDEYLRK-KIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.+|+|+|++||||||+++.|++.+++..++.+.+. ....+..    +..++.. +....           +......+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~----i~~i~~~~ge~~f-----------r~~e~~~l  112 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTS----VAEIFEHFGESVF-----------REKETEAL  112 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSC----HHHHHHHHCHHHH-----------HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCcc----HHHHHHHhCcHHH-----------HHHHHHHH
Confidence            678999999999999999999999976443322111 0000111    1111111 10000           00011233


Q ss_pred             HHHHHc-CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         86 TKLIEQ-GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        86 ~~~~~~-~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ...... ...|+.          +++|++++              ......+        ..+++|||++|++++.+|+.
T Consensus       113 ~~l~~~~~~~Via----------~GgG~v~~--------------~~~~~~l--------~~~~vV~L~a~~e~l~~Rl~  160 (250)
T 3nwj_A          113 KKLSLMYHQVVVS----------TGGGAVIR--------------PINWKYM--------HKGISIWLDVPLEALAHRIA  160 (250)
T ss_dssp             HHHHHHCSSEEEE----------CCGGGGGS--------------HHHHHHH--------TTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHhhcCCcEEe----------cCCCeecC--------------HHHHHHH--------hCCcEEEEECCHHHHHHHHh
Confidence            333333 455655          33343333              0011222        12689999999999999986


Q ss_pred             CC----CCCccc-------HHHHHHHHHHHHHH---hhCCeEEE------------cCC-CCHHHHHHHHHHHHHHHhhh
Q psy16874        165 FG----DERYEQ-------TDFQRKVAENYEKL---KDNIWIDI------------DAD-KDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       165 ~r----~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~I------------d~~-~s~~~v~~~I~~~i~~~l~~  217 (227)
                      ++    ++....       ....+.+...|++.   ....-.+|            |++ .+++++.+.|.+.+...++.
T Consensus       161 ~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~  240 (250)
T 3nwj_A          161 AVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK  240 (250)
T ss_dssp             C----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            42    111221       01233344433332   22222344            765 89999999999999988765


Q ss_pred             c
Q psy16874        218 S  218 (227)
Q Consensus       218 ~  218 (227)
                      .
T Consensus       241 ~  241 (250)
T 3nwj_A          241 E  241 (250)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.44  E-value=7.9e-14  Score=106.54  Aligned_cols=31  Identities=26%  Similarity=0.169  Sum_probs=26.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .++++|+|+|++||||||+++.|++.++..+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~   39 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKY   39 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence            4567899999999999999999999986533

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.43  E-value=6.6e-13  Score=101.94  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=27.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH-HHhCCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY-LNKNNIP   38 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~-l~~~~~~   38 (227)
                      +++++|+|+|++||||||+++.|++. +++..++
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id   41 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE   41 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence            56889999999999999999999998 5554433

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.43  E-value=8.1e-14  Score=108.87  Aligned_cols=69  Identities=20%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCccc-HH-HHHHHHHHHHHHh----h--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQ-TD-FQRKVAENYEKLK----D--NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~-~~-~~~~~~~~~~~~~----~--~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+|.+|||++|++++.+|+..|+...+. .+ +...+...|....    .  ..+++||++++++++.++|.+.+..
T Consensus       129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          129 IWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             hcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999998544311121 11 2223333333221    1  2677899999999999999988754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.42  E-value=1.3e-12  Score=107.05  Aligned_cols=74  Identities=12%  Similarity=0.005  Sum_probs=48.7

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY--EKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ  219 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~  219 (227)
                      .+|.+|||++|++++.+|+..|.. ....+...++...+  ........++||++++++++.++|.+.+..++....
T Consensus       199 ~~d~vI~l~a~~ev~~~Rl~~R~g-~s~e~~~~ri~~q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~~~  274 (281)
T 2f6r_A          199 MVHEVWTVVIPETEAVRRIVERDG-LSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKRLP  274 (281)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHHC-CCHHHHHHHHHTSCCHHHHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHHCC
T ss_pred             hCCEEEEEcCCHHHHHHHHHHcCC-CCHHHHHHHHHHcCChHhhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999875421 11123333333211  111111237899999999999999999987765443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.42  E-value=1.8e-12  Score=101.10  Aligned_cols=71  Identities=18%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHH----HHHHHHHHHHHHHhhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDID----TLGLIVKDIVIDTIKK  217 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~----~v~~~I~~~i~~~l~~  217 (227)
                      ..|.+|||++|++++.+|+..|.. ....+..+++..   ..+.... ..++||++++++    ++.++|.+.+..++..
T Consensus       123 ~~d~vi~l~~~~e~~~~Rl~~R~~-~~~e~~~~r~~~q~~~~~~~~~-ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~~~  200 (206)
T 1jjv_A          123 LCDRILVVDVSPQTQLARSAQRDN-NNFEQIQRIMNSQVSQQERLKW-ADDVINNDAELAQNLPHLQQKVLELHQFYLQQ  200 (206)
T ss_dssp             GCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHHH-CSEEEECCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEECCHHHHHHHHHHcCC-CCHHHHHHHHHhcCChHHHHHh-CCEEEECCCCccccHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999987632 222222233321   1111111 237899999999    9999999988776653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.41  E-value=7.3e-13  Score=100.29  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=37.3

Q ss_pred             CCEEEEeecCHHHHHHhcCCCC--CCcc--c--HHHHHHHHH----HHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGD--ERYE--Q--TDFQRKVAE----NYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~--~~~~--~--~~~~~~~~~----~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      .++++||++|++++.+|+..|.  +...  +  .+.+..+..    .|...   ..++||++ .+++++.++|.+.+.
T Consensus        97 ~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~---a~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A           97 RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEI---ADVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHH---CSEEC-----CHHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhh---CCEEEECCCCCHHHHHHHHHHHHH
Confidence            3689999999999999997653  1111  1  233333322    23322   45899988 899999999888764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.40  E-value=1.4e-12  Score=103.02  Aligned_cols=72  Identities=8%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             CCCCEEEEeecCHHHHHHhcC----CCCCCcccHHHHHHHH----HHHHH----HhhC-CeEEEcCC-CCHHHHHHHHHH
Q psy16874        144 PKPDAVLLFKLNEEALQRRKG----FGDERYEQTDFQRKVA----ENYEK----LKDN-IWIDIDAD-KDIDTLGLIVKD  209 (227)
Q Consensus       144 ~~pd~vi~L~~~~e~~~~R~~----~r~~~~~~~~~~~~~~----~~~~~----~~~~-~~~~Id~~-~s~~~v~~~I~~  209 (227)
                      +.+|++|||++|++++.+|..    .|+......+....+.    ..|..    .... ..++||++ ++++++.++|.+
T Consensus       139 ~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~  218 (227)
T 1cke_A          139 PDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ  218 (227)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999999942    2221111122222232    22322    1111 45899999 899999999999


Q ss_pred             HHHHHh
Q psy16874        210 IVIDTI  215 (227)
Q Consensus       210 ~i~~~l  215 (227)
                      .+...+
T Consensus       219 ~l~~~~  224 (227)
T 1cke_A          219 YARQKL  224 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987765

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.38  E-value=6.2e-12  Score=99.98  Aligned_cols=72  Identities=14%  Similarity=0.127  Sum_probs=42.4

Q ss_pred             CCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHH-HHHHHhh---C-----CeEEEcCC-CCHHHHHHHHHH
Q psy16874        144 PKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAE-NYEKLKD---N-----IWIDIDAD-KDIDTLGLIVKD  209 (227)
Q Consensus       144 ~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~-~~~~~~~---~-----~~~~Id~~-~s~~~v~~~I~~  209 (227)
                      |..++.|||++|++++.+|..+    .+....-.+....+.+ ...+...   .     ..++||++ .+++++.+.|.+
T Consensus       144 pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~  223 (233)
T 3r20_A          144 PDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLD  223 (233)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHH
Confidence            3457999999999999998753    1222222233333322 1111111   1     23899977 799999999988


Q ss_pred             HHHHHh
Q psy16874        210 IVIDTI  215 (227)
Q Consensus       210 ~i~~~l  215 (227)
                      .+...+
T Consensus       224 ~i~~~~  229 (233)
T 3r20_A          224 LVTAQA  229 (233)
T ss_dssp             HC----
T ss_pred             HHHHhh
Confidence            876544

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.38  E-value=2.9e-12  Score=103.19  Aligned_cols=79  Identities=15%  Similarity=0.116  Sum_probs=43.9

Q ss_pred             CCEEEEeecCHHHHHHhcCCCC---CCcccHHHHHHHH----HHHHHHh----hCCeEEE----cCCCCHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGD---ERYEQTDFQRKVA----ENYEKLK----DNIWIDI----DADKDIDTLGLIVKDI  210 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~---~~~~~~~~~~~~~----~~~~~~~----~~~~~~I----d~~~s~~~v~~~I~~~  210 (227)
                      +|++|||++|++++.+|+..|.   ......+...++.    ..|+...    ...-++|    |++++++++.++|.+.
T Consensus       151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~  230 (252)
T 1uj2_A          151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI  230 (252)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred             cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence            5799999999999999986542   0122222222222    2243321    1123455    8888999999999999


Q ss_pred             HHHHhhhcC-CCCCc
Q psy16874        211 VIDTIKKSQ-FSPLE  224 (227)
Q Consensus       211 i~~~l~~~~-~~~~~  224 (227)
                      +...++... |..|+
T Consensus       231 l~~~~~~~~~~~~~~  245 (252)
T 1uj2_A          231 LNGGPSKRQTNGCLN  245 (252)
T ss_dssp             HHC------------
T ss_pred             HccchhhhhccCccc
Confidence            987776655 55544

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.36  E-value=2.3e-12  Score=114.53  Aligned_cols=163  Identities=12%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      .+++|+|+|++||||||+++.|++.++..|.++..++        ++.++..+.....+........+.    .....+.
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld--------~D~ir~~l~~~~~f~~~er~~~l~----~i~~~~~  438 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD--------GDVVRTHLSRGLGFSKEDRITNIL----RVGFVAS  438 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC--------HHHHHHHTCTTCCSSHHHHHHHHH----HHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC--------chHhhhhhcccccccHHHHHHHHH----HHHHHHH
Confidence            4789999999999999999999999998887776654        334444333222222211111000    0112344


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCC-EEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPD-AVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd-~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+..|..||+                 |-.    .++....     .....+..   .++ ++|||++|++++.+|+.+
T Consensus       439 ~~l~~G~~VI~-----------------d~~----~~~~~~r-----~~~~~~l~---~~d~~vV~L~~~~e~~~~Rl~r  489 (546)
T 2gks_A          439 EIVKHNGVVIC-----------------ALV----SPYRSAR-----NQVRNMME---EGKFIEVFVDAPVEVCEERDVK  489 (546)
T ss_dssp             HHHHTTCEEEE-----------------ECC----CCCHHHH-----HHHHTTSC---TTCEEEEEEECCGGGHHHHCCS
T ss_pred             HHHhCCCEEEE-----------------EcC----CCCHHHH-----HHHHHHhh---cCCEEEEEEeCCHHHHHHHhhc
Confidence            55667888888                 611    1111111     11111111   256 899999999999999863


Q ss_pred             CCCCccc--HHHHH---HHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        166 GDERYEQ--TDFQR---KVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       166 r~~~~~~--~~~~~---~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      +  .+.+  ...+.   .+.+.|+.. ....++||++ ++++++.++|.+.+..
T Consensus       490 ~--~~~~~~~~~i~~~~~vr~~~e~~-~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          490 G--LYKKAKEGLIKGFTGVDDPYEPP-VAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             S--HHHHC------CCBTTTBCCCCC-SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             c--ccccccHHHHHHHHhhhhccccc-cCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            2  1211  00011   011112211 1145899987 8999999999988864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.34  E-value=4.8e-12  Score=98.34  Aligned_cols=164  Identities=14%  Similarity=0.142  Sum_probs=84.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+|+|++||||||+++.|+..+...|.-+..+.        +..+...+..+..+........+.    ......
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d--------~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   90 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD--------GDNVRHGLNRDLSFKAEDRAENIR----RVGEVA   90 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--------HHHHTTTTTTTCCSSHHHHHHHHH----HHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec--------CchhhhHhhcccCcChHHHHHHHH----HHHHHH
Confidence            46889999999999999999999999986665433333        111111111111122211111000    000122


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......+..+++                 +...    +.....     ..+.....  ..+.++|||++|++++.+|..+
T Consensus        91 ~~~~~~~~~vi~-----------------~~~~----~~~~~r-----~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~  142 (200)
T 3uie_A           91 KLFADAGIICIA-----------------SLIS----PYRTDR-----DACRSLLP--EGDFVEVFMDVPLSVCEARDPK  142 (200)
T ss_dssp             HHHHHTTCEEEE-----------------ECCC----CCHHHH-----HHHHHTSC--TTSEEEEEECCCHHHHHHHCTT
T ss_pred             HHHHhCCceEEE-----------------ecCC----chHHHH-----HHHHHhcC--CCCEEEEEEeCCHHHHHHhccc
Confidence            233346666666                 2100    000000     22221111  1234689999999999999843


Q ss_pred             C------CCCcccHHHHHHHHHHHHHHhhCCeEEEcCC--CCHHHHHHHHHHHHHH
Q psy16874        166 G------DERYEQTDFQRKVAENYEKLKDNIWIDIDAD--KDIDTLGLIVKDIVID  213 (227)
Q Consensus       166 r------~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~--~s~~~v~~~I~~~i~~  213 (227)
                      +      ...+.+.   ..+...|+... ...++||++  .+++++.+.|.+.|..
T Consensus       143 ~l~~~~r~~~~~~~---~~~~~~~~~~~-~~~~~idt~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          143 GLYKLARAGKIKGF---TGIDDPYEPPL-NCEISLGREGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             SHHHHHHTTSSCSC---BTTTBCCCCCS-SCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHhcCCCCCC---CCCCCcCcCCC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            1      1111110   00111222211 156899987  4999999999988864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.34  E-value=5.3e-12  Score=97.80  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHH---HHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN---YEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      .+|.+|||++|++++.+|+..|. .+...+...++...   +..... .-++||++++++++.++|.+.+..++
T Consensus       124 ~~d~~i~l~~~~e~~~~R~~~R~-~~~~~~~~~~i~~~~~~~~~~~~-ad~vId~~~~~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          124 RLHGTLLVAAPLEERVRRVMARS-GLSREEVLARERAQMPEEEKRKR-ATWVLENTGSLEDLERALKAVLAELT  195 (203)
T ss_dssp             GSSEEEEECCCHHHHHHHHHTTT-CCTTHHHHHHHTTSCCHHHHHHH-CSEEECCSSHHHHHHHHHHHHHHSCC
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC-CCCHHHHHHHHHHCCChhHHHHh-CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999997653 23323344444331   211111 22689999999999999988886543

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=99.32  E-value=2.8e-12  Score=103.69  Aligned_cols=162  Identities=12%  Similarity=0.183  Sum_probs=99.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      .+.+|+|+|.+||||+++++.|.+.++.+|+.|..+..|..    .+..+.+                       +....
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~----eE~~~~y-----------------------lwR~~  126 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTD----EEKSHDF-----------------------LWRIE  126 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCH----HHHTSCT-----------------------THHHH
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCCh----hhhcCCH-----------------------HHHHH
Confidence            58899999999999999999999999999999998888752    1110000                       01122


Q ss_pred             HHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh-------hhhhcccC---CCCCCCEEEEeecC
Q psy16874         87 KLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI-------SWCFQPEK---GLPKPDAVLLFKLN  155 (227)
Q Consensus        87 ~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~pd~vi~L~~~  155 (227)
                      ..+ ..|.++|+                 |||||+...........+.       ..+..++.   ..+...+.+||++|
T Consensus       127 ~~lP~~G~I~IF-----------------dRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIs  189 (289)
T 3rhf_A          127 KQVPAAGMVGVF-----------------DRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNIS  189 (289)
T ss_dssp             TTCCCTTCEEEE-----------------ESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCCeEEEE-----------------eCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECC
Confidence            222 46889998                 9999997765544311111       11222222   33456689999999


Q ss_pred             HHHHHHhcCCCCCC------cc-----cHHHHHHHHHHHHHHhh----C--CeEEEcCCCCHH---HHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDER------YE-----QTDFQRKVAENYEKLKD----N--IWIDIDADKDID---TLGLIVKDIVI  212 (227)
Q Consensus       156 ~e~~~~R~~~r~~~------~~-----~~~~~~~~~~~~~~~~~----~--~~~~Id~~~s~~---~v~~~I~~~i~  212 (227)
                      .++..+|+..|.+.      +.     +.+.......+|++...    .  ||++|+++...-   .|...|.+.|.
T Consensus       190 keEQ~kR~~~R~~dP~k~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le  266 (289)
T 3rhf_A          190 KDEQKKRLIARLDDPSKHWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALG  266 (289)
T ss_dssp             HHHHHHHHHHHHHCGGGGGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            99999999754211      11     11122223333433332    2  999999984322   24444444444

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.32  E-value=1.4e-12  Score=99.22  Aligned_cols=61  Identities=8%  Similarity=0.050  Sum_probs=38.6

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      +..+|||++|++++.+|+..|+.+....  ..   ..++....  ...++||++ .+++++++.|.+.+
T Consensus       113 ~~~~v~l~~~~e~l~~R~~~r~~~~~~~--~~---~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          113 DVLWVGVRCDGAVAEGRETARGDRVAGM--AA---KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             CEEEEEEECCHHHHHHHHHHTSSSCTTH--HH---HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             cEEEEEEECCHHHHHHHHHhhCCcccch--hh---hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence            4468999999999999997654332211  11   11111111  145789987 49999988887654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.32  E-value=2e-12  Score=104.22  Aligned_cols=72  Identities=7%  Similarity=0.066  Sum_probs=43.3

Q ss_pred             CCCCEEEEeecCHHHHHHhcCC----CCCCcccHHHHHHHHHH----H-HHHhhC----CeEEEcCCC-CHHHHHHHHHH
Q psy16874        144 PKPDAVLLFKLNEEALQRRKGF----GDERYEQTDFQRKVAEN----Y-EKLKDN----IWIDIDADK-DIDTLGLIVKD  209 (227)
Q Consensus       144 ~~pd~vi~L~~~~e~~~~R~~~----r~~~~~~~~~~~~~~~~----~-~~~~~~----~~~~Id~~~-s~~~v~~~I~~  209 (227)
                      +..+++|||++|++++.+|...    ++......+....+.+.    . +.+...    ..++||++. +++++.+.|.+
T Consensus       161 ~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~  240 (252)
T 4e22_A          161 PDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALA  240 (252)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHH
Confidence            3568999999999999998743    11221112222222111    1 111111    358899885 99999999999


Q ss_pred             HHHHHh
Q psy16874        210 IVIDTI  215 (227)
Q Consensus       210 ~i~~~l  215 (227)
                      .+...+
T Consensus       241 ~i~~~~  246 (252)
T 4e22_A          241 YAQRIL  246 (252)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            887655

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.31  E-value=2.4e-12  Score=114.99  Aligned_cols=166  Identities=14%  Similarity=0.154  Sum_probs=92.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      +++++|+|+|++||||||+++.|++.|+..| .++..++        ++.++..+..+..+........+    ......
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD--------~D~ir~~l~~~~~f~~~er~~~i----~ri~~v  461 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL--------GDTVRHELSSELGFTREDRHTNI----QRIAFV  461 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE--------HHHHHHHTCTTCCCSHHHHHHHH----HHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC--------cHHHHHHhccccCCChhHHHHHH----HHHHHH
Confidence            4578999999999999999999999999866 6766655        33344333222222221111000    000124


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +......|.+||+                 |  ..+.  +...+     .++..+.... .++++|||++|++++.+|..
T Consensus       462 ~~~~~~~g~~VI~-----------------~--~is~--~~~~R-----~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          462 ATELTRAGAAVIA-----------------A--PIAP--YEESR-----KFARDAVSQA-GSFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             HHHHHHTTCEEEE-----------------E--CCCC--CHHHH-----HHHHHHHHTT-SEEEEEEECCCHHHHHHHCS
T ss_pred             HHHHHhCCCEEEE-----------------E--cCCC--cHHHH-----HHHHHHHHhc-CCeEEEEEeCCHHHHHHHhc
Confidence            4555677888888                 4  1111  11111     1121111111 14689999999999999975


Q ss_pred             CCCCCcccH-----HHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        165 FGDERYEQT-----DFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       165 ~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      ++  .+...     ..+....+.|+.. ....++||++ .+++++.++|.+.|..
T Consensus       515 r~--l~~~~~~~~i~~~~~~r~~~~~p-~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          515 RG--IYAAARRGEIKGFTGVDDPYETP-EKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             SC--HHHHHHTTSSSSCBTTTBCCCCC-SSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             cc--chhhhhHHHHHHHHhcccccccc-CCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            32  11100     0000111112111 1145889988 4999999999988864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.31  E-value=1.6e-12  Score=101.09  Aligned_cols=69  Identities=16%  Similarity=0.091  Sum_probs=46.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHH--HhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK--LKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      .+|.+|||++|++++.+|+..|+  ....+..+++...+..  ......++||++++++++.++|.+.+....
T Consensus       123 ~~~~~i~l~~~~e~~~~Rl~~R~--~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          123 NYDKLIVVYAPYEVCKERAIKRG--MSEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             GSSEEEEECCCHHHHHHHHHHTC--CCHHHHHHHHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             hCCEEEEEECCHHHHHHHHHHcC--CCHHHHHHHHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            36899999999999999997652  2223344444332211  111134789999999999988888776433

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.30  E-value=2.7e-11  Score=94.02  Aligned_cols=67  Identities=13%  Similarity=0.088  Sum_probs=40.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD--NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+..++++.+|++++.+|+..|+...+ ....+++...+.....  ..-++|+++ +++++.+++.+.|..
T Consensus       118 ~~~~v~~~~~~~e~l~~Rl~~R~~~~~-~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          118 PALSIFILPPSIEALRERLIKRRQDDT-AIIEQRLALAREEMAHYKEFDYLVVND-NFDQAVQNLIHIISA  186 (205)
T ss_dssp             TCEEEEEECSCHHHHHHHHHTCTTSCS-STHHHHHHHHHHHHTTGGGCSEEEECS-SHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhcccCCCEEEECC-CHHHHHHHHHHHHHH
Confidence            454455555579999999987654322 2233344444333321  122444444 899999999998864

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.30  E-value=2.9e-11  Score=94.22  Aligned_cols=32  Identities=25%  Similarity=0.129  Sum_probs=28.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      +.++|+|.|++||||||+++.|++.|++..++
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            35689999999999999999999999876655

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.29  E-value=2.2e-11  Score=95.20  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHH--HHHhhCCeEEEcCC-CCHHHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENY--EKLKDNIWIDIDAD-KDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~~l~  216 (227)
                      .+|.+|++++|+++..+|+..|. .+...+...++....  ++.....-++||++ ++++++..+|.+.+..++.
T Consensus       131 ~~D~vi~V~ap~e~r~~Rl~~Rd-g~s~eea~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          131 RCDRVLVVDCPVDTQIARVMQRN-GFTREQVEAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HCSEEEEEECCHHHHHHHHHHHH-CCCHHHHHHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCHHHHHHHHHhcC-CCCHHHHHHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999998653 233334444443321  11111134788999 9999999999999887764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.26  E-value=2.1e-11  Score=94.69  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=25.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|.+|+|+|++||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            678899999999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.26  E-value=1.1e-10  Score=90.69  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=43.6

Q ss_pred             CCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHH-hh-CCeEEEcCCC-CHHHHHHHHHHHHH
Q psy16874        144 PKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKL-KD-NIWIDIDADK-DIDTLGLIVKDIVI  212 (227)
Q Consensus       144 ~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~Id~~~-s~~~v~~~I~~~i~  212 (227)
                      +.+|++|||++|++++.+|+..|.. ....+..+.+..   .|... .. ..+++||+++ +++++.++|.+.+.
T Consensus       134 ~~~d~~i~l~a~~e~~~~R~~~r~~-~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          134 PEAAHKFYLTASPEVRAWRRARERP-QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             TTCSEEEEEECCHHHHHHHHHHTSS-SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEECCHHHHHHHHHhhcc-cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999865432 111222223322   12111 11 1458999995 99999999988763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.26  E-value=1.8e-11  Score=94.73  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=40.0

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHH-HHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAEN-YEKLKDNIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      .|.+||+++|++++.+|+..            ..... ++......-++||++++++++.++|.+.+..+
T Consensus       130 ~d~vi~v~a~~e~r~~Rli~------------~q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          130 CDHVITVVASRETILKRNRE------------ADRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             CSEEEEEECCHHHHHHHCSS------------HHHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHH------------hcCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999921            00111 11111114578999999999999998888755

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.25  E-value=3.8e-11  Score=93.87  Aligned_cols=169  Identities=12%  Similarity=0.163  Sum_probs=83.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFS   75 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   75 (227)
                      ++|.+|+|+||+||||||+++.|.+.++. .+..+ ...+.|..+...        ...+...+..+..+....    +.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~----~~   81 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAE----YV   81 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE----ET
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEE----Ec
Confidence            46889999999999999999999998753 22222 224434322111        112222222211000000    00


Q ss_pred             hhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee-
Q psy16874         76 ANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK-  153 (227)
Q Consensus        76 ~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~-  153 (227)
                      ...+.. ...+...+..|..+++                 |-.+               .....+....+.+ .+||+. 
T Consensus        82 ~~~yg~~~~~i~~~l~~g~~vil-----------------d~~~---------------~g~~~~~~~~~~~-~~i~i~~  128 (208)
T 3tau_A           82 GNYYGTPLEYVEEKLAAGVDIFL-----------------EIEV---------------QGAMQVRKAMPEG-IFIFLTP  128 (208)
T ss_dssp             TEEEEEEHHHHHHHHHTTCCEEE-----------------ECCH---------------HHHHHHHHHCTTS-EEEEEEC
T ss_pred             cccCCCcHHHHHHHHHcCCeEEE-----------------EeeH---------------HHHHHHHHhCCCe-EEEEEeC
Confidence            000111 1345666778877777                 5111               1111112222334 455555 


Q ss_pred             cCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHh--hC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        154 LNEEALQRRKGFGDERYEQTDFQRKVAENYEKLK--DN-IWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       154 ~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~-~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      .+++++.+|+..|+.. ...+..+++..+..+..  .. .++++|.  ++++++++|.++|...
T Consensus       129 ps~~~l~~Rl~~R~~~-~~e~i~~Rl~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~  189 (208)
T 3tau_A          129 PDLSELKNRIIGRGTE-SMEVVEERMETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE  189 (208)
T ss_dssp             TTTTTSSCC--------CCHHHHHHHHHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence            4589999999876432 22444455555443222  11 5555554  6999999999988643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.25  E-value=2.6e-11  Score=99.80  Aligned_cols=152  Identities=13%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEeeCCCCCCCchHHHHHHHhhc-C----CCCHHHHHHHHHhhhhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVNFPDRTISTGHIIDEYLRKK-I----ELPDQAAHLLFSANRWER   81 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~   81 (227)
                      +++|+|+|+|||||||+++.|++.+ +..+++.+             .++..+... .    .+........    ....
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-------------~~r~~~~~~~~g~~~~~~~~~~~~~----~~~~   64 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-------------DYRQSIMAHEERDEYKYTKKKEGIV----TGMQ   64 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-------------HHHHHHTTSCCCC---CCHHHHHHH----HHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-------------HHHHHhccCCcccccccchhhhhHH----HHHH
Confidence            4789999999999999999999864 33233222             222222110 0    1111111100    0001


Q ss_pred             hhHHHHHH---HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874         82 EPTLTKLI---EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        82 ~~~i~~~~---~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                      ...+...+   ..|..+|+                 |.+..+...+         ..+.++......++.+|||++|+++
T Consensus        65 ~~~~~~~l~~~~~g~~vi~-----------------d~~~~~~~~~---------~~l~~~~~~~~~~~~~i~l~~~~e~  118 (301)
T 1ltq_A           65 FDTAKSILYGGDSVKGVII-----------------SDTNLNPERR---------LAWETFAKEYGWKVEHKVFDVPWTE  118 (301)
T ss_dssp             HHHHHHHTTSCTTCCEEEE-----------------CSCCCCHHHH---------HHHHHHHHHTTCEEEEEECCCCHHH
T ss_pred             HHHHHHHHhhccCCCEEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCcEEEEEEECCHHH
Confidence            13455566   66777777                 8443321110         1122222222345689999999999


Q ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHHHhhC----------CeEEEcCCCCHHH
Q psy16874        159 LQRRKGFGDERYEQTDFQRKVAENYEKLKDN----------IWIDIDADKDIDT  202 (227)
Q Consensus       159 ~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~Id~~~s~~~  202 (227)
                      +.+|+..|.....+.+.+++..+.|+.....          ..+++|.++++++
T Consensus       119 ~~~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~  172 (301)
T 1ltq_A          119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAK  172 (301)
T ss_dssp             HHHHHHHCGGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBC
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCccc
Confidence            9999976643333355555555666555321          3566777766544

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.24  E-value=8.7e-11  Score=90.26  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      +.|+|+||+||||||+++.|.+.++.. ++++-+ ++.|..+..-|        +.+.....++.-+.-+.    +.-+.
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~----~~g~~   77 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ----FSGNY   77 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE----ETTEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEE----EcCce
Confidence            348999999999999999998887532 344433 56554332222        23344444432100000    00111


Q ss_pred             hhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCC-CCCEEEEeecCH
Q psy16874         79 WER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLP-KPDAVLLFKLNE  156 (227)
Q Consensus        79 ~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pd~vi~L~~~~  156 (227)
                      +.. ...+...+.+|..+++                 |               .+.+.+.++....+ .+..++.+..+.
T Consensus        78 YGt~~~~v~~~l~~g~~vil-----------------~---------------id~~g~~~~k~~~~~~~~~Ifi~pps~  125 (186)
T 1ex7_A           78 YGSTVASVKQVSKSGKTCIL-----------------D---------------IDMQGVKSVKAIPELNARFLFIAPPSV  125 (186)
T ss_dssp             EEEEHHHHHHHHHHTSEEEE-----------------E---------------CCHHHHHHHHTCGGGCCEEEEEECSCH
T ss_pred             eeeecceeeehhhCCCEEEe-----------------c---------------CCHHHHHHHHHhcccCceEEEEeCCCH
Confidence            211 2456777788888888                 4               22222222222222 444566666778


Q ss_pred             HHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh---C--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        157 EALQRRKGFGDERYEQTDFQRKVAENYEKLKD---N--IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       157 e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~--~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +++.+|+..|+...+ ....+++..+-.++..   .  ..++||.  ++++++++|.++|.
T Consensus       126 e~L~~RL~~Rg~e~~-e~i~~Rl~~a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~  183 (186)
T 1ex7_A          126 EDLKKRLEGRGTETE-ESINKRLSAAQAELAYAETGAHDKVIVND--DLDKAYKELKDFIF  183 (186)
T ss_dssp             HHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHH
Confidence            999999987653322 3344455544433321   1  4566654  68999988888763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.23  E-value=1.1e-10  Score=93.04  Aligned_cols=70  Identities=10%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             CCCEEEEeecCHHHHHHhc----CCCCCCcccHHHHHHHHH-HHHHH-------hhC-CeEEEcCC-CCHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRK----GFGDERYEQTDFQRKVAE-NYEKL-------KDN-IWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~----~~r~~~~~~~~~~~~~~~-~~~~~-------~~~-~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                      ..+++|||++|++++.+|+    ..|+......+....+.+ .+...       ... ..++||++ .+++++.++|.+.
T Consensus       152 ~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~  231 (236)
T 1q3t_A          152 QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAE  231 (236)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999996    333322121223333322 22211       111 34899998 5999999999988


Q ss_pred             HHHH
Q psy16874        211 VIDT  214 (227)
Q Consensus       211 i~~~  214 (227)
                      +...
T Consensus       232 l~~~  235 (236)
T 1q3t_A          232 AEKR  235 (236)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.22  E-value=2.5e-10  Score=90.24  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=43.1

Q ss_pred             CEEEEeecCHHHHHHhcCCCCCC-ccc-HHHHH----HHHHHHHHHhh-------CCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDER-YEQ-TDFQR----KVAENYEKLKD-------NIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~-~~~-~~~~~----~~~~~~~~~~~-------~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      .++|||++|++++.+|+..+... .++ .+.++    .-...|+.+..       ...++||++ .+++++.+.|.+.+.
T Consensus       138 ~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          138 LIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence            47999999999999999643222 111 12222    22224554321       145889987 699999999988886


Q ss_pred             H
Q psy16874        213 D  213 (227)
Q Consensus       213 ~  213 (227)
                      .
T Consensus       218 ~  218 (223)
T 3hdt_A          218 L  218 (223)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.12  E-value=2.4e-11  Score=95.42  Aligned_cols=68  Identities=13%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             CCCEEEEeecCHHHHHHhcC----CCCCCcccHHHHHHHHHH-HHHH-------hhC-CeEEEcCC-CCHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKG----FGDERYEQTDFQRKVAEN-YEKL-------KDN-IWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~----~r~~~~~~~~~~~~~~~~-~~~~-------~~~-~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                      .++++|||++|++++.+|+.    .|+......+....+... +...       ... ..++||++ .+++++.+.|.+.
T Consensus       135 ~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~  214 (219)
T 2h92_A          135 DADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAM  214 (219)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHH
Confidence            46899999999999999963    222111112233333221 1111       111 44899988 4999999999887


Q ss_pred             HH
Q psy16874        211 VI  212 (227)
Q Consensus       211 i~  212 (227)
                      +.
T Consensus       215 l~  216 (219)
T 2h92_A          215 VS  216 (219)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.06  E-value=3.1e-09  Score=81.03  Aligned_cols=28  Identities=14%  Similarity=0.170  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++.+|+|+||+||||||+++.|...+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3577999999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.04  E-value=3.7e-10  Score=89.50  Aligned_cols=28  Identities=36%  Similarity=0.446  Sum_probs=18.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH-HHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV-DYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~-~~l~   33 (227)
                      ++|.+|+|+||+||||||+++.|+ ..+.
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            457899999999999999999999 7664

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.00  E-value=5e-10  Score=91.85  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..|.+|+|.|+|||||||+++.|++.++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.98  E-value=8.3e-09  Score=79.79  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPD   46 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~   46 (227)
                      .++.+|+|.||+||||||+++.|.+.++. ...++ ..++.|.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~   59 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR   59 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence            46789999999999999999999987652 12232 3355554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.96  E-value=5.4e-11  Score=102.56  Aligned_cols=133  Identities=14%  Similarity=0.070  Sum_probs=77.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.+.+|+|+|+|||||||+++.|++.+++.+++.+.++      .+.    .                       ....+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------~~~----~-----------------------~~~~~  302 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------SWQ----R-----------------------CVSSC  302 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------SHH----H-----------------------HHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------HHH----H-----------------------HHHHH
Confidence            45789999999999999999999998765444422211      000    0                       01244


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+..+..||+                 |........+         ..+.++......+..+|||++|.+++.+|+..
T Consensus       303 ~~~l~~g~~vIi-----------------D~~~~~~~~r---------~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~  356 (416)
T 3zvl_A          303 QAALRQGKRVVI-----------------DNTNPDVPSR---------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRF  356 (416)
T ss_dssp             HHHHHTTCCEEE-----------------ESCCCSHHHH---------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHhcCCcEEE-----------------eCCCCCHHHH---------HHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHh
Confidence            455667777777                 6332211111         11111222222455799999999999999975


Q ss_pred             CCC----C-cccHHHHHHHHHHHHHHhhC----CeEEEcCC
Q psy16874        166 GDE----R-YEQTDFQRKVAENYEKLKDN----IWIDIDAD  197 (227)
Q Consensus       166 r~~----~-~~~~~~~~~~~~~~~~~~~~----~~~~Id~~  197 (227)
                      |..    . ....+.+.++.+.|+.....    .++.|+-.
T Consensus       357 R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~~~  397 (416)
T 3zvl_A          357 REMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFR  397 (416)
T ss_dssp             HHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEECCC
T ss_pred             hcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEecc
Confidence            421    1 12356666777666655432    35555544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.94  E-value=2.5e-09  Score=81.93  Aligned_cols=66  Identities=8%  Similarity=-0.035  Sum_probs=42.4

Q ss_pred             EEEEeecCHHHHHHhcCCCCCCc-ccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        148 AVLLFKLNEEALQRRKGFGDERY-EQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       148 ~vi~L~~~~e~~~~R~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      .++++.++.+++.+|+..+.... .+.+..+.+.+.+..+.....++||++ .+++++++.|.+.+..
T Consensus       108 ~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~  175 (191)
T 1zp6_A          108 HYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS  175 (191)
T ss_dssp             EEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred             EEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHHHHHHh
Confidence            58999999999999987654333 233333333333332222123567776 6889998888888763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.91  E-value=3.4e-08  Score=76.53  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .++.+|+|+|++||||||+++.|+..+...+.++...
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~   56 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence            5678999999999999999999999998777777654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.87  E-value=1.7e-08  Score=77.19  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +.+|+|+|++||||||+++.|+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc
Confidence            568999999999999999999873

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.87  E-value=1.6e-08  Score=78.65  Aligned_cols=28  Identities=39%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.+|+|+|++||||||+++.|+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5688999999999999999999999887

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.86  E-value=2.7e-08  Score=88.43  Aligned_cols=166  Identities=13%  Similarity=0.053  Sum_probs=70.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC-CCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN-IPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      .++.+|+|+|++||||||+++.|+..+...+ .++..+.        ++.+...+..+..+........+.  +  ....
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD--------gD~~~~~l~~~l~f~~~~r~~~~r--~--i~~v  434 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD--------GDIVRRHLSSELGFSKAHRDVNVR--R--IGFV  434 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES--------SHHHHHHTTSSCCCSHHHHHHHHH--H--HHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC--------CcHHHHhhccccCCCHHHHHHHHH--H--HHHH
Confidence            3678999999999999999999999997543 2333332        222222111111122211000000  0  0011


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      .......+.++++                 .........+....     +++.    ... ..++|||++|.+++.+|..
T Consensus       435 ~q~l~~~~~ivi~-----------------~~~~~~~~~r~~~r-----~lL~----~~g-~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          435 ASEITKNRGIAIC-----------------APIAPYRQTRRDVR-----AMIE----AVG-GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HHHHHHTTCEEEE-----------------CCCCCCHHHHHHHH-----HHHH----TTS-EEEEEEECC----------
T ss_pred             HHHHHhcCCEEEE-----------------ecCCccHHHHHHHH-----HHHH----HcC-CEEEEEEcCCHHHHHHhcc
Confidence            2222345666666                 21100000000010     2222    111 2479999999999999975


Q ss_pred             CCCCCcccHHHHHHHHHHHHH---Hhh--CCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        165 FGDERYEQTDFQRKVAENYEK---LKD--NIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~~---~~~--~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      +  +.+.+. ....+...+..   +..  ..-++||++ .+++++.++|.+.|..
T Consensus       488 r--~l~~~~-~~~~i~~l~~~r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~  539 (552)
T 3cr8_A          488 K--GLYAKA-RAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEH  539 (552)
T ss_dssp             ----------------------CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             c--cccccc-cHhHHHHHHhccccccCCCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            3  333211 01112222211   111  134788987 7999999998888753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.73  E-value=3.7e-07  Score=71.79  Aligned_cols=29  Identities=14%  Similarity=0.319  Sum_probs=25.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++|.+++|.||+||||||+++.|...+.
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            46788999999999999999999998765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.72  E-value=8.4e-08  Score=84.80  Aligned_cols=37  Identities=38%  Similarity=0.512  Sum_probs=33.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+.+|+++|+|||||||+++.|++.+++.++++..+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s   70 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN   70 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            4678999999999999999999999999999887665

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.70  E-value=9.5e-09  Score=82.58  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=25.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..|++|+|.|+|||||||+++.|++.++
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4578999999999999999999999886

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.68  E-value=9.3e-07  Score=68.24  Aligned_cols=28  Identities=29%  Similarity=0.297  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++.+++|.||+||||||+++.|...+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4578899999999999999999998775

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.65  E-value=9.4e-09  Score=82.71  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      ++|+|+|++||||||+++.|++.++...++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D   33 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD   33 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence            47999999999999999999999876544443

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.64  E-value=9.3e-08  Score=73.91  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=27.3

Q ss_pred             CCCCCCC-ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          1 MASQIPR-GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         1 m~~~~~~-~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      |+..+.. .++|+|+|.+||||+|+++.|.+.++..
T Consensus         3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~~~g~~   38 (202)
T 3ch4_B            3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGAD   38 (202)
T ss_dssp             CCTTBCCCSEEEEEEECTTSSHHHHHHHHHHHHCTT
T ss_pred             ccccccCCCEEEEEECCCCCChHHHHHHHHHHcCCC
Confidence            4443233 4689999999999999999999988653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.52  E-value=8e-07  Score=70.83  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +++.+|.|+|++||||||+++.|+..++..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            567899999999999999999999988654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.49  E-value=2.1e-08  Score=83.46  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      ++++|+|.||+||||||++..|++.++...++
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs   70 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN   70 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence            45689999999999999999999988753333

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.23  E-value=3.8e-05  Score=62.95  Aligned_cols=163  Identities=9%  Similarity=0.075  Sum_probs=84.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCe-EEeeCCCCCCC---------chHHHHHHHhhcCCCCHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPS-QFVNFPDRTIS---------TGHIIDEYLRKKIELPDQAAHLLF   74 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
                      +.+++|+|.||   ||+|+++.|.+.+.. -++++ .+++.|..+..         ..+.+.....++.-+.- ..   +
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~-~~---~  175 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEA-GQ---Y  175 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEE-EE---E
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEE-EE---E
Confidence            45678999998   799999999987752 23444 34565543321         12233333333321000 00   0


Q ss_pred             Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874         75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK  153 (227)
Q Consensus        75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~  153 (227)
                      ..+.+.. ...+...+.+|..+++                 |-               +.+.+.++......| ++||+.
T Consensus       176 ~g~~YGt~~~~V~~~~~~G~~vil-----------------di---------------d~~g~~~l~~~~~~p-i~IfI~  222 (295)
T 1kjw_A          176 NSHLYGTSVQSVREVAEQGKHCIL-----------------DV---------------SANAVRRLQAAHLHP-IAIFIR  222 (295)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEE-----------------CC---------------CTTHHHHHHHTTCCC-EEEEEC
T ss_pred             cCcEeeeeHHHHHHHHhcCCeEEE-----------------Ee---------------CHHHHHHHHhcccCC-eEEEEE
Confidence            0011111 2457777888888888                 51               112222222222245 888888


Q ss_pred             cC-HHHHHHhcCCCCCCcccHHHHHHHHHHH--HH-HhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        154 LN-EEALQRRKGFGDERYEQTDFQRKVAENY--EK-LKDN-IWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       154 ~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      .| .+++.+ +..|+..   .+..+++..+.  +. .... .. +|+++ +++++++++.++|...
T Consensus       223 pps~~~L~~-L~~R~t~---~~i~~rl~~a~~~e~~~~~~fd~-vivNd-~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          223 PRSLENVLE-INKRITE---EQARKAFDRATKLEQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             CSSHHHHHH-HCTTSCH---HHHHHHHHHHHHHHHHHGGGCSE-EECCS-SHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHH-HHhcCCH---HHHHHHHHHHHHHHHhccccCeE-EEECc-CHHHHHHHHHHHHHhc
Confidence            66 666665 7654321   22333444332  11 1111 34 45544 8999999988888643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.22  E-value=5.9e-06  Score=68.52  Aligned_cols=29  Identities=24%  Similarity=0.277  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++.+|.|.|++||||||+++.|...+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45779999999999999999999998874

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.22  E-value=2.6e-05  Score=63.79  Aligned_cols=166  Identities=8%  Similarity=0.057  Sum_probs=87.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEE-eeCCCCCCCc---------hHHHHHHHhhcCCCCHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQF-VNFPDRTIST---------GHIIDEYLRKKIELPDQAAHLLF   74 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
                      ..++.|+|+||   ||+|+.+.|.+.++.. ++++-+ ++.|..+..-         .+.+.....++.-+ .+..   +
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~fl-E~a~---~  170 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI-EAGQ---Y  170 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEE-EEEE---E
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceE-EEEE---E
Confidence            34567889988   5999999999988653 455544 5555433221         12334444333210 0000   0


Q ss_pred             Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874         75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK  153 (227)
Q Consensus        75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~  153 (227)
                      .-+.+.. ...+...+.+|..+++                 |               .+.+.+.++....+.| ++||+.
T Consensus       171 ~gn~YGT~~~~V~~~~~~gk~viL-----------------d---------------id~qg~~~lk~~~~~p-i~IFI~  217 (292)
T 3tvt_A          171 NDNLYGTSVASVREVAEKGKHCIL-----------------D---------------VSGNAIKRLQVAQLYP-VAVFIK  217 (292)
T ss_dssp             TTEEEEEEHHHHHHHHHHTCEEEE-----------------C---------------CCTHHHHHHHHTTCCC-EEEEEC
T ss_pred             ccceeEEehHHHHHHHHcCCcEEE-----------------e---------------ccchhhhhcccccccc-eEEEEE
Confidence            0011111 2467777888988888                 5               2223333333344455 566776


Q ss_pred             c-CHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        154 L-NEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN-IWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       154 ~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      . +.+++.+|+..++..-. .....+..+.-..+... ..+++|  .+.++++++|.++|...
T Consensus       218 PpS~e~L~~r~~~r~~e~~-~~~~~r~~k~e~e~~~~fD~vIvN--ddle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          218 PKSVDSVMEMNRRMTEEQA-KKTYERAIKMEQEFGEYFTGVVQG--DTIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             CSCHHHHHHTCTTSCTTHH-HHHHHHHHHHHHHHTTTCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCchhH-HHHHHHHHHHHHhhhhhCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence            5 56778887765433211 22333333222222222 344443  36899999888888643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.20  E-value=4.5e-05  Score=59.61  Aligned_cols=28  Identities=29%  Similarity=0.241  Sum_probs=24.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++|.+++|.||+||||||+++.|...+
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3568899999999999999999999876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.20  E-value=4.3e-06  Score=72.97  Aligned_cols=37  Identities=38%  Similarity=0.477  Sum_probs=33.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+.+|+++|.|||||||+++.|++.+++.+++++.+.
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            4668999999999999999999999999888887755

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.12  E-value=1.2e-06  Score=71.69  Aligned_cols=37  Identities=11%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++++|+|+|++||||||+++.|++.++..++++..+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~   40 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE   40 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence            5778999999999999999999999986666654444

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.06  E-value=5.9e-06  Score=64.05  Aligned_cols=38  Identities=26%  Similarity=0.500  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.+|+|.|++||||||+++.|+..+...|..+..+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~   57 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP   57 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            46789999999999999999999999986554454443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.06  E-value=6.1e-06  Score=62.08  Aligned_cols=38  Identities=24%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +.++|.|.|++||||||++..|...+...++++..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~   40 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   40 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence            35689999999999999999999999988999887653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.92  E-value=1.5e-05  Score=60.19  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+|+|.|++||||||+++.|...+...++++..+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            567999999999999999999999988888887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.90  E-value=2.1e-05  Score=59.35  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~   42 (227)
                      +++..++|.|++||||||+++.++..+. ..|..+..+
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            3467899999999999999999999886 556655443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.87  E-value=3.5e-06  Score=70.25  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ++|+|.||+||||||++..|++.++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~   34 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGE   34 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCc
Confidence            589999999999999999999998743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.86  E-value=1.3e-05  Score=65.64  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=27.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +++.+|+|.|++||||||+++.|...++..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            567899999999999999999999999753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.80  E-value=5.4e-06  Score=68.67  Aligned_cols=33  Identities=30%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      +++|+|+||+||||||++..|++.++...++++
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D   37 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD   37 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence            468999999999999999999999876554443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.74  E-value=2.1e-05  Score=59.67  Aligned_cols=25  Identities=40%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.++|.|++||||||+++.|+..++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999886

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.74  E-value=7.5e-06  Score=67.30  Aligned_cols=29  Identities=31%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .+.+|+|.||+||||||++..|++.++..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~   37 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVE   37 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence            46789999999999999999999998643

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.74  E-value=1.7e-05  Score=69.74  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=27.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh-CC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NN   36 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~   36 (227)
                      ++++|+|+|++||||||+++.|++.|+. .|
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g  424 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGG  424 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999997 53

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.73  E-value=9.1e-05  Score=61.59  Aligned_cols=39  Identities=28%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|.+|+|.|++||||||+++.|+..+...+.++.....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~  165 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS  165 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence            468899999999999999999999999888878766443

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.72  E-value=7e-05  Score=57.40  Aligned_cols=43  Identities=19%  Similarity=0.094  Sum_probs=36.1

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |..+..++.+++++|++||||||.+-.++.++...+.++..+.
T Consensus         1 ~~~~~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            1 MYRPKDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             -CCCTTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            3333456899999999999999999999999998999987765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.72  E-value=4.6e-05  Score=62.77  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=25.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++.+|.|+|++||||||+++.|+..++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999999886

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.72  E-value=2.9e-05  Score=64.17  Aligned_cols=30  Identities=30%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..+|.+|+|.|++||||||+++.|+..+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            356889999999999999999999998875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.71  E-value=4.9e-05  Score=59.37  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=32.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+..++|.|++|+||||+++.+++.+...+.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~   87 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP   87 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            4667999999999999999999999988887776654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.70  E-value=7.8e-06  Score=67.32  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ++++|+|.||+||||||++..|++.++..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~   30 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGE   30 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccc
Confidence            36789999999999999999999988743

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.67  E-value=4.2e-05  Score=56.20  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=31.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+..++|.|++||||||+++.++..+...|.++..+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~   71 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID   71 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence            4567999999999999999999998877777766654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.67  E-value=2.3e-05  Score=58.79  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKL   28 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L   28 (227)
                      ++|-+++|.|++||||||+++.+
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            46889999999999999999863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.65  E-value=2.7e-05  Score=60.23  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=24.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|.+++|.|++||||||+++.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678999999999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.65  E-value=3.3e-05  Score=58.18  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.|.|++||||||+++.|...+...++++..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~   37 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK   37 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence            46999999999999999999999998887776654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.63  E-value=8.8e-05  Score=61.07  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|.+|+|+|++||||||++..|+..+...+.++....
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            45789999999999999999999999988887876644

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.62  E-value=3.9e-05  Score=62.73  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=26.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      +.|..+.|.||||+|||++++.|++.++...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~   64 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP   64 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            3466788999999999999999999996533

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.62  E-value=0.00017  Score=59.26  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.+|+|.|++||||||+++.|+..+...+-++....
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g  137 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA  137 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            5779999999999999999999999987777776544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.61  E-value=4.8e-05  Score=56.50  Aligned_cols=27  Identities=19%  Similarity=0.342  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++-+++|.|+.||||||+++.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            568899999999999999999999987

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.60  E-value=0.00016  Score=66.30  Aligned_cols=163  Identities=9%  Similarity=0.070  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEE-eeCCCCCCCc---------hHHHHHHHhhcCCCCHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQF-VNFPDRTIST---------GHIIDEYLRKKIELPDQAAHLLF   74 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
                      ..+++|+|.||   ||+|+++.|.+.+.. -.+++-+ ++.|..+..-         .+.+...+.++.-+ .   ..-+
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~fl-E---~~~~  601 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFI-E---AGQY  601 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCce-E---EEEE
Confidence            45678999999   499999999987752 2334433 5544322211         12222333322210 0   0000


Q ss_pred             Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874         75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK  153 (227)
Q Consensus        75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~  153 (227)
                      .-+.+.. ...+...+.+|..+++                 |               .+.+.+.++......| ++||+.
T Consensus       602 ~g~~YGt~~~~v~~~~~~g~~~il-----------------d---------------i~~~~~~~l~~~~~~p-~~ifi~  648 (721)
T 2xkx_A          602 NSHLYGTSVQSVREVAEQGKHCIL-----------------D---------------VSANAVRRLQAAHLHP-IAIFIR  648 (721)
T ss_pred             CCccceeeHHHHHHHHHCCCcEEE-----------------e---------------CCHHHHHHHHhcccCC-EEEEEe
Confidence            0111111 2457777788888887                 5               1112222232222345 888888


Q ss_pred             cC-HHHHHHhcCCCCCCcccHHHHHHHHHHHH-HH-hhC-CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        154 LN-EEALQRRKGFGDERYEQTDFQRKVAENYE-KL-KDN-IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       154 ~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .| .+++.+ +..|+.   ..+..+++..+.+ +. ... -.++|+++ +++++++++.++|..
T Consensus       649 pps~~~L~~-l~~R~t---~~~~~~rl~~a~~~e~~~~~~fd~vi~Nd-~l~~a~~~l~~~i~~  707 (721)
T 2xkx_A          649 PRSLENVLE-INKRIT---EEQARKAFDRATKLEQEFTECFSAIVEGD-SFEEIYHKVKRVIED  707 (721)
T ss_pred             CCcHHHHHH-HhccCC---HHHHHHHHHHHHHHHHhccccCcEEEECc-CHHHHHHHHHHHHHh
Confidence            66 455555 655432   1233334443321 11 111 12345544 789988888888764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.60  E-value=8.7e-05  Score=56.83  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..++|.|++|+||||++..++..+...+.++..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            67899999999999999999999987777776554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.59  E-value=0.00015  Score=62.58  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +|.+|++.|++||||||++..|+..+...|.++..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~  136 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS  136 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            47899999999999999999999999999999877553

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.57  E-value=0.0001  Score=60.53  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g  135 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  135 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            46789999999999999999999999987776766544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.55  E-value=9.7e-05  Score=63.62  Aligned_cols=38  Identities=32%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +|.+|++.|++||||||++..|+..+...+.++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~  133 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA  133 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            47899999999999999999999999999999876553

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.53  E-value=0.0001  Score=56.06  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++.+++++|++||||||++-.++..+...+.++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            367899999999999999988888777677766553

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.52  E-value=9.7e-05  Score=56.49  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .+|.|.|++||||||+++.|+..+...|+.++.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g   34 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG   34 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcccCCEEEcC
Confidence            468999999999999999999988755655543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.51  E-value=0.00016  Score=56.82  Aligned_cols=38  Identities=16%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+++++|++||||||.+-.++..+...+..+..+.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~   47 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   47 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence            35789999999999999999999999988898887754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.51  E-value=0.00026  Score=57.98  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~   44 (227)
                      ++.+|+|.|+.||||||++..|+..+.. .|.++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~  142 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT  142 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            5779999999999999999999999985 7888876553

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.50  E-value=0.00011  Score=59.03  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++.+++|.||+||||||+++.|...+..
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            45779999999999999999999998865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.50  E-value=0.00013  Score=54.58  Aligned_cols=28  Identities=21%  Similarity=0.139  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+..++|.|++|+||||+++.+++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3566899999999999999999999876

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.49  E-value=0.00015  Score=60.75  Aligned_cols=37  Identities=14%  Similarity=0.088  Sum_probs=31.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+.+|+|.|+|||||||+.+.|...+...+.++..+.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~  109 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA  109 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence            3778999999999999999999998877777765543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.47  E-value=0.00017  Score=60.45  Aligned_cols=38  Identities=16%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++...|+|+|.+||||||++..|+..+...+.++..+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~  114 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA  114 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            35678999999999999999999999988888876643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.46  E-value=0.00011  Score=57.07  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.+++|.|++||||||++..++..+...+.++..+.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            35678999999999999999999977765566766654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.46  E-value=0.00017  Score=60.65  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|.+|+|.|+.||||||+++.|+..+...+-++....
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g  192 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA  192 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence            46789999999999999999999999987776765544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.46  E-value=3.7e-05  Score=65.45  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      +++|+|.||+||||||++..|++.++...++
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis   32 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVIN   32 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence            4589999999999999999999999754333

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.46  E-value=9e-05  Score=60.92  Aligned_cols=28  Identities=29%  Similarity=0.608  Sum_probs=25.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+++.+++|.|++||||||+++.|...+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3578899999999999999999999987

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.46  E-value=5e-05  Score=60.35  Aligned_cols=67  Identities=10%  Similarity=-0.024  Sum_probs=40.7

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCC---cccHHHHHHHHHHH-HH-HhhC-CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDER---YEQTDFQRKVAENY-EK-LKDN-IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~---~~~~~~~~~~~~~~-~~-~~~~-~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ..|.+|+.+|+.++..+|+.+|+..   +..... .++.... +. .... .-++|+++++++++..+|.+.+.
T Consensus       167 ~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~  239 (241)
T 1dek_A          167 GYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLK  239 (241)
T ss_dssp             SCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHh
Confidence            4689999999999999998765321   111000 0111000 00 0001 34788999999999888887764

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.45  E-value=0.0003  Score=54.66  Aligned_cols=39  Identities=18%  Similarity=0.070  Sum_probs=35.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..++.+++++|++||||||.+-.++..+...+.++..+.
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            356889999999999999999999999999999998876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.45  E-value=0.00017  Score=62.89  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .+|.+|+|.|+.||||||+++.|+..+...+-++...
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~  327 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA  327 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence            5688999999999999999999999998777676554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.42  E-value=0.00024  Score=58.77  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .++.+|+|+|++||||||++..|+..+...+.++.....
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            457899999999999999999999999888888876553

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.42  E-value=0.00021  Score=59.64  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=31.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .++.+++|.|++||||||+.+.|...+...+.++..
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i   88 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV   88 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence            568899999999999999999999988776666654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.40  E-value=0.00011  Score=62.23  Aligned_cols=28  Identities=36%  Similarity=0.545  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++.+|+|.|++||||||+++.|+..++
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            5678999999999999999999998763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.38  E-value=0.0001  Score=59.71  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|.||+||||||+++.|+..++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            999999999999999999987653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.38  E-value=8.8e-05  Score=58.69  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999998887644

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.37  E-value=0.00025  Score=57.69  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=32.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      .++-+++|.|++||||||++..|+..+... |.++..+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            467899999999999999999999988765 66776654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.35  E-value=0.00017  Score=53.83  Aligned_cols=28  Identities=18%  Similarity=0.088  Sum_probs=24.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+..++|.|++|+||||+++.+++.+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3556899999999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.35  E-value=0.00024  Score=55.83  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.++.|.|++||||||++..++..+-..+..+.++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            5678999999999999999888877766677777755

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.34  E-value=0.00011  Score=57.24  Aligned_cols=28  Identities=29%  Similarity=0.157  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-++.|.|++||||||+++.|+..+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3577999999999999999999987543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.34  E-value=0.00028  Score=57.51  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=26.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      .+..++|.|+||+||||+++.+++.+...+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~   96 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY   96 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            3457999999999999999999999977544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=58.15  Aligned_cols=28  Identities=21%  Similarity=0.056  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+.-|+|.|+||+||||+++.+++.++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~   65 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQV   65 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3456899999999999999999998754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.32  E-value=0.00028  Score=61.95  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|+|+|++||||||++..|+..+...|.++..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd  136 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC  136 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            34678999999999999999999999998888886654

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.30  E-value=0.0014  Score=53.73  Aligned_cols=25  Identities=16%  Similarity=0.034  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++.|+|+||   ||+|+.+.|.+.++.
T Consensus       144 ~~RPvVl~GP---~k~~l~~~L~~~~P~  168 (308)
T 3kfv_A          144 FKRPVVILGP---VADIAMQKLTAEMPD  168 (308)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCeEEEeCc---cHHHHHHHHHHhCcc
Confidence            3456899999   799999999887654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.30  E-value=0.00015  Score=57.68  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.|++||||||+++.++..++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.29  E-value=0.0001  Score=57.94  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+-.+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            357789999999999999998887644

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.29  E-value=0.00013  Score=57.80  Aligned_cols=28  Identities=25%  Similarity=0.457  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999999887543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.28  E-value=0.00026  Score=58.40  Aligned_cols=36  Identities=17%  Similarity=0.075  Sum_probs=30.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..++|.|++|+||||+++.+++.+...+.++..+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~   72 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   72 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            456899999999999999999999876666666554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.28  E-value=0.00019  Score=57.08  Aligned_cols=27  Identities=22%  Similarity=0.169  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-++|.|++|+||||+++.|+..++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~   71 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKV   71 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence            445899999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.26  E-value=0.00016  Score=57.51  Aligned_cols=28  Identities=25%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+.+.|+..+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999987554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.26  E-value=0.00013  Score=56.09  Aligned_cols=27  Identities=26%  Similarity=0.274  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++.|+|+|++||||||++..|++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            367899999999999999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.26  E-value=0.00023  Score=52.77  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=23.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      |..+..+...|+|.|.+||||||+++.|...
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            4333344567999999999999999998764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.26  E-value=0.00036  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ++.+|+|+|+.||||||+++.|...+....-.+.....|
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            466899999999999999999999887654455554444

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.25  E-value=0.00042  Score=55.10  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=31.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..++++.|.+||||||++..|+..+. .+.++..+.
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd   48 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN   48 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence            467899999999999999999999998 888886655

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.25  E-value=0.00031  Score=58.98  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=27.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      +-+|+|+|++||||||+.+.|...++.. +-.+....
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            4589999999999999999999988754 33333333

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.24  E-value=0.00029  Score=58.98  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .+.|+|.|++||||||+++.|++.++...
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34699999999999999999999887644

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.24  E-value=0.00044  Score=57.70  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=32.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|+|.|++||||||+++.|+..+...+.++..+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~   91 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA   91 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            46788999999999999999999999887777775543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.24  E-value=0.00016  Score=58.22  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+..+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.23  E-value=0.0011  Score=56.38  Aligned_cols=26  Identities=12%  Similarity=-0.161  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.+++|+|.||+|   +|+++.|.+.++.
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~  255 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEPD  255 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCcc
Confidence            4578899999998   8999999887653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.23  E-value=0.00038  Score=58.46  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=32.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++.++.|.|+|||||||++..++..+...+..+.++..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~   97 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA   97 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            57799999999999999999999988877777766553

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.22  E-value=0.00042  Score=56.47  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ..++|.|++|+||||+++.|++.+...+.++..+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~   81 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   81 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence            4799999999999999999999987655454443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.22  E-value=0.00051  Score=59.19  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=34.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~~   44 (227)
                      .++.+|+|.|+.||||||++..|+..+... |.+|..+..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~  137 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA  137 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            347789999999999999999999999998 999877553

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.22  E-value=0.00046  Score=56.79  Aligned_cols=36  Identities=14%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~   43 (227)
                      +..++|.|++|+|||+++..++..+. ..+.++..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~  188 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH  188 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            46789999999999999999999998 8888887655

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.22  E-value=0.00025  Score=54.97  Aligned_cols=28  Identities=32%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +..++|.|++|+||||+++.+++.+...
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4579999999999999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.21  E-value=0.00014  Score=59.00  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+-.+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            357789999999999999998887654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.21  E-value=0.00017  Score=57.98  Aligned_cols=27  Identities=30%  Similarity=0.251  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+..+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            467799999999999999999887654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.21  E-value=0.00015  Score=57.18  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.+++|.|+.||||||+.+.|+..+.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3577899999999999999999887553

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.21  E-value=0.00014  Score=57.92  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+++.|+..+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            357789999999999999998887654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.21  E-value=0.00019  Score=58.74  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+..|+|.|+||+||||+++.|+..++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            3456799999999999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.21  E-value=0.0002  Score=55.39  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +...++|.||||+||||++..|++.+..
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3446999999999999999999998853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.20  E-value=0.00018  Score=57.85  Aligned_cols=27  Identities=37%  Similarity=0.508  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+.+.|+..+
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467799999999999999999988654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.20  E-value=0.00018  Score=58.21  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|+..+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4577999999999999999998877543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.20  E-value=0.00019  Score=59.72  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..++|.||+|+||||+++.++..++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            56899999999999999999998854

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.20  E-value=0.00022  Score=57.48  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|+.||||||+++.|+..
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46779999999999999999988864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.20  E-value=0.00018  Score=57.63  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467799999999999999999887644

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.20  E-value=0.00015  Score=58.45  Aligned_cols=28  Identities=29%  Similarity=0.525  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3577999999999999999998887554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.19  E-value=0.0002  Score=57.55  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..+..++|.|++|+||||+++.+++.++.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~   90 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNF   90 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            34667999999999999999999998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.19  E-value=0.00029  Score=59.58  Aligned_cols=30  Identities=30%  Similarity=0.567  Sum_probs=26.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .++.+|+|+|++||||||+++.|...+...
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            457789999999999999999999988753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.19  E-value=0.00023  Score=54.95  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|++||||||++..++.   ..+..+.++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~   52 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD   52 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence            4578999999999999999999998   3355566554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00017  Score=62.11  Aligned_cols=32  Identities=19%  Similarity=0.083  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .|+=|.+.||||+|||++++.++..++...+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            35668999999999999999999998764433

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.18  E-value=0.00021  Score=57.60  Aligned_cols=28  Identities=29%  Similarity=0.195  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+.-++|.|+||+||||+++.+++.++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4556999999999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.18  E-value=0.00023  Score=56.85  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|-+++|.|+.||||||+.+.|+..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35778999999999999999988864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.18  E-value=0.00016  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.613  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357789999999999999999887644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.17  E-value=0.00016  Score=57.94  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            457799999999999999999887644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.17  E-value=0.00018  Score=62.03  Aligned_cols=37  Identities=32%  Similarity=0.552  Sum_probs=31.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.+|+|.|++||||||++..|+..+...|.++..+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~  134 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA  134 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3568999999999999999999999987787876644

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.00019  Score=61.69  Aligned_cols=32  Identities=19%  Similarity=0.140  Sum_probs=26.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .|+=|.+.||||+|||++++.++..++...+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            35568999999999999999999998764433

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.17  E-value=0.00029  Score=52.27  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=21.2

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |.....+...|+|.|.+||||||+++.|..
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHh
Confidence            433334456799999999999999988875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.16  E-value=0.00014  Score=56.72  Aligned_cols=27  Identities=37%  Similarity=0.602  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+..+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999887644

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.16  E-value=0.00071  Score=55.36  Aligned_cols=37  Identities=30%  Similarity=0.387  Sum_probs=33.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +.+|++.|++|+||||++..|+..+...+.++.....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~  134 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA  134 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            7789999999999999999999999888888877554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.16  E-value=0.00023  Score=57.82  Aligned_cols=27  Identities=19%  Similarity=0.157  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~   80 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSA   80 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            567999999999999999999998753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.16  E-value=0.00065  Score=55.51  Aligned_cols=38  Identities=29%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++.+|+|+|+.||||||++..|+..+...+.++.....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~  134 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence            57789999999999999999999999888888876553

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.15  E-value=0.00025  Score=57.19  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.|++||||||+++.|+..++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998765

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00019  Score=61.79  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=26.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      .|+=|.+.||||+|||++++.|+..++...+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~  244 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFI  244 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            3566899999999999999999999876433

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.13  E-value=0.00023  Score=57.35  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            457799999999999999999887644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.12  E-value=0.0002  Score=57.15  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3577899999999999999998886543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.12  E-value=0.00027  Score=56.06  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      -+++|.|+.||||||+.+.|+-.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999887543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.11  E-value=0.0002  Score=55.51  Aligned_cols=25  Identities=24%  Similarity=0.058  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++-+++|.|+.||||||+++.|+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.10  E-value=0.00024  Score=57.80  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999999854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.10  E-value=0.00021  Score=57.11  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+.+.|+..+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3577899999999999999999887553

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.09  E-value=0.00071  Score=52.24  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.+.|+|.|.+||||||+++.|...+... ..+..+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~   64 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAML   64 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence            45689999999999999999999887544 4554443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.09  E-value=0.00018  Score=62.04  Aligned_cols=32  Identities=28%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      +..|++.||||+||||+++.|++.++...+.+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v   81 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence            45699999999999999999999987644433

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.09  E-value=0.00025  Score=53.67  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.|+|++||||||+++.|+..    +.++.++.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yia   30 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIA   30 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEe
Confidence            3789999999999999998865    45666654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.09  E-value=0.00089  Score=52.48  Aligned_cols=37  Identities=14%  Similarity=0.094  Sum_probs=31.7

Q ss_pred             CCce-EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGA-FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~-~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .+++ .|++.|++|+||||++-.++..+...|.+|...
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~   40 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG   40 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence            3454 499999999999999999999999999998653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00021  Score=60.86  Aligned_cols=31  Identities=19%  Similarity=0.160  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      |+=|.+.||||+|||++++.++..++...+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            4558999999999999999999998764443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.08  E-value=0.0003  Score=59.05  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.||+||||||+.+.|+-.+.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            4577999999999999999999987543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.07  E-value=0.00022  Score=59.87  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..|+|.||||+||||+++.|++.++.
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~   77 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDV   77 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            456899999999999999999998854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.07  E-value=0.00027  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            357789999999999999999887654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.07  E-value=0.00031  Score=50.98  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=25.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQ   40 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~   40 (227)
                      +..|.|.|++|+|||++++.+++.....+.+..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            345899999999999999999987654444443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.07  E-value=0.0004  Score=52.89  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=21.7

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      |..+......|+|.|.+||||||+++.|...
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcC
Confidence            5444445567999999999999999988753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.07  E-value=0.00017  Score=57.67  Aligned_cols=29  Identities=21%  Similarity=0.148  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      -++|.|++|+||||+++.+++.++...+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            37899999999999999999988754433

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.07  E-value=0.00062  Score=57.03  Aligned_cols=38  Identities=32%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++.++.|.|++||||||++..++......+..+.++..
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            57799999999999999999999887777777766543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.07  E-value=0.0013  Score=57.03  Aligned_cols=26  Identities=12%  Similarity=-0.197  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..+++|+|.||+|+|   +++.|.+.+..
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~  247 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEPD  247 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCCC
Confidence            467889999999999   88888776543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.06  E-value=0.00026  Score=58.51  Aligned_cols=27  Identities=26%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-|+|.|+||+|||++++.+++.++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~   77 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANS   77 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence            457999999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.06  E-value=0.0003  Score=55.14  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +++.++.|.|++||||||++..|+..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35779999999999999999999885

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.05  E-value=0.00086  Score=57.58  Aligned_cols=38  Identities=29%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +|.+|+|.|+.||||||++..|+..+...+.++..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~  134 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence            47789999999999999999999999988888876553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.05  E-value=0.00036  Score=58.63  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.||+||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            467799999999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.04  E-value=0.00037  Score=58.98  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.||+||||||+.+.|+-.+.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            4577999999999999999999987543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.04  E-value=0.00039  Score=53.20  Aligned_cols=27  Identities=33%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .++|.|++|+||||+++.+++.+...+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~   66 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGEN   66 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            499999999999999999999886543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.04  E-value=0.00038  Score=51.56  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=21.4

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |.........|+|.|.+||||||+++.|..
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhc
Confidence            333333456799999999999999988864

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.04  E-value=0.0052  Score=50.82  Aligned_cols=80  Identities=13%  Similarity=-0.068  Sum_probs=45.8

Q ss_pred             hcccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHH-HHHHHHH---hhC-CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        137 FQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKV-AENYEKL---KDN-IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       137 ~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~-~~~~~~~---~~~-~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .++....+.|-.|+.+-.+.+++.+|+..|+...+  +.++.. ..+-...   ... .+++||.  +.+++++++.++|
T Consensus       243 ~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~--~rl~~al~~ae~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI  318 (337)
T 4dey_A          243 AQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQA--KHLNVQMVAADKLAQCPPELFDVILDEN--QLEDACEHLADYL  318 (337)
T ss_dssp             GGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHH--TTHHHHHHHHHHHHHSCGGGCSEEECCS--SHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHH--HHHHHHHHHHHHHHhhCcccCCEEEECC--CHHHHHHHHHHHH
Confidence            33444445564455555568999999987654221  111111 1111111   111 5566544  6899999999999


Q ss_pred             HHHhhhcCC
Q psy16874        212 IDTIKKSQF  220 (227)
Q Consensus       212 ~~~l~~~~~  220 (227)
                      ..++.....
T Consensus       319 ~~~~~~~h~  327 (337)
T 4dey_A          319 EAYWKATHP  327 (337)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHhccCC
Confidence            998877554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.04  E-value=0.00072  Score=56.77  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++.++.|.|+|||||||++..++......+.+|.++..
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            56799999999999999999999888777778877553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.03  E-value=0.0005  Score=51.48  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3556799999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.00039  Score=58.52  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++-+++|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            457799999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.03  E-value=0.0004  Score=58.46  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+++.|+-.+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            467899999999999999998888644

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.02  E-value=0.00062  Score=51.32  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+...|+|.|.+||||||+++.|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44667999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.02  E-value=0.00032  Score=57.25  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.|+.||||||+.+.|+..+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999988654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.01  E-value=0.00041  Score=58.59  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|.|++||||||+.+.|+-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            467799999999999999999998654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.00  E-value=0.00049  Score=52.97  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +|+++|+|+||||||+.+..+....
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~   29 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAND   29 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6789999999999999987765443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.99  E-value=0.0005  Score=57.42  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC---CCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN---NIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~---~~~~~~~   42 (227)
                      ..+..++|.|++|+||||+++.+++.+...   +..+..+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i   82 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI   82 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            346689999999999999999999988654   4444443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.99  E-value=0.00036  Score=58.56  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|.|++||||||+.+.|+-.+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            357789999999999999999998654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.99  E-value=0.00028  Score=58.04  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|...+.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            4678999999999999999998886543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.99  E-value=0.00045  Score=57.16  Aligned_cols=25  Identities=24%  Similarity=0.114  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++-|+|.||||+|||++++.+++.+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4678999999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00027  Score=61.08  Aligned_cols=32  Identities=22%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .|+=|++.||||+|||++++.|+..++...+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            45668999999999999999999998764433

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.97  E-value=0.00039  Score=58.48  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +..++|.|++||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            66899999999999999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.96  E-value=0.00054  Score=55.27  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..++|.|++||||||+.+.|.....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3589999999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.96  E-value=0.00042  Score=57.23  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++-.+++|+|+.||||||+.+.|....
T Consensus         2 ~~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            2 NPIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CcccEEEEEecCCCCHHHHHHHHHhhc
Confidence            346789999999999999999998753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.95  E-value=0.00031  Score=53.79  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .++..|+|.|++||||||+.+.|..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4577899999999999999988764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.95  E-value=0.00034  Score=58.54  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            467799999999999999999988644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.95  E-value=0.00061  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|++|+||||+.+.|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.94  E-value=0.00048  Score=57.60  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.94  E-value=0.00088  Score=56.12  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~   43 (227)
                      +.++|.|++|+||||+++.+++.+... +..+..+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            389999999999999999999998765 45555544

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.00045  Score=57.06  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=26.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|..++|.|+||+|||++++.+.+.+..
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45778999999999999999999999974

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.94  E-value=0.00065  Score=50.69  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+..-|+|.|.+||||||+++.|..
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc
Confidence            3446799999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.93  E-value=0.00043  Score=55.67  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +-+++|.|+.||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999987654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.93  E-value=0.00043  Score=58.45  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            357789999999999999999998654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.00042  Score=59.35  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .|+=|.+.||||+|||++++.++..++...+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            35569999999999999999999998764443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.92  E-value=0.00078  Score=56.47  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=24.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+..++|.|++|+||||+++.+++.+..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~   71 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEE   71 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999998854

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.92  E-value=0.00035  Score=58.90  Aligned_cols=27  Identities=33%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..|+|.|+||+||||+++.|++.++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~   98 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDI   98 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999998853

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.91  E-value=0.0016  Score=50.60  Aligned_cols=38  Identities=13%  Similarity=0.008  Sum_probs=29.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..|.+.+++|++||||||.+-.++..+...+.++..+.
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k   63 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK   63 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence            46889999999999999955555677777788886654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.91  E-value=0.00054  Score=55.30  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +++.++.|.|++||||||++..++..+..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            35779999999999999999999986653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.91  E-value=0.0011  Score=55.48  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=25.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..+..++|.|++|+||||+++.+++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34667999999999999999999998854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.89  E-value=0.00056  Score=58.14  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .++-+++|.||+||||||+.+.|+..+
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            457799999999999999999998643

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.89  E-value=0.0012  Score=54.37  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++-+++|.|.||+||||++..++......+.++.++.
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            45779999999999999999999988877776776655

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.89  E-value=0.00063  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++..|+|.|.+||||||+.+.|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            467799999999999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.89  E-value=0.00092  Score=49.02  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++...|+|.|.+||||||+++.|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567799999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.88  E-value=0.00044  Score=58.20  Aligned_cols=28  Identities=36%  Similarity=0.317  Sum_probs=24.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++.+++|.|++||||||+++.|...++.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4678999999999999999999887654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.86  E-value=0.00077  Score=51.40  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=22.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |.........|+|.|.+||||||+.+.|..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhc
Confidence            543333456799999999999999998875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.86  E-value=0.00076  Score=51.07  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ..|+|.|++||||||+++.|...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.85  E-value=0.00034  Score=58.66  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            457799999999999999999998654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.85  E-value=0.0009  Score=51.84  Aligned_cols=28  Identities=36%  Similarity=0.356  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +...|+|.|.+||||||++..|...+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4567999999999999999999987644

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.85  E-value=0.0004  Score=58.21  Aligned_cols=27  Identities=26%  Similarity=0.225  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-|+|.|+||+||||+++.+++.++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~  110 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANS  110 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            345889999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.85  E-value=0.00097  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.093  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999999875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.83  E-value=0.00084  Score=51.03  Aligned_cols=24  Identities=17%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|++||||||+.+.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456999999999999999998863

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.83  E-value=0.00079  Score=51.68  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ....|+|.|.+||||||+++.|...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999998863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.83  E-value=0.00073  Score=59.93  Aligned_cols=28  Identities=29%  Similarity=0.509  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++..++|.||||+||||+++.|+..++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4678999999999999999999998854

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.83  E-value=0.00064  Score=51.11  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999998753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.82  E-value=0.00083  Score=53.61  Aligned_cols=36  Identities=19%  Similarity=0.128  Sum_probs=28.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +..|+|.|++|+|||++++.+++.+...+.++..+.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            345889999999999999999998765555655543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.81  E-value=0.001  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999988875

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.80  E-value=0.00087  Score=58.09  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-++|.||||+||||+++.+++.++.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~   89 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGS   89 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence            456899999999999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.80  E-value=0.00071  Score=56.18  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ++|.||+|+||||+++.+++.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~   73 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGK   73 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCC
Confidence            8999999999999999999998654

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.79  E-value=0.0023  Score=50.22  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+.+.+++|++||||||.+-.++.++...+.++..+.
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            4789999999999999999999999988999988766

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.79  E-value=0.00069  Score=50.38  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++...|+|.|.+||||||+++.|..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            3456799999999999999988874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.79  E-value=0.00052  Score=51.18  Aligned_cols=30  Identities=20%  Similarity=0.131  Sum_probs=12.7

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |..+......|+|.|.+||||||+++.|..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC-----------
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHh
Confidence            544333456799999999999999998874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.78  E-value=0.0011  Score=49.05  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567799999999999999988864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.78  E-value=0.00077  Score=56.58  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++.+++|.|++||||||+++.|...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc
Confidence            3568999999999999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.78  E-value=0.001  Score=48.57  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ....|+|.|.+||||||+++.|..
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHc
Confidence            355699999999999999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.78  E-value=0.0011  Score=48.90  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+...|+|.|.+||||||+++.|..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            4456799999999999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.77  E-value=0.00073  Score=57.99  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CCceE--EEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAF--IVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~--I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++|-+  ++|.|++||||||+++.|...
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            45667  999999999999999999764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.77  E-value=0.00072  Score=56.59  Aligned_cols=27  Identities=30%  Similarity=0.154  Sum_probs=24.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++.++.|.|++||||||++..++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.77  E-value=0.00087  Score=54.87  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .++.+|+|.|.+||||||+.+.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            4566899999999999999999875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.77  E-value=0.0009  Score=49.58  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +..-|+|.|.+|+||||+++.+..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999998876

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.75  E-value=0.00061  Score=56.34  Aligned_cols=27  Identities=30%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~   81 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSA   81 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999988654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.74  E-value=0.00097  Score=49.23  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.74  E-value=0.0011  Score=47.99  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|++.|.+||||||+++.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999998753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.74  E-value=0.00083  Score=56.30  Aligned_cols=28  Identities=21%  Similarity=0.106  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+.-|+|.|++|+||||+++.+++.++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~  143 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGA  143 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3567999999999999999999998743

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.74  E-value=0.0011  Score=49.25  Aligned_cols=25  Identities=24%  Similarity=0.048  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++...|+|.|.+|+||||+++.+..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4456799999999999999988875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.00068  Score=58.87  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=24.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|.+++|.|+.||||||+++.|+..+.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            4578899999999999999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.74  E-value=0.0011  Score=47.98  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +.|++.|.+||||||+++.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.0011  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999988876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.73  E-value=0.00097  Score=55.21  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|.|++|+||||+++.+++.+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELYG   84 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998763

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.73  E-value=0.0012  Score=47.97  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            46699999999999999998875

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.73  E-value=0.0017  Score=54.69  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++.++.|.|+|||||||++..++......+.+|.++..
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~  110 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA  110 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence            46789999999999999999999888777778877654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.73  E-value=0.0012  Score=49.70  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            35699999999999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.73  E-value=0.00091  Score=54.83  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+.+++|.|++||||||+++.|. .+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            36789999999999999999998 43

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.71  E-value=0.0014  Score=48.70  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999998853

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.71  E-value=0.0012  Score=56.96  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~   43 (227)
                      +..++|.|++|+||||+++.++..+...  +.++..+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            4568999999999999999999988654  55555543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.70  E-value=0.001  Score=55.25  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|.|++|+||||+++.|++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999966

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.70  E-value=0.0011  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999999853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.69  E-value=0.001  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+|.|+.||||||+++.|.-.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            789999999999999999988764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.69  E-value=0.002  Score=57.56  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..+++|.|+||+||||++..|...+...+.++....
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            457899999999999999999999988888876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.68  E-value=0.0012  Score=48.20  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999988875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.68  E-value=0.0013  Score=49.64  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +..-|+|.|.+||||||+++.|..
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            356799999999999999998876

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.67  E-value=0.0012  Score=50.13  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            455799999999999999999886

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.67  E-value=0.0011  Score=56.76  Aligned_cols=26  Identities=19%  Similarity=0.098  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+.+++|.|++||||||+.+.|...+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            34589999999999999999998743

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.65  E-value=0.0015  Score=47.53  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999876

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.65  E-value=0.0013  Score=48.07  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...-|+|.|.+||||||+++.|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            345699999999999999988875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.65  E-value=0.001  Score=58.53  Aligned_cols=26  Identities=27%  Similarity=0.156  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +..++|.|++|+||||+++.+++.++
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~  102 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELG  102 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999884

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.65  E-value=0.0026  Score=55.04  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~   44 (227)
                      +++-+++|.|+||+||||++..++..+.. .|.+|.++..
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            45779999999999999999999998865 5778877653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.65  E-value=0.00059  Score=56.67  Aligned_cols=28  Identities=32%  Similarity=0.509  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+.+++|.|++||||||+++.|...+..
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3568999999999999999999987654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.64  E-value=0.0015  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.152  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +..-|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            345699999999999999998874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.63  E-value=0.0014  Score=50.36  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +...|+|.|++||||||+++.|...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999998864

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.63  E-value=0.0036  Score=47.85  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+.+.++.|++||||||.+-.....+...+..+..+.
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k   55 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   55 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence            3779999999999999777777777778888887765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.63  E-value=0.0016  Score=53.16  Aligned_cols=25  Identities=36%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++|.|++|+||||+++.+++.+..
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~   72 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFG   72 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcC
Confidence            4899999999999999999998754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.63  E-value=0.0013  Score=54.90  Aligned_cols=28  Identities=32%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +..++|.|++|+||||+++.+++.+...
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4568999999999999999999988653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.0021  Score=50.34  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=28.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~~   43 (227)
                      ++.++.|.|+||+||||+|-.++.+. ...+.++.++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            46799999999999999998877543 33466676644

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.62  E-value=0.0013  Score=48.49  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..|+|.|.+||||||+++.|..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999998874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.62  E-value=0.0015  Score=49.11  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +.-|+|.|++|+||||++-.|.+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999988877

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.62  E-value=0.0014  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +..-|+|.|.+||||||+++.|..
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.61  E-value=0.0014  Score=49.25  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+.+.|..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.0014  Score=49.49  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +...|+|.|.+||||||+++.|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3456999999999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.59  E-value=0.001  Score=49.40  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      ++...|+|.|.+||||||+.+.|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            356779999999999999997775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.58  E-value=0.0013  Score=53.91  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +++.+|+|+|.+||||||+.+.|..
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4456899999999999999998864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.58  E-value=0.0011  Score=48.30  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.58  E-value=0.0012  Score=53.97  Aligned_cols=24  Identities=17%  Similarity=0.237  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +.+++|.|++||||||+.+.|...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            568999999999999999888753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.58  E-value=0.0014  Score=47.83  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ..-|+|.|.+||||||+++.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456999999999999999998753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.57  E-value=0.0019  Score=49.35  Aligned_cols=25  Identities=20%  Similarity=-0.009  Sum_probs=21.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++...|+|.|.+|+||||+++.|..
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4456799999999999999988875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.57  E-value=0.0028  Score=52.80  Aligned_cols=39  Identities=13%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .++-+++|.|.||+||||++..++......+.+|.++..
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            356799999999999999999999988878888877653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.57  E-value=0.0017  Score=47.78  Aligned_cols=24  Identities=13%  Similarity=0.026  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            456999999999999999998763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.56  E-value=0.0016  Score=48.63  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+...|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999988864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.56  E-value=0.0012  Score=57.59  Aligned_cols=26  Identities=27%  Similarity=0.231  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .-|+|.||||+||||+++.++..++.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~   75 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANV   75 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34889999999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.56  E-value=0.0017  Score=47.42  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45699999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.55  E-value=0.0014  Score=57.99  Aligned_cols=28  Identities=25%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +.+|-+++|.|+.||||||+++.|+-.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3467899999999999999999998644

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.54  E-value=0.0016  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHcC
Confidence            345799999999999999998875

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.54  E-value=0.0014  Score=54.16  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++.++.|.|+||+||||++..++...
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~  147 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEAL  147 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhC
Confidence            35678999999999999999998873

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.54  E-value=0.0013  Score=49.26  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.53  E-value=0.0016  Score=47.46  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34599999999999999998875

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.53  E-value=0.0019  Score=48.60  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            45699999999999999998876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.52  E-value=0.0014  Score=57.37  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.|+||+||||+++.|+..++
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.52  E-value=0.0021  Score=55.85  Aligned_cols=27  Identities=26%  Similarity=0.176  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ...++|.|+||+||||+++.|++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            345789999999999999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.52  E-value=0.0021  Score=48.66  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            35699999999999999998875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.51  E-value=0.001  Score=54.43  Aligned_cols=26  Identities=27%  Similarity=0.225  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +..++|.|++|+||||+++.+++.++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999999885

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.50  E-value=0.0016  Score=56.41  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..++|.|+||+||||+++.|++.++.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            45899999999999999999998754

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.49  E-value=0.00094  Score=56.55  Aligned_cols=27  Identities=26%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-|+|.|++|+|||++++.+++.++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~  174 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNA  174 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcC
Confidence            467999999999999999999988654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.49  E-value=0.0019  Score=47.80  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            34699999999999999988875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0023  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...-|+|.|.+||||||+.+.|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            356799999999999999999876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.49  E-value=0.0021  Score=47.76  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            45699999999999999998875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.49  E-value=0.0019  Score=53.39  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC------CCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN------NIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~------~~~~~~~~   43 (227)
                      .+.++.|.|+|||||||++..++......      +..+.++.
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~  148 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID  148 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            46799999999999999999998865332      44565555

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.49  E-value=0.0015  Score=56.49  Aligned_cols=25  Identities=24%  Similarity=0.114  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +.-|+|.||||+||||+++.++..+
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            4678999999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.48  E-value=0.0019  Score=48.33  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            346999999999999999888653

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.48  E-value=0.0024  Score=50.10  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .|+|.|..|+||||++..|+..+...|.+|..++.
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~   36 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDG   36 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            37779999999999999999999999999876553

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.47  E-value=0.0019  Score=51.83  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+.|+|.|++||||||+.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.47  E-value=0.0015  Score=58.32  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=25.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|.+++|.|++||||||+++.|...+..
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46779999999999999999999886653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.47  E-value=0.0029  Score=52.70  Aligned_cols=38  Identities=21%  Similarity=0.072  Sum_probs=29.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh------CCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK------NNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~------~~~~~~~~~   43 (227)
                      +++.++.|.|++||||||++..++...-.      .+-.+.++.
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~  163 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID  163 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            46789999999999999999999886322      344555554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.002  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.076  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ..|+|.|.+|+||||+++.|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.47  E-value=0.00058  Score=56.15  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++.+++|.|++||||||+++.|...+
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            46789999999999999999887543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.47  E-value=0.0012  Score=58.15  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+..|+|+|++||||||+++.|...+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            466799999999999999999987664

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.46  E-value=0.0017  Score=47.51  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~   29 (227)
                      .-|+|.|.+||||||+++.|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999886

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.45  E-value=0.0023  Score=48.02  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999998875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.45  E-value=0.002  Score=54.76  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +++..|.|.|++||||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.45  E-value=0.0019  Score=57.17  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+++.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998644

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.45  E-value=0.001  Score=54.83  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..+.|.|+||+|||++++.+++.++.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35889999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.44  E-value=0.0016  Score=58.17  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|.+++|.|++||||||+++.|...+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            4677999999999999999999887553

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.44  E-value=0.0019  Score=47.13  Aligned_cols=21  Identities=19%  Similarity=0.240  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~   29 (227)
                      .-|+|.|.+||||||+++.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            358999999999999998885

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.43  E-value=0.002  Score=51.15  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+.+.|..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            346799999999999999998874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.43  E-value=0.0021  Score=47.93  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999988875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.43  E-value=0.002  Score=48.65  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+.+.|..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999998875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.43  E-value=0.0022  Score=47.65  Aligned_cols=24  Identities=21%  Similarity=0.104  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            456799999999999999988875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.42  E-value=0.0023  Score=47.31  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45699999999999999998875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.42  E-value=0.0034  Score=54.25  Aligned_cols=38  Identities=21%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++-+++|.|.||+||||++-.++......+.+|.++.
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            35779999999999999999999998877788887765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.42  E-value=0.0029  Score=47.43  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.+..
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999988765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0021  Score=57.77  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            467899999999999999999998654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.41  E-value=0.0019  Score=52.45  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++|.|++|+||||+++.+++.+..
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~   64 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFG   64 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcC
Confidence            3899999999999999999998743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.41  E-value=0.0023  Score=47.79  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ....|+|.|.+||||||+++.|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999998763

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.41  E-value=0.0024  Score=48.41  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHh
Confidence            345799999999999999998875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.41  E-value=0.0045  Score=53.39  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~   43 (227)
                      +++-+++|.|+||+||||++-.++..... .+.+|.++.
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            45779999999999999999999998875 477887765

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.40  E-value=0.0032  Score=45.94  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+.+|.|+.||||||+.+.|.-.+.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            45789999999999999999887663

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.40  E-value=0.0023  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.40  E-value=0.0024  Score=47.75  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999988874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.39  E-value=0.0026  Score=47.81  Aligned_cols=24  Identities=17%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            456999999999999999888753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.39  E-value=0.0022  Score=52.52  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+.. .+...|+|.|.||+||||+.+.|..
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            5554 3445799999999999999999874

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.39  E-value=0.0051  Score=48.95  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|+|.|..|+||||++-.|+..+...|.+|..++.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~   37 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence            467788999999999999999999988999876543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.38  E-value=0.0019  Score=52.98  Aligned_cols=27  Identities=33%  Similarity=0.324  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+.++.+.|++|+||||+++.+++.++
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            356788899999999999999999874

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.38  E-value=0.0016  Score=55.45  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++.++.|.|++||||||++..|+-.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Confidence            4678999999999999999977643

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.36  E-value=0.0022  Score=52.19  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=22.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|.|++|+||||+++.+++.+..
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~   68 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLG   68 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcC
Confidence            899999999999999999998754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.35  E-value=0.0044  Score=53.65  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      .++|.|++||||||++..+...+...+.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999988776

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.35  E-value=0.0009  Score=48.41  Aligned_cols=25  Identities=16%  Similarity=0.017  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .-|.|.|++|+|||++++.+++...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3488999999999999988887543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.35  E-value=0.0041  Score=52.58  Aligned_cols=36  Identities=14%  Similarity=0.016  Sum_probs=30.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ...++|.|++||||||+++.|...+...+..+..++
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            446889999999999999999998877787776665

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.34  E-value=0.0024  Score=48.87  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +...|+|.|.+||||||+++.|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999988763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.33  E-value=0.0045  Score=54.59  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .++-++.|.|++||||||++..++..+...|-++..+
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~  315 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILF  315 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            3567899999999999999999998877666666443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.33  E-value=0.0026  Score=46.24  Aligned_cols=22  Identities=41%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      -|+|.|.+|+||||+++.|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999998753

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=96.33  E-value=0.0067  Score=49.53  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             CCceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ..+++|+|+|+ +|+||||++..|+..+...|.+|..++.
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~  141 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA  141 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence            34678888886 7999999999999999999999877653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.33  E-value=0.001  Score=61.47  Aligned_cols=29  Identities=21%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .|+=|++.||||+|||++++.++..++..
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~  265 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAF  265 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            45679999999999999999999887653

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.33  E-value=0.0061  Score=49.21  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|+|.|..|+||||++-.|+..|...|.+|..++
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD   37 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            56888999999999999999999998899986654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.31  E-value=0.0064  Score=50.04  Aligned_cols=38  Identities=13%  Similarity=0.071  Sum_probs=34.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ..++|+|.|--|+||||.+-.|+..|...|.+|..++.
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~   84 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC   84 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            56799999999999999999999999999999977553

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.30  E-value=0.0027  Score=47.80  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ....|+|.|.+||||||+++.|..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999988764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.29  E-value=0.0018  Score=52.05  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..|+|.||||+|||+++..|+..+..
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            46999999999999999999996543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.29  E-value=0.0032  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            34699999999999999998875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.28  E-value=0.003  Score=47.69  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      +...|+|.|.+||||||+++.|.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999998875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.28  E-value=0.0029  Score=47.64  Aligned_cols=24  Identities=25%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+|+||||+++.|...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999988763

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.26  E-value=0.0023  Score=48.57  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      ...|+|.|.+||||||+++.|.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999998874

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.26  E-value=0.001  Score=55.11  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++|.|++|+|||++++.+++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            489999999999999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.26  E-value=0.0033  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..|+|.|.+||||||+++.|..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999998875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.26  E-value=0.0024  Score=48.49  Aligned_cols=23  Identities=43%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|++.|.+||||||+.+.|..
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45699999999999999988863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.26  E-value=0.0022  Score=47.86  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .|+|.|.+||||||+++.|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.25  E-value=0.0031  Score=48.47  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            345799999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.25  E-value=0.0029  Score=54.61  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=25.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..+|-++.|.|++||||||+++.|+....
T Consensus       154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            35678899999999999999999998754

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=96.23  E-value=0.0041  Score=49.38  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             CCCCCCCceEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          1 MASQIPRGAFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         1 m~~~~~~~~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      |..  +++++|+|. +..|+||||++-.|+..+...|.+|..++.
T Consensus         1 m~~--~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   43 (257)
T 1wcv_1            1 MLR--AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDL   43 (257)
T ss_dssp             ------CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCC--CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEEC
Confidence            444  456778776 677999999999999999988999977663

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.22  E-value=0.0034  Score=48.73  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999988865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.22  E-value=0.002  Score=57.85  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|...+.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            5678999999999999999998876543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.22  E-value=0.0026  Score=47.37  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999988875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.22  E-value=0.0017  Score=60.26  Aligned_cols=20  Identities=50%  Similarity=0.868  Sum_probs=18.5

Q ss_pred             CCceEEEEEcCCCCcHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQA   25 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~   25 (227)
                      |+..+++|+|++|||||||+
T Consensus        34 P~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           34 PRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             ESSSEEEEESSTTSSHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHH
Confidence            56789999999999999998

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.22  E-value=0.0035  Score=47.76  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45799999999999999998874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.20  E-value=0.0015  Score=58.26  Aligned_cols=28  Identities=21%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|...+.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4678999999999999999988776543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.20  E-value=0.0028  Score=55.87  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHH--HHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKK--LVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~--L~~~l~   33 (227)
                      +++-+++|.|++||||||+++.  +.-.+.
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            4577999999999999999999  444444

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.19  E-value=0.0034  Score=54.72  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      -+++|.|+.||||||+++.|+-.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            68999999999999999999987654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.18  E-value=0.0027  Score=57.00  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|+.||||||+.+.|+-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            567899999999999999999998644

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.18  E-value=0.0031  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            456799999999999999999975

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=96.17  E-value=0.0096  Score=47.86  Aligned_cols=39  Identities=21%  Similarity=0.118  Sum_probs=32.8

Q ss_pred             CCceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ..+++|+|+|+ +|+||||++..|+..+...|.+|..++.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~  119 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG  119 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            34678888876 8999999999999999999999877553

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.17  E-value=0.0036  Score=47.73  Aligned_cols=24  Identities=21%  Similarity=0.104  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.+..
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            356799999999999999988875

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=96.17  E-value=0.0084  Score=46.96  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=32.8

Q ss_pred             CceEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.+.|.|+|. +|+||||++-.|.+.+...|+++..++
T Consensus         3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            3456889998 899999999999999999999998865

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.16  E-value=0.0066  Score=55.88  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .++|.|++|+|||++++.|++.+...+.++..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i  555 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI  555 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence            699999999999999999999986555555443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.16  E-value=0.0032  Score=53.16  Aligned_cols=28  Identities=29%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             CceEEEE--EcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVF--EGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i--~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+..++|  .|++|+||||+++.+.+.+..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            4556777  999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.15  E-value=0.0034  Score=47.66  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45699999999999999999874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.15  E-value=0.0037  Score=47.25  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +...|+|.|.+||||||+++.|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999998874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.15  E-value=0.0036  Score=52.31  Aligned_cols=28  Identities=18%  Similarity=0.041  Sum_probs=24.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-.+.|.|+.||||||+.+.|+....
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4677899999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.14  E-value=0.0043  Score=57.14  Aligned_cols=27  Identities=26%  Similarity=0.176  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +..++|.|+||+||||+++.|++.+..
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence            446899999999999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.14  E-value=0.0026  Score=56.28  Aligned_cols=28  Identities=36%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+..+.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3577899999999999999999987554

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.14  E-value=0.0031  Score=48.17  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            45699999999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.13  E-value=0.0038  Score=47.41  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999988876

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.12  E-value=0.003  Score=51.69  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +..|+|.|++|+|||++++.+.+.....+.+...
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~   58 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVT   58 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE
Confidence            4458899999999999999999976544444433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0042  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .-|+|.|.+||||||+++.|...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            46999999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.11  E-value=0.0038  Score=47.00  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|.|.+||||||+++.|..
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4599999999999999999874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.11  E-value=0.0085  Score=45.43  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      ++|+|. +..|+||||++-.|+..+...|.+|..++.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~   38 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT   38 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            456666 678899999999999999999999987763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0041  Score=47.45  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ...|+|.|.+||||||+++.|...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346999999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.10  E-value=0.0036  Score=46.84  Aligned_cols=25  Identities=36%  Similarity=0.305  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .-|+|.|.+||||||+++.|...+.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4699999999999999988876544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.10  E-value=0.003  Score=47.36  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +...|+|.|.+||||||+++.|...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999888754

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=96.10  E-value=0.0086  Score=46.18  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=29.5

Q ss_pred             eEEEEEcC-CCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGC-DRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~-~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.|+|+|. .|+||||++-.|+..+...|.+|..++
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d   37 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            35666664 799999999999999999999987764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.10  E-value=0.0039  Score=50.23  Aligned_cols=23  Identities=26%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            45699999999999999999975

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.10  E-value=0.0022  Score=57.36  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|++||||||+++.|...+.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            4577999999999999999988876543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.09  E-value=0.0046  Score=51.99  Aligned_cols=24  Identities=25%  Similarity=0.265  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+|+|+.||||||+.+.|.-.+-
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            788999999999999999986654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.09  E-value=0.0057  Score=56.27  Aligned_cols=30  Identities=23%  Similarity=0.190  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .+..++|.|+||+||||+++.|++.+....
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~  235 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGD  235 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence            455689999999999999999999986543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.09  E-value=0.0041  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+||||||+++.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999988865

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.09  E-value=0.0073  Score=48.07  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             CCceEEEE-EcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVF-EGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i-~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +++++|+| .|..|+||||++-.|+..+. .|.+|..++.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~   63 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDM   63 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEEC
Confidence            34666666 67788999999999999999 8999977653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.09  E-value=0.0034  Score=55.54  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +|-+++|.|+.||||||+++.|+..+.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            577899999999999999999987654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.09  E-value=0.0051  Score=50.93  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +..+.|.|++|+||||++..+++.+...
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            4579999999999999999999998753

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.08  E-value=0.0021  Score=56.28  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+.-++|.|+||+|||++++.++..++
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~  263 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETG  263 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence            355689999999999999999998764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.06  E-value=0.0039  Score=51.30  Aligned_cols=26  Identities=23%  Similarity=0.165  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +++.++.|.|+|||||||++..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35779999999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.06  E-value=0.0061  Score=46.81  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.+.+|.|+.||||||+.+.|.-.+..
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            467899999999999999999877764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.05  E-value=0.003  Score=47.29  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      +...|+|.|.+||||||+.+.|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999998774

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.04  E-value=0.0061  Score=50.25  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC--CCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN--NIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~--~~~~~~~~~   44 (227)
                      +++ ++.|.|+|||||||++-.++......  +-.+.++..
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~   66 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS   66 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            346 79999999999999988887766543  555666553

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.04  E-value=0.0037  Score=56.14  Aligned_cols=28  Identities=32%  Similarity=0.317  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|+.||||||+++.|+-.+.
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3577899999999999999999987554

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.04  E-value=0.0046  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ...|+|.|.+||||||+++.|..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            35699999999999999998864

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.03  E-value=0.011  Score=48.79  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++++.|..|+||||++..|+..+...|.+|..+.
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   49 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS   49 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence            57899999999999999999999999999987655

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.00  E-value=0.0044  Score=50.98  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+++|.|++|+||||+++.+.+.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~   56 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL   56 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence            47999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	1e-31
d1tmka_	214	c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (S	2e-23
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	4e-22
d1gsia_	208	c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tu	1e-16
d1p5zb_	241	c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sa	2e-15
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	2e-12
d2ocpa1	241	c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (	3e-12
d1osna_	331	c.37.1.1 (A:) Thymidine kinase {Varicella-zoster v	4e-10
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	7e-10
d1e2ka_	329	c.37.1.1 (A:) Thymidine kinase {Herpes simplex vir	4e-09
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-09
d1p6xa_	333	c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus	4e-08
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-07
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-07
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	8e-07
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	1e-06
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-06
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	2e-06
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-06
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	2e-05
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-05
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	6e-05
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	3e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.001

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-31
 Identities = 80/221 (36%), Positives = 116/221 (52%), Gaps = 20/221 (9%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RGA IV EG DR+GK+TQ++KLV+ L      ++ + FP+R+   G ++  YL+KK ++ 
Sbjct: 2   RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
           D + HLLFSANRWE                     ++ + +       DRY+FSGVAF+ 
Sbjct: 62  DHSVHLLFSANRWE-----------------QVPLIKEKLSQGVTLVVDRYAFSGVAFTG 104

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL 186
           AKE   + WC QP+ GLPKPD VL  +L      +R  FG ERYE   FQ +    + +L
Sbjct: 105 AKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQL 164

Query: 187 ---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE 224
                  W  +DA K I+ +   ++ +  D I  +   PL 
Sbjct: 165 MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG 205

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 214

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.5 bits (226), Expect = 2e-23
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 26/220 (11%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           RG  I+ EG DR+GKTTQ   L   L  N      + FP+R+   G +I+EYL       
Sbjct: 2   RGKLILIEGLDRTGKTTQCNILYKKLQPNCK---LLKFPERSTRIGGLINEYLTDD---- 54

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
                     +    +  +  L        +     +  +  +       YS    + + 
Sbjct: 55  ----------SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAK 104

Query: 127 AKEGMDISWCFQPEKGLPKPDA-VLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK 185
              GMD+ WC QP+ GL KPD  + L   + +    + GFGDERYE   FQ KV + + K
Sbjct: 105 GTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMK 164

Query: 186 L-------KDNIWIDIDA-DKDIDTLGLIVKDIVIDTIKK 217
           L        D     +D  +K I  +  ++  IV   +  
Sbjct: 165 LLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST 204

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 88.1 bits (217), Expect = 4e-22
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 20/220 (9%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           R  +IV EG + +GKTT    +V+ L +  I                 +   L       
Sbjct: 1   RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDI---- 56

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
                   S            L+     ++++ + ++           DR+  S  A+  
Sbjct: 57  -------KSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQG 109

Query: 127 AKEGMD---ISWCFQPEKGLPKPDAVLLFKLNEEALQRR----KGFGDERYEQTDFQRKV 179
              G+D   ++       G  +PD  L   +  E   +R            E  DF  + 
Sbjct: 110 GGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRT 169

Query: 180 AENYEKL--KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
              Y +L  +D     IDA + ++ +   ++  V   +K+
Sbjct: 170 RARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE 209

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.2 bits (178), Expect = 1e-16
 Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 18/207 (8%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL---- 65
            I  EG D +GK T  +KL             + FP    S    I              
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 66  -PDQAAHLLFSANRWEREPTLTKLIEQGITL---EIMHSSLENEKNLDQGCTNDRYSFSG 121
                A L                    + +    +  ++  +   L +       ++  
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121

Query: 122 VAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQ-TDFQRKVA 180
               A        W       L    A L  + +    QR  G   + YE+  + Q++  
Sbjct: 122 RIEFARLGLPKPDWQV-----LLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTG 176

Query: 181 ENYEKLKDNI----WIDIDADKDIDTL 203
             Y +L        W+ + AD D   L
Sbjct: 177 AVYAELAAQGWGGRWLVVGADVDPGRL 203

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 31/240 (12%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           R   I  EG   +GK+T    L        +  + V       ST    +E    +    
Sbjct: 1   RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60

Query: 67  DQAAHLLFSANRWEREP---TLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYSFSG 121
           +    +     RW            I   +           +  L    +  +DRY F+ 
Sbjct: 61  NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120

Query: 122 VAFSAAKEG--------MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQT 173
             + +                W         + D ++  +   E    R        EQ 
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180

Query: 174 ---DFQRKVAENYEKL-------------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
              ++  K+   +E               ++   + +D ++D       + + V + +  
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST 240

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 21/201 (10%)

Query: 7   RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELP 66
           +   ++ EG   SGKTT       Y N   + ++ V           +   Y   K    
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAM 67

Query: 67  DQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSA 126
              +++  +  +    PT  KL     ++              + C  +    +G     
Sbjct: 68  PFQSYVTLTMLQSHTAPTNKKLKIMERSIFS-----------ARYCFVENMRRNGSLEQG 116

Query: 127 AKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRR---KGFGDERYEQTDFQRKVAENY 183
               ++  + F  E    + D ++  + + E    R   +   +E      + +++ E +
Sbjct: 117 MYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELH 176

Query: 184 E-------KLKDNIWIDIDAD 197
           E       + +    + +DAD
Sbjct: 177 EDWLIHQRRPQSCKVLVLDAD 197

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 3e-12
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 31/236 (13%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF-------PDRTISTGHIIDEYLRKK 62
            +  EG    GK+T  K L     + ++ ++ V          ++   T   +   L   
Sbjct: 4   RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63

Query: 63  IELPDQ-----AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRY 117
              P +           S  + + EP   KL++    ++I   S+ +++ +      +  
Sbjct: 64  YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123

Query: 118 SFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQ---TD 174
           S S + +   ++    S+              +  + + +   +R        E+     
Sbjct: 124 SLSDIEWHIYQD--WHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELA 181

Query: 175 FQRKVAENYEKL-------------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
           +  ++   +E                +   + +D + D        +D+ +  +  
Sbjct: 182 YLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDL-MREVNT 236

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Length = 331

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 23/198 (11%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD---RTISTGHIIDEYLR------ 60
            I  +G    GKTT A++ + +          +  P    R ++    I           
Sbjct: 7   RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRL 66

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCT--NDRYS 118
                P+ A  L          P    +  +   L    +S   + N +      +DR+ 
Sbjct: 67  NGDVSPEDAQRLTAHFQSLFCSP-HAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHP 125

Query: 119 FSGVAFSAA--KEGMDISWC-----FQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDERY 170
            +             D+S              P    +++  ++    L R         
Sbjct: 126 IASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARP-G 184

Query: 171 EQTD--FQRKVAENYEKL 186
           E  +  F   +   Y  L
Sbjct: 185 ETVNLPFVMVLRNVYIML 202

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 54.3 bits (129), Expect = 7e-10
 Identities = 27/212 (12%), Positives = 62/212 (29%), Gaps = 25/212 (11%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD--RTISTGHIIDEYLRKKIELPD 67
             +  G    GK+T   K+ + L+   I ++ +N+ D     +      +   +  +L  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 68  QAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAA 127
           +    L                E  + ++           L    +              
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSY------------- 109

Query: 128 KEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE--RYEQTDFQRKVAENYEK 185
              +           L     ++L +   +  + R  + DE    E  +F R  A     
Sbjct: 110 ---VITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAV 166

Query: 186 L-KDNIWIDIDADKDIDTLGLIVKDIVIDTIK 216
           L    + + ++ + D     +   +I I ++K
Sbjct: 167 LAGSTVKVIVNVEGDPS---IAANEI-IRSMK 194

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Length = 329

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 25/202 (12%)

Query: 5   IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIID-EYLRKKI 63
           +P    +  +G    GKTT  + LV   ++++I    V  P+       +   E +    
Sbjct: 1   MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDI----VYVPEPMTYWRVLGASETIANIY 56

Query: 64  ELPDQAAHLLFSANRWEREPTLTKL-------IEQGITLEIMHSSLENEKNLDQGCTN-- 114
               +      SA       T  ++       +   +    +     +        T   
Sbjct: 57  TTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF 116

Query: 115 DRYSFSGVAFSA--AKEGMDISWC-----FQPEKGLPKPDAVLLFKLN-EEALQRRKGFG 166
           DR+  + +            ++                   ++L  L  +  + R     
Sbjct: 117 DRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQ 176

Query: 167 DERYEQTD--FQRKVAENYEKL 186
               E+ D      +   Y  L
Sbjct: 177 RP-GERLDLAMLAAIRRVYGLL 197

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 21/208 (10%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
            +V  G    G TT ++  +D L K  +  + V+F           +E L    +   + 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF--EVAKEENLVSDRDQMRKM 60

Query: 70  AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
                   +      + ++ ++       HS++   K    G  +               
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWV------------- 107

Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD- 188
            ++              D +L+ ++++E   R         +     R  A +Y  L   
Sbjct: 108 -LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGA 166

Query: 189 NIWIDIDADKDIDTLGLIVKDIVIDTIK 216
            + I  + +  +D     V+++  + ++
Sbjct: 167 TVKIVQNRNGLLD---QAVEEL-TNVLR 190

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 23/200 (11%), Positives = 48/200 (24%), Gaps = 17/200 (8%)

Query: 3   SQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST-GHIIDEYLRK 61
           S +     I  +G    GK+T  + +    +  +    F        +     +   +  
Sbjct: 1   SHMVTIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYD 60

Query: 62  KIELPDQAAHLLFSANRW---------EREPTLTKLIEQGITLEIMHSSLENEKN--LDQ 110
                 Q    +  A                 L            +    + +     D+
Sbjct: 61  TQNRKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDR 120

Query: 111 GCTNDRYSFSGVAFSAAK-EGMDISWCFQPEKGLPKPDAVLLFKLN-EEALQRRKGFGDE 168
                   F    +         +          P+   +++  LN EE ++R +     
Sbjct: 121 HPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRARI 180

Query: 169 RYEQTD--FQRKVAENYEKL 186
             EQ D      +   Y  L
Sbjct: 181 -GEQIDITLIATLRNVYFML 199

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 31/209 (14%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           +V  G   +GK TQA+K+V      +            ISTG +    +++   L  QA 
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPH------------ISTGDMFRAAMKEGTPLGLQAK 50

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
             +   +    E T+  + E+      +         L  G          +    A  G
Sbjct: 51  QYMDRGDLVPDEVTIGIVRER------LSKDDCQNGFLLDGFPRTVAQAEALETMLADIG 104

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
             + +    +         L    NE  +  R    +   +Q    + + + YE+     
Sbjct: 105 RKLDYVIHIDVRQDVLMERLTADDNEATVANRL---EVNMKQM---KPLVDFYEQK--GY 156

Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTIKK 217
             +I+ ++D++    +  DI  ++  + +
Sbjct: 157 LRNINGEQDMEK---VFADIRELLGGLAR 182

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 52/231 (22%)

Query: 1   MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLR 60
           M  ++ +   I   G   SGK TQ +K+V      +            +STG ++   + 
Sbjct: 1   MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTH------------LSTGDLLRAEVS 48

Query: 61  KKIELPDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFS 120
                    + ++             +L+     L+++  ++  + +  +G         
Sbjct: 49  SGSARGKMLSEIMEK----------GQLVPLETVLDMLRDAMVAKVDTSKG--------- 89

Query: 121 GVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERY----EQTDFQ 176
              F       ++    + E+ + +P  +L      E + +R     E      +  +  
Sbjct: 90  ---FLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETI 146

Query: 177 RKVAENYEKL---------KDNIWIDIDADKDIDTLGLIVKDI--VIDTIK 216
           +K  E Y K          K  I   ++A+  +D    +   +   +DT+K
Sbjct: 147 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDD---VFSQVCTHLDTLK 194

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 41/208 (19%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           ++  G   +GK TQA KL + L                ISTG +    + +  +L  +A 
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQ------------ISTGELFRRNIEEGTKLGVEAK 50

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
             L + +                  ++ +  +++  N           F    +  + E 
Sbjct: 51  RYLDAGDLVPS--------------DLTNELVDDRLNNPD----AANGFILDGYPRSVEQ 92

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEK----L 186
                     +G    DAVL F+++EE L  R        +  D      + Y      L
Sbjct: 93  AKALHEMLERRGT-DIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPL 151

Query: 187 KD---NIWIDIDADKDIDTLGLIVKDIV 211
            +   +    +DA   +D    +    +
Sbjct: 152 LEYYRDQLKTVDAVGTMDE---VFARAL 176

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 36/209 (17%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTIST--GHIIDEYLRKKIELPDQ 68
           +V  G   +GK TQA  L +  +  ++ +  +        T  G    + + +   + D 
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64

Query: 69  AAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK 128
               +               I  G    I  +   ++   +QG   ++     V      
Sbjct: 65  IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLV 124

Query: 129 EGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD 188
             +  +   +                     +R   +    + QT     + + Y+K   
Sbjct: 125 ARITNADALK---------------------KRLAAY----HAQT---EPIVDFYKKT-- 154

Query: 189 NIWIDIDADKDIDTLGLIVKDIVIDTIKK 217
            IW  +DA +   T   +  DI ++ + K
Sbjct: 155 GIWAGVDASQPPAT---VWADI-LNKLGK 179

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 27/207 (13%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           +   G   SGK TQ   +V      ++     +  D          +       +     
Sbjct: 9   VFVLGGPGSGKGTQCANIVRDFGWVHL-----SAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
            +         +  +     +   ++    + EN  + ++    D      V F      
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLF------ 116

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
            D       ++ L + ++      N E++++R    +    QT   + V ++Y K   + 
Sbjct: 117 FDCPEEVMTQRLLKRGESSGRSDDNIESIKKRF---NTFNVQT---KLVIDHYNKF--DK 168

Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTI 215
              I A++D++    +  D+  +  ++
Sbjct: 169 VKIIPANRDVNE---VYNDVENLFKSM 192

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 36/209 (17%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           ++  G   SGK TQ + +       +            IS G ++   +    E   +A 
Sbjct: 6   VMISGAPASGKGTQCELIKTKYQLAH------------ISAGDLLRAEIAAGSENGKRAK 53

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
             +             +++   +   +     +    L  G          +     +  
Sbjct: 54  EFMEKGQLVPD-----EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPD 108

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
             I      E  + +      F   EE ++ R    +  Y+       +   YE    NI
Sbjct: 109 TFILLDVPDELLVERVV----FDDTEEKVKLRL---ETYYQNI---ESLLSTYE----NI 154

Query: 191 WIDIDADKDIDTLGLIVKDI--VIDTIKK 217
            + +  D  +D    +   I  ++ +I +
Sbjct: 155 IVKVQGDATVDA---VFAKIDELLGSILE 180

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 29/200 (14%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           IV  G   +GK TQA ++V+     +            ISTG +    +++  EL  +A 
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPH------------ISTGDMFRAAIQEGTELGVKAK 50

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
             +      ++   +   +  GI  E +  S  +   L  G          +    A  G
Sbjct: 51  SFM------DQGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMG 104

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNI 190
             I      +    +  A L    N + +  R    +    QT     +   Y+     +
Sbjct: 105 RKIEHVLNIQVEKEELIARLTADDNPDTVTNRL---EVNMNQT---APLLAFYD--SKEV 156

Query: 191 WIDIDADKDIDTLGLIVKDI 210
            ++I+  KDI     + KD+
Sbjct: 157 LVNINGQKDIKD---VFKDL 173

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 49/221 (22%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           I   G   +GK TQ +KLV   +  +            +S G ++     +      +  
Sbjct: 11  IFVLGGPGAGKGTQCEKLVKDYSFVH------------LSAGDLLRAEQGRAGSQYGELI 58

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
                  +   +              I  + L N  + +      ++   G         
Sbjct: 59  KNCIKEGQIVPQE-------------ITLALLRNAISDNVKANKHKFLIDG-------FP 98

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQR----KVAENYEKL 186
             +      E+ + +   +L F   E+ +  R     +   ++D       K    +++ 
Sbjct: 99  RKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET 158

Query: 187 ---------KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS 218
                      +  + +  D+ ++    + KD+  D I+ S
Sbjct: 159 SMPVIEYFETKSKVVRVRCDRSVED---VYKDV-QDAIRDS 195

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 54/213 (25%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           I+  G   +GK TQA+ +++                  ISTG ++   ++   EL  QA 
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQ------------ISTGDMLRAAVKSGSELGKQAK 50

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
            ++ +           KL+   + + ++   +  E   +              F      
Sbjct: 51  DIMDAG----------KLVTDELVIALVKERIAQEDCRNG-------------FLLDGFP 87

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRR----------KGFGDERYEQTDFQRKVA 180
             I      ++     D VL F + +E +  R          +    E ++ T     + 
Sbjct: 88  RTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMT---APLI 144

Query: 181 ENYEK---LKDNIWIDIDADKDIDTLGLIVKDI 210
             Y K     +  +  +D  K +     +  D+
Sbjct: 145 GYYSKEAEAGNTKYAKVDGTKPVAE---VRADL 174

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 38/216 (17%), Positives = 62/216 (28%), Gaps = 44/216 (20%)

Query: 6   PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL 65
           P+G   V  G   +GK TQA KL       +            ++TG ++   +    EL
Sbjct: 1   PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCH------------LATGDMLRAMVASGSEL 48

Query: 66  PDQAAHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFS 125
             +                    ++ G  +         EKNL+     + +        
Sbjct: 49  GKKLKA----------------TMDAGKLVSDEMVLELIEKNLETPPCKNGFLLD---GF 89

Query: 126 AAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDF-QRKVAENYE 184
                         EK   K D+V+ F + +  L RR        +      +   E Y 
Sbjct: 90  PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYH 149

Query: 185 KL---------KDNIWIDIDADKDIDTLGLIVKDIV 211
                      K  I   IDA +  D    +   I+
Sbjct: 150 TQTTPLVEYYSKRGIHSAIDASQTPDV---VFASIL 182

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 33/209 (15%)

Query: 11  IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAA 70
           +   G   +GK TQ  ++V+     +            +S G ++ +  +       +  
Sbjct: 4   VFVLGGPGAGKGTQCARIVEKYGYTH------------LSAGELLRDERKNPDSQYGELI 51

Query: 71  HLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG 130
                  +         L+++ +   +  ++ +N+  +D    N                
Sbjct: 52  EKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDN--------LQGWN 103

Query: 131 MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKL---- 186
             +         L            E  L+R K  G     +   ++++    +      
Sbjct: 104 KTMDGKADVSFVLFFDCNN--EICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPII 161

Query: 187 ----KDNIWIDIDADKDIDTLGLIVKDIV 211
               +      IDA K +D    +  ++V
Sbjct: 162 DLYEEMGKVKKIDASKSVDE---VFDEVV 187

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 30/208 (14%), Positives = 50/208 (24%), Gaps = 36/208 (17%)

Query: 10  FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQA 69
            +   G + SGK+    KL    N                       EY R+        
Sbjct: 9   TVAILGGESSGKSVLVNKLAAVFN------------------TTSAWEYGRE-------- 42

Query: 70  AHLLFSANRWEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE 129
                       E  +       + L          ++  +    D    +  AF    E
Sbjct: 43  ---FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYE 99

Query: 130 GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN 189
           G    +     K  P    +LL    E      +  G ++  Q   Q  + +  +K K  
Sbjct: 100 GKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQL-LKKLLDKYKVP 158

Query: 190 IWIDIDADKDIDTLGLIVKDIVIDTIKK 217
                              + V   I+K
Sbjct: 159 YIEIESPSYL------DRYNQVKAVIEK 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	100.0
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.98
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.95
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.86
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.86
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.85
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.83
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.82
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.82
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.82
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.81
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.81
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.8
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.8
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.75
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.75
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.72
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.71
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.69
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.66
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.62
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.6
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.6
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.57
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.53
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.45
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.42
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.4
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.36
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.34
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.34
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.26
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.26
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.23
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.23
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.23
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.19
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.15
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.93
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.91
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.75
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.67
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.49
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.4
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.14
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.11
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.09
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.05
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.04
d1okkd2	207	GTPase domain of the signal recognition particle r	97.99
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.98
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.98
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.97
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.94
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.93
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.89
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.81
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.75
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.67
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.65
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.64
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.61
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.61
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.56
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.46
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.43
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.42
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.38
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.37
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.37
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.35
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.35
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.34
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.34
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.34
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.33
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.32
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.31
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.3
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.25
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.25
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.24
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.24
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.23
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.18
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.16
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.15
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.13
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.12
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.12
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.12
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.11
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.11
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.1
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.09
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.03
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.01
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.0
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.94
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.89
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.88
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.88
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.86
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.85
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.83
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.79
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.78
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.75
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.74
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.74
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.7
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.64
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.63
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.62
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.6
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.6
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.59
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.58
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.56
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.54
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.54
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.5
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.49
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.49
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.48
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.48
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.47
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.47
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.43
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.43
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.41
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.39
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.34
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.34
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.3
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.3
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.29
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.26
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.22
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.2
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.18
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.18
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.17
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.17
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.16
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.14
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.13
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.13
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.1
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.08
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.08
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.06
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.06
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.05
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	96.01
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.99
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.89
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.79
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.72
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.71
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.67
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.67
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.66
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.6
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.54
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.49
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.48
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.48
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.36
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.34
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.26
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.24
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.15
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.08
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.08
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.97
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.93
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.89
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.8
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.76
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.59
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.56
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.52
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.34
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.18
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.07
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.79
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.69
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.62
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	93.25
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.95
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.79
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.72
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.71
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.71
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.52
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.48
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.46
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.24
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.18
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.18
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.14
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	91.08
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.05
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	90.74
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	90.51
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.46
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	89.62
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.5
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.27
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	88.05
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.88
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	87.56
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	87.47
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	87.44
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	86.64
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	85.79
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	85.3
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	82.96
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	82.09
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	81.61
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.55

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-37  Score=239.98  Aligned_cols=202  Identities=42%  Similarity=0.786  Sum_probs=180.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      .+|++|+|+|++||||||+++.|++.|...|+++..+++|..+.+.+..++.++.....+......++|.+++......+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i   80 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   80 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhH
Confidence            36899999999999999999999999999999999999998788889999999888777888888999999998888899


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      .+++.+|.+|||                 |||++|+++|+....+.+..|+..+....+.||++|||++|++++.+|...
T Consensus        81 ~~~l~~g~~VI~-----------------DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~  143 (209)
T d1nn5a_          81 KEKLSQGVTLVV-----------------DRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAF  143 (209)
T ss_dssp             HHHHHTTCEEEE-----------------ESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC---
T ss_pred             HHHhhcccceee-----------------cchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcc
Confidence            999999999999                 999999999998877788888888888899999999999999999999987


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCCc
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPLE  224 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~~  224 (227)
                      +++++++.++++++.+.|.++...   ++++||+++++++|.++|..++.+.+.....+|+-
T Consensus       144 ~~~~~E~~~~~~r~~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~~~~~~  205 (209)
T d1nn5a_         144 GHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIATATEKPLG  205 (209)
T ss_dssp             --CTTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGGGSCCC
T ss_pred             cccccccHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHhcccCchh
Confidence            778888899999999999999764   68999999999999999999999999988877764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-31  Score=209.21  Aligned_cols=193  Identities=23%  Similarity=0.293  Sum_probs=159.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCchHHHHHHHhhc-----CCCCHHHHHHHHHhhhhh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTGHIIDEYLRKK-----IELPDQAAHLLFSANRWE   80 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   80 (227)
                      +|++|+|+|++||||||+++.|++.|...|+++.. .++|. +.+.++.+++.+...     ..+......++|.+.+..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG-GTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   79 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC-SSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC-CccchhhhHHHHhccccccccccchHHHHHHHHHHHHH
Confidence            58899999999999999999999999999987654 67775 677788888877653     245666777777777766


Q ss_pred             hh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhccc---CCCCCCCEEEEeecCH
Q psy16874         81 RE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPE---KGLPKPDAVLLFKLNE  156 (227)
Q Consensus        81 ~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pd~vi~L~~~~  156 (227)
                      .. ..+.+++.+|.+|++                 |||++|+++++....+.+..|+..+.   ...+.||++|||++||
T Consensus        80 ~~~~~i~~~l~~~~~vi~-----------------DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~  142 (210)
T d4tmka_          80 LVETVIKPALANGTWVIG-----------------DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTP  142 (210)
T ss_dssp             HHHHTHHHHHHTTCEEEE-----------------ECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred             HHHHHHHHHHHcCCcccc-----------------cchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchH
Confidence            54 468899999999999                 99999999998776677767665443   3467899999999999


Q ss_pred             HHHHHhcCCCC--CCc--ccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHHHHhhh
Q psy16874        157 EALQRRKGFGD--ERY--EQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVIDTIKK  217 (227)
Q Consensus       157 e~~~~R~~~r~--~~~--~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~~~l~~  217 (227)
                      +++.+|+.+|+  +.+  +..++++++++.|.++...  .+++||+++++++|.++|.+.|.+.+++
T Consensus       143 e~~~~Ri~~R~~~~~~~~~~~~~~~~v~~~y~~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         143 EVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             HHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            99999996553  333  3589999999999988765  7999999999999999999999998874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=9.1e-31  Score=205.44  Aligned_cols=194  Identities=41%  Similarity=0.675  Sum_probs=154.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhc-CCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKK-IELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +|++|+|+|++||||||+++.|++.|...   +..+++|..+.+.|..+++++.+. ..+.+....++|+++|++....+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~---~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i   78 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI   78 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS---EEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC---CEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998763   345677766778888888887653 35678888889999999988888


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC--CCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE--GMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+.+..|.+|||                 |||++|+++|+....  ..+..|+..+....+.||++|||++||++..+|.
T Consensus        79 ~~~l~~g~~VI~-----------------DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~  141 (214)
T d1tmka_          79 KKDLLEGKNIVM-----------------DRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEK  141 (214)
T ss_dssp             HHHHHTTCEEEE-----------------ESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC--------
T ss_pred             HHHHhcCCeeEe-----------------cCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHh
Confidence            999999999999                 999999999987652  2456777777777889999999999999988887


Q ss_pred             CCCC-CCcccHHHHHHHHHHHHHHhh-------CCeEEEcCC-CCHHHHHHHHHHHHHHHhhhcCC
Q psy16874        164 GFGD-ERYEQTDFQRKVAENYEKLKD-------NIWIDIDAD-KDIDTLGLIVKDIVIDTIKKSQF  220 (227)
Q Consensus       164 ~~r~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~Id~~-~s~~~v~~~I~~~i~~~l~~~~~  220 (227)
                      ..++ +.+++.++++++++.|..+..       ..+++||++ .++++|.++|.+.|.+.|..+.+
T Consensus       142 ~~~~~~~~e~~~~~~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~~~  207 (214)
T d1tmka_         142 SGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHID  207 (214)
T ss_dssp             --CCSSTTCCHHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence            6544 457788999999999987753       268999975 79999999999999999977544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=3.1e-27  Score=183.79  Aligned_cols=182  Identities=26%  Similarity=0.341  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCC----CHHHHHHHHHhhhhhhhhH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIEL----PDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   84 (227)
                      |+|+|+|++||||||+++.|++.|...|+++..+++|..+.+.+..+......+...    .......++.+.+......
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999977777777666655543321    2234444555556666666


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccC-----CCChhhhh---cccCCCCCCCEEEEeecCH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKE-----GMDISWCF---QPEKGLPKPDAVLLFKLNE  156 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~pd~vi~L~~~~  156 (227)
                      +.+....+.+|++                 |||+++..++.....     +....|+.   .+....+.||++|||++|+
T Consensus        81 ~~~~~~~~~~vi~-----------------DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~  143 (208)
T d1gsia_          81 IQGLCRGYDVVIL-----------------DRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSA  143 (208)
T ss_dssp             HHHHHHHSSEEEE-----------------ESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCH
T ss_pred             HHHHhhhcccccc-----------------cchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccH
Confidence            7777788999999                 999999988775531     11123332   2334568999999999999


Q ss_pred             HHHHHhcCCCC--------CCcc-cHHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHH
Q psy16874        157 EALQRRKGFGD--------ERYE-QTDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIV  207 (227)
Q Consensus       157 e~~~~R~~~r~--------~~~~-~~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I  207 (227)
                      +++.+|+.+|+        +.++ ..++++++++.|.++...    +|++||+++++++|.++|
T Consensus       144 e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         144 ELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence            99999996541        3344 378999999999998643    599999999999999876

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.87  E-value=4.8e-23  Score=158.29  Aligned_cols=175  Identities=16%  Similarity=0.192  Sum_probs=108.5

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      |..  ++|.+|+|.|||||||||+|+.|+++++..+++++. +++ .....+.+..++.+...+...+......      
T Consensus         1 ~~~--~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   72 (194)
T d1qf9a_           1 MEK--SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVK------   72 (194)
T ss_dssp             CCC--CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHH------
T ss_pred             CCC--CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHH------
Confidence            545  789999999999999999999999999877766533 322 1123345666666666666555544331      


Q ss_pred             hhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874         79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        79 ~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                           .+......               ...+|+|+|     ++|....+.    ..+.........|+++|+|++|+++
T Consensus        73 -----~~~~~~~~---------------~~~~~~i~d-----g~p~~~~~~----~~l~~~~~~~~~~~~vi~l~~~~~~  123 (194)
T d1qf9a_          73 -----LLKNAIDA---------------NQGKNFLVD-----GFPRNEENN----NSWEENMKDFVDTKFVLFFDCPEEV  123 (194)
T ss_dssp             -----HHHHHHHT---------------STTCCEEEE-----TCCCSHHHH----HHHHHHHTTTCEEEEEEEEECCHHH
T ss_pred             -----HHHHHhhh---------------hhcCCeEEE-----ecchhhhhH----HHHHhhhhhcccccEEEEeecchHH
Confidence                 11111111               123445557     555443331    2233333455689999999999999


Q ss_pred             HHHhcCCCCCC---c-ccHHH-HHHHHHHHHHH-------hh--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        159 LQRRKGFGDER---Y-EQTDF-QRKVAENYEKL-------KD--NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       159 ~~~R~~~r~~~---~-~~~~~-~~~~~~~~~~~-------~~--~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      +.+|+..++..   . .+.+. .+++. .|...       .+  ..+++||+++++++|+++|.++|+.
T Consensus       124 ~~~R~~~~~~~~~~~~d~~e~~~~Rl~-~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         124 MTQRLLKRGESSGRSDDNIESIKKRFN-TFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHHHHTTSCCTTCSHHHHHHHHH-HHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccccccHHHHHHHHH-HHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99998543211   1 12222 22322 22221       11  1688999999999999999988864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.4e-23  Score=156.13  Aligned_cols=166  Identities=17%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|+|+|||||||+|+.|+++++..++++.. +++. ..+++.+..++.++.++...++.....+.           .
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~-----------~   69 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALV-----------K   69 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHH-----------H
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHH-----------H
Confidence            468999999999999999999999888777644 3321 12445566677788888777776655222           1


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      ..+...              ...+|+|+|     ++|++..+       ...+......|+++|+|++|++++.+|+..+
T Consensus        70 ~~~~~~--------------~~~~g~i~~-----g~pr~~~~-------~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~  123 (179)
T d1e4va1          70 ERIAQE--------------DCRNGFLLD-----GFPRTIPQ-------ADAMKEAGINVDYVLEFDVPDELIVDRIVKD  123 (179)
T ss_dssp             HHHTSG--------------GGGGCEEEE-----SCCCSHHH-------HHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred             Hhhccc--------------ccccceeec-----ccccchHH-------hhhhhhccCCceEEEEeccchhhhhhhhccc
Confidence            111110              123345557     56654433       1222334558999999999999999999764


Q ss_pred             CCC--ccc--HHHH---HHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        167 DER--YEQ--TDFQ---RKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       167 ~~~--~~~--~~~~---~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      ...  +.+  ..|.   ..+.+.|++....   .++.||+++++++|+++|.++|
T Consensus       124 ~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         124 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence            321  111  1222   2345566655432   5899999999999999998876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.7e-24  Score=167.33  Aligned_cols=198  Identities=14%  Similarity=0.097  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchH--------------HHHHHHhhcCCCCHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGH--------------IIDEYLRKKIELPDQAAHL   72 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~   72 (227)
                      ++++|+|+|++||||||+++.|+++|...++.+..+..|......+.              .+..++.+... .......
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~d~~~-~~~~~q~   79 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPER-WSFTFQT   79 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCCHHHHHHHCHHH-HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeeecCCCchHHHHHHHHhhccccCCchHHHHHhhhhh-cccchhh
Confidence            46899999999999999999999988654433222221211111111              12222221100 0011111


Q ss_pred             HHHhhhhhhhhHHH-HHHHc--CCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCCh---------hhhhccc
Q psy16874         73 LFSANRWEREPTLT-KLIEQ--GITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDI---------SWCFQPE  140 (227)
Q Consensus        73 ~~~~~~~~~~~~i~-~~~~~--~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~---------~~~~~~~  140 (227)
                      ++...+........ .....  ...+..           +..++.|||+++.+++.... ....         .|+....
T Consensus        80 ~~~~~r~~~~~~~~~~~~~~~~~~~l~~-----------~~~v~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  147 (241)
T d1p5zb_          80 YACLSRIRAQLASLNGKLKDAEKPVLFF-----------ERSVYSDRYIFASNLYESEC-MNETEWTIYQDWHDWMNNQF  147 (241)
T ss_dssp             HHHHHHHHHHHHHHTSGGGGSSSCEEEE-----------ESCHHHHHHTHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhhc-----------CCeEEEeccccHHHHHHHhc-ccchhHHHHHHHHHHHHhhc
Confidence            22222222111110 01111  111111           22233377777766666443 1110         1121112


Q ss_pred             CCCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhhC-------------CeEEEcCCCCHHHHH
Q psy16874        141 KGLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKDN-------------IWIDIDADKDIDTLG  204 (227)
Q Consensus       141 ~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~Id~~~s~~~v~  204 (227)
                      ...+.||++|||++||+++.+|+.+|++..+   +.++++++.+.|+.+...             ++++||++++++++.
T Consensus       148 ~~~~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~  227 (241)
T d1p5zb_         148 GQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKY  227 (241)
T ss_dssp             HHHHCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHH
T ss_pred             ccCCCCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHH
Confidence            2346899999999999999999876554443   488999999999987431             789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy16874        205 LIVKDIVIDTIKK  217 (227)
Q Consensus       205 ~~I~~~i~~~l~~  217 (227)
                      ++|.+.|..++.+
T Consensus       228 ~~i~~~i~~~l~~  240 (241)
T d1p5zb_         228 ESLVEKVKEFLST  240 (241)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.85  E-value=1.9e-21  Score=148.75  Aligned_cols=173  Identities=19%  Similarity=0.275  Sum_probs=105.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      +||.|+|.|||||||||+|+.|++++++.++++.. +++. ....+....+..++..+...+..........      ..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~   75 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKE------RL   75 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHH------HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhh------Hh
Confidence            58889999999999999999999999998887644 2221 0112223344555555555555433211110      11


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      .......                  +|+|+|     ++++...+       ...+......|+.+|+|++|++++.+|+.
T Consensus        76 ~~~~~~~------------------~~~vid-----~~~~~~~q-------~~~l~~~~~~p~~~i~L~~~~e~l~~R~~  125 (189)
T d1zaka1          76 RQPDAQE------------------NGWLLD-----GYPRSYSQ-------AMALETLEIRPDTFILLDVPDELLVERVV  125 (189)
T ss_dssp             HSHHHHH------------------TCEEEE-----SCCCSHHH-------HHHHHTTTCCCSEEEEEECCHHHHHHHHT
T ss_pred             hhccccc------------------CcEEee-----ccchhhHH-------Hhhhhhcccccchheeechhhhhhhhhcc
Confidence            1111111                  223336     44443322       22334445589999999999999999996


Q ss_pred             CCCCCcccHHHHHHHHHHHH---HH---hhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhc
Q psy16874        165 FGDERYEQTDFQRKVAENYE---KL---KDNIWIDIDADKDIDTLGLIVKDIVIDTIKKS  218 (227)
Q Consensus       165 ~r~~~~~~~~~~~~~~~~~~---~~---~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~  218 (227)
                      .+... +  ...+++...++   ..   .+..++.||+++++++|+++|.+.|...+.+.
T Consensus       126 ~~~~~-e--~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~  182 (189)
T d1zaka1         126 FDDTE-E--KVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKK  182 (189)
T ss_dssp             TTCCT-T--HHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchH-H--HHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhh
Confidence            54321 1  11122222111   11   12368999999999999999999999888764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=9.2e-22  Score=149.48  Aligned_cols=170  Identities=19%  Similarity=0.132  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|.|+|||||||+|+.|++++++.++++.. ++. .....+.+..+..++.++..++.....           ..+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~l~   69 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN-----------ELVD   69 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHH-----------HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHH-----------HHHH
Confidence            469999999999999999999999888777644 222 222445567777777888777776544           2333


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhh-hcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWC-FQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+...              ...+|+|+|.     +|....+.    ..+ .........|+++++|+++++++.+|+..
T Consensus        70 ~~~~~~--------------~~~~~~i~d~-----~p~~~~~~----~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~  126 (181)
T d2cdna1          70 DRLNNP--------------DAANGFILDG-----YPRSVEQA----KALHEMLERRGTDIDAVLEFRVSEEVLLERLKG  126 (181)
T ss_dssp             HHTTSG--------------GGTTCEEEES-----CCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHH
T ss_pred             HHhhCc--------------cccccEEecc-----cccchhHH----HHHHHHHHhcCCCccEEEeccCCHHHHHhhhcc
Confidence            332211              2234556674     44333321    111 11223455899999999999999999975


Q ss_pred             CCCCcccHHHHHHHHHHHHHHh-------hCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEKLK-------DNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      |+......+.++...+.|+...       ...++.||+++++++|+++|.+.|.
T Consensus       127 r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         127 RGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             HCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCeEEEECCCCHHHHHHHHHHHhC
Confidence            4433233333333333443321       2378999999999999999988764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.83  E-value=2.6e-21  Score=148.05  Aligned_cols=175  Identities=19%  Similarity=0.159  Sum_probs=111.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC-CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP-DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      |+++-|+|.|||||||||+|+.|+++++..++++.. +++. ..+...+..+..+...+..++.+...           .
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~-----------~   69 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL-----------E   69 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceee-----------e
Confidence            457778889999999999999999999887777643 4431 12445567777777778777776554           2


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhh-cccCCCCCCCEEEEeecCHHHHHHh
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCF-QPEKGLPKPDAVLLFKLNEEALQRR  162 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pd~vi~L~~~~e~~~~R  162 (227)
                      .+...+..              ....+|+|+|     ++|+...++    ..+. .+......+.++++|+++.+++.+|
T Consensus        70 ~~~~~l~~--------------~~~~~g~ii~-----g~pr~~~qa----~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r  126 (190)
T d1ak2a1          70 LIEKNLET--------------PPCKNGFLLD-----GFPRTVRQA----EMLDDLMEKRKEKLDSVIEFSIPDSLLIRR  126 (190)
T ss_dssp             HHHHHHTS--------------GGGTTCEEEE-----SCCCSHHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             eehhhhcc--------------ccccCceeec-----ccccchhHH----HHHHHHhhhccccccccccccchHHHHHhh
Confidence            23223221              1234556667     666665542    2221 1223345788999999999999999


Q ss_pred             cCCCCCCcc-cHHHHHHHHHHHHHH--------hh-CCeEEEcCCCCHHHHHHHHHHHHHHH
Q psy16874        163 KGFGDERYE-QTDFQRKVAENYEKL--------KD-NIWIDIDADKDIDTLGLIVKDIVIDT  214 (227)
Q Consensus       163 ~~~r~~~~~-~~~~~~~~~~~~~~~--------~~-~~~~~Id~~~s~~~v~~~I~~~i~~~  214 (227)
                      +..|..... +.+..++-.+.|...        .. +.+++||+++++++|+++|.+.|.+.
T Consensus       127 ~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         127 ITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  188 (190)
T ss_dssp             HHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            976532211 122222112222221        11 25789999999999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2e-20  Score=143.72  Aligned_cols=176  Identities=14%  Similarity=0.181  Sum_probs=110.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC--CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhh
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF--PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWER   81 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (227)
                      +++.++|+|.|||||||||+|+.|++++++.+++++. ++.  ...+...+..++.+...+...++.........     
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----   79 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN-----   79 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH-----
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHH-----
Confidence            4667889999999999999999999999888877644 332  12245677888888888776666544422111     


Q ss_pred             hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHH
Q psy16874         82 EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQR  161 (227)
Q Consensus        82 ~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~  161 (227)
                       ...........                 ++|+|     +++....++       ..+......|+.+++|++|++++.+
T Consensus        80 -~~~~~~~~~~~-----------------~~vl~-----g~p~~~~q~-------~~~~~~~~~~~~~i~l~~~~e~~~~  129 (196)
T d1ukza_          80 -AISDNVKANKH-----------------KFLID-----GFPRKMDQA-------ISFERDIVESKFILFFDCPEDIMLE  129 (196)
T ss_dssp             -HHHHHHHTTCC-----------------EEEEE-----TCCCSHHHH-------HHHHHHTCCCSEEEEEECCHHHHHH
T ss_pred             -HHHhhhccCCC-----------------ceeee-----ccchhHHHH-------HHHHHhccccceeeccCCCHHHHHH
Confidence             11111111222                 22336     555544331       1122334578999999999999999


Q ss_pred             hcCCCC----CCcccHHHHHHHHHHHHHH-------hh--CCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        162 RKGFGD----ERYEQTDFQRKVAENYEKL-------KD--NIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       162 R~~~r~----~~~~~~~~~~~~~~~~~~~-------~~--~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      |...++    ..-...+.++...+.|...       .+  ..++.||+++++++|+++|.+.|.+.|
T Consensus       130 R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         130 RLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhhC
Confidence            975321    1111122222222233221       11  268899999999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.3e-21  Score=151.38  Aligned_cols=191  Identities=14%  Similarity=0.076  Sum_probs=111.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC------CCCCchH-----HHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD------RTISTGH-----IIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      |++|+|+|++||||||+++.|+++|...++....+..+.      .....++     .+..++.+... ........+.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~~epv~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~-~~~~~q~~~~~   80 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYREPAR-WSYTFQTFSFL   80 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------CCCHHHHHHHSHHH-HHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCcccccCccceeecCCCCchHHHHHHHHHhhhhhccchh-hhhHHHHHHHH
Confidence            789999999999999999999999876554211111110      0111111     22333332211 11223334444


Q ss_pred             hhhhhh-hHH-HHHH-HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhcc---CCCC--h------hhhh---cc
Q psy16874         77 NRWERE-PTL-TKLI-EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAK---EGMD--I------SWCF---QP  139 (227)
Q Consensus        77 ~~~~~~-~~i-~~~~-~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~---~~~~--~------~~~~---~~  139 (227)
                      ++.... +.+ .... ..+..+++                 ||++++...+....   .+..  .      .|+.   ..
T Consensus        81 ~r~~~~~~~~~~~~~~~~~~~vi~-----------------dr~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  143 (241)
T d2ocpa1          81 SRLKVQLEPFPEKLLQARKPVQIF-----------------ERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWE  143 (241)
T ss_dssp             HHHHHHHSCCCHHHHSCSSCEEEE-----------------ESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchhhhh-----------------cccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhh
Confidence            444332 222 2222 23467777                 99998876543221   1111  0      1111   11


Q ss_pred             cCCCCCCCEEEEeecCHHHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhhC-------------CeEEEcCCCCHHHH
Q psy16874        140 EKGLPKPDAVLLFKLNEEALQRRKGFGDERYE---QTDFQRKVAENYEKLKDN-------------IWIDIDADKDIDTL  203 (227)
Q Consensus       140 ~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~Id~~~s~~~v  203 (227)
                      ....+.||++|||++|++++.+|+.+|++..+   +.++++++++.|+.+...             ++++||++++.+++
T Consensus       144 ~~~~~~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~d~~~~  223 (241)
T d2ocpa1         144 FASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEE  223 (241)
T ss_dssp             SHHHHCCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTC
T ss_pred             hccccccceEEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCCchhhh
Confidence            12335899999999999999999977665544   489999999999987532             68999999775444


Q ss_pred             ---HHHHHHHHHHHhh
Q psy16874        204 ---GLIVKDIVIDTIK  216 (227)
Q Consensus       204 ---~~~I~~~i~~~l~  216 (227)
                         ..+|.+.|..+++
T Consensus       224 ~~~~~~i~~~I~~~i~  239 (241)
T d2ocpa1         224 VTKQEDLMREVNTFVK  239 (241)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence               3445555555544

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-21  Score=147.94  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=108.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      .|.|+|+|+|||||||+|+.|++.++..++++.. +++ ....++.+..++.++..+...+......           .+
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~-----------~~   70 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVN-----------MI   70 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHH-----------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHH-----------HH
Confidence            3558899999999999999999999887777643 332 1224566778888888887777766542           22


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      ...+...             ....+|+|+|     ++|....++    ..+.. +.....+|+++|+|+++++++.+|+.
T Consensus        71 ~~~l~~~-------------~~~~~g~i~d-----g~p~~~~q~----~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~  128 (180)
T d1akya1          71 KDELTNN-------------PACKNGFILD-----GFPRTIPQA----EKLDQMLKEQGTPLEKAIELKVDDELLVARIT  128 (180)
T ss_dssp             HHHHHHC-------------GGGGSCEEEE-----SCCCSHHHH----HHHHHHHHHHTCCCCEEEEEECCHHHHHHHHH
T ss_pred             HHHHhcC-------------ccccCCEecc-----CccchhhhH----HHHHhhHHHcCCCceeeeecccccchhhhccc
Confidence            2222221             1234456668     445443331    11111 22233479999999999999999986


Q ss_pred             CCCCCcc-c-HHHHH---HHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        165 FGDERYE-Q-TDFQR---KVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       165 ~r~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .+. ... . ..|.+   .+.+.|++.  +.++.||+++++++|+++|.+.|.
T Consensus       129 ~~~-~~~~r~~~y~~~~~~v~~~y~~~--~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         129 NAD-ALKKRLAAYHAQTEPIVDFYKKT--GIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             SHH-HHHHHHHHHHHHTTHHHHHHHHH--TCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             ccc-cccchHHHHHHHHHHHHHHHHhc--CCEEEEECCCCHHHHHHHHHHHHc
Confidence            431 111 1 12222   244455443  258999999999999999998774

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.81  E-value=5.1e-21  Score=146.57  Aligned_cols=172  Identities=13%  Similarity=0.123  Sum_probs=112.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (227)
                      .+.+.|+|.|+|||||||+|+.|++++++.+++++. +++ .......+..++..+..+..+++.....           
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------   72 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTR-----------   72 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHH-----------
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhh-----------
Confidence            567889999999999999999999999887777644 332 1123445666677777777777765542           


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+...+..               ....|+|+|     +||++..+.    ..+   . ....|+++|+|++|.+++.+|+
T Consensus        73 l~~~~~~~---------------~~~~~~ild-----GfPr~~~q~----~~l---~-~~~~~~~vi~L~v~~~~l~~R~  124 (189)
T d2ak3a1          73 LVLHELKN---------------LTQYNWLLD-----GFPRTLPQA----EAL---D-RAYQIDTVINLNVPFEVIKQRL  124 (189)
T ss_dssp             HHHHHHHH---------------HTTSCEEEE-----SCCCSHHHH----HHH---H-TTCCCCEEEEEECCHHHHHHHH
T ss_pred             hhhhhhhh---------------hhhcCcccc-----cccchhhHH----HHh---h-hcCcceEEEEEeccchhhhhhc
Confidence            22222211               122345557     777665541    222   2 2347899999999999999999


Q ss_pred             CCCCCCccc--H---HHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874        164 GFGDERYEQ--T---DFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQ  219 (227)
Q Consensus       164 ~~r~~~~~~--~---~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~  219 (227)
                      ..+.+...+  .   +....+.+.|++.  +.++.||++ ++++|+++|.+.|...+.++.
T Consensus       125 ~~r~e~~~kr~~~y~~~~~~v~~~Y~~~--~~l~~idg~-~~~eV~~~I~~~i~~~l~~~~  182 (189)
T d2ak3a1         125 TDRPETVVKRLKAYEAQTEPVLEYYRKK--GVLETFSGT-ETNKIWPHVYAFLQTKLPQRS  182 (189)
T ss_dssp             TGSHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEECS-SHHHHHHHHHHHHHTTSCBCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEECCC-ChHHHHHHHHHHHHHHhhccc
Confidence            765332221  1   1222333445443  257889988 579999999999998776543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.7e-20  Score=141.29  Aligned_cols=176  Identities=17%  Similarity=0.175  Sum_probs=107.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCC--CCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFP--DRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      |++|+|.|||||||||+|+.|++++++.++++.. +++.  ....+.+..+..++.++..+++........       ..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-------~~   73 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLK-------RE   73 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHH-------HH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHH-------Hh
Confidence            7899999999999999999999999887776644 3321  123455666777777777777765542222       11


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcC
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKG  164 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~  164 (227)
                      +.......              ...+++++|     ++|++..+.    ..+..+......++++|+++++.+++.+|..
T Consensus        74 ~~~~~~~~--------------~~~~~~~~~-----g~pr~~~~~----~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~  130 (194)
T d1teva_          74 MDQTMAAN--------------AQKNKFLID-----GFPRNQDNL----QGWNKTMDGKADVSFVLFFDCNNEICIERCL  130 (194)
T ss_dssp             HHHHHHHC--------------TTCCEEEEE-----SCCCSHHHH----HHHHHHHTTTCEEEEEEEEECCHHHHHHHHH
T ss_pred             hcccchhh--------------hcccceeec-----cchhhHHHH----HHHhhhhhccccccEEEeecCcchhheeecc
Confidence            11111100              012223335     666554431    2222222344467899999999999999886


Q ss_pred             CCC---CCc-ccHHHHHHHHHHHHHHh-------h--CCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        165 FGD---ERY-EQTDFQRKVAENYEKLK-------D--NIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       165 ~r~---~~~-~~~~~~~~~~~~~~~~~-------~--~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .|.   .+. ...+.+.+..+.|.+..       +  ..++.||+++++++|+++|.++|++
T Consensus       131 ~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         131 ERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            431   111 12333333333333321       1  1578999999999999999998874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.80  E-value=7.4e-21  Score=146.05  Aligned_cols=175  Identities=17%  Similarity=0.229  Sum_probs=112.1

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      |...++++++|+|.|||||||||+|+.|++++++.++++.. ++. .......+..+..++..+..+++....       
T Consensus         1 ~~~~~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (194)
T d3adka_           1 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL-------   73 (194)
T ss_dssp             CHHHHHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHH-------
T ss_pred             CcccccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheee-------
Confidence            44445678999999999999999999999999887776644 332 111344566667777777777776554       


Q ss_pred             hhhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874         79 WEREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        79 ~~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                          ..+...+...             .+..+|+|+|     +||++..++    ..   +......|..++++.+++++
T Consensus        74 ----~~~~~~l~~~-------------~~~~~g~ild-----g~pr~~~qa----~~---~~~~~~~~~~~~~~~~~~~~  124 (194)
T d3adka_          74 ----DMLRDAMVAK-------------VDTSKGFLID-----GYPREVKQG----EE---FERKIGQPTLLLYVDAGPET  124 (194)
T ss_dssp             ----HHHHHHHHTT-------------TTTCSCEEEE-----SCCSSHHHH----HH---HHHHTCCCSEEEEEECCHHH
T ss_pred             ----eehhhhhhhc-------------ccccccceee-----eccchhHHH----HH---HHHHhCCccchhccccchhh
Confidence                3333333322             1235566668     666665542    12   22233468899999999999


Q ss_pred             HHHhcCC------CCCCcccHHHHHHHHHHHHH-------HhhC--CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        159 LQRRKGF------GDERYEQTDFQRKVAENYEK-------LKDN--IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       159 ~~~R~~~------r~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ..+|...      |.+..+. ...+++. .|.+       ..+.  .++.||+++++++|+++|.+.|+.
T Consensus       125 ~~~r~~~~~~~~~r~~d~~e-~i~~R~~-~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         125 MTKRLLKRGETSGRVDDNEE-TIKKRLE-TYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHHHHHHHHHHTCCCCCST-THHHHHH-HHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             hHhHhhhhcccccCCcchHH-HHHHHHH-HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            9998642      2222211 1112222 1211       1122  688999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=4e-20  Score=140.03  Aligned_cols=171  Identities=16%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|.|+|||||||+|+.|++++++.++++.. ++. .....+.+..++.++..+..+++.....           .+.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~   69 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIG-----------IVR   69 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHH-----------HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHH-----------HHH
Confidence            459999999999999999999999887777644 222 1224455677777777777777755442           222


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhh-cccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCF-QPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......              ...+|+++|     +++....+.    ..+. ........++++++|+++.+.+.+|+..
T Consensus        70 ~~~~~~--------------~~~~~~v~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~  126 (182)
T d1zina1          70 ERLSKD--------------DCQNGFLLD-----GFPRTVAQA----EALETMLADIGRKLDYVIHIDVRQDVLMERLTA  126 (182)
T ss_dssp             HHHTSG--------------GGTTCEEEE-----SCCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT
T ss_pred             HHhhch--------------hhhcCcccc-----cccchhHHH----HHHHHhhhccCCceeeeeccccccchhhhcccc
Confidence            221111              123344446     333322220    1111 1123345789999999999999999975


Q ss_pred             CCCC--ccc--HHHHH---HHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        166 GDER--YEQ--TDFQR---KVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       166 r~~~--~~~--~~~~~---~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      +.+.  +.+  ..|.+   .+.+.|++.  ..+++||+++++++|+++|.++|..+.
T Consensus       127 ~~~~e~~~~Rl~~y~~~~~~l~~~y~~~--~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         127 DDNEATVANRLEVNMKQMKPLVDFYEQK--GYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             TCSHHHHHHHHHHHHHHHTHHHHHHHHH--TCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence            4221  111  11111   222334332  268899999999999999999998765

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.8e-19  Score=131.97  Aligned_cols=165  Identities=12%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      +.+++|+|+|+|||||||+++.|+++++..+++++.+.        ..........+..............    ....+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   71 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH--------PRRNIEKMASGEPLNDDDRKPWLQA----LNDAA   71 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC--------CHHHHHHHHTTCCCCHHHHHHHHHH----HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhh--------HHHHhhhhccCcceehhhhHHHHHH----HHHHH
Confidence            56889999999999999999999999976544333222        1222222222222222221111110    01233


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ......+..++.                 +.....             .....+......+..+|||++|++++.+|+..
T Consensus        72 ~~~~~~~~~~~~-----------------~~~~~~-------------~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~  121 (171)
T d1knqa_          72 FAMQRTNKVSLI-----------------VCSALK-------------KHYRDLLREGNPNLSFIYLKGDFDVIESRLKA  121 (171)
T ss_dssp             HHHHHHCSEEEE-----------------ECCCCS-------------HHHHHHHHTTCTTEEEEEEECCHHHHHHHHHT
T ss_pred             HHHHhccCceEe-----------------eccchH-------------HHHHHHHHHhCCCceEEeecCCHHHHHHHHHh
Confidence            334445555554                 211100             11111122334567899999999999999988


Q ss_pred             CCCCcccHHHHHHHHHHHHHHhhC--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GDERYEQTDFQRKVAENYEKLKDN--IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      |++.....+.++...+.|+.....  .+++||++++++++.++|.+.|.
T Consensus       122 R~~~~~~~~~~~~~~~~~e~~~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         122 RKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             STTCCCCHHHHHHHHHHCCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CcCCCccHHHHHhhHHHhhCCCcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence            766655555555555555443322  68999999999999999998875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.78  E-value=8.6e-20  Score=138.57  Aligned_cols=167  Identities=19%  Similarity=0.200  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeC-CCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNF-PDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLT   86 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (227)
                      |.|+|.|+|||||||+|+.|+++++..++++.. +++ .....+.+..++.++.++..+++.....           .+.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~-----------~~~   69 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIG-----------IVR   69 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHH-----------HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhH-----------HHH
Confidence            468999999999999999999999888877644 332 1224566777888888888777765552           222


Q ss_pred             HHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhc-ccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         87 KLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQ-PEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        87 ~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ..+...              ...+|+|+|     ++|++..+.    .++.. +......+.++++|+++++.+.+|+..
T Consensus        70 ~~~~~~--------------~~~~~~vl~-----g~p~~~~~~----~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~  126 (182)
T d1s3ga1          70 ERLSKS--------------DCDNGFLLD-----GFPRTVPQA----EALDQLLADMGRKIEHVLNIQVEKEELIARLTA  126 (182)
T ss_dssp             HHHTSS--------------TTSSCEEEE-----SCCCSHHHH----HHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT
T ss_pred             Hhhccc--------------ccccceeee-----ccccchhHH----HHHHHHhhcCCCeeeeccchhhhhhhhhhhhhc
Confidence            222211              123445557     666554431    22211 223344678999999999999999864


Q ss_pred             CCCCccc-----HHHHHH---HHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        166 GDERYEQ-----TDFQRK---VAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       166 r~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      +. ..+.     ..|.+.   +.+.|...  +.++.||+++++++|+++|.++|+
T Consensus       127 ~~-~~e~i~~R~~~y~~~~~~i~~~y~~~--~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         127 DD-NPDTVTNRLEVNMNQTAPLLAFYDSK--EVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             TC-SHHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEECCCCHHHHHHHHHHHHH
Confidence            32 1111     112111   12222211  268999999999999999988875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.75  E-value=3.4e-18  Score=129.06  Aligned_cols=168  Identities=13%  Similarity=0.171  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcC---------CCCHHHHHHHHHhhhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKI---------ELPDQAAHLLFSANRW   79 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~   79 (227)
                      ++|+|+|+|||||||+++.|++.|+..++++..+..       +...........         ........ .    ..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~   69 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF-------GSVMFEVAKEENLVSDRDQMRKMDPETQK-R----IQ   69 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH-------HHHHHHHHHHTTSCSSGGGGSSCCHHHHH-H----HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEec-------CChhHHHHHHHHhhhhhhhhhhhhchhhH-H----HH
Confidence            689999999999999999999999999988876553       222222222211         01111110 0    01


Q ss_pred             hhhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHH
Q psy16874         80 EREPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        80 ~~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~  159 (227)
                      .........+..+..+++                 |++..+...+.... +.....     ...+.|+.+|||+++|+++
T Consensus        70 ~~~~~~~~~~~~~~~vl~-----------------d~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~i~l~~~~~~~  126 (190)
T d1khta_          70 KMAGRKIAEMAKESPVAV-----------------DTHSTVSTPKGYLP-GLPSWV-----LNELNPDLIIVVETTGDEI  126 (190)
T ss_dssp             HHHHHHHHHHHTTSCEEE-----------------ECCSEEEETTEEEE-SSCHHH-----HHHHCCSEEEEEECCHHHH
T ss_pred             HHHHHHHHHHhCCCeEEE-----------------CCcccchHHHHHHH-hhhhhh-----hhhccccceeeecCCHHHH
Confidence            111112233456667777                 87765443322221 122111     1234789999999999999


Q ss_pred             HHhcCCCCC---Cccc---HHHHHHHHH----HHHHHhhCC-eEEEcCCCCHHHHHHHHHHHH
Q psy16874        160 QRRKGFGDE---RYEQ---TDFQRKVAE----NYEKLKDNI-WIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       160 ~~R~~~r~~---~~~~---~~~~~~~~~----~~~~~~~~~-~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .+|+.++..   ....   .+..+....    .|......+ +++++++++++++.++|.+.|
T Consensus       127 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         127 LMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            999855321   2222   222333332    333333334 445567799999999999876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=6e-19  Score=135.25  Aligned_cols=172  Identities=14%  Similarity=0.109  Sum_probs=99.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCC---CCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDR---TISTGHIIDEYLRKKIELPDQAAHLLFSANRWERE   82 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (227)
                      ++|++|+|+|++||||||+++.|+++++.    +..+.+|..   +......+..++.+..... ......+...+.   
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~----~~~~~ep~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~---   78 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND----ICLLTEPVEKWRNVNGVNLLELMYKDPKKWA-MPFQSYVTLTML---   78 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTT----EEEECCTHHHHTCBTTBCHHHHHHHSHHHHH-HHHHHHHHHHHH---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCC----cEEEEEecCccccccchhHhhhhcccccccc-chHHHHHHHHHH---
Confidence            67999999999999999999999997753    344555421   1111223444444321110 011111111111   


Q ss_pred             hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCC-CChh----hhhcc-cCCCCCCCEEEEeecCH
Q psy16874         83 PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG-MDIS----WCFQP-EKGLPKPDAVLLFKLNE  156 (227)
Q Consensus        83 ~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~-~~~~----~~~~~-~~~~~~pd~vi~L~~~~  156 (227)
                       ...........++.           ...++.||++.+...+...... ....    +...+ ....+.||++|||++|+
T Consensus        79 -~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i~Ld~~~  146 (197)
T d2vp4a1          79 -QSHTAPTNKKLKIM-----------ERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSP  146 (197)
T ss_dssp             -HHHHCCCCSSEEEE-----------ESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCH
T ss_pred             -HHHHHHhccccccc-----------CceeecchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcccccchhheeecCH
Confidence             01111112233333           2334456666666665544310 0011    11111 12346899999999999


Q ss_pred             HHHHHhcCCCCCCcc---cHHHHHHHHHHHHHHhhC-------CeEEEcCC
Q psy16874        157 EALQRRKGFGDERYE---QTDFQRKVAENYEKLKDN-------IWIDIDAD  197 (227)
Q Consensus       157 e~~~~R~~~r~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~Id~~  197 (227)
                      +++.+|+.+|++..+   +.++++.++..|+++...       ++++||++
T Consensus       147 ~~~~~Ri~~R~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~v~~iD~n  197 (197)
T d2vp4a1         147 EVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD  197 (197)
T ss_dssp             HHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred             HHHHHHHHHhCchhhhcCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence            999999987766655   478999999999998632       68899975

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.72  E-value=1.4e-16  Score=120.45  Aligned_cols=170  Identities=14%  Similarity=0.105  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHH-HHhhcC--------CCCHHHHHHHHHhhhh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDE-YLRKKI--------ELPDQAAHLLFSANRW   79 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~   79 (227)
                      ++|+|+|+|||||||+++.|++.|+..|+++..++.+       ..... ......        ..+. .....+...+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   73 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG-------DFMLATALKLGYAKDRDEMRKLSV-EKQKKLQIDAA   73 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH-------HHHHHHHHTTTSCSSHHHHTTSCH-HHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECC-------CcchHHHHHHHhhhhhhhccccch-hhcccCHHHHH
Confidence            6799999999999999999999999999998877643       11111 111111        1111 12222222222


Q ss_pred             hhh-hHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHH
Q psy16874         80 ERE-PTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        80 ~~~-~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~  158 (227)
                      ... +.+..  .....+++                 |.+.+........ .+......     ..+.|+++|||++|+++
T Consensus        74 ~~~~~~~~~--~~~~~~i~-----------------~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~i~l~~~~~~  128 (194)
T d1nksa_          74 KGIAEEARA--GGEGYLFI-----------------DTHAVIRTPSGYL-PGLPSYVI-----TEINPSVIFLLEADPKI  128 (194)
T ss_dssp             HHHHHHHHH--TCSSEEEE-----------------EECSEEEETTEEE-ESSCHHHH-----HHHCCSEEEEEECCHHH
T ss_pred             HHHHHHHHH--hCCCcEEE-----------------EccCchHHHHHHH-HhHHHHHH-----hhhccccceEEecCHHH
Confidence            222 22221  22344444                 4332221111111 12222222     22368999999999999


Q ss_pred             HHHhcCCCCC----CcccHHH---H----HHHHHHHHHHhhCCeEEEc-CCCCHHHHHHHHHHHH
Q psy16874        159 LQRRKGFGDE----RYEQTDF---Q----RKVAENYEKLKDNIWIDID-ADKDIDTLGLIVKDIV  211 (227)
Q Consensus       159 ~~~R~~~r~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~Id-~~~s~~~v~~~I~~~i  211 (227)
                      +.+|+.++..    .......   .    +.....+......++++|+ +++++++++++|.+.|
T Consensus       129 ~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         129 ILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            9999854321    1111111   1    1112222222333544455 6799999999999876

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.71  E-value=4e-17  Score=134.16  Aligned_cols=164  Identities=15%  Similarity=0.060  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC------CCCCchHHHHHHHhh---cCCCCHHHHH-----HH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD------RTISTGHIIDEYLRK---KIELPDQAAH-----LL   73 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~   73 (227)
                      ...|+|+|++||||||+++.|++.+...+.++..++||.      .+.+..+.+.+....   +.........     +.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP~~~W~~~~g~~~l~~iy~~~~r~~~g~~~~~~~~~~~~~~Q~   84 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQS   84 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHHHHTTBTTBCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCchHhhhccCCCcHHHHHHHhHHhccccccchhhHHHHHHHHHH
Confidence            456999999999999999999999998888999999982      133333333221111   2221111111     11


Q ss_pred             -HHhhhhhhhhHHHHHH------------HcCCEEEEecccccccccCCCCCCCCcccchhh---hhhhccCC-CChhhh
Q psy16874         74 -FSANRWEREPTLTKLI------------EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV---AFSAAKEG-MDISWC  136 (227)
Q Consensus        74 -~~~~~~~~~~~i~~~~------------~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~---~~~~~~~~-~~~~~~  136 (227)
                       |...+......+.+.+            ..+.+||+                 |||+++..   +......| ++...+
T Consensus        85 ~f~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~VI~-----------------DR~~~Ss~~~F~~~~~~~G~i~~~~~  147 (331)
T d1osna_          85 LFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLS-----------------DRHPIASTICFPLSRYLVGDMSPAAL  147 (331)
T ss_dssp             HTHHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEE-----------------ESCTHHHHTHHHHHHHHHTSSCGGGH
T ss_pred             HHhhhHHHHHHHHHHHHhhhhhcccccccCCCCEEEE-----------------ECCHhHHHHHHHHHhhhcCCCCHHHH
Confidence             1111111112333222            12345666                 99999863   33333222 333323


Q ss_pred             hc---ccCCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        137 FQ---PEKGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       137 ~~---~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      ..   .....+.||++|||++||+++.+|+.+|++..|  +.+|+++++..|..+..
T Consensus       148 ~~l~~~~~~~~~pdliIyLd~~pe~~l~RIk~RgR~~E~i~~eYL~~L~~~Y~~L~n  204 (331)
T d1osna_         148 PGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVYIMLIN  204 (331)
T ss_dssp             HHHHTTCCCCCSCCEEEEEECCHHHHHHHCC------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            22   233456899999999999999999998876665  48999999999988754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.69  E-value=2.5e-17  Score=134.98  Aligned_cols=161  Identities=17%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC------CCCCchHHHHHHHhh------cCCCCHHH----
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD------RTISTGHIIDEYLRK------KIELPDQA----   69 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~----   69 (227)
                      +..+.|+|+|++||||||+++.|++.+...  .+..+.||.      .+.+.   +..++.+      +.......    
T Consensus         2 p~~lrI~IEG~iGsGKTTl~~~La~~l~~~--~v~~~~EP~~~W~~~~~~~~---L~~~y~~~~r~~~~~~~~~d~~~~~   76 (329)
T d1e2ka_           2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRD--DIVYVPEPMTYWRVLGASET---IANIYTTQHRLDQGEISAGDAAVVM   76 (329)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC----C--CEEEECCCHHHHHTTSSSCH---HHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             CCceEEEEECCcCCCHHHHHHHHHHHhCCC--CeEEeccchhhccCCCCCch---HHHHHhhHHhhccccccccchhhhh
Confidence            445679999999999999999999988654  355677761      12333   2333322      11111111    


Q ss_pred             -HHHHHHhhhhh-hhhHHHHH----------HHcCCEEEEecccccccccCCCCCCCCcccchhh---hhhhccCC-CCh
Q psy16874         70 -AHLLFSANRWE-REPTLTKL----------IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGV---AFSAAKEG-MDI  133 (227)
Q Consensus        70 -~~~~~~~~~~~-~~~~i~~~----------~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~---~~~~~~~~-~~~  133 (227)
                       ..+.+++.++. ....+.+.          ...+.+||+                 |||++|..   +......| ++.
T Consensus        77 ~~~Ql~fa~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivI~-----------------DRs~~S~~~vFa~~~~~~G~ms~  139 (329)
T d1e2ka_          77 TSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIF-----------------DRHPIAALLCYPAARYLMGSMTP  139 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGEEEECC----CCCSEEEEE-----------------ECCHHHHHTHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCceee-----------------ecchhhhhHHHHHHHHhcCCCCH
Confidence             11122222222 11222222          223455666                 99999873   33333322 333


Q ss_pred             hhhh---cccCCCCCCCEEEEeecCHHHHHHhcCCCCCCccc--HHHHHHHHHHHHHHhh
Q psy16874        134 SWCF---QPEKGLPKPDAVLLFKLNEEALQRRKGFGDERYEQ--TDFQRKVAENYEKLKD  188 (227)
Q Consensus       134 ~~~~---~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~  188 (227)
                      ..+.   .+....+.||++|||++||+++.+|+.+|++.+|.  .+|+++++..|..+..
T Consensus       140 ~~~~~l~~~~~~~~~pdliIyLd~~pe~~l~RI~~RgR~~E~idl~YL~~L~~~Y~~L~n  199 (329)
T d1e2ka_         140 QAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLAN  199 (329)
T ss_dssp             HHHHHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHh
Confidence            3332   23344567999999999999999999887766664  8899999999988754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.66  E-value=5.4e-17  Score=133.48  Aligned_cols=164  Identities=16%  Similarity=0.081  Sum_probs=97.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC------CCCCchHHHHHHHhh--cCCCCHHHH-H-----H
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD------RTISTGHIIDEYLRK--KIELPDQAA-H-----L   72 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~-~-----~   72 (227)
                      ....|+|+|++||||||+++.|++.++..+ .+..+.||.      .+.++.+.+.+....  ......... .     +
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~~EPm~yW~~~~g~~~l~~iy~~~~~~~~~~~~~~~~~~~~~~~Q   83 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQGNLAVDDAALITAHYQ   83 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEECCCHHHHHTSSSSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCC-CeEEEeCchhhhcccCCCchHHHHHHhHHhccccccchhhHHHHHHHHH
Confidence            467899999999999999999999988655 666777771      133333333222111  111122111 1     1


Q ss_pred             HHHhhhhhhhhHHHHH----------HHcCCEEEEecccccccccCCCCCCCCcccchh---hhhhhccCC-CChhhhhc
Q psy16874         73 LFSANRWEREPTLTKL----------IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSG---VAFSAAKEG-MDISWCFQ  138 (227)
Q Consensus        73 ~~~~~~~~~~~~i~~~----------~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~---~~~~~~~~~-~~~~~~~~  138 (227)
                      ..++.....+......          ...+.+||+                 |||++|.   |+......| ++...+..
T Consensus        84 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI~-----------------DR~~~Ss~~iF~~~~y~~G~ls~~~~~~  146 (333)
T d1p6xa_          84 SRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVF-----------------DRHPVASTVCFPAARYLLGDMSMCALMA  146 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEE-----------------ESCTHHHHTHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccCCCeEEE-----------------ECCcccchHHHHHHhhcCCCCCHHHHHH
Confidence            1111111111111111          112334455                 9999987   454444333 44333332


Q ss_pred             c---cCCCCCCCEEEEeecCHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHHHhh
Q psy16874        139 P---EKGLPKPDAVLLFKLNEEALQRRKGFGDERYE--QTDFQRKVAENYEKLKD  188 (227)
Q Consensus       139 ~---~~~~~~pd~vi~L~~~~e~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~  188 (227)
                      +   ....+.||++|||++|++++.+|+.+|++..|  +.+|+++++..|..+..
T Consensus       147 l~~~~~~~~~pd~iIyLd~~pe~~l~RI~~RgR~~E~id~~YL~~L~~~Y~~l~n  201 (333)
T d1p6xa_         147 MVATLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQIDITLIATLRNVYFMLVN  201 (333)
T ss_dssp             HHTTCCCCCTTEEEEEEECCHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCCCEEEEEeCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHh
Confidence            2   23456789999999999999999987766665  48899999999987753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.62  E-value=2.5e-16  Score=117.65  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=90.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCC--CCHHHHHHHHHhhhhhhhh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIE--LPDQAAHLLFSANRWEREP   83 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   83 (227)
                      +.|++|+|.|+|||||||+++.|++.++.   +...+.        +..++..+.....  .......... ........
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~---~~~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   69 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGV---PKVHFH--------SDDLWGYIKHGRIDPWLPQSHQQNR-MIMQIAAD   69 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSS---CEEEEC--------TTHHHHTCCSSCCCTTSSSHHHHHH-HHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC---CEEEec--------HHHHHHHHhcCCcccccchhhhHHH-HHHHHHHH
Confidence            36899999999999999999999987654   333332        1112222221110  0000000000 00001112


Q ss_pred             HHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhc
Q psy16874         84 TLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRK  163 (227)
Q Consensus        84 ~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~  163 (227)
                      .+......+..+++                 |..     ...        .....+. ....+..++||+++++++.+|+
T Consensus        70 ~~~~~~~~~~~vi~-----------------~~~-----~~~--------~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~  118 (176)
T d1zp6a1          70 VAGRYAKEGYFVIL-----------------DGV-----VRP--------DWLPAFT-ALARPLHYIVLRTTAAEAIERC  118 (176)
T ss_dssp             HHHHHHHTSCEEEE-----------------CSC-----CCT--------TTTHHHH-TTCSCEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHhcCCCeEe-----------------ccc-----ccH--------HHHHHHH-hcccccccccCCCCHHHHHHHH
Confidence            34444566777777                 511     100        1111111 2235667999999999999999


Q ss_pred             CCCCCCcc-cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        164 GFGDERYE-QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       164 ~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      ..|+.... ..+....+.+.+........++||++ .+++++.+.|.+.|..
T Consensus       119 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~idt~~~~~ee~~~~I~~~l~~  170 (176)
T d1zp6a1         119 LDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQS  170 (176)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred             HhCCCccccchhhHHHHHHHHhhcccccCEEEECCCCCHHHHHHHHHHHHHc
Confidence            87754443 35555555554443333244567655 7899988888887763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=3.5e-16  Score=116.78  Aligned_cols=29  Identities=31%  Similarity=0.516  Sum_probs=26.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .|+++.|+|+|+|||||||+++.|++.++
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999999999875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.60  E-value=3.9e-16  Score=115.89  Aligned_cols=63  Identities=17%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             CCEEEEeecCHHHHHHhcCCCC--C--CcccHHHHH----HHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGD--E--RYEQTDFQR----KVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~--~--~~~~~~~~~----~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      ...+|||++|++++.+|+..+.  .  ...+....+    .....|++.+.   ++||++ .+++++.++|.+.|
T Consensus        89 ~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~~~ad---~~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_          89 AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKAN---FILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCS---EEEECTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHHHh
Confidence            4579999999999999986542  1  122322222    22335665544   788976 79999999998876

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.60  E-value=2.9e-15  Score=111.26  Aligned_cols=165  Identities=18%  Similarity=0.184  Sum_probs=85.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKL   88 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (227)
                      ++|+|+|+|||||||+++.|++.++...+    +.        +..+.....++......... ............+...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~----~~--------~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   69 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY----IE--------GDIINHMVVGGYRPPWESDE-LLALTWKNITDLTVNF   69 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEE----EE--------HHHHHTTCCTTCCCGGGCHH-HHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEE----Ee--------hHHHHHHHhccccchhHHHH-HHHHHHHHHHHHHHHH
Confidence            58999999999999999999998865322    11        11111111111100000000 0000011111344555


Q ss_pred             HHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCCC
Q psy16874         89 IEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGDE  168 (227)
Q Consensus        89 ~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~~  168 (227)
                      +..+..+++                 |..+..........     . +  .......+..+++|++|++++.+|+..|+.
T Consensus        70 ~~~~~~~ii-----------------d~~~~~~~~~~~~~-----~-~--~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  124 (176)
T d2bdta1          70 LLAQNDVVL-----------------DYIAFPDEAEALAQ-----T-V--QAKVDDVEIRFIILWTNREELLRRDALRKK  124 (176)
T ss_dssp             HHTTCEEEE-----------------ESCCCHHHHHHHHH-----H-H--HHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             HhcCCCccc-----------------ccccccHHHHHHHH-----H-H--HHhcCCCceEEEeccccHHHHHHHHHhCCC
Confidence            667777777                 75444333221111     0 1  112223456789999999999999987653


Q ss_pred             Ccc-cHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        169 RYE-QTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      ... .........+ +........++||++ .+++++.+.|.+++.
T Consensus       125 ~~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~~~~~I~~i~~  169 (176)
T d2bdta1         125 DEQMGERCLELVEE-FESKGIDERYFYNTSHLQPTNLNDIVKNLKT  169 (176)
T ss_dssp             ----CGGGGHHHHH-HHHTTCCTTSEEECSSSCGGGHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHH-HHhCCCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence            322 2223333332 222222255677776 688887777666664

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=9.3e-16  Score=114.17  Aligned_cols=62  Identities=15%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             CCEEEEeecCHHHHHHhcCCCCCC--ccc---HHHHHHH----HHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHH
Q psy16874        146 PDAVLLFKLNEEALQRRKGFGDER--YEQ---TDFQRKV----AENYEKLKDNIWIDIDAD-KDIDTLGLIVKDI  210 (227)
Q Consensus       146 pd~vi~L~~~~e~~~~R~~~r~~~--~~~---~~~~~~~----~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~  210 (227)
                      ...+|||+++++++.+|+..+..+  ...   .+.++.+    ...|++.+.   ++||++ .+++++.++|.+.
T Consensus        93 ~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad---~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1          93 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVAT---MRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCS---EEEECSSSCHHHHHHHHHTT
T ss_pred             ccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhhCC---EEEECCCCCHHHHHHHHHhc
Confidence            346899999999999999654322  221   2223332    234555544   789977 6999999888764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.53  E-value=1.3e-15  Score=113.82  Aligned_cols=61  Identities=13%  Similarity=0.101  Sum_probs=39.8

Q ss_pred             EEEEeecCHHHHHHhcCCC---C--CCccc---HHHHHHH----HHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHH
Q psy16874        148 AVLLFKLNEEALQRRKGFG---D--ERYEQ---TDFQRKV----AENYEKLKDNIWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       148 ~vi~L~~~~e~~~~R~~~r---~--~~~~~---~~~~~~~----~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      .+|||++|++++.+|+..+   .  .....   .+.++.+    ...|++.+   .++||++++++++.++|.+.|
T Consensus        96 ~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a---~~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_          96 TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVA---HYVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHC---SEEEETTSCHHHHHHHHHHHT
T ss_pred             eeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcC---CEEEcCCCCHHHHHHHHHHHc
Confidence            6999999999999998532   1  11211   2222222    23444443   378999999999988887765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.52  E-value=3.1e-13  Score=104.07  Aligned_cols=167  Identities=15%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPT   84 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (227)
                      ++|++|+|+|+|||||||+++.|.+.+.. .++++.++.        |+.++..+..............+  .+  ....
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld--------gD~iR~~l~~~l~ys~~~r~~~~--~r--~~~~   89 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD--------GDNIRFGLNKDLGFSEADRNENI--RR--IAEV   89 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC--------HHHHTTTTTTTCCSSHHHHHHHH--HH--HHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc--------chHHHHhhcCCCCCChhHHHHHH--HH--HHHH
Confidence            57999999999999999999999998864 477777665        45555444332222222111000  00  0123


Q ss_pred             HHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcc------cCCCCCCCEEEEeecCHHH
Q psy16874         85 LTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQP------EKGLPKPDAVLLFKLNEEA  158 (227)
Q Consensus        85 i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~pd~vi~L~~~~e~  158 (227)
                      ......++..|++                 +-    ..++...+     .+..++      ......+.+.|||+||.++
T Consensus        90 a~~~~~~g~~viv-----------------~~----i~~~~~~R-----~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~  143 (208)
T d1m7ga_          90 AKLFADSNSIAIT-----------------SF----ISPYRKDR-----DTARQLHEVATPGEETGLPFVEVYVDVPVEV  143 (208)
T ss_dssp             HHHHHHTTCEEEE-----------------EC----CCCCHHHH-----HHHHHHHHCCCTTCSCCCCEEEEEEECCHHH
T ss_pred             HHHHhccCCceee-----------------ec----ccccHHHH-----HHHHHHhhhhccchhcCCceEEEEEcCCHHH
Confidence            3344567888887                 30    11111111     222211      1233456789999999999


Q ss_pred             HHHhcCCCCCCcccH-----HHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHHH
Q psy16874        159 LQRRKGFGDERYEQT-----DFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVID  213 (227)
Q Consensus       159 ~~~R~~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~~  213 (227)
                      +.+|..++  .+...     ..+..+...|+.+.. +.++||++ .|+++..++|.+.|..
T Consensus       144 ~~~Rd~k~--~y~~~~~~~~~~~~gvd~~ye~P~~-~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         144 AEQRDPKG--LYKKAREGVIKEFTGISAPYEAPAN-PEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             HHTSCTTC--HHHHHHHTSSSSCBTTTBCCCCCSS-CSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhccc--chhhhhcCcccceecccccCCCCCC-CcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            99998653  11100     000001112222222 56889977 6999999888888763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.47  E-value=2.8e-14  Score=106.16  Aligned_cols=64  Identities=11%  Similarity=0.022  Sum_probs=42.2

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIV  211 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i  211 (227)
                      .+..+|+|+||++++.+|...|+++...  ......+.++.... .-++||++ .+++++++.|.++|
T Consensus       112 ~~~~~v~l~~~~e~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~-~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         112 LDVLWVGVRCDGAVAEGRETARGDRVAG--MAAKQAYVVHEGVE-YDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             CCEEEEEEECCHHHHHHHHHHTSSSCTT--HHHHHTTGGGTTCC-CSEEEETTSSCHHHHHHHHHTTC
T ss_pred             CceeecccCCCHHHHHHHHHhcCCcchh--hhhhhhhhhhcCCC-CCEEEECCCCCHHHHHHHHHHhc
Confidence            5567899999999999999876555432  11111111111111 34789987 69999999988654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.45  E-value=5.6e-14  Score=104.19  Aligned_cols=29  Identities=31%  Similarity=0.329  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      |.|+|+|+|||||||+|+.|++.++...+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i   33 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYI   33 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            45889999999999999999999976443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.8e-13  Score=101.10  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=34.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|++|+|+|+|||||||+++.|+++++..++++..+.
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~   54 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   54 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchh
Confidence            35889999999999999999999999999999887754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=7.1e-13  Score=98.99  Aligned_cols=184  Identities=17%  Similarity=0.078  Sum_probs=93.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTK   87 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (227)
                      ++.|+|+|+|||||||+|+.|+++++...++     +.     ....+.+............... +....... .....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~-----~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~   74 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAW-----EY-----GREFVFEKLGGDEQAMQYSDYP-QMALGHQR-YIDYA   74 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEEC-----CT-----THHHHHHSSSSCTTSSCTTTHH-HHHHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEe-----ee-----hHHHhhhhccCCcccccHHHHH-HHHHHHHH-HHHHh
Confidence            5789999999999999999999998653322     11     1122222111111111100000 00000000 11112


Q ss_pred             HHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCCC
Q psy16874         88 LIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFGD  167 (227)
Q Consensus        88 ~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r~  167 (227)
                      .......+++                 |++..+...+............... .....+++.+++..+......+...+.
T Consensus        75 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (192)
T d1lw7a2          75 VRHSHKIAFI-----------------DTDFITTQAFCIQYEGKAHPFLDSM-IKEYPFDVTILLKNNTEWVDDGLRSLG  136 (192)
T ss_dssp             HHHCSSEEEE-----------------SSCHHHHHHHHHHHHSCCCHHHHHH-HHHSCCSEEEEEECCCC----------
T ss_pred             hhhccccccc-----------------ccccHHHHHHHHHhcCCchHHHHhh-hhhhhhccccccccccccccchhhhhc
Confidence            2335566777                 8887777776544311111111111 112255666777666555555443322


Q ss_pred             CCcccHHHHHHHHHHHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhhhcCCCCC
Q psy16874        168 ERYEQTDFQRKVAENYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIKKSQFSPL  223 (227)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~~~~~  223 (227)
                      +.....++.+.+.+.++.... +++.|++ .+.++..+.|.+.|+.+|......++
T Consensus       137 ~~~~~~~~~~~~~~~l~~~~~-~~i~i~~-~~~~e~~~~i~~~I~~ll~~~~~~~~  190 (192)
T d1lw7a2         137 SQKQRQQFQQLLKKLLDKYKV-PYIEIES-PSYLDRYNQVKAVIEKVLNEEEISEL  190 (192)
T ss_dssp             -CCSHHHHHHHHHHHHHGGGC-CCEEEEC-SSHHHHHHHHHHHHHHHTSCCCCSSC
T ss_pred             chhhhHHHHHHHHHHHHHCCC-CEEEeCC-CCHHHHHHHHHHHHHHHHCcCcHhhc
Confidence            322334555556555555433 6777775 68999999999999999987666554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=2.5e-13  Score=102.26  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=87.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCCCch--------HHHHHHHhhcCCCCHHHHHHHHHhhh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTISTG--------HIIDEYLRKKIELPDQAAHLLFSANR   78 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (227)
                      |++|+|+||+||||||+++.|.+.++..++++-+ ++.|..+...|        +.+......+..+..+...    ...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~----~~~   77 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIH----GGL   77 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEG----GGT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcc----cCc
Confidence            6899999999999999999999988655555433 55554332212        2222222222110000000    000


Q ss_pred             --hh-hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874         79 --WE-REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        79 --~~-~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                        +. ....+...+..|..+++                 |               .+.+.+..+....+.+..++++.+|
T Consensus        78 ~~~g~~~~~~~~~~~~g~~~i~-----------------~---------------~~~~g~~~l~~~~~~~~~i~i~~~s  125 (182)
T d1znwa1          78 HRSGTLAQPVRAAAATGVPVLI-----------------E---------------VDLAGARAIKKTMPEAVTVFLAPPS  125 (182)
T ss_dssp             EEEEEEHHHHHHHHHHTCCEEE-----------------E---------------CCHHHHHHHHHHCTTSEEEEEECSC
T ss_pred             cccccccchhhhhhhcCCcccc-----------------c---------------cccchhhhhhhcCcceeEEeeeccc
Confidence              01 11244455556665555                 3               1112222233334466566667788


Q ss_pred             HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIV  211 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i  211 (227)
                      ++++.+|+.+|+...+ ....+++..+-.+....   ..+++ ++ +++++++++.++|
T Consensus       126 ~e~L~~RL~~Rg~~~~-e~I~~Rl~~~~~e~~~~~~fD~vI~-Nd-dle~a~~~l~~iI  181 (182)
T d1znwa1         126 WQDLQARLIGRGTETA-DVIQRRLDTARIELAAQGDFDKVVV-NR-RLESACAELVSLL  181 (182)
T ss_dssp             HHHHHHHHHTTSCSCH-HHHHHHHHHHHHHHHGGGGSSEEEE-CS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCcchH-HHHHHHHHHHHHHHhhHhcCCEEEE-Cc-CHHHHHHHHHHHh
Confidence            9999999987754322 22233333322222211   44444 33 7999999998876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.36  E-value=4.1e-12  Score=92.22  Aligned_cols=45  Identities=11%  Similarity=0.051  Sum_probs=35.2

Q ss_pred             CCCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhh
Q psy16874        144 PKPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAENYEKLKD  188 (227)
Q Consensus       144 ~~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  188 (227)
                      ..+..+|||++|++++.+|+..|+......+.++++.+.|+++..
T Consensus       104 ~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~  148 (152)
T d1ly1a_         104 GWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG  148 (152)
T ss_dssp             TCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhcCCCHHHHHHHHHccCCCCCCHHHHHHHHHHHHhhcC
Confidence            356679999999999999998875544457777888888877654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.35  E-value=3.6e-12  Score=98.47  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +.++|+|.|||||||||+|+.|+++|++.|++++.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            45779999999999999999999999988877543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=4.9e-12  Score=92.37  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             CEEEEeecCHHHHHHhcCCCCCC-----cc-cH----HHHHHHHHHHHHHhhCCeEEEcCC-CCHHHHHHHHHHHHH
Q psy16874        147 DAVLLFKLNEEALQRRKGFGDER-----YE-QT----DFQRKVAENYEKLKDNIWIDIDAD-KDIDTLGLIVKDIVI  212 (227)
Q Consensus       147 d~vi~L~~~~e~~~~R~~~r~~~-----~~-~~----~~~~~~~~~~~~~~~~~~~~Id~~-~s~~~v~~~I~~~i~  212 (227)
                      ...+++.+++.++..|...+...     .. ..    .........|+...   .++||++ .++++++++|.+.|+
T Consensus        96 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---d~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_          96 GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIA---DVTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHC---SEEC-----CHHHHHHHHHHHHC
T ss_pred             ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccC---CEEEECCCCCHHHHHHHHHHHhC
Confidence            57999999999999998653211     11 12    22223333555443   3789986 699999999998763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=1.1e-12  Score=99.25  Aligned_cols=65  Identities=12%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH-----HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE-----NYEKLKDNIWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      .+|.+||++||.+++.+|+.+|.. ....++......     .....   .-++|++++|++++..+|.+.+.+
T Consensus       119 ~~d~vI~v~a~~e~r~~Rl~~R~~-~~~~~~~~~~~~q~~~~~~~~~---aD~vI~N~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         119 RLHGTLLVAAPLEERVRRVMARSG-LSREEVLARERAQMPEEEKRKR---ATWVLENTGSLEDLERALKAVLAE  188 (191)
T ss_dssp             GSSEEEEECCCHHHHHHHHHTTTC-CTTHHHHHHHTTSCCHHHHHHH---CSEEECCSSHHHHHHHHHHHHHHS
T ss_pred             cceeEEEEecchhhHHHHHHhccc-chHHHHHHHHHhCCCHHHHHHh---CCEEEECCCCHHHHHHHHHHHHHH
Confidence            468999999999999999977632 222222222211     11222   236899999999998888887754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.8e-11  Score=92.63  Aligned_cols=170  Identities=16%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhC-CCCe-EEeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHHhhhhh
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKN-NIPS-QFVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFSANRWE   80 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~-~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (227)
                      |+|+||+||||||+++.|.+.++.. ...+ ..++.|..+..-        .+.+......+..+..+.    +....+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~----~~~~~Yg   78 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE----FSGNLYG   78 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEE----ETTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeE----EcCccee
Confidence            8899999999999999999998754 2232 334444322211        122333333332110000    0000011


Q ss_pred             -hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHH
Q psy16874         81 -REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEAL  159 (227)
Q Consensus        81 -~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~  159 (227)
                       ....+...+..|.++++                 +               .+...+..+....+.|..++++..+.+++
T Consensus        79 ~~~~~v~~~~~~g~~~~~-----------------~---------------~~~~~~~~l~~~~~~~~~I~i~~~~~e~l  126 (190)
T d1lvga_          79 TSKEAVRAVQAMNRICVL-----------------D---------------VDLQGVRSIKKTDLCPIYIFVQPPSLDVL  126 (190)
T ss_dssp             EEHHHHHHHHHTTCEEEE-----------------E---------------CCHHHHHHHTTSSCCCEEEEEECSCHHHH
T ss_pred             cccchhhhhhcCCCceee-----------------c---------------chHhhhhhhhhccccceEEEEecchHHHH
Confidence             11345666677776666                 3               11122333344455676677777788999


Q ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHHHh--hC----CeEEEcCCCCHHHHHHHHHHHHHHHhhhcC
Q psy16874        160 QRRKGFGDERYEQTDFQRKVAENYEKLK--DN----IWIDIDADKDIDTLGLIVKDIVIDTIKKSQ  219 (227)
Q Consensus       160 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~----~~~~Id~~~s~~~v~~~I~~~i~~~l~~~~  219 (227)
                      .+|+..|+...+ .....++...-..+.  ..    ..+++|.  +.++++++|.++|.+.+++.+
T Consensus       127 ~~RL~~R~~~~~-e~i~~rl~~~~~~~~~~~~~~~fd~iI~N~--dle~a~~~l~~iI~~~~~k~~  189 (190)
T d1lvga_         127 EQRLRLRNTETE-ESLAKRLAAARTDMESSKEPGLFDLVIIND--DLDKAYATLKQALSEEIKKAQ  189 (190)
T ss_dssp             HHHHHHHTCSCH-HHHHHHHHHHHHHTTGGGSTTTCSEEEECS--SHHHHHHHHHHHTHHHHHHTT
T ss_pred             HHHHhhccccch-HHHHHHHHHHHHHHHhhhhcCCCCEEEECc--CHHHHHHHHHHHHHHHHhccC
Confidence            999976543322 333344443333322  11    3444443  799999999999988776643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=7e-11  Score=90.41  Aligned_cols=166  Identities=14%  Similarity=0.215  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCC--Ce-EEeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNI--PS-QFVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFSA   76 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~--~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   76 (227)
                      |++|+|+||+||||||+.+.|.+..+...+  ++ .+++.|..+..-        -+.+.....++.-+.-+.    +..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~----~~g   77 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE----VFG   77 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE----ETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEE----ECC
Confidence            789999999999999999999998764332  22 335555433211        123444444433110000    000


Q ss_pred             hhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecC
Q psy16874         77 NRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLN  155 (227)
Q Consensus        77 ~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~  155 (227)
                      ..+.. ...+...+..|.++++                 |               .+.+.+..+....+.+-.++++..+
T Consensus        78 ~~YGt~~~~v~~~~~~g~~~il-----------------d---------------id~~g~~~lk~~~~~~~~ifi~pps  125 (205)
T d1s96a_          78 NYYGTSREAIEQVLATGVDVFL-----------------D---------------IDWQGAQQIRQKMPHARSIFILPPS  125 (205)
T ss_dssp             EEEEEEHHHHHHHHTTTCEEEE-----------------E---------------CCHHHHHHHHHHCTTCEEEEEECSS
T ss_pred             ceeccccchHHHHHhcCCceee-----------------c---------------CcHHHHHHHHhhhcccceeeeeccc
Confidence            11111 2456777788888887                 4               2222233333333455566677788


Q ss_pred             HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHhhC---CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        156 EEALQRRKGFGDERYEQTDFQRKVAENYEKLKDN---IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       156 ~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      .+++.+|+.+|+...+ .....++..+..+....   ..+++|.  +++++++++.++|.
T Consensus       126 ~~~l~~RL~~Rg~~~~-~~i~~Rl~~a~~E~~~~~~fD~vIvNd--dl~~a~~el~~iI~  182 (205)
T d1s96a_         126 KIELDRRLRGRGQDSE-EVIAKRMAQAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHHHHHHHTTSCSCH-HHHHHHHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHhCCCEEEECc--CHHHHHHHHHHHHH
Confidence            8899999987644332 23334555444444322   5566653  79999999999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=6.5e-11  Score=90.51  Aligned_cols=67  Identities=15%  Similarity=0.097  Sum_probs=43.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH-----HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE-----NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTI  215 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l  215 (227)
                      ..|.+|+++||+++..+|+..|.. ....++..++..     .....   .-++|++++++++...++.+.|..+.
T Consensus       123 ~~d~ii~v~~~~~~r~~R~~~R~~-~s~e~~~~~~~~Q~~~~~k~~~---aD~vI~N~~~l~~~~~~l~~~i~~i~  194 (205)
T d1jjva_         123 LCDRILVVDVSPQTQLARSAQRDN-NNFEQIQRIMNSQVSQQERLKW---ADDVINNDAELAQNLPHLQQKVLELH  194 (205)
T ss_dssp             GCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHHHH---CSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhheeeecchHHHHHHHHHhcCC-chHHHHHHHHHhCCCHHHHHHh---CCEEEECCCChHHHHHHHHHHHHHHH
Confidence            468999999999999999987632 333334344432     12222   34789999999887777776666553

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.23  E-value=6.3e-12  Score=93.27  Aligned_cols=37  Identities=30%  Similarity=0.280  Sum_probs=33.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++|++|+|+|+|||||||+++.|+++|+..++....+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~   40 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSL   40 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhh
Confidence            5789999999999999999999999999888776543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.23  E-value=1.4e-11  Score=92.84  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=34.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +.+.+|.|+|++||||||+|+.|++.++..++++..+..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~   58 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccc
Confidence            457789999999999999999999999999999877664

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=6.2e-13  Score=99.37  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=75.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTL   85 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (227)
                      ++|.+|+++|+|||||||+++.|.+.+++..++             .+.+    ..                +......+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~-------------~D~~----~~----------------~~~~~~~~   58 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN-------------RDTL----GS----------------WQRCVSSC   58 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEE-------------HHHH----CS----------------HHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEc-------------hHHH----HH----------------HHHHHHHH
Confidence            568899999999999999999887655432211             1111    00                00112455


Q ss_pred             HHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCC
Q psy16874         86 TKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGF  165 (227)
Q Consensus        86 ~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~  165 (227)
                      ...+.+|..||+                 |.-..+.-.+         ..+..+.+....+-.+|+|++|.+++.+|...
T Consensus        59 ~~~l~~g~~vIi-----------------D~t~~~~~~R---------~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~  112 (172)
T d1yj5a2          59 QAALRQGKRVVI-----------------DNTNPDVPSR---------ARYIQCAKDAGVPCRCFNFCATIEQARHNNRF  112 (172)
T ss_dssp             HHHHHTTCCEEE-----------------ESCCCSHHHH---------HHHHHHHHHHTCCEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHCCCCcee-----------------eCcCCCHHHH---------HHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHH
Confidence            667788888888                 7332221111         22222333333455789999999999999865


Q ss_pred             CC---CC--cccHHHHHHHHHHHHHHhh--C--CeEEEcCC
Q psy16874        166 GD---ER--YEQTDFQRKVAENYEKLKD--N--IWIDIDAD  197 (227)
Q Consensus       166 r~---~~--~~~~~~~~~~~~~~~~~~~--~--~~~~Id~~  197 (227)
                      |.   ..  .-....+..+.+.|+....  +  .++.|+..
T Consensus       113 R~~~~~~~~~v~~~~~~~~~~~fe~P~~~Egf~~i~~i~~~  153 (172)
T d1yj5a2         113 REMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFR  153 (172)
T ss_dssp             HHHHCTTCCCCCHHHHHHHHHHCCCCCGGGSCSCEEEECCC
T ss_pred             hcccCcccCccHHHHHHHHHHhCCCCCcccCCcEEEEECCc
Confidence            42   11  1124445555555543322  1  45666644

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.8e-11  Score=91.11  Aligned_cols=71  Identities=13%  Similarity=0.075  Sum_probs=43.9

Q ss_pred             CCCEEEEeecCHHHHHHhcCCC-----CCCccc--HHHHHHHHHHHHHHhhC----CeEEEcCCCCHHHHHHHHHHHHHH
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFG-----DERYEQ--TDFQRKVAENYEKLKDN----IWIDIDADKDIDTLGLIVKDIVID  213 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r-----~~~~~~--~~~~~~~~~~~~~~~~~----~~~~Id~~~s~~~v~~~I~~~i~~  213 (227)
                      ..|+.|||++|++++.+|...|     +...+.  ..+.......|++....    .-++|+++.+.....+.|.+.|.+
T Consensus       130 ~~D~~i~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~~d~~~~i~~i~~~I~~  209 (213)
T d1uj2a_         130 LFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQD  209 (213)
T ss_dssp             HCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHH
T ss_pred             hhheeeeecCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCCCccHHHHHHHHHHHHH
Confidence            4689999999999998886433     223332  33444555566665321    346777665544445666666666


Q ss_pred             Hh
Q psy16874        214 TI  215 (227)
Q Consensus       214 ~l  215 (227)
                      .|
T Consensus       210 ll  211 (213)
T d1uj2a_         210 IL  211 (213)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.6e-11  Score=92.45  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +++|+|.|||||||||+|+.|+++|++.|++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGd   36 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   36 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            4589999999999999999999999998877543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=3.9e-10  Score=84.75  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC-CCCe-EEeeCCCCCCCc--------hHHHHHHHhhcCCCCHHHHHHHHHhhhh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKN-NIPS-QFVNFPDRTIST--------GHIIDEYLRKKIELPDQAAHLLFSANRW   79 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (227)
                      .|+|+||+||||||+++.|.+.++.. .+.+ ...+.|..+..-        .+.+.....++..+..+.    +....+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~----~~g~~Y   78 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ----FSGNYY   78 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEE----ETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeE----Ecccee
Confidence            38999999999999999999987643 2233 334444322111        122333333332100000    000011


Q ss_pred             h-hhhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCC-CCCCCEEEEeecCHH
Q psy16874         80 E-REPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKG-LPKPDAVLLFKLNEE  157 (227)
Q Consensus        80 ~-~~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pd~vi~L~~~~e  157 (227)
                      . ....+...+..|..+++                 |-.               ...+..+... ...+.+++++.++.+
T Consensus        79 g~~~~~i~~~~~~g~~~i~-----------------~~~---------------~~~~~~lk~~~~~~~~~i~~~~~~~e  126 (186)
T d1gkya_          79 GSTVASVKQVSKSGKTCIL-----------------DID---------------MQGVKSVKAIPELNARFLFIAPPSVE  126 (186)
T ss_dssp             EEEHHHHHHHHHHTSEEEE-----------------ECC---------------HHHHHHHHTCGGGCCEEEEEECSCHH
T ss_pred             ecchhhHHHHhcCCCeEEe-----------------cch---------------HHHHHHHHHhhcccceEEEecCCcHH
Confidence            1 12455666677777776                 411               1222222211 124667888999999


Q ss_pred             HHHHhcCCCCCCcccHHHHHHHHHHHHHHh--h-C--CeEEEcCCCCHHHHHHHHHHHHH
Q psy16874        158 ALQRRKGFGDERYEQTDFQRKVAENYEKLK--D-N--IWIDIDADKDIDTLGLIVKDIVI  212 (227)
Q Consensus       158 ~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~Id~~~s~~~v~~~I~~~i~  212 (227)
                      ++.+|+.+|+...+ .+..+++..+..++.  . .  ..+++|  .++++++++|.++|.
T Consensus       127 ~l~~RL~~Rg~~~~-~~I~~Rl~~~~~e~~~~~~~~fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         127 DLKKRLEGRGTETE-ESINKRLSAAQAELAYAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             HHHHHHHHHSCSCH-HHHHHHHHHHHHHHHHHTTTCSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchh-HHHHHHHHHHHHHHHhhhhcCCCEEEEC--cCHHHHHHHHHHHHH
Confidence            99999987654332 233344444333222  1 1  344443  379999999988875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=9.3e-11  Score=89.86  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             CCCEEEEeecCHHHHHHhcCCCCCCcccHHHHHHHHH---HHHHHhhCCeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        145 KPDAVLLFKLNEEALQRRKGFGDERYEQTDFQRKVAE---NYEKLKDNIWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       145 ~pd~vi~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      ..|.+|++++|+++..+|+..|+ .........++..   ....... .-++||++++++++..+|.+.+..+++
T Consensus       124 ~~~~iI~V~a~~e~r~~R~~~R~-~~~~~~~~~~~~~Q~~~~~k~~~-aD~vI~N~~~le~l~~~v~~l~~~~l~  196 (208)
T d1vhta_         124 KANRVLVVDVSPETQLKRTMQRD-DVTREHVEQILAAQATREARLAV-ADDVIDNNGAPDAIASDVARLHAHYLQ  196 (208)
T ss_dssp             GCSEEEEEECCHHHHHHHHHHHH-TCCHHHHHHHHHHSCCHHHHHHH-CSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHHHhh-hhhHHHHHHHHHhCCCHHHHHHh-CCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999987652 2332333333333   1111111 347899999999988887777665553

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=3.6e-09  Score=80.17  Aligned_cols=36  Identities=39%  Similarity=0.510  Sum_probs=33.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |.+|+++|.|||||||+++.|++.+++.++++..+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            789999999999999999999999999999987765

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=2e-09  Score=71.99  Aligned_cols=153  Identities=16%  Similarity=0.160  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCCCCCCchHHHHHHHhhcCCCCHHHHHHHHHhhhhhhhhHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPDRTISTGHIIDEYLRKKIELPDQAAHLLFSANRWEREPTLTKLI   89 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   89 (227)
                      +|+++||+.+=|||++..|.+.+...-+.         +..+ +..    .+|.   . ..           ++.. ..+
T Consensus         2 liilegpdccfkstvaaklskelkypiik---------gssf-ela----ksgn---e-kl-----------fehf-nkl   51 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIK---------GSSF-ELA----KSGN---E-KL-----------FEHF-NKL   51 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEE---------CCCH-HHH----HHCH---H-HH-----------HHHH-HHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceec---------Cchh-hhh----hccC---H-HH-----------HHHH-Hhh
Confidence            68999999999999999999999763222         2221 111    1111   0 00           0111 123


Q ss_pred             HcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCC---CChhhhhcccCCCCCCCEEEEeecCHHHHHHhcCCC
Q psy16874         90 EQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEG---MDISWCFQPEKGLPKPDAVLLFKLNEEALQRRKGFG  166 (227)
Q Consensus        90 ~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~R~~~r  166 (227)
                      ...++|++                 |||+++...|...-..   +...-+.-+......-.-++||.++|.++.+|+.-|
T Consensus        52 adednvii-----------------drfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvr  114 (164)
T d2axpa1          52 ADEDNVII-----------------DRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR  114 (164)
T ss_dssp             TTCCSEEE-----------------ESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH
T ss_pred             ccccceee-----------------ehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccc
Confidence            45677888                 9999999888754322   121212111222222346999999999999999877


Q ss_pred             CCCcccHHHHHHHHHHHHHHhhC---CeEEEcCC-CCHHHHHHHHHH
Q psy16874        167 DERYEQTDFQRKVAENYEKLKDN---IWIDIDAD-KDIDTLGLIVKD  209 (227)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~Id~~-~s~~~v~~~I~~  209 (227)
                      ++.|..-.....+.+.|++...+   ..+.-|+. -+.++++..|+=
T Consensus       115 gdeyiegkdidsilelyrevmsnaglhtyswdtgqwssdeiakdiif  161 (164)
T d2axpa1         115 GDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIF  161 (164)
T ss_dssp             TCSSCCSSHHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHhcCCceeeecccCCcchHHhhhheeE
Confidence            77775434455677788887765   44555544 567787776653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.2e-07  Score=68.88  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|+|.||+||||||+++.|.+..+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            46999999999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.67  E-value=4.9e-08  Score=77.57  Aligned_cols=37  Identities=11%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.++|.|+|++||||||+++.|.+.++..++++..+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~   39 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE   39 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEe
Confidence            4668999999999999999999999998888876654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=4.3e-08  Score=71.36  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|+|+|++||||||+++.|.+.+..+|+.+....
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~   37 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   37 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence            47999999999999999999999999999987754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.4e-07  Score=73.48  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHh--CCCCeEEee
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNK--NNIPSQFVN   43 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~--~~~~~~~~~   43 (227)
                      .+.|.+|.|.|++||||||+|+.|.+.|..  .+.++..+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is  117 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT  117 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEe
Confidence            356889999999999999999999999974  356665544

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.40  E-value=1.8e-07  Score=68.20  Aligned_cols=35  Identities=26%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.|+|.+||||||+++.|...|..+|+++..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47899999999999999999999999999998765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.2e-06  Score=64.03  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      +.|.|+|++||||||+++.+++.+...+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~   34 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG   34 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            459999999999999999999999888877654

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=4.1e-05  Score=57.23  Aligned_cols=166  Identities=8%  Similarity=0.042  Sum_probs=82.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC-CCCe-EEeeCCCCCCC---------chHHHHHHHhhcCCCCHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN-NIPS-QFVNFPDRTIS---------TGHIIDEYLRKKIELPDQAAHLLF   74 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~-~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
                      +.++.|+|.||   ||+|+.+.|.+.++.. ...+ ..++.|..+..         ..+.+.....++.-+.-..    +
T Consensus         7 ~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~----~   79 (199)
T d1kjwa2           7 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQ----Y   79 (199)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEE----E
T ss_pred             CCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeee----e
Confidence            34566778886   6999999999987654 3343 33555433221         1233444444432100000    0


Q ss_pred             Hhhhhhh-hhHHHHHHHcCCEEEEecccccccccCCCCCCCCcccchhhhhhhccCCCChhhhhcccCCCCCCCEEEEee
Q psy16874         75 SANRWER-EPTLTKLIEQGITLEIMHSSLENEKNLDQGCTNDRYSFSGVAFSAAKEGMDISWCFQPEKGLPKPDAVLLFK  153 (227)
Q Consensus        75 ~~~~~~~-~~~i~~~~~~~~~vi~~~~~~~~~~~~~~g~i~Dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~vi~L~  153 (227)
                      ....+.. ...+...+..|..+++                 |               .+.+.+..+....+.| ++||+.
T Consensus        80 ~g~~YGt~~~~i~~~~~~gk~~ll-----------------d---------------id~~g~~~lk~~~~~~-i~IfI~  126 (199)
T d1kjwa2          80 NSHLYGTSVQSVREVAEQGKHCIL-----------------D---------------VSANAVRRLQAAHLHP-IAIFIR  126 (199)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEE-----------------C---------------CCTTHHHHHHHTTCCC-EEEEEC
T ss_pred             cCCccceeeeEEEehhcCCCcccc-----------------c---------------ccchHHhhhhhhccce-eEEeec
Confidence            0001111 2466777788888887                 4               1112222232233344 688888


Q ss_pred             cCHHHHHHhcCCCCCCcccHHHHHHHHHHH---HHHhhC-CeEEEcCCCCHHHHHHHHHHHHHHHhh
Q psy16874        154 LNEEALQRRKGFGDERYEQTDFQRKVAENY---EKLKDN-IWIDIDADKDIDTLGLIVKDIVIDTIK  216 (227)
Q Consensus       154 ~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~---~~~~~~-~~~~Id~~~s~~~v~~~I~~~i~~~l~  216 (227)
                      +|.-...+|+.+|..   ..+..+++..+.   ..+... ..+++|  .+.++++++|.++|.+.-.
T Consensus       127 pps~e~l~~l~kr~~---~~~i~~r~~~~~~~e~~~~~~fd~vI~N--ddle~a~~~l~~iI~~~~~  188 (199)
T d1kjwa2         127 PRSLENVLEINKRIT---EEQARKAFDRATKLEQEFTECFSAIVEG--DSFEEIYHKVKRVIEDLSG  188 (199)
T ss_dssp             CSSHHHHHHHCTTSC---HHHHHHHHHHHHHHHHHHGGGCSEEECC--SSHHHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHhhhcccc---HHHHHHHHHHHHHHHHHhhccCCEEEEC--cCHHHHHHHHHHHHHHhcC
Confidence            764444445544321   112222222211   122221 344443  4789999999888875443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=4.1e-06  Score=63.47  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          4 QIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++.+|.+|++.||+||||||.+.+|+.++...+.+|..+.
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            3467889999999999999999999999988898887644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.05  E-value=1.5e-06  Score=63.52  Aligned_cols=27  Identities=41%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      |-|+|+|++||||||+++.++..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            349999999999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.04  E-value=1.1e-06  Score=68.43  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ..|..|++.|||||||||+++.|+..++..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~~   59 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQGN   59 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            457889999999999999999999988653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=9.5e-06  Score=61.15  Aligned_cols=38  Identities=29%  Similarity=0.459  Sum_probs=33.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.+|.+.||+||||||.+.+|+.++...+.++..+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit   41 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA   41 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            46889999999999999999999999988888887644

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.98  E-value=6e-06  Score=62.47  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=30.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.|.+|.+.||+||||||.+.+|+.++...+.++..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   47 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG   47 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            56889999999999999999999999998898887654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.98  E-value=1.2e-06  Score=67.51  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIP   38 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~   38 (227)
                      .+|+|+|.+||||||+|+.|++.+++..++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEc
Confidence            579999999999999999998877654443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=4.3e-06  Score=67.54  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .+...|.|+|+|||||||+.+.|..++...|.++..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   87 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence            457789999999999999999999999999988865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.94  E-value=5.7e-06  Score=66.72  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .+...|.|+|+|||||||+...|.+++...+.++..+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVi   85 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL   85 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeee
Confidence            3567899999999999999999999999899998663

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1e-05  Score=61.03  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.+|.+.||+||||||.+.+|+.++...+.++..+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   44 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA   44 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            56889999999999999999999999988888887654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.89  E-value=1.5e-05  Score=60.12  Aligned_cols=38  Identities=29%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .++.+|++.||+||||||.+.+|+.++...+.++..+.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit   45 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA   45 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            35678999999999999999999999999999987655

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=7.7e-06  Score=64.64  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++|.+|.|.|++||||||++..|.+.|..
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            45889999999999999999999888754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=4.8e-06  Score=63.83  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.++|.||||+||||+++.|+++++..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCC
Confidence            458899999999999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.75  E-value=8.9e-06  Score=62.13  Aligned_cols=33  Identities=36%  Similarity=0.548  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      ++|+|.|++||||||+++.|.+++.. +..+..+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~-~~~~~iv   33 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYV   33 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh-CCeEEEE
Confidence            57999999999999999999988764 3345443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=1.2e-05  Score=61.67  Aligned_cols=27  Identities=26%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++.++|.||||+||||+++.+++.++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~   61 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGV   61 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.65  E-value=1.9e-05  Score=60.13  Aligned_cols=28  Identities=32%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ...++|.||+|+||||+++.+++.+...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~~   72 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFGE   72 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            3458899999999999999999988653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=1.4e-05  Score=61.63  Aligned_cols=27  Identities=26%  Similarity=0.124  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++.++|.||||+||||++..|++.++.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            457999999999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.63  E-value=1.5e-05  Score=61.67  Aligned_cols=28  Identities=32%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ++-|.+.||||+|||++++.|++.++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~   67 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFP   67 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccc
Confidence            4558999999999999999999988653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.61  E-value=8.4e-05  Score=57.15  Aligned_cols=29  Identities=21%  Similarity=0.226  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .+..++|.||||+||||+++.|++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            45679999999999999999999999654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.4e-05  Score=62.23  Aligned_cols=28  Identities=21%  Similarity=0.134  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++-|.+.||||+|||++++.|++.++.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~   71 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV   71 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCC
Confidence            3567899999999999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=1.7e-05  Score=61.44  Aligned_cols=28  Identities=18%  Similarity=0.097  Sum_probs=24.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++-|++.||||+|||++++.|++.++.
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~   68 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARV   68 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCC
Confidence            3556899999999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.55  E-value=1.7e-05  Score=63.51  Aligned_cols=28  Identities=29%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.-|.+.||||+|||++|+.|++.++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~   76 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAP   76 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccc
Confidence            4557889999999999999999988653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.46  E-value=2.6e-05  Score=63.73  Aligned_cols=31  Identities=35%  Similarity=0.532  Sum_probs=27.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          5 IPRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .++++.++|.||||+||||++..|++.++..
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3567789999999999999999999998763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=4.2e-05  Score=58.45  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ++|-+++|.||+||||||+++.++--+
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            567899999999999999999887644

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=4.7e-05  Score=57.58  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNN   36 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~   36 (227)
                      .++|.||||+||||++..|++.+....
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~~   64 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGRS   64 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhccc
Confidence            377999999999999999999987643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=3.8e-05  Score=59.16  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-.|+|+|++||||||+++.|...+.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4577899999999999999998887554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.37  E-value=5.3e-05  Score=58.33  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +++-+++|.|++||||||+++.|..-+..
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            56889999999999999999999876543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.37  E-value=3.8e-05  Score=59.53  Aligned_cols=25  Identities=32%  Similarity=0.141  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +++|.||||+||||+++.+++.+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4667899999999999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=5e-05  Score=58.89  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++-+++|+|++||||||+++.|...+.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            4677999999999999999988876443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=4.7e-05  Score=58.11  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+.+.|+--+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            467799999999999999998777643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.4e-05  Score=58.62  Aligned_cols=28  Identities=29%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|+|++||||||+++.|...+.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            4678999999999999999998876543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=8.3e-05  Score=53.27  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=26.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +++.+|.+.|.-||||||+++.+++.++..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            457789999999999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=5.8e-05  Score=57.26  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..++|.||+|+||||+++.+++.+.
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHc
Confidence            3478999999999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.33  E-value=0.00091  Score=55.01  Aligned_cols=39  Identities=26%  Similarity=0.179  Sum_probs=31.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFPD   46 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~   46 (227)
                      .-+|+|+||.||||||.+..+-..++..+-++..+..|.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi  196 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  196 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc
Confidence            457999999999999999999998876566666666553

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=6.5e-05  Score=57.52  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +..++|.||+|+||||++..+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l~~~   60 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESIFGP   60 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhcCc
Confidence            4457899999999999999999987443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.3e-05  Score=58.17  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+++.|+--+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            467899999999999999998887644

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.30  E-value=0.00014  Score=55.34  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++.++.|.|+|||||||+|..++......+..+.++.
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            35779999999999999999999999888788887755

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.28  E-value=7.8e-05  Score=57.16  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.||+||||||+.+.|...+.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4677999999999999999998887553

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=9e-05  Score=55.97  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      .+.|.||+|+||||++..+++.+....+
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~   64 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGKNY   64 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcCCC
Confidence            3679999999999999999999875443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=4.5e-05  Score=59.55  Aligned_cols=29  Identities=28%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .++-|.+.||||+|||++++.|+..++..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~   68 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQAN   68 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCc
Confidence            45568999999999999999999988653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=7.9e-05  Score=58.63  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+++.|...+.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            5688999999999999999999876554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.25  E-value=7.1e-05  Score=57.43  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-+++|.|++||||||+++.|+-.+.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            3577899999999999999999886443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=8.7e-05  Score=57.59  Aligned_cols=28  Identities=21%  Similarity=0.169  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .++-|.+.||||+|||++++.++..++.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCC
Confidence            3456899999999999999999998755

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.24  E-value=6.3e-05  Score=57.32  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++-+++|.||+||||||+.+.|+-.+.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4677999999999999999999887543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=5.2e-05  Score=56.69  Aligned_cols=28  Identities=36%  Similarity=0.590  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.|+.||||||+.+.|+..+.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            4677899999999999999998876543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.18  E-value=0.00016  Score=51.28  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++-.-|+|+|.+||||||+.+.+..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhC
Confidence            4566799999999999999998865

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00026  Score=55.29  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=34.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.|++|.+.|.-|+||||++..|+..+...|.+|..+.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            45889999999999999999999999999999986644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.15  E-value=6.3e-05  Score=58.34  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++-+++|+|++||||||+++.|...+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            467899999999999999998777644

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0003  Score=52.29  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCD-RSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~-GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.|.|+|.. |+||||++-.|+..|...|++|..++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            468999995 99999999999999999999997765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.12  E-value=0.00015  Score=51.04  Aligned_cols=22  Identities=41%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      -|+|.|.+||||||++++|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.12  E-value=0.00013  Score=55.87  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++|.||.||||||+.+.|+-.+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            678999999999999999987554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=53.85  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +++.++.|.|+|||||||+|-.++.+.-
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3577999999999999999999887543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.11  E-value=0.0006  Score=51.16  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|.|++|||||.++..++..+...+..+.++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~   71 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   71 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEec
Confidence            789999999999999999999998888876654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.11  E-value=7.4e-05  Score=57.37  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-+++|.|++||||||+++.|+-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            467899999999999999999988754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00028  Score=54.85  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +..++|+++|.-|+||||++-.|+..+...|.+|..+..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~   56 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS   56 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            567899999999999999999999999999999876553

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00013  Score=56.60  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .+|-++.|.|++||||||+++.|.-.+
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            467899999999999999999887543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00044  Score=46.83  Aligned_cols=35  Identities=11%  Similarity=0.031  Sum_probs=28.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh-CCCCeE
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK-NNIPSQ   40 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~-~~~~~~   40 (227)
                      +.|..|+++|.+||||||++..|-..|.. .|-...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~v   39 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYY   39 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCE
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcce
Confidence            45889999999999999999999888866 454433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.01  E-value=0.00016  Score=55.53  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +.+|+|.|++|+||||+++.+++.++..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            5678999999999999999998887653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.01  E-value=0.00014  Score=55.87  Aligned_cols=28  Identities=29%  Similarity=0.595  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ++|-+++|.||.||||||+.+.|.-.+.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4678999999999999999988876543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.00  E-value=0.00021  Score=52.52  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +.|+|.|.|||||||+.+.|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3599999999999999999973

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00026  Score=50.19  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |.-|+|.|.+||||||+.+.|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999998874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00022  Score=54.66  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.||.||||||+.+.|+..+.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999988877543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00031  Score=55.99  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             CCce-EEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          6 PRGA-FIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         6 ~~~~-~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .+|. .+.|.||+|+|||.+++.|++.++..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~   79 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIE   79 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCC
Confidence            3444 68899999999999999999998643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.92  E-value=0.00031  Score=50.50  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +-+-|+|+|.+||||||++++|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            446699999999999999988865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00016  Score=55.11  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++|-++.|.|+.||||||+.+.|+-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4577999999999999999988876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.90  E-value=0.00025  Score=51.10  Aligned_cols=25  Identities=40%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++..-|+|.|.+||||||+.+.|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3455699999999999999988865

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00028  Score=49.62  Aligned_cols=20  Identities=40%  Similarity=0.595  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |++.|.+||||||+.+.|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00032  Score=51.20  Aligned_cols=30  Identities=23%  Similarity=0.055  Sum_probs=22.5

Q ss_pred             CCCCCCCce-EEEEEcCCCCcHHHHHHHHHH
Q psy16874          1 MASQIPRGA-FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         1 m~~~~~~~~-~I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+..+.+.. -|+|.|.+|+||||+..++..
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhh
Confidence            665422222 399999999999999988765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.88  E-value=0.00042  Score=49.82  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++..-|+|.|.+||||||+++.|..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            4456799999999999999987743

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.00016  Score=60.42  Aligned_cols=32  Identities=28%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCe
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPS   39 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~   39 (227)
                      +..|+++||+|||||-+++.||+.++-..+.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            55799999999999999999999886544333

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.86  E-value=0.00022  Score=55.19  Aligned_cols=28  Identities=25%  Similarity=0.452  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+|-++.|.||.||||||+++.|.-.+.
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            4577999999999999999988877543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00046  Score=51.50  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      |.-++|.||+|+||||++..+++.+-.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            556999999999999999999998854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.83  E-value=0.00034  Score=53.14  Aligned_cols=27  Identities=30%  Similarity=0.154  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +.+.++.|.|+|||||||++-.++.+.
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            457899999999999999998887755

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.00032  Score=50.40  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999874

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00023  Score=53.79  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +++.++.|.|+|||||||++-.++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            45789999999999999999877653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.81  E-value=0.00039  Score=49.49  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +-|+|.|.+||||||+.+.|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4589999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.80  E-value=0.00029  Score=51.05  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.|||||||+.+.|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999964

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00039  Score=51.36  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .|+|.|.|||||||+.+.|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0006  Score=51.91  Aligned_cols=28  Identities=32%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      |..++|.||+|+||||++..+++.+...
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            5568899999999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00055  Score=49.66  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +.+.-|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3467799999999999999988864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.77  E-value=0.00099  Score=51.51  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=31.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH-hCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN-KNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~-~~~~~~~~~~   43 (227)
                      +|-+++|.|+||+||||++..++.++. ..+.+|.++.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            467999999999999999999998765 4688887755

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00039  Score=52.56  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +++..+|.|++|+||||+.+.|..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcc
Confidence            356789999999999999988853

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00059  Score=51.71  Aligned_cols=27  Identities=26%  Similarity=0.080  Sum_probs=23.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +++.++.|.|+|||||||+|-.++...
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999998888643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00091  Score=49.36  Aligned_cols=29  Identities=21%  Similarity=0.139  Sum_probs=24.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ....+++.|+||+|||++++.|++.+...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~   70 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIING   70 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhC
Confidence            34468999999999999999999988753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0005  Score=50.92  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            599999999999999999876

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0006  Score=51.48  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      ++++|+|.-||||||+.+.|.+.  ..+.++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~--~~~~riaV   34 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAV   34 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS--CCCCCEEE
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEE
Confidence            57899999999999999888774  33555544

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.00061  Score=49.18  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..+|+|.|.+||||||+++.|..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            44799999999999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00057  Score=49.15  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+|+|.|.+|+||||+.+.|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999975

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.00037  Score=50.64  Aligned_cols=20  Identities=20%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.|+|||||+.+.|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999998853

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0013  Score=50.95  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .+.++-|.|+|||||||+|-.++......+..+.++..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            46799999999999999999999998888888888664

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.00072  Score=53.83  Aligned_cols=29  Identities=34%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             CCce-EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGA-FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~-~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .+|. .+.+.||+|+|||.+++.|++.+-.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~   79 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFD   79 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcC
Confidence            4454 6889999999999999999999843

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.59  E-value=0.0015  Score=50.23  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      +.|+|.|.-|+||||++-.|+..|-..|.+|..++.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~   37 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEec
Confidence            568999999999999999999999999999977554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00092  Score=47.87  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++-.-|+|.|.+||||||+++.+..
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4445699999999999999998865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.00064  Score=48.67  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.|..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0013  Score=51.02  Aligned_cols=29  Identities=24%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      ....+++.|+||+|||++++.|++.+...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHhC
Confidence            34568899999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00082  Score=47.79  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|++.|.+|+||||+++.+..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3489999999999999998875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.54  E-value=0.0011  Score=49.46  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH-HHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY-LNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~-l~~~~~~~~~~~   43 (227)
                      ++|.++.|.|+||+||||++-.++.. ....+..+.++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s   62 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT   62 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc
Confidence            45789999999999999999766543 333344565544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0008  Score=47.96  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++..-|+|.|.+|+||||+++.+..
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHh
Confidence            3456799999999999999988864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0005  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.|++||||+.+.|..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999988854

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.49  E-value=0.00092  Score=53.23  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++++.||||+|||.+++.|+..++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcC
Confidence            3566899999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.49  E-value=0.00075  Score=48.90  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +-..|+|.|.++|||||+.+.|.+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            345799999999999999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0011  Score=47.59  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|+|.|.+|+||||++..+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            45699999999999999988775

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.48  E-value=0.00074  Score=50.79  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.+.++.|.|+||+||||++-.++.+.-.
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999876643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.48  E-value=0.00093  Score=52.08  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      ...+|+|.|+.|.||||+|+.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999987653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.47  E-value=0.00082  Score=47.78  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|++||||||+...|..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999988865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.47  E-value=0.0011  Score=48.07  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++=|.|.|++|+||||++-.|.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            566899999999999999777763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.43  E-value=0.00037  Score=55.79  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .-+.|+|+||+||||+++.++..|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            458999999999999999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00092  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            389999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.001  Score=48.16  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++..-|+|.|.+|+||||+++.+..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            4556799999999999999988875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00089  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00094  Score=47.94  Aligned_cols=21  Identities=19%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.00059  Score=49.34  Aligned_cols=20  Identities=15%  Similarity=0.308  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.+||||||+.+.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999988853

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.001  Score=47.80  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++++..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.34  E-value=0.0008  Score=48.29  Aligned_cols=24  Identities=38%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      ++..-|+++|.+||||||+..++.
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHh
Confidence            345669999999999999998775

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.34  E-value=0.0011  Score=51.13  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..+..|+|.|.+||||||+++.|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3467799999999999999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=47.64  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0012  Score=47.38  Aligned_cols=20  Identities=20%  Similarity=0.406  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.+||||||+++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999988875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.30  E-value=0.00078  Score=53.80  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      ..|+|+|++||||||+.+.|...++. ...+..+..+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd~  202 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDT  202 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESS
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc-ccceeeccch
Confidence            45899999999999999999887654 4455555443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0012  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|++.|.+||||||+++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0011  Score=47.08  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|++.|.+|+||||+++.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++.|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            388999999999999987763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.29  E-value=0.0012  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++=|.|.|++|+||||++-.|.+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            55689999999999999977765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0017  Score=46.13  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|.|.+|+||||+++++..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.0013  Score=47.67  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|+|.+||||||+++.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0013  Score=46.76  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.22  E-value=0.0037  Score=46.58  Aligned_cols=35  Identities=26%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++|+|. |-.|+||||++..|+..+...|.+|..++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            466666 88999999999999999999999997755

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.22  E-value=0.0011  Score=47.82  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLV   29 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~   29 (227)
                      ++-.-|++.|.+||||||+.+.|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            345669999999999999997763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=46.62  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||++.++..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0014  Score=46.67  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.|..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=46.67  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||++..+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.18  E-value=0.0005  Score=52.19  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++...+|.|.+|+||||+.+.|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            3566789999999999999988654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0014  Score=48.01  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            389999999999999988875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=46.70  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++++..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=46.35  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.+|+||||+++++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.17  E-value=0.0041  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             ceEEEEE-cCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFE-GCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +++|+|. +-.|+||||++-.|+..|...|.+|..++
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            5678777 77999999999999999999999987765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.17  E-value=0.00094  Score=54.23  Aligned_cols=28  Identities=32%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +..|.++||+|+|||-+++.|++.++..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~   95 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIP   95 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccc
Confidence            4469999999999999999999987543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0016  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|.|.+|+||||+.++|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.14  E-value=0.0019  Score=48.65  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.++|+|.|.+.|||||+++.|...-.
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcc
Confidence            345699999999999999999977644

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.13  E-value=0.0018  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      ++=|.|.|++|+||||++-.|.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            566899999999999999776664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999988765

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.10  E-value=0.0044  Score=48.14  Aligned_cols=37  Identities=22%  Similarity=0.144  Sum_probs=32.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeC
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNF   44 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~   44 (227)
                      .+.|+|.|--|+||||++-.|+..|...|.+|..++.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~   38 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGC   38 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            3468889999999999999999999999999866553

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0017  Score=46.66  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+++|.+|+||||+.+.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998775

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0017  Score=46.33  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~   30 (227)
                      |+|.|.+|+||||+++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            88999999999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.08  E-value=0.0036  Score=48.45  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      +.+.++-|.|++||||||+|-.++......+..|.+++..
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            3577999999999999999999999888888888887753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0021  Score=51.99  Aligned_cols=26  Identities=35%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .++.+|.|+||+||||++..+...+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHH
Confidence            46899999999999999876655553

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.00046  Score=48.72  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      -|+|.|.+||||||+.+.|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.06  E-value=0.0019  Score=46.11  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||+++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0019  Score=46.01  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|++.|.+|+||||++..+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999988876

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.01  E-value=0.0084  Score=41.62  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=33.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ..|.+=+|+||+.|||||-.=...+++...+.++..+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            46888899999999999999888888988898887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0027  Score=45.06  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|+|.+|+||||++.++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3489999999999999998875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0089  Score=46.13  Aligned_cols=40  Identities=33%  Similarity=0.376  Sum_probs=33.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      +.+.+.-|.|++||||||+|-.++......+..+.++...
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            4578999999999999999988888888888888776643

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0076  Score=41.41  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +|.+-+|+||+.|||||-.=.....+...+-.+..+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4778899999999999988887788888888776655

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0025  Score=45.69  Aligned_cols=21  Identities=24%  Similarity=0.108  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||++..+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999988776

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0023  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|.|.+|+||||++..+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999988765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0023  Score=45.79  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|+|.|.+|+||||+++.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999988764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.86  E-value=0.0022  Score=47.37  Aligned_cols=29  Identities=21%  Similarity=0.487  Sum_probs=25.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++-..|+|.||+++|||+++..|.+-++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            45568999999999999999999998854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0044  Score=45.85  Aligned_cols=26  Identities=23%  Similarity=0.066  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..|++.|-+++|||||++.|....+.
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhh
Confidence            56999999999999999999876654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.75  E-value=0.004  Score=48.81  Aligned_cols=24  Identities=17%  Similarity=0.266  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHH-HHHHHHHh
Q psy16874         11 IVFEGCDRSGKTTQAK-KLVDYLNK   34 (227)
Q Consensus        11 I~i~G~~GsGKST~~~-~L~~~l~~   34 (227)
                      +.|.|++||||||++- ++++.+..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~   51 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAE   51 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHc
Confidence            5677999999997653 44444443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0017  Score=46.39  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|++.|.+|+||||+++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999987765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0034  Score=45.67  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..-|++.|.+|+||||++.++..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            34599999999999999988765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.0016  Score=46.63  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=9.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+||||||+++.|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999987764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0038  Score=47.87  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+.+|.|++|+||||++-.|+..+.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            56788999999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0037  Score=45.43  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKL   28 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L   28 (227)
                      .-|++.|.+||||||+..++
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.66  E-value=0.0031  Score=49.00  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHH-HHHHHHHH
Q psy16874         11 IVFEGCDRSGKTTQA-KKLVDYLN   33 (227)
Q Consensus        11 I~i~G~~GsGKST~~-~~L~~~l~   33 (227)
                      +.|.|+|||||||++ .+++..+.
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~   40 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIR   40 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHH
Confidence            457799999999764 44555443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.0051  Score=45.31  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=29.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhC---CCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKN---NIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~---~~~~~~~~   43 (227)
                      ..+.-+.|.|++|+||||++..|++.+...   |-++..+.
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~   53 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID   53 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe
Confidence            457789999999999999999999987542   44454444

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.0039  Score=44.39  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|++.|.+||||||++..+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488899999999999988765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0045  Score=44.55  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|.|.+|+||||++..+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987766

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.49  E-value=0.0038  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|++.|.+||||||+...+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3489999999999999988854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0033  Score=51.55  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+..|+|.|.+||||||+.+.|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999863

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.0054  Score=49.97  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      .+++.|+||+|||++++.|+..+-..
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~~~   70 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIVKG   70 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHHhC
Confidence            46778999999999999999987654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.34  E-value=0.006  Score=41.25  Aligned_cols=38  Identities=13%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             CCceEEEEEcCCCCcHHHHH-HHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQA-KKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~-~~L~~~l~~~~~~~~~~~   43 (227)
                      .++...+|.+++|||||.++ ..+.+.....+..+..+.
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            45788999999999999776 355566666666665544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0083  Score=49.08  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.+.|.|++|||||+.+..+...+-..+.++..++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            45899999999999999877776666677765544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0056  Score=43.95  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|++.|.+|+||||++..+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4599999999999999987765

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.24  E-value=0.019  Score=39.59  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=29.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |.+=+++||+.|||||-.=...+++...+-++..+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ik   37 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   37 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            567789999999999977777777888888886644

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.15  E-value=0.0058  Score=47.18  Aligned_cols=29  Identities=21%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++-..+++.|++++||||+++.|.+.++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            44567999999999999999999998754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.0064  Score=43.89  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .-|++.|..||||||+..++...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.08  E-value=0.0076  Score=47.12  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      +.++-|.|.|.|.|||||+-+.|...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            35677999999999999999999963

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0017  Score=46.93  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      +.+|.|+.||||||+...|.-.|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            457889999999999999998774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.93  E-value=0.0095  Score=43.79  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CCc-eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          6 PRG-AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         6 ~~~-~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+| ..|+|.|...+||||++..|..
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            355 4699999999999999999863

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.92  E-value=0.015  Score=42.66  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ..|+|.|-..+||||+++.|...+..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~   29 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAE   29 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            46999999999999999999876544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.0082  Score=43.08  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .-|++.|..|+||||++.++..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            3489999999999999998865

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.011  Score=45.82  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .+-+.|+|.|..||||||+++.|...-+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999976544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.78  E-value=0.01  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+..|.|.|.|.+||||+++.|..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CceEEEEEecCccchhhhhhhhhc
Confidence            456799999999999999999986

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.76  E-value=0.0087  Score=46.16  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +.|+|.|..|+||||+++.|-.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            5699999999999999998853

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.59  E-value=0.012  Score=42.85  Aligned_cols=22  Identities=36%  Similarity=0.305  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ..|+|.|-..+|||||++.|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            4589999999999999999953

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.56  E-value=0.017  Score=43.89  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |+|.|.+|+||+++|+.|...-.........+.
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~   58 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALN   58 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccch
Confidence            788899999999999999876555554544443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.52  E-value=0.012  Score=45.41  Aligned_cols=23  Identities=26%  Similarity=0.208  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      ++-|.|.|.|.|||||+-+.|+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            45699999999999999999996

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.34  E-value=0.0092  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.133  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+-+|+|+.||||||+.+.|.-.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46789999999999999888543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.014  Score=47.10  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      +.+-+|+|+.||||||+.+.|.=.|
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4467899999999999999986444

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.017  Score=43.51  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .++.+|+||.+|||||..+.++-.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            467899999999999999998863

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.07  E-value=0.011  Score=40.27  Aligned_cols=34  Identities=15%  Similarity=0.071  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .....+|.+|.|||||+++-.+..   ..+..+..+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~---~~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA---AQGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH---TTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH---HcCCcEEEEc
Confidence            456789999999999998755443   3455554443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.79  E-value=0.018  Score=45.20  Aligned_cols=22  Identities=23%  Similarity=-0.002  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      -|.|.|.|.|||||+-+.|...
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.017  Score=44.72  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDY   31 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~   31 (227)
                      .+|+|+|+.++||||+++.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            37999999999999999998753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.036  Score=42.95  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=26.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNI   37 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~   37 (227)
                      -+|--+.|.|++|+||||++..+++.....+-
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~   72 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP   72 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHHHHCT
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCC
Confidence            45667999999999999999999998765443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.037  Score=41.69  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..|+|+|-.++||||++..|.-..+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999987654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.95  E-value=0.033  Score=41.60  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      .+++|+||..+||||..+.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999998775

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.88  E-value=0.027  Score=40.58  Aligned_cols=21  Identities=38%  Similarity=0.656  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +|.|+|+..||||..|+.|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            479999999999999988763

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.79  E-value=0.079  Score=33.82  Aligned_cols=39  Identities=18%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          1 MASQIPRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         1 m~~~~~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      |...+.+.+-|.|.|.-|+|-|.+|..|.+.    |+.|.-.+
T Consensus         1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~----G~~VsGSD   39 (96)
T d1p3da1           1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNE----GYQISGSD   39 (96)
T ss_dssp             CCCCCTTCCEEEEETTTSTTHHHHHHHHHHH----TCEEEEEE
T ss_pred             CCccchhCCEEEEEEECHHHHHHHHHHHHhC----CCEEEEEe
Confidence            4455667788999999999999998776664    76665444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.045  Score=42.79  Aligned_cols=19  Identities=42%  Similarity=0.618  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQA   25 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~   25 (227)
                      ++-+-+|.|.+|+|||||+
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4567789999999999987

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.72  E-value=0.051  Score=42.13  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~   30 (227)
                      +-|+|+|-.+|||||+++.|..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            3588999999999999999874

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.71  E-value=0.049  Score=42.76  Aligned_cols=19  Identities=42%  Similarity=0.601  Sum_probs=16.5

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQA   25 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~   25 (227)
                      .+-+-+|.|.+|+||||++
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4556789999999999998

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.71  E-value=0.055  Score=39.18  Aligned_cols=35  Identities=20%  Similarity=0.106  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      +.-+++.+|+|||||+.+....-..-..+-.+..+
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l   74 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYV   74 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhhccCcceee
Confidence            44578999999999988754333222234355443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.52  E-value=0.072  Score=38.24  Aligned_cols=32  Identities=19%  Similarity=0.080  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH-HhCCCCeEEe
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYL-NKNNIPSQFV   42 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l-~~~~~~~~~~   42 (227)
                      .++++|.|||||.++-.++... ...+-.+..+
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            5688999999999877776543 3345445443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.48  E-value=0.078  Score=39.25  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874          9 AFIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus         9 ~~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      ..|+|.|--++||||++..|....+
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcC
Confidence            4599999999999999998865443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.46  E-value=0.07  Score=39.60  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYLN   33 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l~   33 (227)
                      .|++.|-..+||||++..|....+
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999965543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.18  E-value=0.07  Score=39.66  Aligned_cols=36  Identities=11%  Similarity=0.008  Sum_probs=26.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      ++-+++.+|.|||||+.+-..+..+-..+-.+..+-
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            455888999999999988777766656666665544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.18  E-value=0.056  Score=42.93  Aligned_cols=25  Identities=20%  Similarity=0.088  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      =+.|+|.|..++||||+++.|-...
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHC
Confidence            3579999999999999999997544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.14  E-value=0.056  Score=40.78  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVDYL   32 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~~l   32 (227)
                      .|+|.|-.++||||++..|....
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~   48 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLT   48 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHT
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHc
Confidence            49999999999999999886543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.1  Score=39.07  Aligned_cols=38  Identities=18%  Similarity=0.011  Sum_probs=31.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.++..+++|..|||||=++-..+...-..|..+..+-
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~  111 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV  111 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEc
Confidence            56888999999999999999888877767787776644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.05  E-value=0.048  Score=42.73  Aligned_cols=19  Identities=42%  Similarity=0.578  Sum_probs=16.6

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q psy16874          7 RGAFIVFEGCDRSGKTTQA   25 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~   25 (227)
                      .+-+-+|.|.+|+||||++
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            3567899999999999987

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=90.74  E-value=0.19  Score=41.78  Aligned_cols=45  Identities=24%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             CCCceEEEEEc----CCCCcHHHHHHHHHHHHHhCCCCeEE-eeCCCCCC
Q psy16874          5 IPRGAFIVFEG----CDRSGKTTQAKKLVDYLNKNNIPSQF-VNFPDRTI   49 (227)
Q Consensus         5 ~~~~~~I~i~G----~~GsGKST~~~~L~~~l~~~~~~~~~-~~~~~~~~   49 (227)
                      .+.+++|++++    |-|-||||.+=-|++.|+..|.++.. +|+|.-++
T Consensus        48 ~~~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~lRePSlGP   97 (549)
T d1eg7a_          48 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGP   97 (549)
T ss_dssp             SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCCCSTH
T ss_pred             CCCceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEEEecCCCCC
Confidence            35789999999    56999999999999999999999866 99886543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.51  E-value=0.068  Score=41.17  Aligned_cols=21  Identities=24%  Similarity=0.378  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q psy16874         10 FIVFEGCDRSGKTTQAKKLVD   30 (227)
Q Consensus        10 ~I~i~G~~GsGKST~~~~L~~   30 (227)
                      -|+|+|--.|||||+++.|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHhC
Confidence            378999999999999999964

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.46  E-value=0.084  Score=40.37  Aligned_cols=36  Identities=8%  Similarity=0.206  Sum_probs=24.0

Q ss_pred             CCceEEEEEcCCCCcHHHH-H-HHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQ-A-KKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~-~-~~L~~~l~~~~~~~~~~   42 (227)
                      .+++.+++.+++|||||+. . ..+...+. .+..+..+
T Consensus         7 ~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi   44 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLIL   44 (305)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEE
T ss_pred             hcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEE
Confidence            4678899999999999963 3 44444443 35555544

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.23  Score=36.24  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEe
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFV   42 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~   42 (227)
                      .+.++|.|+|.-  ||||....|++-|...|.++..+
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~   37 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVM   37 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEE
Confidence            346788899876  99999999999999999888654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.50  E-value=0.25  Score=37.78  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhC
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKN   35 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~   35 (227)
                      +|--+.|.|++|+||||++..++......
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~~~~   95 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNVAKA   95 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHTTT
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence            45569999999999999999998876443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.27  E-value=0.2  Score=43.40  Aligned_cols=27  Identities=26%  Similarity=0.521  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .-.|+|.|-+|||||+-++.+-++|-.
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL~~  112 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFLTF  112 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            446999999999999999999998854

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.05  E-value=0.21  Score=43.49  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .-.|+|.|-+|||||+-++.+-++|-.
T Consensus        91 ~Q~IiisGeSGaGKTe~~k~il~yL~~  117 (710)
T d1br2a2          91 DQSILCTGESGAGKTENTKKVIQYLAV  117 (710)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999998854

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.88  E-value=0.17  Score=44.11  Aligned_cols=27  Identities=30%  Similarity=0.549  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .-.|+|.|-+|||||.-++.+-++|-.
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999988854

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.56  E-value=0.17  Score=44.61  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      .-.|+|.|-+|||||+-++.+-++|-.
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            446999999999999999999999865

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.47  E-value=0.42  Score=36.62  Aligned_cols=38  Identities=21%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEeeCC
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVNFP   45 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   45 (227)
                      .+-++|.|+|..  ||||.+..|+.-|...|+.|..+..|
T Consensus        37 ~~lkvI~VTGTN--GKtST~~~i~~IL~~~G~kvG~~tSP   74 (296)
T d2gc6a2          37 QQGRYIHVTGTN--GKGSAANAIAHVLEASGLTVGLYTAP   74 (296)
T ss_dssp             GSSCEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             hhCCEEEEeccC--cHHHHHHHHHHHHHhcCCceeeeecc
Confidence            345689999875  79999999999999999999887655

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.44  E-value=0.17  Score=38.56  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=31.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          6 PRGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         6 ~~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.+|.-.+.|..|||||=++-..+...-..|..+..+-
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~  139 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV  139 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred             cCcceeeeeccccccccHHHHHHHHHHHhcccceeEEe
Confidence            56788899999999999999888887767788877754

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=86.64  E-value=0.28  Score=42.80  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=24.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      ++-.|+|.|-+|||||.-++.+-++|..
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l~~  120 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYFAT  120 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3557999999999999999999998864

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.62  Score=33.10  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      +.++|.|+|.  .||||....|+.-|...|..+....
T Consensus        10 ~~~vI~VTGT--~GKTTt~~~l~~iL~~~g~~~~~~~   44 (204)
T d2jfga3          10 QAPIVAITGS--NGKSTVTTLVGEMAKAAGVNVGVGG   44 (204)
T ss_dssp             CSCEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECC--CCHHHHHHHHHHHHHhcCCCcccCC
Confidence            4678888887  4899999999999999998886644

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.30  E-value=0.35  Score=42.56  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHh
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNK   34 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~   34 (227)
                      +.-.|+|.|-+|||||.-++.+-++|-.
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~~  147 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLAK  147 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3457999999999999999999998864

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.09  E-value=0.33  Score=35.09  Aligned_cols=30  Identities=27%  Similarity=0.166  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhCCCCeEEee
Q psy16874         11 IVFEGCDRSGKTTQAKKLVDYLNKNNIPSQFVN   43 (227)
Q Consensus        11 I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   43 (227)
                      .+|.+++|+|||-++-.+...++   -++..+.
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~---~~~Liv~  117 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELS---TPTLIVV  117 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSC---SCEEEEE
T ss_pred             cEEEeCCCCCceehHHhHHHHhc---CceeEEE
Confidence            45778999999999877776653   3444443

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=81.61  E-value=0.79  Score=32.54  Aligned_cols=32  Identities=16%  Similarity=0.190  Sum_probs=26.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          8 GAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         8 ~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      .++|.|+|.-  ||||.+.+|++-|...|..+..
T Consensus         2 ~kvI~VTGTn--GKTTt~~mi~~iL~~~g~~~~~   33 (214)
T d1gg4a4           2 ARVVALTGSS--GKTSVKEMTAAILSQCGNTLYT   33 (214)
T ss_dssp             CEEEEEECSS--CHHHHHHHHHHHHTTTSCEEEC
T ss_pred             CCEEEEeCCC--cHHHHHHHHHHHHHhCCCCEEE
Confidence            4688888874  7999999999999988876543

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.55  E-value=1.1  Score=31.89  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=27.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHHhCCCCeEE
Q psy16874          7 RGAFIVFEGCDRSGKTTQAKKLVDYLNKNNIPSQF   41 (227)
Q Consensus         7 ~~~~I~i~G~~GsGKST~~~~L~~~l~~~~~~~~~   41 (227)
                      ++++|+|+|.  .||||.+..|+.-|...+.++..
T Consensus        13 ~~~~iAITGT--nGKTTt~~~l~~iL~~~g~~~~~   45 (207)
T d1j6ua3          13 KKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTV   45 (207)
T ss_dssp             CCCEEEEECS--SSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCEEEEECC--CCHHHHHHHHHHHHHhCCCCCeE
Confidence            4678999996  58999999999999988877543