Psyllid ID: psy1690

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
cccccccccccccEEccEEEEEccccccEEEEccccccEEEEEEccccccccccccccEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHc
ccccccccccccEEcccEEEEEccccccEEEEEcHHHcEEEEEEEccccccEccccccEEEEEcccccEEEEEcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccEEEEcccccccccccccccHHHHHcHHHHccccccccHHEEcccccccccccHHcEEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcc
vqrvpkteksgrlhtSTVSvavlpqpkdievhldekdlkvetkratgaggqhvnttdsavrmthiptgisvesqedRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTiihrtespiiafrepcttlpsscpavhleekdlkvetkratgaggqhvnttdsadritdhriqRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
vqrvpkteksgrlhtstvsvavlpqpkdieVHLDEKDLKvetkratgaggqhvnttdsavrmTHIPTgisvesqedrsQIKNRANALAKLKRLIYEiqfeeqenrwvvrlvtkrsartiihrtespiiafrepcTTLPSSCPAVHLEEKDLKVEtkratgaggqhvnttdsadritdhRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
************************************************************************************NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHL***************************RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRID****
VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVE*************ALAKLKRLIY****************************ESPIIAFREPCTTLPSSCPAVHLEEKDLKVE*K****AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL*
*************HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGIS*********IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
***********RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHL**************AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRID****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNxxxxxxxxxxxxxxxxxxxxxNRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q9UGC7380 Peptide chain release fac yes N/A 0.756 0.434 0.387 5e-36
Q4V7E5373 Peptide chain release fac yes N/A 0.793 0.463 0.385 9e-36
Q2KI15380 Peptide chain release fac yes N/A 0.752 0.431 0.390 1e-35
Q8BJU9373 Peptide chain release fac yes N/A 0.793 0.463 0.380 6e-35
B1GZI5356 Peptide chain release fac yes N/A 0.770 0.471 0.376 3e-32
Q8R5W0365 Peptide chain release fac yes N/A 0.729 0.435 0.427 1e-31
B0S2B6355 Peptide chain release fac yes N/A 0.747 0.459 0.373 2e-31
B9DMD1358 Peptide chain release fac yes N/A 0.481 0.293 0.575 2e-30
Q1RJT5357 Peptide chain release fac yes N/A 0.440 0.268 0.635 2e-30
A8GXI1357 Peptide chain release fac yes N/A 0.440 0.268 0.635 2e-30
>sp|Q9UGC7|RF1ML_HUMAN Peptide chain release factor 1-like, mitochondrial OS=Homo sapiens GN=MTRF1L PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
           VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261

Query: 61  RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
           R+ H+PTG+  E Q++RSQ+KN+  A+ KL+  +Y +  EE+ N+       +++AR I 
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 313

Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
                                                  G+ G  + + T +   +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336

Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
           HRI +T++++  FM G  +L EL+  ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
Mitochondrial peptide chain release factor that directs the termination of translation in response to the peptide chain termination codons UAA and UAG.
Homo sapiens (taxid: 9606)
>sp|Q4V7E5|RF1ML_RAT Peptide chain release factor 1-like, mitochondrial OS=Rattus norvegicus GN=Mtrf1l PE=2 SV=1 Back     alignment and function description
>sp|Q2KI15|RF1ML_BOVIN Peptide chain release factor 1-like, mitochondrial OS=Bos taurus GN=MTRF1L PE=2 SV=1 Back     alignment and function description
>sp|Q8BJU9|RF1ML_MOUSE Peptide chain release factor 1-like, mitochondrial OS=Mus musculus GN=Mtrf1l PE=2 SV=1 Back     alignment and function description
>sp|B1GZI5|RF1_UNCTG Peptide chain release factor 1 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q8R5W0|RF1_FUSNN Peptide chain release factor 1 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B0S2B6|RF1_FINM2 Peptide chain release factor 1 OS=Finegoldia magna (strain ATCC 29328) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B9DMD1|RF1_STACT Peptide chain release factor 1 OS=Staphylococcus carnosus (strain TM300) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain RML369-C) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU 85-389) GN=prfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
270007320 387 hypothetical protein TcasGA2_TC013879 [T 0.793 0.447 0.447 2e-38
91081965 383 PREDICTED: similar to AGAP012082-PA, par 0.793 0.451 0.447 3e-38
395535168 383 PREDICTED: peptide chain release factor 0.766 0.436 0.405 1e-37
195472530 392 GE18626 [Drosophila yakuba] gi|194174654 0.802 0.446 0.422 5e-37
19921226 392 CG5705 [Drosophila melanogaster] gi|7298 0.802 0.446 0.422 8e-37
291243180 411 PREDICTED: CG5705-like [Saccoglossus kow 0.743 0.394 0.423 2e-36
194860855 392 GG23822 [Drosophila erecta] gi|190661533 0.802 0.446 0.422 2e-36
195435374 397 GK14545 [Drosophila willistoni] gi|19416 0.802 0.440 0.417 2e-36
118088382 394 PREDICTED: mitochondrial translational r 0.766 0.423 0.415 3e-36
321479100 417 hypothetical protein DAPPUDRAFT_299896 [ 0.788 0.412 0.395 3e-36
>gi|270007320|gb|EFA03768.1| hypothetical protein TcasGA2_TC013879 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 125/219 (57%), Gaps = 46/219 (21%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
           VQR+P TEK+GR+HTSTVSV  LPQP +IEV++D KDLK+ETKRA+GAGGQHVNTT+SAV
Sbjct: 209 VQRIPTTEKAGRIHTSTVSVVALPQPTEIEVNIDNKDLKIETKRASGAGGQHVNTTESAV 268

Query: 61  RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
           R+TH+PTG SVE Q DRSQ+KNR  ALAKL+ LIY+   EEQ    + R    R  +   
Sbjct: 269 RVTHLPTGFSVECQVDRSQVKNRQIALAKLRALIYQRDLEEQ----IARNENMRKNQVRS 324

Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
           +     I  +  P                                       DRITDHR+
Sbjct: 325 NFRNEKIRTYNFP--------------------------------------QDRITDHRL 346

Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
           Q   V+N+  F+ G   L  LI  +   D Q++I+ LL+
Sbjct: 347 QGCNVHNLKGFLQGNDALGSLIKKL---DQQYKIETLLN 382

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91081965|ref|XP_967739.1| PREDICTED: similar to AGAP012082-PA, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|395535168|ref|XP_003769603.1| PREDICTED: peptide chain release factor 1-like, mitochondrial [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|195472530|ref|XP_002088553.1| GE18626 [Drosophila yakuba] gi|194174654|gb|EDW88265.1| GE18626 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|19921226|ref|NP_609617.1| CG5705 [Drosophila melanogaster] gi|7298021|gb|AAF53262.1| CG5705 [Drosophila melanogaster] gi|16769148|gb|AAL28793.1| LD18447p [Drosophila melanogaster] gi|220943136|gb|ACL84111.1| CG5705-PA [synthetic construct] gi|220953196|gb|ACL89141.1| CG5705-PA [synthetic construct] Back     alignment and taxonomy information
>gi|291243180|ref|XP_002741481.1| PREDICTED: CG5705-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|194860855|ref|XP_001969666.1| GG23822 [Drosophila erecta] gi|190661533|gb|EDV58725.1| GG23822 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195435374|ref|XP_002065668.1| GK14545 [Drosophila willistoni] gi|194161753|gb|EDW76654.1| GK14545 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|118088382|ref|XP_419682.2| PREDICTED: mitochondrial translational release factor 1-like [Gallus gallus] Back     alignment and taxonomy information
>gi|321479100|gb|EFX90056.1| hypothetical protein DAPPUDRAFT_299896 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
UNIPROTKB|F1NW58367 MTRF1L "Uncharacterized protei 0.477 0.283 0.619 5.2e-41
UNIPROTKB|F1S7X5380 MTRF1L "Uncharacterized protei 0.481 0.276 0.590 2.2e-40
MGI|MGI:1918830373 Mtrf1l "mitochondrial translat 0.467 0.273 0.617 4.6e-40
RGD|1598312373 Mtrf1l "mitochondrial translat 0.509 0.297 0.571 9.4e-40
UNIPROTKB|E2QTM1381 MTRF1L "Uncharacterized protei 0.481 0.275 0.590 2.5e-39
UNIPROTKB|F6V8L3238 MTRF1L "Uncharacterized protei 0.481 0.441 0.590 2.5e-39
UNIPROTKB|F1MCM1380 MTRF1L "Peptide chain release 0.481 0.276 0.6 4e-39
UNIPROTKB|Q2KI15380 MTRF1L "Peptide chain release 0.481 0.276 0.6 4e-39
ZFIN|ZDB-GENE-030131-8198339 mtrf1l "mitochondrial translat 0.481 0.309 0.609 8.3e-39
TIGR_CMR|GSU_3104355 GSU_3104 "peptide chain releas 0.481 0.295 0.609 6.3e-35
UNIPROTKB|F1NW58 MTRF1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 351 (128.6 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 65/105 (61%), Positives = 88/105 (83%)

Query:     1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
             VQRVPKTEK GR+HTST++VA+LPQP ++E+ ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct:   188 VQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLRIETKRASGAGGQHVNTTDSAV 247

Query:    61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
             R+ HIPTG++ E Q++RSQI+N+  A+  L   +Y I+ EE EN+
Sbjct:   248 RIVHIPTGVTSECQQERSQIRNKEKAMQMLCAKLYNIKLEE-ENK 291
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
UNIPROTKB|F1S7X5 MTRF1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1918830 Mtrf1l "mitochondrial translational release factor 1-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1598312 Mtrf1l "mitochondrial translational release factor 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTM1 MTRF1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V8L3 MTRF1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCM1 MTRF1L "Peptide chain release factor 1-like, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KI15 MTRF1L "Peptide chain release factor 1-like, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8198 mtrf1l "mitochondrial translational release factor 1-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3104 GSU_3104 "peptide chain release factor 1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8GXI1RF1_RICB8No assigned EC number0.63540.44030.2689yesN/A
P66020RF1_STAAWNo assigned EC number0.53770.48160.2932yesN/A
Q6G7J2RF1_STAASNo assigned EC number0.53770.48160.2932yesN/A
A6QIW2RF1_STAAENo assigned EC number0.53770.48160.2932yesN/A
Q2N5U6RF1_ERYLHNo assigned EC number0.60410.44030.2704yesN/A
B0UAV4RF1_METS4No assigned EC number0.60410.44030.2674yesN/A
P66018RF1_STAAMNo assigned EC number0.53770.48160.2932yesN/A
A8YY83RF1_STAATNo assigned EC number0.53770.48160.2932yesN/A
Q6GEV7RF1_STAARNo assigned EC number0.53770.48160.2932yesN/A
Q0BUJ8RF1_GRABCNo assigned EC number0.61220.44950.2784yesN/A
Q5HE82RF1_STAACNo assigned EC number0.53770.48160.2932yesN/A
Q9ZD21RF1_RICPRNo assigned EC number0.59370.44030.2704yesN/A
P66019RF1_STAANNo assigned EC number0.53770.48160.2932yesN/A
Q1RJT5RF1_RICBRNo assigned EC number0.63540.44030.2689yesN/A
B9DMD1RF1_STACTNo assigned EC number0.57540.48160.2932yesN/A
Q2FWE0RF1_STAA8No assigned EC number0.53770.48160.2932yesN/A
Q8CNI7RF1_STAESNo assigned EC number0.53270.48620.2960yesN/A
Q5HMA4RF1_STAEQNo assigned EC number0.53270.48620.2960yesN/A
Q2YUN5RF1_STAABNo assigned EC number0.53770.48160.2932yesN/A
Q2GE03RF1_NEOSMNo assigned EC number0.59180.44950.2670yesN/A
Q4L7Z9RF1_STAHJNo assigned EC number0.53210.49540.3016yesN/A
Q49Z65RF1_STAS1No assigned EC number0.53210.49540.3016yesN/A
A5IUR3RF1_STAA9No assigned EC number0.53770.48160.2932yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 2e-55
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 8e-55
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 4e-47
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 4e-37
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 4e-34
pfam00472114 pfam00472, RF-1, RF-1 domain 5e-34
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-33
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 2e-27
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 1e-26
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 6e-25
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 9e-21
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 2e-19
PRK08179200 PRK08179, prfH, peptide chain release factor-like 1e-18
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 8e-12
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 2e-10
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 7e-10
pfam00472114 pfam00472, RF-1, RF-1 domain 3e-09
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 4e-09
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 2e-08
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 1e-07
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 2e-07
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 7e-07
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 7e-07
PRK08179200 PRK08179, prfH, peptide chain release factor-like 2e-06
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 3e-04
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 5e-04
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 6e-04
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  180 bits (458), Expect = 2e-55
 Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 64/227 (28%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
           VQRVP TE  GR+HTS  +VAVLP+ +++ E+ ++ KDL+++T R++GAGGQHVNTTDSA
Sbjct: 187 VQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSA 246

Query: 60  VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
           VR+TH+PTGI VE Q++RSQ KN+A A+  L+  +Y+ +                     
Sbjct: 247 VRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAE--------------------- 285

Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI---- 175
                                      ++   +  ++R        V + D ++RI    
Sbjct: 286 --------------------------RQKAQAEEASERK-----SQVGSGDRSERIRTYN 314

Query: 176 ------TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
                 TDHRI  T+Y + E M GG  L E+I  +   D   ++ +L
Sbjct: 315 FPQNRVTDHRINLTLYKLDEVMEGGK-LDEIIDALIAEDQAEQLAEL 360

Length = 363
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
KOG2726|consensus386 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 99.98
PRK09256138 hypothetical protein; Provisional 99.9
COG0216363 PrfA Protein chain release factor A [Translation, 99.89
COG1186239 PrfB Protein chain release factor B [Translation, 99.87
PRK08787313 peptide chain release factor 2; Provisional 99.86
PRK05589325 peptide chain release factor 2; Provisional 99.86
PRK07342339 peptide chain release factor 2; Provisional 99.86
TIGR03072200 release_prfH putative peptide chain release factor 99.86
PRK06746326 peptide chain release factor 2; Provisional 99.86
PRK08179200 prfH peptide chain release factor-like protein; Re 99.85
TIGR00019360 prfA peptide chain release factor 1. This model de 99.85
TIGR00020364 prfB peptide chain release factor 2. In many but n 99.84
PRK00578367 prfB peptide chain release factor 2; Validated 99.84
PRK00591359 prfA peptide chain release factor 1; Validated 99.83
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 99.83
KOG2726|consensus386 99.81
KOG3429|consensus172 99.75
PRK09256138 hypothetical protein; Provisional 99.65
KOG3429|consensus172 99.04
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-57  Score=410.95  Aligned_cols=173  Identities=45%  Similarity=0.692  Sum_probs=167.8

Q ss_pred             CeecCCCCCCCceEEeeeEEEEeCCCCCc-ccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCH
Q psy1690           1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ   79 (218)
Q Consensus         1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~-~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ   79 (218)
                      |||||.||++||+|||||+|+|+|+.++. +++|+++||+|++|||||+||||||+|+||||||||||||+|.||++|||
T Consensus       187 VQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~cQderSQ  266 (363)
T COG0216         187 VQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQ  266 (363)
T ss_pred             eeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCccchhheeeecCCceEEEecchhhh
Confidence            89999999999999999999999999875 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeec
Q psy1690          80 IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRAT  159 (218)
Q Consensus        80 ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rss  159 (218)
                      ++||+.||..|+++|++...+++.++.   ...||+|+|+++|||                           +||||   
T Consensus       267 ~kNk~kAmkvL~ARl~~~~~~~~~~~~---~~~RksqVGSGDRSE---------------------------rIRTY---  313 (363)
T COG0216         267 HKNKAKAMKVLRARLYDAERQKAQAEE---ASERKSQVGSGDRSE---------------------------RIRTY---  313 (363)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCchhh---------------------------hhhcc---
Confidence            999999999999999999999988888   999999999999999                           99999   


Q ss_pred             CCCCCcccccCCceeeeeeccceeEechhhhhcc-hHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690         160 GAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSG-GAMLHELISDIRQHDYQFRIDQLL  217 (218)
Q Consensus       160 GpGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~-~~al~~l~~~l~~~~~~~r~~~~~  217 (218)
                             |  +++.||+|||.|++++.++++|.| +  |+.+|+.|...++.++++++.
T Consensus       314 -------N--fPQnRVTDHRI~lTl~kLd~vm~gG~--LDeii~aLi~~~q~~~L~~l~  361 (363)
T COG0216         314 -------N--FPQNRVTDHRINLTLYKLDEVMEGGK--LDEIIDALIAEDQAEQLAELG  361 (363)
T ss_pred             -------C--CCCCcccchhcccccccHHHHhccCc--HHHHHHHHHHHHHHHHHHHhh
Confidence                   9  999999999999999999999995 6  999999999999999998864

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>KOG2726|consensus Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>KOG2726|consensus Back     alignment and domain information
>KOG3429|consensus Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 6e-30
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 8e-30
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 7e-26
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 1e-06
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 1e-24
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 1e-20
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 3e-04
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 5e-20
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 2e-19
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 4e-04
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 4e-17
3f1e_X378 Crystal Structure Of A Translation Termination Comp 1e-13
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 2e-13
2wh1_Y351 Insights Into Translational Termination From The St 2e-13
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-13
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 2e-13
2jy9_A148 Nmr Structure Of Putative Trna Hydrolase Domain Fro 5e-05
4dh9_Y140 Crystal Structure Of Yaej Bound To The 70s Ribosome 5e-05
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 4e-04
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
           VQRVP TE  GR+HTST +VAVLP+ ++ ++ +  +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61  RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
           R+TH+PTGI V  Q +RSQ +N+  AL  L+  +Y++Q E++E             R I 
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
            + +S I                               TG   + + T +   +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
           I  T Y + E + G   L E+IS + +HD +  ++++L 
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVLG 334
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2JY9|A Chain A, Nmr Structure Of Putative Trna Hydrolase Domain From Salmonella Typhimurium. Northeast Structural Genomics Consortium Target Str220 Length = 148 Back     alignment and structure
>pdb|4DH9|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome Length = 140 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-53
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-11
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 4e-04
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 3e-53
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 2e-11
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 6e-04
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 8e-53
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 2e-11
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 4e-04
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-51
2b3t_B360 RF-1, peptide chain release factor 1; translation 3e-11
2b3t_B360 RF-1, peptide chain release factor 1; translation 5e-04
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 4e-43
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 9e-11
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 4e-41
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 1e-11
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 2e-40
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 2e-11
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 8e-18
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-05
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 3e-17
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 5e-05
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 3e-13
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
 Score =  175 bits (446), Expect = 1e-53
 Identities = 47/104 (45%), Positives = 72/104 (69%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
           VQRVP TE  GR+HTST +V V+P+ +++E  +D KDL+V+   A+GAGGQ+VN   +AV
Sbjct: 198 VQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAV 257

Query: 61  RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
           R+ H+PT I VE QE+R+Q KNR  A+  ++  + +   +  ++
Sbjct: 258 RIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQD 301
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.95
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.94
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.92
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 99.9
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 99.86
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 99.85
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 99.84
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 99.84
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 99.84
2b3t_B360 RF-1, peptide chain release factor 1; translation 99.82
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.8
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.77
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.73
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
Probab=100.00  E-value=8.5e-52  Score=379.01  Aligned_cols=173  Identities=42%  Similarity=0.616  Sum_probs=167.1

Q ss_pred             CeecCCCCCCCceEEeeeEEEEeCCCCCcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCHH
Q psy1690           1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI   80 (218)
Q Consensus         1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ~   80 (218)
                      |||||+||++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||+
T Consensus       180 vqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~  259 (354)
T 3d5a_X          180 VQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQI  259 (354)
T ss_dssp             EEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHH
T ss_pred             EEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHH
Confidence            69999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeecC
Q psy1690          81 KNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATG  160 (218)
Q Consensus        81 ~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rssG  160 (218)
                      +||+.||++|+++|+++..+++.++.   ...|+.+++.++||+                           +||+|    
T Consensus       260 ~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~i~~g~rse---------------------------~IRtY----  305 (354)
T 3d5a_X          260 KNREKALMILRSRLLEMKRAEEAERL---RKTRLAQIGTGERSE---------------------------KIRTY----  305 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCGGGGSC---------------------------SSEEE----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccccccC---------------------------CeeeE----
Confidence            99999999999999999999988888   889999999999999                           99999    


Q ss_pred             CCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690         161 AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL  217 (218)
Q Consensus       161 pGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~~  217 (218)
                            |  ++.-||+|||||+++.+++.+|+|+  |+.||+.+...+..++++++-
T Consensus       306 ------n--f~q~rVtDhR~~~~~~~l~~vldG~--Ld~~I~a~l~~~~~~~l~~~~  352 (354)
T 3d5a_X          306 ------N--FPQSRVTDHRIGFTTHDLEGVLSGH--LTPILEALKRADQERQLAALA  352 (354)
T ss_dssp             ------E--TTTTEEEETTTTEEECCHHHHTTTC--CHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------E--CCCCeeeecccCceeCChHHhhCCc--hHHHHHHHHHHHHHHHHHhhh
Confidence                  8  8889999999999999999999998  999999999999999998763
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 6e-22
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 6e-17
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 1e-15
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 4e-04
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 2e-12
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score = 90.1 bits (223), Expect = 6e-22
 Identities = 60/202 (29%), Positives = 88/202 (43%), Gaps = 46/202 (22%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
           + R    +  GR HTS  S  V P+   DI++ ++  DL+++  RA+GAGGQHVN T+SA
Sbjct: 198 LVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 257

Query: 60  VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
           VR+THIPTGI  + Q DRSQ KN+  A+ ++K  +YE++ +++                 
Sbjct: 258 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKN---------------- 301

Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
                                       EK    + K   G G Q  +      RI D R
Sbjct: 302 ---------------------------AEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLR 334

Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
                 N    + G   L + I
Sbjct: 335 TGVETRNTQAVLDGS--LDQFI 354
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 99.89
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.88
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 99.88
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 99.84
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.51
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.7e-54  Score=389.55  Aligned_cols=173  Identities=45%  Similarity=0.694  Sum_probs=155.2

Q ss_pred             CeecCCCCCCCceEEeeeEEEEeCCCCCcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCHH
Q psy1690           1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI   80 (218)
Q Consensus         1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ~   80 (218)
                      |||||+|+++||+|||||+|+|+|+.++.++.|+++||+|+++|||||||||||||+|||||+|+||||+|.|+++|||+
T Consensus       161 v~Rvp~~~~~~r~hTs~~~V~v~p~~~~~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTGi~v~~q~eRSQ~  240 (333)
T d1rq0a_         161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQY  240 (333)
T ss_dssp             EEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHH
T ss_pred             EEEecccCCCCceEEEEEEEEEecccccccccccccceeEEeecCCccccchhhhhhheeEEEEcCCccEEEcccccccH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeecC
Q psy1690          81 KNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATG  160 (218)
Q Consensus        81 ~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rssG  160 (218)
                      +||+.||++|+++|++...+++.++.   ...|+.++++++||+                           +||+|    
T Consensus       241 ~Nk~~A~~~L~~kl~~~~~~~~~~~~---~~~r~~~~~~~~r~~---------------------------~iRtY----  286 (333)
T d1rq0a_         241 QNKQTALRILRARLYQLQKEQKEREI---SQKRKSQIGTGERSE---------------------------KIRTY----  286 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTT---CC----------CCC---------------------------EEEEE----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccccCC---------------------------Cceee----
Confidence            99999999999999999999988888   889999999999999                           99999    


Q ss_pred             CCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690         161 AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL  217 (218)
Q Consensus       161 pGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~~  217 (218)
                            |  ++.-||+|||||+++.+++.+|+|+  |+.||+.|.....+++++++|
T Consensus       287 ------~--~p~~rV~DhR~~~~~~~l~~vl~G~--ld~~i~~~~~~~~~~~l~~~l  333 (333)
T d1rq0a_         287 ------N--FPQNRVTDHRINYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVL  333 (333)
T ss_dssp             ------E--TTTTEEEETTTTEEESCHHHHHTTC--CHHHHHHHHHHHHTTTHHHHC
T ss_pred             ------e--CCCCcchhhccCCeecChhHHhCCC--hHHHHHHHHHHHHHHHHHhhC
Confidence                  8  7999999999999999999999998  999999999999999999986
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure