Psyllid ID: psy16924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccEccccccEEHHHHcccccccccccccccccccccccccccccccccEEEEEEcccEEEccccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
mgdrpaaerackdpnpiidgrkANVNLAIlgakprgtlppgishqrslalgsndfeytgwPSFLMIYVHMGSiltfefnpflkpypisgikllv
Flexible Loop (DISEMBL)
mgdrpaaerackdpnpiidgrkANVNLAILGakprgtlppgISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEfnpflkpypisgikllv
Low Complexity Region (SEG)
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Disordered region (IsUnstruct)
*********************KANVNLAILGAK************RSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKL**
Disordered Region (DISOPRED)
**********CKDPNPIIDGRKANVNLAILG****************************WPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Disordered Region (DISEMBL)
*********ACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Disordered Region (DISPRO)
********RACKDPNPIIDGRKANVNLAILGAKPR**LPPGI*HQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYTGWPSFLMIYVHMGSILTFEFNPFLKPYPISGIKLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9I8B3	224	RNA-binding protein 24-B	N/A	N/A	0.446	0.187	0.790	1e-12
Q5ZJX4	215	RNA-binding protein 38 OS	yes	N/A	0.372	0.162	0.914	2e-12
Q6P8A7	226	RNA-binding protein 24 OS	yes	N/A	0.446	0.185	0.790	2e-12
D3Z4I3	236	RNA-binding protein 24 OS	yes	N/A	0.446	0.177	0.790	2e-12
Q9BX46	236	RNA-binding protein 24 OS	yes	N/A	0.446	0.177	0.790	2e-12
Q7T3I7	214	RNA-binding protein 38 OS	N/A	N/A	0.372	0.163	0.914	2e-12
Q6DIV4	219	RNA-binding protein 38 OS	no	N/A	0.372	0.159	0.914	2e-12
Q6GQD3	225	RNA-binding protein 24-A	N/A	N/A	0.446	0.186	0.790	2e-12
Q5ZMA3	225	RNA-binding protein 24 OS	yes	N/A	0.446	0.186	0.790	2e-12
Q9H0Z9	239	RNA-binding protein 38 OS	no	N/A	0.542	0.213	0.637	3e-12

>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating myog levels. May bind to the 3'-UTR of myog mRNA and regulate its stability.
Xenopus laevis (taxid: 8355)

>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/35 (91%), Positives = 32/35 (91%)

Query: 1  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
          M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93

RNA-binding protein that specifically bind the 3'-UTR of some transcripts, leading to maintain their stability. Also acts as a mRNA splicing factor. May play a role in myogenic differentiation.

Gallus gallus (taxid: 9031)

>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating myog levels. May bind to the 3'-UTR of myog mRNA and regulate its stability.

Xenopus tropicalis (taxid: 8364)

>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating MYOG levels. Binds to the 3'-UTR of MYOG mRNA and regulates its stability.

Mus musculus (taxid: 10090)

>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating MYOG levels. Binds to the 3'-UTR of MYOG mRNA and regulates its stability.

Homo sapiens (taxid: 9606)

>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/35 (91%), Positives = 32/35 (91%)

Query: 1  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
          M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93

RNA-binding protein that specifically bind the 3'-UTR of VegT transcripts, leading to maintain their stability and stimulate their translation, thereby playing a role in germ layer formation. VegT is a localized maternal determinant essentially required for endoderm formation. Also has some proneural function in the open neural plate and in the context of retinogenesis. May also act as a mRNA splicing factor. May play a role in myogenic differentiation.

Xenopus laevis (taxid: 8355)

>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/35 (91%), Positives = 32/35 (91%)

Query: 1  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
          M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 59 MSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93

RNA-binding protein that specifically bind the 3'-UTR of VegT transcripts, leading to maintain their stability and stimulate their translation, thereby playing a role in germ layer formation. VegT is a localized maternal determinant essentially required for endoderm formation. Also has some proneural function in the open neural plate and in the context of retinogenesis. May also act as a mRNA splicing factor. May play a role in myogenic differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating myog levels. May bind to the 3'-UTR of myog mRNA and regulate its stability.

Xenopus laevis (taxid: 8355)

>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

Plays a role in myogenic differentiation by regulating MYOG levels. Binds to the 3'-UTR of MYOG mRNA and regulates its stability.

Gallus gallus (taxid: 9031)

>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 38/58 (65%), Gaps = 7/58 (12%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISHQRSLALGSNDFEYT 58
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR       S Q   A+G      T
Sbjct: 82  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-------SLQTGFAIGVQQLHPT 132

RNA-binding protein that specifically bind the 3'-UTR of CDKN1A transcripts, leading to maintain the stability of CDKN1A transcripts, thereby acting as a mediator of the p53/TP53 family to regulate CDKN1A. CDKN1A is a cyclin-dependent kinase inhibitor transcriptionally regulated by the p53/TP53 family to induce cell cycle arrest. Isoform 1, but not isoform 2, has the ability to induce cell cycle arrest in G1 and maintain the stability of CDKN1A transcripts induced by p53/TP53. Also acts as a mRNA splicing factor. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Plays a role in myogenic differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
328718182	292	PREDICTED: RNA-binding protein 38-like [	0.457	0.147	0.860	3e-14
332026355	248	RNA-binding protein 38 [Acromyrmex echin	0.606	0.229	0.647	7e-14
383852443	279	PREDICTED: RNA-binding protein 38-like i	0.404	0.136	0.973	9e-14
328786606	280	PREDICTED: RNA-binding protein 38-like i	0.404	0.135	0.973	9e-14
345485059	271	PREDICTED: RNA-binding protein 38-like i	0.404	0.140	0.947	2e-13
307198651	225	RNA-binding protein 24-B [Harpegnathos s	0.404	0.168	0.947	2e-13
322794836	135	hypothetical protein SINV_12982 [Solenop	0.404	0.281	0.973	3e-13
345485061	327	PREDICTED: RNA-binding protein 38-like i	0.404	0.116	0.947	3e-13
380017616	333	PREDICTED: RNA-binding protein 38-like [	0.404	0.114	0.973	5e-13
357605924	261	RNA binding region containing protein 1	0.404	0.145	0.947	7e-13

>gi|328718182|ref|XP_001948033.2| PREDICTED: RNA-binding protein 38-like [Acyrthosiphon pisum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 39/43 (90%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           MGDRPAAERACK+PNPIIDGRKANVNLAILGAKPRG L P  +
Sbjct: 97  MGDRPAAERACKEPNPIIDGRKANVNLAILGAKPRGNLQPAFA 139

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026355|gb|EGI66484.1| RNA-binding protein 38 [Acromyrmex echinatior]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 48/68 (70%), Gaps = 11/68 (16%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL------PPGISHQRS-----LA 49
           MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L      P  + HQ       L 
Sbjct: 170 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNLQTTKLIPINVFHQSGCIVSFLE 229

Query: 50  LGSNDFEY 57
           L ++D +Y
Sbjct: 230 LKNHDMKY 237

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852443|ref|XP_003701737.1| PREDICTED: RNA-binding protein 38-like isoform 2 [Megachile rotundata]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786606|ref|XP_003250820.1| PREDICTED: RNA-binding protein 38-like isoform 1 [Apis mellifera] gi|340719620|ref|XP_003398247.1| PREDICTED: RNA-binding protein 38-like [Bombus terrestris] gi|350410698|ref|XP_003489112.1| PREDICTED: RNA-binding protein 38-like [Bombus impatiens]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485059|ref|XP_001606177.2| PREDICTED: RNA-binding protein 38-like isoform 1 [Nasonia vitripennis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAI+GAKPRG L
Sbjct: 90  MGDRPAAERACKDPNPIIDGRKANVNLAIIGAKPRGNL 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198651|gb|EFN79487.1| RNA-binding protein 24-B [Harpegnathos saltator]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGD+PAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94  MGDKPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794836|gb|EFZ17783.1| hypothetical protein SINV_12982 [Solenopsis invicta]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 96  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 133

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485061|ref|XP_003425186.1| PREDICTED: RNA-binding protein 38-like isoform 2 [Nasonia vitripennis]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAI+GAKPRG L
Sbjct: 90  MGDRPAAERACKDPNPIIDGRKANVNLAIIGAKPRGNL 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017616|ref|XP_003692748.1| PREDICTED: RNA-binding protein 38-like [Apis florea]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 94  MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 131

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605924|gb|EHJ64837.1| RNA binding region containing protein 1 [Danaus plexippus]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 36/38 (94%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTL 38
           MGDR AAERACKDPNPIIDGRKANVNLAILGAKPRG L
Sbjct: 77  MGDRAAAERACKDPNPIIDGRKANVNLAILGAKPRGNL 114

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
ZFIN|ZDB-GENE-060312-43	245	rbm24b "RNA binding motif prot	0.446	0.171	0.837	2.1e-13
UNIPROTKB|E1BZ17	245	RBM24 "RNA-binding protein 24"	0.446	0.171	0.790	7.1e-13
UNIPROTKB|Q5ZMA3	225	RBM24 "RNA-binding protein 24"	0.446	0.186	0.790	7.1e-13
UNIPROTKB|A6QPJ1	236	RBM24 "Uncharacterized protein	0.446	0.177	0.790	7.1e-13
UNIPROTKB|E2RM01	116	RBM24 "Uncharacterized protein	0.446	0.362	0.790	7.1e-13
UNIPROTKB|E9PAY4	178	RBM24 "RNA-binding protein 24"	0.446	0.235	0.790	7.1e-13
UNIPROTKB|H0YA61	80	RBM24 "RNA-binding protein 24"	0.446	0.525	0.790	7.1e-13
UNIPROTKB|Q9BX46	236	RBM24 "RNA-binding protein 24"	0.446	0.177	0.790	7.1e-13
UNIPROTKB|F1RUJ2	254	RBM24 "Uncharacterized protein	0.446	0.165	0.790	7.1e-13
UNIPROTKB|Q6GQD3	225	rbm24-a "RNA-binding protein 2	0.446	0.186	0.790	7.1e-13

ZFIN|ZDB-GENE-060312-43 rbm24b "RNA binding motif protein 24b" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 36/43 (83%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  L PG S
Sbjct:    59 MADRSAAERACKDPNPIIDGRKANVNLAYLGAKPR-ILQPGFS 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001947 "heart looping" evidence=IMP

GO:0072358 "cardiovascular system development" evidence=IGI

GO:0003228 "atrial cardiac muscle tissue development" evidence=IMP

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IMP

UNIPROTKB|E1BZ17 RBM24 "RNA-binding protein 24" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=IEA

UNIPROTKB|Q5ZMA3 RBM24 "RNA-binding protein 24" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0000166 "nucleotide binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0010830 "regulation of myotube differentiation" evidence=ISS

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

UNIPROTKB|A6QPJ1 RBM24 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2RM01 RBM24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E9PAY4 RBM24 "RNA-binding protein 24" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:     1 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 42

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=IEA

UNIPROTKB|H0YA61 RBM24 "RNA-binding protein 24" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    18 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 59

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9BX46 RBM24 "RNA-binding protein 24" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0000166 "nucleotide binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0010830 "regulation of myotube differentiation" evidence=ISS

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

UNIPROTKB|F1RUJ2 RBM24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    77 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 118

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q6GQD3 rbm24-a "RNA-binding protein 24-A" [Xenopus laevis (taxid:8355)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 34/43 (79%), Positives = 36/43 (83%)

Query:     1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
             M DR AAERACKDPNPIIDGRKANVNLA LGAKPR  + PG +
Sbjct:    59 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-IMQPGFA 100

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0010830 "regulation of myotube differentiation" evidence=IMP

GO:0043488 "regulation of mRNA stability" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BX46	RBM24_HUMAN	No assigned EC number	0.7906	0.4468	0.1779	yes	N/A
D3Z4I3	RBM24_MOUSE	No assigned EC number	0.7906	0.4468	0.1779	yes	N/A
Q5ZMA3	RBM24_CHICK	No assigned EC number	0.7906	0.4468	0.1866	yes	N/A
Q6P8A7	RBM24_XENTR	No assigned EC number	0.7906	0.4468	0.1858	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
cd12384	76	cd12384, RRM_RBM24_RBM38_like, RNA recognition mot	8e-13

>gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

 Score = 57.6 bits (140), Expect = 8e-13
 Identities = 23/28 (82%), Positives = 25/28 (89%)

Query: 1  MGDRPAAERACKDPNPIIDGRKANVNLA 28
            D+ +AERACKDPNPIIDGRKANVNLA
Sbjct: 49 FKDKESAERACKDPNPIIDGRKANVNLA 76

This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG0149|consensus	247		99.82
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	80.83

>KOG0149|consensus

Probab=99.82  E-value=4.1e-21  Score=150.80  Aligned_cols=36  Identities=75%  Similarity=1.121  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeeecCCccCC
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG   36 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~LGakPr~   36 (94)
                      |+|+|||+|||+||||||||||||||||+||+|||.
T Consensus        61 f~d~~aa~rAc~dp~piIdGR~aNcnlA~lg~~pR~   96 (247)
T KOG0149|consen   61 FRDAEAATRACKDPNPIIDGRKANCNLASLGGKPRP   96 (247)
T ss_pred             eecHHHHHHHhcCCCCcccccccccchhhhcCccCC
Confidence            689999999999999999999999999999999984

>PF13893 RRM_5: RNA recognition motif

Probab=80.83  E-value=0.63  Score=26.67  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA   28 (94)
                      |.+.++|++|.+.-| -.++||+-+|..|
T Consensus        28 f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen   28 FASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             ESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            468899999998433 2379998887764

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
2cqd_A	116	Solution Structure Of The Rna Recognition Motif In		3e-13

>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna- Binding Region Containing Protein 1 Length = 116

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/35 (91%), Positives = 32/35 (91%)
Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPR 35
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR
Sbjct: 66  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	7e-10
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	5e-05
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	5e-04
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	8e-04
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	9e-04

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 50.8 bits (122), Expect = 7e-10
 Identities = 32/41 (78%), Positives = 32/41 (78%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR      
Sbjct: 66  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGF 106

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 4/39 (10%)

Query: 3   DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPG 41
           D              +DGR  +         PRG  P G
Sbjct: 67  DPNCVGTVLASRPHTLDGRNIDPKPCT----PRGMQPSG 101

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 3   DRPAAERACKDPNPIIDGRKANVNLAIL-GAKPR 35
           D+   ++        +D +  +  +A    A+P+
Sbjct: 76  DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 109

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87

 Score = 34.5 bits (80), Expect = 8e-04
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 3  DRPAAERACKDPNPIIDGRKANVNLA 28
          D  + E+        +DGR  +   A
Sbjct: 62 DAASVEKVLDQKEHRLDGRVIDPKKA 87

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 3   DRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH 44
           +     +     + +IDGR  +  L       + +   G S 
Sbjct: 66  EYETQVKVMSQRH-MIDGRWCDCKLPN----SKQSQDSGPSS 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	94.61
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	92.85
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	91.94
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	90.19
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	85.6
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	85.13
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	84.12
2div_A	99	TRNA selenocysteine associated protein; structural	83.95
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	83.07
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	82.77
2dis_A	109	Unnamed protein product; structural genomics, RRM	82.37
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	82.15
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	81.84
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	81.67
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	81.48
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	81.39
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	81.14
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	80.82
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	80.63
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	80.45

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.61  E-value=0.044  Score=33.95  Aligned_cols=41  Identities=80%  Similarity=1.242  Sum_probs=33.7

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeeeecCCccCCCCCCCCc
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS   43 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~LGakPr~~~~~gf~   43 (94)
                      .+.++|++|++.-|-.|+||+-.|.+|.-..+|+ ..++++.
T Consensus        67 ~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~~-~~~~~~~  107 (116)
T 2cqd_A           67 ADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA  107 (116)
T ss_dssp             SSHHHHHHHHTCSSCEETTEECEEEESTTTCCCC-CCCCCCS
T ss_pred             CCHHHHHHHHHhCCCcCCCEEEEEEEcccCCCcc-ccCCCcc
Confidence            5789999999977779999999999999888887 3444443

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.85  E-value=0.059  Score=30.63  Aligned_cols=29  Identities=10%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~   29 (94)
                      +.+.++|++|++..|-.|+||+-.|+.|+
T Consensus        49 f~~~~~a~~a~~~~~~~~~g~~l~v~~a~   77 (77)
T 1uaw_A           49 FMDQAGVDKVLAQSRHELDSKTIDPKVAF   77 (77)
T ss_dssp             CCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred             EcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence            35789999999977778999999999874

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=91.94  E-value=0.12  Score=29.29  Aligned_cols=28  Identities=7%  Similarity=0.154  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      +.+.++|++|++..+-.|+||+-.|+.|
T Consensus        48 f~~~~~a~~Ai~~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           48 FKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             CSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred             ECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            3578999999997667799999998875

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.19  E-value=0.11  Score=31.42  Aligned_cols=28  Identities=29%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHhcCCCC-cccccccceeee
Q psy16924          1 MGDRPAAERACKDPNP-IIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpnP-iIDGRrANcNLA   28 (94)
                      +.+.++|++|++.-|- .|+||+-.|+.|
T Consensus        59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           59 MENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             ESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            3578999999996664 599999999998

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=85.60  E-value=0.71  Score=26.04  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      +.+.++|++|++--+-.|+||+-.|+.|
T Consensus        48 f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           48 FESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             CSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             ECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            3578999999984346699999888765

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=85.13  E-value=0.6  Score=30.75  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=23.8

Q ss_pred             CCCHHHHHHHhc--CCCC-cccccccceeeee
Q psy16924          1 MGDRPAAERACK--DPNP-IIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA~   29 (94)
                      |.|.++|++|++  +-++ .|+||+-.|+.|-
T Consensus        69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~  100 (112)
T 1x4f_A           69 METREDAMAMVDHCLKKALWFQGRCVKVDLSE  100 (112)
T ss_dssp             CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred             ECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence            578899999998  4354 5999999999983

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.12  E-value=0.8  Score=27.35  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAIL   30 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~L   30 (94)
                      +.+.++|++|++.-| -.|+||+-.|.+|--
T Consensus        60 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   90 (101)
T 2fc9_A           60 FASFEDAKEALNSCNKREIEGRAIRLELQGP   90 (101)
T ss_dssp             CSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred             ECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence            468899999999666 459999999998743

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.95  E-value=0.96  Score=26.78  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccc----cceeeeecC
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRK----ANVNLAILG   31 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRr----ANcNLA~LG   31 (94)
                      +.+.++|++|++.-| -.|+||+    -.|+.|.-+
T Consensus        59 f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           59 FADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             CSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred             eCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence            468899999999765 5599999    777776443

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=83.07  E-value=0.73  Score=27.28  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=25.1

Q ss_pred             CCHHHHHHHhcCCC-CcccccccceeeeecCCc
Q psy16924          2 GDRPAAERACKDPN-PIIDGRKANVNLAILGAK   33 (94)
Q Consensus         2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGak   33 (94)
                      .+.++|++|++.-| -.|+||+-.|..|--..+
T Consensus        58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (98)
T 2cpf_A           58 KKPEQAQKALKQLQGHTVDGHKLEVRISERATK   90 (98)
T ss_dssp             SSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred             CCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence            57899999999644 569999999999855433

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.77  E-value=0.83  Score=27.36  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLAIL   30 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~L   30 (94)
                      .|.++|++|+++ .-.|+||+-.|.+|.-
T Consensus        65 ~~~~~a~~A~~~-~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           65 TEYETQVKVMSQ-RHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             SSHHHHHHHHHS-CEEETTEEEEEECCCT
T ss_pred             CCHHHHHHHHHc-CCeeCCeEEEEEecCC
Confidence            578999999996 4589999999998743

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.37  E-value=0.91  Score=27.35  Aligned_cols=27  Identities=22%  Similarity=0.118  Sum_probs=23.4

Q ss_pred             CCHHHHHHHhcCCC---Ccccccccceeee
Q psy16924          2 GDRPAAERACKDPN---PIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpn---PiIDGRrANcNLA   28 (94)
                      .|.++|++|++.-|   -.|+||+-.|+.|
T Consensus        60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a   89 (109)
T 2dis_A           60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWA   89 (109)
T ss_dssp             SSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             cCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence            57899999999764   5799999999987

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=82.15  E-value=0.75  Score=27.75  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHhcC-CCC-cccccccceeee
Q psy16924          1 MGDRPAAERACKD-PNP-IIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~d-pnP-iIDGRrANcNLA   28 (94)
                      +.+.|+|++|++. -|. .|+||+-.|+.|
T Consensus        51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A           51 FSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             CSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             ecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            4678999999974 344 499999999987

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.84  E-value=0.88  Score=26.77  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             CCCHHHHHHHhcCCC--Ccccccccceeeee
Q psy16924          1 MGDRPAAERACKDPN--PIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpn--PiIDGRrANcNLA~   29 (94)
                      +.|.++|++|++.-|  -.|+||+-.|..|-
T Consensus        51 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~   81 (93)
T 2cqh_A           51 YPDQNWAIRAIETLSGKVELHGKIMEVDYSV   81 (93)
T ss_dssp             CSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             ECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence            468899999998555  56999999999884

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.67  E-value=2  Score=26.53  Aligned_cols=30  Identities=13%  Similarity=0.068  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAIL   30 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~L   30 (94)
                      +.+.|+|++|++--.-.|+||+..|.++.-
T Consensus        62 F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~   91 (102)
T 1wez_A           62 FATHEDAVAAMAKDKANMQHRYVELFLNST   91 (102)
T ss_dssp             CSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred             ECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence            367899999997544679999999988754

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.48  E-value=0.88  Score=27.10  Aligned_cols=29  Identities=31%  Similarity=0.243  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~   29 (94)
                      +.+.++|++|++.-| -.|+||+-.|.+|-
T Consensus        61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   90 (102)
T 2cqb_A           61 FELAEDAAAAIDNMNESELFGRTIRVNLAK   90 (102)
T ss_dssp             CSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             ECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence            467899999998544 45999999999974

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=81.39  E-value=1.4  Score=26.89  Aligned_cols=29  Identities=24%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924          2 GDRPAAERACKDPN-PIIDGRKANVNLAIL   30 (94)
Q Consensus         2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L   30 (94)
                      .+.++|++|++.-| -.|+||+-.|..|--
T Consensus        65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (115)
T 2dgo_A           65 FNKWDAENAIQQMGGQWLGGRQIRTNWATR   94 (115)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            57899999998544 569999999999743

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=81.14  E-value=0.47  Score=28.02  Aligned_cols=31  Identities=16%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHhcCCC-CcccccccceeeeecC
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAILG   31 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~LG   31 (94)
                      +.+.++|++|++.-| -.|+||+-.|+.|--+
T Consensus        47 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A           47 LLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             ECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence            468899999999666 4599999999998443

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=80.82  E-value=0.28  Score=31.51  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CCCHHHHHHHhcC--CCC-cccccccceeee
Q psy16924          1 MGDRPAAERACKD--PNP-IIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~d--pnP-iIDGRrANcNLA   28 (94)
                      |.|.++|++|++.  -++ .|+||+-.|+.|
T Consensus        59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a   89 (102)
T 1x4d_A           59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLS   89 (102)
T ss_dssp             ESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred             ECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence            5688999999983  344 699999999998

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.63  E-value=0.64  Score=30.46  Aligned_cols=28  Identities=18%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHhc--CCC-Ccccccccceeee
Q psy16924          1 MGDRPAAERACK--DPN-PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~--dpn-PiIDGRrANcNLA   28 (94)
                      |.|.++|++|++  +-+ ..|+||+-.|+.|
T Consensus        59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A   89 (105)
T 1sjq_A           59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFS   89 (105)
T ss_dssp             ESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred             ECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence            468899999998  555 5699999999997

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.45  E-value=1.1  Score=26.31  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA   28 (94)
                      +.+.++|++|++ -| -.|+||+-.|..|
T Consensus        57 f~~~~~a~~A~~-~~g~~~~gr~i~v~~a   84 (91)
T 2dgw_A           57 FSNEEEVKQALK-CNREYMGGRYIEVFRE   84 (91)
T ss_dssp             CSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred             ECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence            368899999999 66 5599999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d2cqda1	103	d.58.7.1 (A:1-103) RNA-binding region containing p	8e-07

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-07
 Identities = 34/43 (79%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGIS 43
           M DR AAERACKDPNPIIDGRKANVNLA LGAKPR +L  G +
Sbjct: 59  MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFA 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	97.7
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	95.42
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	94.45
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	93.53
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	92.99
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	92.82
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	92.49
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	92.06
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	89.67
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	88.2
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	87.27
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	86.52
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	85.87
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	85.44
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	83.5
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	82.88
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	82.53
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	82.45
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	82.11
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	81.55
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	81.52
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	81.14
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	81.0
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	80.82
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	80.12

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.3e-05  Score=49.65  Aligned_cols=42  Identities=79%  Similarity=1.195  Sum_probs=37.9

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeeeecCCccCCCCCCCCcc
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLAILGAKPRGTLPPGISH   44 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~LGakPr~~~~~gf~~   44 (94)
                      .+.|+|++|++..|..|+||+-.|++|.-..+|| ..++||++
T Consensus        60 ~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~~~pr-~~~~g~~~  101 (103)
T d2cqda1          60 ADRAAAERACKDPNPIIDGRKANVNLAYLGAKPR-SLQTGFAI  101 (103)
T ss_dssp             SSHHHHHHHHTCSSCEETTEECEEEESTTTCCCC-CCCCCCSC
T ss_pred             CCHHHHHHHHHHCCCcCCCEEEEEEEcCCCCCCC-CCCCCCCC
Confidence            5789999999988889999999999999999998 57888765

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0035  Score=36.80  Aligned_cols=28  Identities=11%  Similarity=0.255  Sum_probs=24.4

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLAI   29 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA~   29 (94)
                      .|.|+|++|++.....|+||+-+|+.||
T Consensus        50 ~~~~~a~~al~~~~~~i~Gr~i~V~~Af   77 (77)
T d1uawa_          50 MDQAGVDKVLAQSRHELDSKTIDPKVAF   77 (77)
T ss_dssp             CCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred             CCHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            5789999999875567999999999997

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0085  Score=35.08  Aligned_cols=27  Identities=7%  Similarity=0.140  Sum_probs=24.3

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      .|.++|++|++..+..|+||+..|++|
T Consensus        49 ~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1          49 KEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             SSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             CCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            578999999998888999999999876

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.025  Score=31.59  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      +.+.|+|+.|++--+-.|+||+-+|+.|
T Consensus        48 F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          48 FESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             CSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             ECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            4678999999985457799999999876

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.025  Score=33.23  Aligned_cols=31  Identities=26%  Similarity=0.494  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeeecCCccCC
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAILGAKPRG   36 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~LGakPr~   36 (94)
                      +.|.++|++|+++. -.|+||+-+|..|    +|+.
T Consensus        49 f~~~~~a~~a~~~~-~~i~g~~l~v~~a----~~k~   79 (88)
T d1wf0a_          49 FADDQIAQSLCGED-LIIKGISVHISNA----EPKH   79 (88)
T ss_dssp             CSCHHHHHHTTTCE-EEETTEEEEEECC----CCCC
T ss_pred             ECCHHHHHHHHhCC-CEECCEEeEEEeC----CCCC
Confidence            46899999999853 5799999999987    5653

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.014  Score=34.99  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      .+.++|++|+++.+ .||||+-+|++|
T Consensus        58 ~~~~~a~~al~~~~-~l~Gr~i~v~~a   83 (90)
T d2cqga1          58 TEYETQVKVMSQRH-MIDGRWCDCKLP   83 (90)
T ss_dssp             SSHHHHHHHHHSCE-EETTEEEEEECC
T ss_pred             CCHHHHHHHHhcCC-ccCCEEeEEEeC
Confidence            57899999999755 899999999987

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.027  Score=31.98  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      .|.|+|.+|++..+-.|+||+-+|+.|
T Consensus        52 ~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          52 DDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             SSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             cCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            578999999987667899999999877

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.035  Score=31.81  Aligned_cols=27  Identities=7%  Similarity=0.229  Sum_probs=22.6

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      .|.++|++|++-.+-.|+||+-+|..|
T Consensus        49 ~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_          49 KESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             SSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             CCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            688999999986667799999888654

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.082  Score=30.80  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             CCHHHHHHHhcCCCC-cccccccceeeeecCCc
Q psy16924          2 GDRPAAERACKDPNP-IIDGRKANVNLAILGAK   33 (94)
Q Consensus         2 ~D~eaA~rAc~dpnP-iIDGRrANcNLA~LGak   33 (94)
                      .+.++|++|++.-|. .|+||+-.|+.|.-+++
T Consensus        51 ~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~~   83 (85)
T d2u2fa_          51 VDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK   83 (85)
T ss_dssp             SSSHHHHHHHHTSSSCCCSSSCCEEEECCCCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            578999999998764 59999999999976543

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.1  Score=30.36  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=24.1

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~   29 (94)
                      +.+.++|++|++.-+-.|+||+-.|+.|.
T Consensus        55 f~~~~~a~~ai~~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1          55 YATVEEVDAAMNARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             ESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred             EcCHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            35789999999865678999999998874

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.27  E-value=0.13  Score=30.01  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHhcCC-CCcccccccceeeeecC
Q psy16924          1 MGDRPAAERACKDP-NPIIDGRKANVNLAILG   31 (94)
Q Consensus         1 m~D~eaA~rAc~dp-nPiIDGRrANcNLA~LG   31 (94)
                      +.+.++|++|++.- +-.|+||+-.|.+|.-+
T Consensus        51 f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~   82 (86)
T d2cpja1          51 LETRTLAEIAKVELDNMPLRGKQLRVRFACHS   82 (86)
T ss_dssp             CSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEECCCc
Confidence            46889999999964 47899999999998654

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.52  E-value=0.12  Score=29.57  Aligned_cols=29  Identities=24%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924          2 GDRPAAERACKDPN-PIIDGRKANVNLAIL   30 (94)
Q Consensus         2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L   30 (94)
                      .+.++|++|++.-| -.|+||+-.|.+|--
T Consensus        51 ~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1          51 KKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             SSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            57899999998655 569999999998743

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.87  E-value=0.13  Score=30.85  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCCHHHHHHHhc--CCCC-cccccccceeee
Q psy16924          1 MGDRPAAERACK--DPNP-IIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~--dpnP-iIDGRrANcNLA   28 (94)
                      |.+.++|.+|.+  +-|+ .|+||+-.|.+|
T Consensus        62 f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s   92 (99)
T d1x4fa1          62 METREDAMAMVDHCLKKALWFQGRCVKVDLS   92 (99)
T ss_dssp             CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred             ecchHHHHHHHHHHhcCCceECCEEEEEEEc
Confidence            578999999986  4555 489999999877

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.44  E-value=0.31  Score=30.08  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=24.3

Q ss_pred             CCHHHHHHHhcCCC-Ccccccccceeeeec
Q psy16924          2 GDRPAAERACKDPN-PIIDGRKANVNLAIL   30 (94)
Q Consensus         2 ~D~eaA~rAc~dpn-PiIDGRrANcNLA~L   30 (94)
                      .+.++|++|++.-| -.|+||+-.|..|.-
T Consensus        92 ~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~  121 (139)
T d1u6fa1          92 QSGSSAQQAIAGLNGFNILNKRLKVALAAS  121 (139)
T ss_dssp             SSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            57899999999776 459999999999853

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.71  Score=27.25  Aligned_cols=30  Identities=13%  Similarity=0.068  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeeeec
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLAIL   30 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA~L   30 (94)
                      +.+.++|++|++--+-.|+||+..|.++.=
T Consensus        62 F~~~~~a~~Al~~~~~~i~gR~I~V~~s~~   91 (102)
T d1weza_          62 FATHEDAVAAMAKDKANMQHRYVELFLNST   91 (102)
T ss_dssp             CSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred             ECCHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            467899999998555789999999998753

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.24  Score=28.75  Aligned_cols=32  Identities=31%  Similarity=0.201  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHhcCCC-CcccccccceeeeecCCccCC
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAILGAKPRG   36 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~LGakPr~   36 (94)
                      +.+.++|++|++.-| =.|+||+-.|..|    ||+.
T Consensus        57 f~~~~~A~~Ai~~l~g~~~~g~~i~v~~a----kp~~   89 (90)
T d2cq0a1          57 FHRREDAARAIAGVSGFGYDHLILNVEWA----KPST   89 (90)
T ss_dssp             ESSHHHHHHHHHHTTTCEETTEECEEEES----SCCC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEee----eCCC
Confidence            357899999999766 5799999999887    7763

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=0.38  Score=27.43  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             CCCHHHHHHHhcCCC--Ccccccccceeee
Q psy16924          1 MGDRPAAERACKDPN--PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpn--PiIDGRrANcNLA   28 (94)
                      +.|.++|++|++.-|  ..|+||+-+|+.|
T Consensus        44 f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a   73 (80)
T d2cqha1          44 YPDQNWAIRAIETLSGKVELHGKIMEVDYS   73 (80)
T ss_dssp             CSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCeEECCEEEEEEEc
Confidence            468899999998544  3599999999987

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.48  Score=28.22  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~   29 (94)
                      +.|.++|++|++.-| -.|+||+-.|.+|-
T Consensus        57 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~   86 (98)
T d1wf2a_          57 YVNERNARAAVAGEDGRMIAGQVLDINLAA   86 (98)
T ss_dssp             ESSHHHHHHHHHTTTTCEETTEECEEEETT
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            368899999999877 56999999999973

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.11  E-value=0.19  Score=28.35  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA   28 (94)
                      +.+.|+|++|++.-| -.|+||+-.|.+|
T Consensus        50 f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a   78 (81)
T d2ghpa1          50 VTSKEDARYCVEKLNGLKIEGYTLVTKVS   78 (81)
T ss_dssp             CSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            467899999998544 5699999999887

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.38  Score=29.13  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHhcCCCCcccccccceeee
Q psy16924          1 MGDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      +.+.++|.+|++--+-.|+||+-.|..|
T Consensus        69 f~~~~~a~~al~~~~~~l~G~~i~V~~a   96 (103)
T d1x4ba1          69 FSSMAEVDAAMAARPHSIDGRVVEPKRA   96 (103)
T ss_dssp             CSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred             ECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            4688999999986556799999999876

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=0.18  Score=29.65  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~   29 (94)
                      +.|.|+|.+|++.-| -.|+||+-.|..|-
T Consensus        47 f~~~~~A~~ai~~lng~~l~g~~l~v~~s~   76 (109)
T d2adca1          47 MADGNQAQLAMSHLNGHKLHGKPIRITLSK   76 (109)
T ss_dssp             ESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            468899999999766 44999999999874

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.25  Score=28.96  Aligned_cols=28  Identities=32%  Similarity=0.525  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHhcC-CCCcccccccceeee
Q psy16924          1 MGDRPAAERACKD-PNPIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~d-pnPiIDGRrANcNLA   28 (94)
                      +.+.|+|++|++. .+-.|+||+-.|+.|
T Consensus        58 f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A   86 (93)
T d2cq3a1          58 FENSADADRAREKLHGTVVEGRKIEVNNA   86 (93)
T ss_dssp             ESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            3688999999986 346799999999987

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.00  E-value=0.17  Score=28.54  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLA   28 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA   28 (94)
                      +.+.++|++|++.-| -.|+||+-.|+.|
T Consensus        51 f~~~~~A~~ai~~lng~~~~g~~l~v~~a   79 (82)
T d1b7fa1          51 FTSEMDSQRAIKVLNGITVRNKRLKVSYA   79 (82)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            468899999998543 5699999999887

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=0.29  Score=28.10  Aligned_cols=29  Identities=28%  Similarity=0.274  Sum_probs=22.9

Q ss_pred             CCCHHHHHHHhcCCC-Ccccccccceeeee
Q psy16924          1 MGDRPAAERACKDPN-PIIDGRKANVNLAI   29 (94)
Q Consensus         1 m~D~eaA~rAc~dpn-PiIDGRrANcNLA~   29 (94)
                      +.+.++|++|++.-| -.|+||+-.|+.|.
T Consensus        54 f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~   83 (90)
T d1x5sa1          54 FENIDDAKDAMMAMNGKSVDGRQIRVDQAG   83 (90)
T ss_dssp             CSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            468899999997433 34999999999983

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.12  E-value=0.58  Score=26.48  Aligned_cols=27  Identities=11%  Similarity=0.054  Sum_probs=22.0

Q ss_pred             CCHHHHHHHhcCCCCcccccccceeee
Q psy16924          2 GDRPAAERACKDPNPIIDGRKANVNLA   28 (94)
Q Consensus         2 ~D~eaA~rAc~dpnPiIDGRrANcNLA   28 (94)
                      .|.++|++|++-.+-.||||+-.|.-+
T Consensus        48 ~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          48 ARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             SSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             cchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            578999999996667899999877643