Psyllid ID: psy1695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHcHHHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHcccccHHHHHHHHcccccccccccHHcEEEEEEcccHHHHHHHHHHHHHHccccHHHEcHHHHHHHHHcc
Coil and Loop (DISEMBL)
eactdkfiqssNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISlhglpgtgknyvtDFIVSSIFKRykdkgtsrfvhkfnsrihfpnenhVSLYRLQLTNWIISNVTACDRAIFIfdevdkfpkglldviipfidhhavynqISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Flexible Loop (DISEMBL)
eactdkfiqssnvRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHkfnsrihfpnenHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIefifqcqplkvylkkl
Low Complexity Region (SEG)
EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Disordered region (IsUnstruct)
************VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYL***
Disordered Region (DISOPRED)
EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNH*****HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE****************KVYLKKL
Disordered Region (DISEMBL)
EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Disordered Region (DISPRO)
*ACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYLKKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9ERA9	273	Torsin-1A (Fragment) OS=C	N/A	N/A	0.876	0.648	0.409	3e-32
Q9ER41	336	Torsin-1B OS=Mus musculus	yes	N/A	0.851	0.511	0.406	1e-31
Q9ER39	333	Torsin-1A OS=Mus musculus	no	N/A	0.851	0.516	0.397	4e-31
Q60HG2	332	Torsin-1A OS=Macaca fasci	N/A	N/A	0.876	0.533	0.404	4e-31
O14656	332	Torsin-1A OS=Homo sapiens	yes	N/A	0.876	0.533	0.398	5e-31
O14657	336	Torsin-1B OS=Homo sapiens	no	N/A	0.896	0.538	0.398	5e-31
A4FUH1	321	Torsin-2A OS=Bos taurus G	no	N/A	0.811	0.510	0.404	4e-30
Q8R1J9	321	Torsin-2A OS=Mus musculus	no	N/A	0.811	0.510	0.392	6e-30
Q5JU69	321	Torsin-2A OS=Homo sapiens	no	N/A	0.811	0.510	0.398	9e-30
Q6AYR4	321	Torsin-2A OS=Rattus norve	no	N/A	0.811	0.510	0.386	3e-29

>sp|Q9ERA9|TOR1A_CRICR Torsin-1A (Fragment) OS=Cricetus cricetus GN=TOR1A PE=2 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 109/183 (59%), Gaps = 6/183 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C  K  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG  
Sbjct: 2   ECCGQK--RSLSREALQKDLDDKLFGQHLAKKVILNAVSGFLSNP-KPKKPLTLSLHGWT 58

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           GTGKN+ +  I  +I   Y+    S +VH F + +HFP+ ++V+LY+ QL  WI  NV+A
Sbjct: 59  GTGKNFASKIIAENI---YEGGLNSDYVHLFVATLHFPHASNVTLYKDQLQMWIRGNVSA 115

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C R+IFIFDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+ 
Sbjct: 116 CARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALDF 175

Query: 181 RKS 183
            KS
Sbjct: 176 WKS 178

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.
Cricetus cricetus (taxid: 10034)

>sp|Q9ER41|TOR1B_MOUSE Torsin-1B OS=Mus musculus GN=Tor1b PE=2 SV=2

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 12  NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI 71
           N   L+  L++ + GQ LA   I  AL   F+N  ++ K L +SLHG  GTGKN+++  +
Sbjct: 64  NTSALKLDLEEKLFGQHLATEVILKALTG-FRNNKNSKKPLTLSLHGWAGTGKNFISQIV 122

Query: 72  VSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE 130
             +++     KG  S FVH F S +HFP+E  + +Y+ QL  WI  NV+AC  ++FIFDE
Sbjct: 123 AENLYP----KGLKSNFVHLFVSTLHFPHEQKIKVYQDQLQKWIRGNVSACGSSVFIFDE 178

Query: 131 VDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL----RKSECI 186
           +DK   G++D I PF+D++   + IS++  IF+FLSN+GG  I  T L+     RK E I
Sbjct: 179 MDKLHPGIIDAIKPFLDYYEQVDGISYRRAIFIFLSNAGGDLITKTALDFWRAGRKREEI 238

Query: 187 EF 188
           + 
Sbjct: 239 QL 240

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins.

Mus musculus (taxid: 10090)

>sp|Q9ER39|TOR1A_MOUSE Torsin-1A OS=Mus musculus GN=Tor1a PE=1 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 8   IQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYV 67
           ++S +   L++ L   + GQ LA   I  A+     N     K L +SLHG  GTGKN+ 
Sbjct: 54  MRSLSREALQKDLDNKLFGQHLAKKVILNAVSGFLSNP-KPKKPLTLSLHGWTGTGKNFA 112

Query: 68  TDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 127
           +  I  +I   Y+    S +VH F + +HFP+ ++++ Y+ QL  WI  NV+AC R+IFI
Sbjct: 113 SKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITQYKDQLQMWIRGNVSACARSIFI 169

Query: 128 FDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
           FDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+  KS
Sbjct: 170 FDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALDFWKS 225

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.

Mus musculus (taxid: 10090)

>sp|Q60HG2|TOR1A_MACFA Torsin-1A OS=Macaca fascicularis GN=TOR1A PE=2 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 6/183 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C  K  +S +   L++ L   + GQ LA   I  A+   F N     K L +SLHG  
Sbjct: 48  ECCGQK--RSLSREALQKDLDNKLFGQHLAKKIILNAVFG-FINNPKPKKPLTLSLHGWT 104

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+A
Sbjct: 105 GTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSA 161

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C R+IFIFDE+DK   GL+D I PF+D++ + + +S+Q  IF+FLSN+G   I +  L+ 
Sbjct: 162 CARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAIFIFLSNAGAERITDVALDF 221

Query: 181 RKS 183
            +S
Sbjct: 222 WRS 224

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins (By similarity). In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3, leaving nuclear pores and SUN1 unchanged.

Macaca fascicularis (taxid: 9541)

>sp|O14656|TOR1A_HUMAN Torsin-1A OS=Homo sapiens GN=TOR1A PE=1 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 111/183 (60%), Gaps = 6/183 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C  K  +S +   L++ L  ++ GQ LA   I  A+   F N     K L +SLHG  
Sbjct: 48  ECCGQK--RSLSREALQKDLDDNLFGQHLAKKIILNAVFG-FINNPKPKKPLTLSLHGWT 104

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+A
Sbjct: 105 GTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSA 161

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C R+IFIFDE+DK   GL+D I PF+D++ + + +S+Q  +F+FLSN+G   I +  L+ 
Sbjct: 162 CARSIFIFDEMDKMHAGLIDAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVALDF 221

Query: 181 RKS 183
            +S
Sbjct: 222 WRS 224

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins. In the nucleus, displaces the nuclear membrane proteins SUN2, SYNE2 and nesprin-3/C14orf49, leaving nuclear pores and SUN1 unchanged.

Homo sapiens (taxid: 9606)

>sp|O14657|TOR1B_HUMAN Torsin-1B OS=Homo sapiens GN=TOR1B PE=1 SV=2

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 12/193 (6%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C ++  +  N   L+  L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct: 55  ECCREE--RPLNASALKLDLEEKLFGQHLATEVIFKALTG-FRNNKNPKKPLTLSLHGWA 111

Query: 61  GTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
           GTGKN+V+  +  ++      KG  S FVH F S +HFP+E  + LY+ QL  WI  NV+
Sbjct: 112 GTGKNFVSQIVAENLHP----KGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNVS 167

Query: 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           AC  ++FIFDE+DK   G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct: 168 ACANSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKTALD 227

Query: 180 L----RKSECIEF 188
                RK E I+ 
Sbjct: 228 FWRAGRKREDIQL 240

May serve as a molecular chaperone assisting in the proper folding of secreted and/or membrane proteins.

Homo sapiens (taxid: 9606)

>sp|A4FUH1|TOR2A_BOVIN Torsin-2A OS=Bos taurus GN=TOR2A PE=2 SV=1

 Score =  130 bits (328), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 4/168 (2%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
           LE  L QH+ GQ LA S +  ALK   Q+    TK L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLAQHLAGQHLARSLVVKALKAFLQDPA-PTKPLVLSLHGWTGTGKSYVSSLLAHYL 110

Query: 76  FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 135
           F+   D   S  VH F+  IHFP+ +H+  Y+  L +W+  N+T C R++F+FDE+DK  
Sbjct: 111 FR---DGLRSPHVHHFSPVIHFPHPSHLERYKKDLKSWVQGNLTVCSRSLFLFDEMDKLA 167

Query: 136 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLIEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVVLEAWRS 215

Bos taurus (taxid: 9913)

>sp|Q8R1J9|TOR2A_MOUSE Torsin-2A OS=Mus musculus GN=Tor2a PE=2 SV=1

 Score =  130 bits (327), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
           LE  L QH+ GQ LA + +  +LK   Q+    +K L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLAQHLAGQHLAKALVVKSLKAFVQDPA-PSKPLVLSLHGWTGTGKSYVSSLLAQHL 110

Query: 76  FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 135
           F+   D   S  VH F+  IHFP+ +    Y+ +L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FR---DGLRSPHVHHFSPIIHFPHPSRTEQYKKELKSWVQGNLTACGRSLFLFDEMDKLP 167

Query: 136 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLQPFLGPSWVVYGTNYRKAIFIFISNAGGEQINQVALEAWRS 215

Mus musculus (taxid: 10090)

>sp|Q5JU69|TOR2A_HUMAN Torsin-2A OS=Homo sapiens GN=TOR2A PE=2 SV=1

 Score =  129 bits (325), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 4/168 (2%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
           LE  L QH+ GQ LA + +  ALK  F      TK L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLAQHLAGQHLAKALVVKALKA-FVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYL 110

Query: 76  FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 135
           F+       S  VH F+  +HFP+ +H+  Y+  L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FQ---GGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMP 167

Query: 136 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGKQINQVALEAWRS 215

Homo sapiens (taxid: 9606)

>sp|Q6AYR4|TOR2A_RAT Torsin-2A OS=Rattus norvegicus GN=Tor2a PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
           LE  L +H+ GQ LA + +  +LK   Q+    +K L +SLHG  GTGK+YV+  +   +
Sbjct: 52  LECDLARHLAGQHLAKALVVKSLKAFVQDPA-PSKPLVLSLHGWTGTGKSYVSSLLAQYL 110

Query: 76  FKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP 135
           F+       S  VH F+  IHFP+ +H   Y+ +L +W+  N+TAC R++F+FDE+DK P
Sbjct: 111 FR---GGLRSPHVHHFSPIIHFPHPSHTEQYKNELKSWVQGNLTACGRSLFLFDEMDKLP 167

Query: 136 KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
            GL++V+ PF+    V    +++  IF+F+SN+GG +I    LE  +S
Sbjct: 168 PGLMEVLKPFLGPSWVVYGTNYRKAIFIFISNTGGEQINQVALEAWRS 215

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
91076772	341	PREDICTED: similar to Torsin family prot	0.905	0.536	0.406	1e-34
443708149	348	hypothetical protein CAPTEDRAFT_168452 [	0.826	0.479	0.433	2e-34
348570402	332	PREDICTED: torsin-1A-like [Cavia porcell	0.876	0.533	0.415	1e-32
324518625	296	Torsin-1B [Ascaris suum]	0.782	0.533	0.451	1e-32
194033707	336	PREDICTED: torsin-1B-like [Sus scrofa]	0.871	0.523	0.413	1e-31
410979366	327	PREDICTED: torsin-1B [Felis catus]	0.896	0.553	0.409	2e-31
297480795	309	PREDICTED: torsin-1B [Bos taurus] gi|296	0.900	0.588	0.406	2e-31
344271670	336	PREDICTED: torsin-1B-like [Loxodonta afr	0.841	0.505	0.420	6e-31
291244635	370	PREDICTED: torsin family 1, member B (to	0.861	0.470	0.396	6e-31
338720334	343	PREDICTED: torsin-1B-like [Equus caballu	0.896	0.527	0.409	7e-31

>gi|91076772|ref|XP_973777.1| PREDICTED: similar to Torsin family protein [Tribolium castaneum] gi|270001920|gb|EEZ98367.1| hypothetical protein TcasGA2_TC000824 [Tribolium castaneum]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 118/187 (63%), Gaps = 4/187 (2%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C++  I + +   LE+ LK+H++GQ L +  +  AL++H+ + +   KAL +S HG P
Sbjct: 46  ECCSEHSIHA-DFDGLEDALKKHIYGQHLVLDIVTNALRSHWADNHKPQKALTLSFHGWP 104

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           G+GKNYVT FIV +++K Y  K  S+FVH F  R+HF +EN V  Y+  L  WI  N T 
Sbjct: 105 GSGKNYVTKFIVENMYK-YGSK--SKFVHHFIGRMHFSSENKVKEYQENLQEWIKGNTTN 161

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C + +FIFDEVDK P  +L++I P ID+    + + +++ +F+FLSN+G   I    LE+
Sbjct: 162 CGKQLFIFDEVDKMPSRVLNIIKPMIDYRDDVDGVDYRDCVFIFLSNTGADLINEHVLEM 221

Query: 181 RKSECIE 187
            K + ++
Sbjct: 222 WKEDGVK 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443708149|gb|ELU03404.1| hypothetical protein CAPTEDRAFT_168452 [Capitella teleta]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 6/173 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E+C D +++  + + L+  L   +HGQ L I ++  A++ H   R+  +KAL +S HG  
Sbjct: 63  ESCDDNWLKK-DTQGLKNDLSTRLHGQHLVIENVVKAIQAH--KRHLPSKALVMSFHGWT 119

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           G GKNYV  FI   +   Y     S+FVH F +  HFP+ + +  Y+ Q+ +WI  N+TA
Sbjct: 120 GCGKNYVGRFIAEHL---YHQGMKSKFVHLFVATHHFPHASRIETYKDQVRDWIKGNITA 176

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI 173
           C +++FIFDEVDK P GLLD+I+PFIDHH   N + ++++IFLFLSN+GG  I
Sbjct: 177 CPQSMFIFDEVDKMPPGLLDIILPFIDHHEEINGVDYRHSIFLFLSNTGGNLI 229

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|348570402|ref|XP_003470986.1| PREDICTED: torsin-1A-like [Cavia porcellus]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 6/183 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C  +  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG  
Sbjct: 49  ECCGQR--RSLSREALQKDLDNRLFGQHLAKKVILNAVTGFLSNP-KPKKPLTLSLHGWT 105

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++V+LY+ QL  WI  NV+A
Sbjct: 106 GTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHASNVTLYKDQLQLWIRGNVSA 162

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C R+IFIFDE+DK P GL+D I PF+D++ V +++S+Q  IF+FLSN+G   IM+  L+ 
Sbjct: 163 CARSIFIFDEMDKMPAGLIDAIKPFLDYYDVVDEVSYQRAIFIFLSNAGAERIMDVALDF 222

Query: 181 RKS 183
            +S
Sbjct: 223 WRS 225

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324518625|gb|ADY47157.1| Torsin-1B [Ascaris suum]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 102/164 (62%), Gaps = 6/164 (3%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
           L   ++Q ++GQ LA   +  AL++HF N  +  KAL IS HG  G GKNY+T  I  ++
Sbjct: 6   LRRTMRQRLYGQHLAQETVLPALQSHFNNE-NPKKALVISFHGWTGCGKNYLTSMIAENM 64

Query: 76  FKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134
           FK    KG  S +VH F S +HF N N ++ Y+  L  WI  NV+ C+R++FIFDEVDK 
Sbjct: 65  FK----KGMKSEYVHLFISTLHFANPNEIATYQQNLREWIHGNVSLCERSLFIFDEVDKM 120

Query: 135 PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL 178
           P  ++D I PFIDH+     + ++ +IF+FLSNSGG EI    L
Sbjct: 121 PPKVMDAIKPFIDHYDNLEGVDYRKSIFIFLSNSGGNEITEKTL 164

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|194033707|ref|XP_001929298.1| PREDICTED: torsin-1B-like [Sus scrofa]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 8/184 (4%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C ++  Q  N    + +L++ + GQ LA   +  AL   F+N  +  KAL +SLHG  
Sbjct: 55  ECCREE--QPLNASAFKLELEERLFGQHLATEVLLKALTG-FRNNKNPKKALTLSLHGWA 111

Query: 61  GTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
           GTGKN+V+  +  ++ +    KG  S FVH F S +HFP+E HV LY+ QL  WI  NV+
Sbjct: 112 GTGKNFVSQIVAENLHR----KGLKSNFVHLFVSTLHFPHEQHVKLYQDQLQRWIRGNVS 167

Query: 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           AC  ++FIFDE+DK   GL+D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct: 168 ACANSVFIFDEMDKLHPGLIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALD 227

Query: 180 LRKS 183
             ++
Sbjct: 228 FWRA 231

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410979366|ref|XP_003996056.1| PREDICTED: torsin-1B [Felis catus]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 12/193 (6%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C ++  Q  N   L+ +L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct: 46  ECCREE--QRLNASALKLELEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWA 102

Query: 61  GTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
           GTGKN+V+  +  ++      KG  S FVH F S +HFP+E H+ LY+ QL  WI  NV+
Sbjct: 103 GTGKNFVSQIVAENL----HSKGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQGWIRGNVS 158

Query: 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           AC  ++FIFDE+DK   G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct: 159 ACASSVFIFDEMDKLHPGVIDAIKPFLDYYEQVDGVSYRKAIFMFLSNAGGDLITKTALD 218

Query: 180 L----RKSECIEF 188
                RK E I+ 
Sbjct: 219 FWRAGRKREDIQL 231

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297480795|ref|XP_002691721.1| PREDICTED: torsin-1B [Bos taurus] gi|296482155|tpg|DAA24270.1| TPA: torsin family 1, member B (torsin B)-like [Bos taurus]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 10/192 (5%)

Query: 2   ACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPG 61
           +C  K       R L++ L++ + GQ LA   I  AL   F+N  +  K L +SLHG  G
Sbjct: 27  SCDPKGCALPRSRALKQDLEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWAG 85

Query: 62  TGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           TGKN+V+  +  ++      KG  S FVH F S +HFP+E H+ LY+ QL  WI  NV+A
Sbjct: 86  TGKNFVSQIVAENLHP----KGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQRWIRGNVSA 141

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
           C  ++FIFDE+DK   G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+ 
Sbjct: 142 CAGSVFIFDEMDKLHPGVIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALDF 201

Query: 181 ----RKSECIEF 188
               RK E I+ 
Sbjct: 202 WRAGRKREDIQL 213

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344271670|ref|XP_003407660.1| PREDICTED: torsin-1B-like [Loxodonta africana]

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 6/176 (3%)

Query: 9   QSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT 68
           Q  N   L+  L++ + GQ LA   I  AL   F+N  +  KAL +SLHG  GTGKN+V+
Sbjct: 61  QPLNASALKLDLEEKLFGQHLATEVILKALIG-FKNNKNPKKALTLSLHGWAGTGKNFVS 119

Query: 69  DFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 127
             +  +++     KG  S FVH F S +HFP+E  + LY+ QL NWI  NV+AC  ++FI
Sbjct: 120 QIVAENLYS----KGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQNWIRGNVSACAGSVFI 175

Query: 128 FDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKS 183
           FDE+DK   GL+D I PF+D++   + +S++  IF+FLSN+GG  I    L+  ++
Sbjct: 176 FDEMDKLHPGLIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKMALDFWRA 231

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291244635|ref|XP_002742201.1| PREDICTED: torsin family 1, member B (torsin B)-like [Saccoglossus kowalevskii]

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 5/179 (2%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E CT+K+I  +N+  L   L+Q V+GQ L  + +   ++ H  N  + TK+L +S HG  
Sbjct: 65  ECCTEKYI-PANITSLSMDLQQKVYGQHLVQTVVLNTIQGHVTNP-NPTKSLVLSFHGWT 122

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           G GKN+V+  I  +I+    D   S++VH F + +HFP++  +  Y+ QL +WI  NVT 
Sbjct: 123 GGGKNFVSRIIADNIYMNGMD---SKYVHLFVATLHFPHKKDIDHYKDQLISWIKGNVTQ 179

Query: 121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           C R +FIFDE+DK   GL+DV+ PF+DH+   + + ++  IF+FLSN+ G +I    LE
Sbjct: 180 CQRQLFIFDEMDKMHPGLIDVLKPFLDHYPEIDGVDYRKNIFIFLSNTAGNDITVKTLE 238

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|338720334|ref|XP_001499689.2| PREDICTED: torsin-1B-like [Equus caballus]

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 114/193 (59%), Gaps = 12/193 (6%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C ++  Q  N   L+  L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct: 55  ECCREE--QPLNASALKLDLEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWA 111

Query: 61  GTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
           GTGKN+V+  +  ++      KG  S+FVH F S +HFP+E  + LY+ QL  WI  NV+
Sbjct: 112 GTGKNFVSQIVAENL----HSKGLKSKFVHLFVSTLHFPHEQQIKLYQDQLQKWIRGNVS 167

Query: 120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           AC  ++FIFDE+DK   G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct: 168 ACASSLFIFDEMDKLHPGVIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKTALD 227

Query: 180 L----RKSECIEF 188
                RK E IE 
Sbjct: 228 FWRAGRKREDIEL 240

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
UNIPROTKB|F1S0Y7	336	TOR1B "Uncharacterized protein	0.851	0.511	0.422	2.5e-33
UNIPROTKB|F1MBM5	270	TOR1B "Uncharacterized protein	0.826	0.618	0.423	1.3e-31
RGD|1308431	336	Tor1b "torsin family 1, member	0.891	0.535	0.406	1.3e-31
UNIPROTKB|F1PD54	342	TOR1B "Uncharacterized protein	0.891	0.526	0.406	1.6e-31
MGI|MGI:1353605	336	Tor1b "torsin family 1, member	0.891	0.535	0.395	1.6e-31
UNIPROTKB|F1P2B1	344	TOR1A "Uncharacterized protein	0.861	0.505	0.396	2.6e-31
UNIPROTKB|O14657	336	TOR1B "Torsin-1B" [Homo sapien	0.891	0.535	0.401	3.3e-31
UNIPROTKB|D4A7J2	336	Tor1b "Protein Tor1b" [Rattus	0.891	0.535	0.401	5.4e-31
UNIPROTKB|Q68G38	333	Dyt1 "Dystonia 1" [Rattus norv	0.876	0.531	0.398	1.4e-30
UNIPROTKB|A5PK75	333	TOR1A "Uncharacterized protein	0.876	0.531	0.398	3e-30

UNIPROTKB|F1S0Y7 TOR1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 76/180 (42%), Positives = 111/180 (61%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  Q  N    + +L++ + GQ LA   +  AL   F+N  +  KAL +SLHG  
Sbjct:    55 ECCREE--QPLNASAFKLELEERLFGQHLATEVLLKALTG-FRNNKNPKKALTLSLHGWA 111

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+V+  +  ++ +    KG  S FVH F S +HFP+E HV LY+ QL  WI  NV+
Sbjct:   112 GTGKNFVSQIVAENLHR----KGLKSNFVHLFVSTLHFPHEQHVKLYQDQLQRWIRGNVS 167

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   GL+D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct:   168 ACANSVFIFDEMDKLHPGLIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALD 227

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1MBM5 TOR1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/177 (42%), Positives = 109/177 (61%)

Query:    16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI 75
             L++ L++ + GQ LA   I  AL   F+N  +  K L +SLHG  GTGKN+V+  +  ++
Sbjct:     2 LKQDLEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENL 60

Query:    76 FKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134
                   KG  S FVH F S +HFP+E H+ LY+ QL  WI  NV+AC  ++FIFDE+DK 
Sbjct:    61 HP----KGLKSNFVHLFVSTLHFPHEQHIKLYQDQLQRWIRGNVSACAGSVFIFDEMDKL 116

Query:   135 PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL----RKSECIE 187
               G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+     RK E I+
Sbjct:   117 HPGVIDAIKPFLDYYEQIDGVSYRKAIFIFLSNAGGDLITKTALDFWRAGRKREDIQ 173

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1308431 Tor1b "torsin family 1, member B" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 78/192 (40%), Positives = 114/192 (59%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  +  N   L+  L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct:    55 ECCHEE--RPLNTSALKLDLEEKLFGQHLATEVILKALTG-FRNNKNPKKPLTLSLHGWA 111

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+V+  +  +++     KG  S FVH F S +HFP+E  + LY+ QL  WI  NV+
Sbjct:   112 GTGKNFVSQIVAENLYP----KGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNVS 167

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   G++D I PF+D++   + IS++  IF+FLSN+GG  I  T L+
Sbjct:   168 ACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGISYRKAIFIFLSNAGGDLITKTTLD 227

Query:   180 L----RKSECIE 187
                  RK E I+
Sbjct:   228 FWRAGRKREEIQ 239

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA;ISO

GO:0071763 "nuclear membrane organization" evidence=IEA;ISO

UNIPROTKB|F1PD54 TOR1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 78/192 (40%), Positives = 113/192 (58%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  Q  N   L+ +L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct:    61 ECCLEE--QRLNASALKLELEEKLFGQHLATEVILKALTG-FKNNKNPKKPLTLSLHGWA 117

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+V+  +  ++      KG  S FVH F S +HFP+E  + LY+ QL  WI  NV+
Sbjct:   118 GTGKNFVSQIVAENLHS----KGLKSNFVHLFVSTLHFPHEQQIKLYQDQLQAWIRGNVS 173

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   G++D I PF+D++   + +SF+  IF+FLSN+GG  I    L+
Sbjct:   174 ACASSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSFRKAIFIFLSNAGGDLITKIALD 233

Query:   180 L----RKSECIE 187
                  RK E I+
Sbjct:   234 FWRAGRKREDIQ 245

GO:0005524 "ATP binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:1353605 Tor1b "torsin family 1, member B" [Mus musculus (taxid:10090)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 76/192 (39%), Positives = 115/192 (59%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  +  N   L+  L++ + GQ LA   I  AL   F+N  ++ K L +SLHG  
Sbjct:    55 ECCHEE--RPLNTSALKLDLEEKLFGQHLATEVILKALTG-FRNNKNSKKPLTLSLHGWA 111

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+++  +  +++     KG  S FVH F S +HFP+E  + +Y+ QL  WI  NV+
Sbjct:   112 GTGKNFISQIVAENLYP----KGLKSNFVHLFVSTLHFPHEQKIKVYQDQLQKWIRGNVS 167

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   G++D I PF+D++   + IS++  IF+FLSN+GG  I  T L+
Sbjct:   168 ACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGISYRRAIFIFLSNAGGDLITKTALD 227

Query:   180 L----RKSECIE 187
                  RK E I+
Sbjct:   228 FWRAGRKREEIQ 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=ISO;IDA

GO:0071763 "nuclear membrane organization" evidence=IGI

UNIPROTKB|F1P2B1 TOR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 71/179 (39%), Positives = 108/179 (60%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C  +  Q      L+E L + + GQ L    +  A++    N     K LA+SLHG  
Sbjct:    59 ECCLQRHEQRV-AAALQESLDRRLFGQHLVSKVVVRAVRGFLSNAQAK-KPLALSLHGWT 116

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
             GTGKN+V+  I  SI+KR      S +VH+F + +HFP+ + ++LY+ QL +WI  NV+ 
Sbjct:   117 GTGKNFVSKIIAESIYKRGLK---SNYVHQFVATLHFPHAHSINLYKDQLQSWIRGNVSI 173

Query:   121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             C R+IFIFDE+DK   GL+D I PF+D++ + + +S++  IF+FLSN+G  +I    L+
Sbjct:   174 CPRSIFIFDEMDKMHAGLIDAIKPFLDYYELLDGVSYRQAIFIFLSNAGAEKITEVALD 232

GO:0005524 "ATP binding" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

UNIPROTKB|O14657 TOR1B "Torsin-1B" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 77/192 (40%), Positives = 113/192 (58%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  +  N   L+  L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct:    55 ECCREE--RPLNASALKLDLEEKLFGQHLATEVIFKALTG-FRNNKNPKKPLTLSLHGWA 111

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+V+  +  ++      KG  S FVH F S +HFP+E  + LY+ QL  WI  NV+
Sbjct:   112 GTGKNFVSQIVAENLHP----KGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNVS 167

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   G++D I PF+D++   + +S++  IF+FLSN+GG  I  T L+
Sbjct:   168 ACANSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKTALD 227

Query:   180 L----RKSECIE 187
                  RK E I+
Sbjct:   228 FWRAGRKREDIQ 239

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IDA

UNIPROTKB|D4A7J2 Tor1b "Protein Tor1b" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 77/192 (40%), Positives = 113/192 (58%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C ++  +  N   L+  L++ + GQ LA   I  AL   F+N  +  K L +SLHG  
Sbjct:    55 ECCHEE--RPLNTSALKLDLEEKLFGQHLATEVILKALTG-FRNNKNPKKPLTLSLHGWA 111

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT 119
             GTGKN+V+  +  +++     KG  S FVH F S +HFP+E  + L+  QL  WI  NV+
Sbjct:   112 GTGKNFVSQIVAENLYP----KGLKSNFVHLFVSTLHFPHEQKIKLFTDQLQKWIRGNVS 167

Query:   120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
             AC  ++FIFDE+DK   G++D I PF+D++   + IS++  IF+FLSN+GG  I  T L+
Sbjct:   168 ACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGISYRKAIFIFLSNAGGDLITKTTLD 227

Query:   180 L----RKSECIE 187
                  RK E I+
Sbjct:   228 FWRAGRKREEIQ 239

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

UNIPROTKB|Q68G38 Dyt1 "Dystonia 1" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 73/183 (39%), Positives = 109/183 (59%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C  K  +S +   L++ L   + GQ LA   I  A+     N     K L +SLHG  
Sbjct:    49 ECCGQK--RSLSREALQKDLDNKLFGQHLAKRVILNAVSGFLSNPKPK-KPLTLSLHGWT 105

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
             GTGKN+ +  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL  WI  NV+A
Sbjct:   106 GTGKNFASKIIAENI---YEGGLNSDYVHLFVATLHFPHASNITLYKDQLQMWIRGNVSA 162

Query:   121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
             C R+IFIFDE+DK   GL+D I PF+D++ V +++S+Q  IF+FLSN+G   I +  L+ 
Sbjct:   163 CARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNAGAERITDVALDF 222

Query:   181 RKS 183
              +S
Sbjct:   223 WRS 225

GO:0005524 "ATP binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0071763 "nuclear membrane organization" evidence=IEA

UNIPROTKB|A5PK75 TOR1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 73/183 (39%), Positives = 110/183 (60%)

Query:     1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
             E C+ K  +S +   L++ L   + GQ LA   I  AL     N     K L +SLHG  
Sbjct:    49 ECCSPK--RSLSREALQKDLDSKLFGQHLAKKVILNALSGFISNPKPK-KPLTLSLHGWT 105

Query:    61 GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
             GTGKN+V+  I  +I   Y+    S +VH F + +HFP+ ++++LY+ QL +WI  NV+A
Sbjct:   106 GTGKNFVSKIIAENI---YEGGLNSDYVHLFVATLHFPHISNITLYKDQLQSWIRGNVSA 162

Query:   121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLEL 180
             C R+IFIFDE+DK   GL+D I P++D++   + +S+Q  IF+FLSN+G   I +  L+ 
Sbjct:   163 CARSIFIFDEMDKMHAGLIDAIKPYLDYYDNLDGVSYQKAIFIFLSNAGAERITDVALDF 222

Query:   181 RKS 183
              +S
Sbjct:   223 WRS 225

GO:0071763 "nuclear membrane organization" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
pfam06309	127	pfam06309, Torsin, Torsin	1e-35

>gnl|CDD|148114 pfam06309, Torsin, Torsin

 Score =  121 bits (306), Expect = 1e-35
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 5/128 (3%)

Query: 1   EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLP 60
           E C D  I S N   LE  L + + GQ L    +  ++K H++N     K L +S HG  
Sbjct: 5   ECCGDCRI-SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENP-KPRKPLVLSFHGWT 62

Query: 61  GTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA 120
           GTGKN+V + I  ++   Y+D   S +VH F +  HFP+  +V LY+++L N I   + A
Sbjct: 63  GTGKNFVAEIIADNL---YRDGLRSPYVHHFVATNHFPHPKYVELYKVELKNQIRGTLRA 119

Query: 121 CDRAIFIF 128
           C R+IFIF
Sbjct: 120 CQRSIFIF 127

This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG2170|consensus	344		100.0
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	100.0
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	99.95
CHL00095	821	clpC Clp protease ATP binding subunit	99.94
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.93
KOG1051|consensus	898		99.93
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.93
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.93
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.92
PRK10865	857	protein disaggregation chaperone; Provisional	99.91
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.84
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.8
KOG0989|consensus	346		99.78
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.76
CHL00181	287	cbbX CbbX; Provisional	99.76
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.74
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.72
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.71
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.7
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.7
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.7
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.68
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.68
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.68
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.67
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.67
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.67
PLN03025	319	replication factor C subunit; Provisional	99.67
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.67
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.66
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.66
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.65
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.64
KOG0991|consensus	333		99.63
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.63
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.63
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.62
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.62
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.62
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.61
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.61
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.61
KOG2004|consensus	906		99.61
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.6
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.6
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.59
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.59
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.59
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.59
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.58
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.58
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.58
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.58
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.58
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.57
KOG0734|consensus	752		99.57
PRK13531	498	regulatory ATPase RavA; Provisional	99.57
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.56
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.56
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.55
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.55
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.55
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.55
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.54
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.53
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.52
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.51
CHL00195	489	ycf46 Ycf46; Provisional	99.5
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.49
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.49
PRK12402	337	replication factor C small subunit 2; Reviewed	99.49
PRK12377	248	putative replication protein; Provisional	99.49
PHA02544	316	44 clamp loader, small subunit; Provisional	99.49
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.49
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.48
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.47
PF00004	132	AAA: ATPase family associated with various cellula	99.47
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.47
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.47
PRK04195	482	replication factor C large subunit; Provisional	99.46
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.45
KOG0730|consensus	693		99.45
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.45
COG0714	329	MoxR-like ATPases [General function prediction onl	99.44
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.44
KOG0733|consensus	802		99.44
KOG0739|consensus	439		99.44
PRK08116	268	hypothetical protein; Validated	99.44
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.43
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.43
KOG2028|consensus	554		99.43
KOG0733|consensus	802		99.43
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.43
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.42
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.42
PRK13342	413	recombination factor protein RarA; Reviewed	99.41
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.41
KOG0738|consensus	491		99.4
PF07726	131	AAA_3: ATPase family associated with various cellu	99.4
PHA02244	383	ATPase-like protein	99.4
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.39
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.39
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.38
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.38
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.38
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.38
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.38
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.38
KOG0731|consensus	774		99.38
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.37
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	99.37
CHL00176	638	ftsH cell division protein; Validated	99.36
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.36
KOG0736|consensus	953		99.36
COG2204	464	AtoC Response regulator containing CheY-like recei	99.34
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.34
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.33
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.33
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.33
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.32
PRK13341	725	recombination factor protein RarA/unknown domain f	99.31
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.31
PRK07952	244	DNA replication protein DnaC; Validated	99.31
PRK08939	306	primosomal protein DnaI; Reviewed	99.3
PRK08181	269	transposase; Validated	99.3
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.3
KOG0727|consensus	408		99.3
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.3
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.3
KOG0745|consensus	564		99.3
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.29
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.29
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.28
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.28
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.27
PRK06526	254	transposase; Provisional	99.27
PRK06893	229	DNA replication initiation factor; Validated	99.27
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.26
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.26
COG1484	254	DnaC DNA replication protein [DNA replication, rec	99.26
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.26
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.25
PRK06835	329	DNA replication protein DnaC; Validated	99.25
KOG0744|consensus	423		99.24
PRK10865	857	protein disaggregation chaperone; Provisional	99.24
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.24
PRK08727	233	hypothetical protein; Validated	99.24
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.24
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.23
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.22
KOG0729|consensus	435		99.21
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.21
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.21
PRK08084	235	DNA replication initiation factor; Provisional	99.21
KOG0726|consensus	440		99.2
KOG0737|consensus	386		99.2
PRK06921	266	hypothetical protein; Provisional	99.18
KOG0990|consensus	360		99.18
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.17
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.17
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.16
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.15
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.14
KOG0728|consensus	404		99.14
CHL00095	821	clpC Clp protease ATP binding subunit	99.13
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.13
KOG2035|consensus	351		99.13
KOG0735|consensus	952		99.13
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.12
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.12
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.12
KOG0742|consensus	630		99.11
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.11
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.11
KOG0651|consensus	388		99.09
CHL00206	2281	ycf2 Ycf2; Provisional	99.09
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.08
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.07
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.07
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.07
KOG0741|consensus	744		99.06
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.06
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.06
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.05
PRK09183	259	transposase/IS protein; Provisional	99.05
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.05
PRK05642	234	DNA replication initiation factor; Validated	99.04
smart00350	509	MCM minichromosome maintenance proteins.	99.03
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.03
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.03
PRK04132	846	replication factor C small subunit; Provisional	99.02
KOG0652|consensus	424		99.0
smart00382	148	AAA ATPases associated with a variety of cellular	98.99
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.99
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.99
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.98
KOG0743|consensus	457		98.97
PRK12422	445	chromosomal replication initiation protein; Provis	98.97
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.97
PRK09862	506	putative ATP-dependent protease; Provisional	98.96
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.95
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.95
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.94
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.93
PRK15115	444	response regulator GlrR; Provisional	98.92
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.91
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.91
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.9
KOG0732|consensus	1080		98.88
PRK06620	214	hypothetical protein; Validated	98.88
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.86
KOG0740|consensus	428		98.81
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.8
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.8
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.8
PRK06581	263	DNA polymerase III subunit delta'; Validated	98.78
PF13173	128	AAA_14: AAA domain	98.73
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.73
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.69
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.67
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.66
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.65
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.64
KOG0730|consensus	693		98.62
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.62
PRK09087	226	hypothetical protein; Validated	98.59
KOG0741|consensus	744		98.58
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.57
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.57
PHA02774	613	E1; Provisional	98.53
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.52
PRK04296	190	thymidine kinase; Provisional	98.48
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.47
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.47
KOG1969|consensus	877		98.47
PRK14974	336	cell division protein FtsY; Provisional	98.46
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.45
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.44
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.43
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.41
PRK15455	644	PrkA family serine protein kinase; Provisional	98.4
COG1485	367	Predicted ATPase [General function prediction only	98.4
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.39
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.36
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.36
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	98.34
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	98.34
KOG1970|consensus	634		98.33
PHA00729	226	NTP-binding motif containing protein	98.32
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.31
PRK10536	262	hypothetical protein; Provisional	98.3
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.29
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.27
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.19
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.19
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.18
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	98.18
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.17
PF05729	166	NACHT: NACHT domain	98.17
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	98.16
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.15
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.13
KOG0477|consensus	854		98.12
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.12
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.11
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.11
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.09
KOG0478|consensus	804		98.07
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.06
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.06
KOG1942|consensus	456		98.05
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.05
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.04
PRK10867	433	signal recognition particle protein; Provisional	98.03
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.02
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.02
PRK13765	637	ATP-dependent protease Lon; Provisional	98.01
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.01
KOG0735|consensus	952		98.01
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	98.0
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	97.98
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.98
PRK10416	318	signal recognition particle-docking protein FtsY;	97.98
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.97
KOG0480|consensus	764		97.94
KOG0736|consensus	953		97.94
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.93
KOG1514|consensus	767		97.93
TIGR00959	428	ffh signal recognition particle protein. This mode	97.93
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.92
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.89
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.88
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.87
PRK14527	191	adenylate kinase; Provisional	97.86
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.86
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.81
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.81
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.81
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.77
PRK00131	175	aroK shikimate kinase; Reviewed	97.77
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.76
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.75
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.75
PRK06067	234	flagellar accessory protein FlaH; Validated	97.74
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.74
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.72
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.72
PRK06696	223	uridine kinase; Validated	97.72
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.69
cd01128	249	rho_factor Transcription termination factor rho is	97.69
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	97.68
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.67
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.67
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.66
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.66
KOG2227|consensus	529		97.66
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.65
PRK08118	167	topology modulation protein; Reviewed	97.65
PRK06762	166	hypothetical protein; Provisional	97.64
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.64
PF13245	76	AAA_19: Part of AAA domain	97.62
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.61
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.61
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.61
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.6
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.59
PF06048	286	DUF927: Domain of unknown function (DUF927); Inter	97.59
PRK05541	176	adenylylsulfate kinase; Provisional	97.59
PRK05439	311	pantothenate kinase; Provisional	97.59
PRK13889	988	conjugal transfer relaxase TraA; Provisional	97.59
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.59
PRK08233	182	hypothetical protein; Provisional	97.59
PRK13695	174	putative NTPase; Provisional	97.58
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.58
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.58
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.58
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.58
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.57
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.57
PRK05480	209	uridine/cytidine kinase; Provisional	97.56
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.55
PRK03846	198	adenylylsulfate kinase; Provisional	97.55
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.55
PRK11823	446	DNA repair protein RadA; Provisional	97.55
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.55
PRK03839	180	putative kinase; Provisional	97.54
PF13479	213	AAA_24: AAA domain	97.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.54
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.53
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.53
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.53
PRK06547	172	hypothetical protein; Provisional	97.53
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.52
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.51
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	97.51
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.51
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.51
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.51
KOG0922|consensus	674		97.51
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.51
PTZ00202	550	tuzin; Provisional	97.5
PLN02200	234	adenylate kinase family protein	97.49
KOG2383|consensus	467		97.49
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.49
COG4178	604	ABC-type uncharacterized transport system, permeas	97.49
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.49
cd03246	173	ABCC_Protease_Secretion This family represents the	97.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.48
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.48
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.47
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.47
PRK07261	171	topology modulation protein; Provisional	97.46
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.46
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.45
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.45
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.44
TIGR00767	415	rho transcription termination factor Rho. Members	97.44
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.43
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.43
PRK14532	188	adenylate kinase; Provisional	97.42
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.42
PRK10875	615	recD exonuclease V subunit alpha; Provisional	97.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.4
PTZ00088	229	adenylate kinase 1; Provisional	97.4
PHA02624	647	large T antigen; Provisional	97.4
PRK13947	171	shikimate kinase; Provisional	97.39
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.39
PHA01747	425	putative ATP-dependent protease	97.39
PRK13826	1102	Dtr system oriT relaxase; Provisional	97.39
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.39
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.38
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	97.38
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.38
smart00487	201	DEXDc DEAD-like helicases superfamily.	97.38
PRK04040	188	adenylate kinase; Provisional	97.38
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.38
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.37
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.36
PRK14738	206	gmk guanylate kinase; Provisional	97.36
PRK14531	183	adenylate kinase; Provisional	97.36
PRK00625	173	shikimate kinase; Provisional	97.35
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.35
PRK14530	215	adenylate kinase; Provisional	97.34
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.34
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.33
KOG0479|consensus	818		97.33
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.32
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.31
PRK06217	183	hypothetical protein; Validated	97.31
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.3
PRK09354	349	recA recombinase A; Provisional	97.3
PRK07667	193	uridine kinase; Provisional	97.3
PRK02496	184	adk adenylate kinase; Provisional	97.29
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.29
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.29
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.29
PRK00889	175	adenylylsulfate kinase; Provisional	97.28
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.28
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	97.28
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	97.28
PRK13949	169	shikimate kinase; Provisional	97.28
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	97.28
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.27
PHA02530	300	pseT polynucleotide kinase; Provisional	97.27
PRK12338	319	hypothetical protein; Provisional	97.27
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.26
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.26
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.25
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.25
PRK12608	380	transcription termination factor Rho; Provisional	97.25
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.25
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	97.24
PRK14737	186	gmk guanylate kinase; Provisional	97.24
PRK10646	153	ADP-binding protein; Provisional	97.24
COG4098	441	comFA Superfamily II DNA/RNA helicase required for	97.23
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.23
PRK09376	416	rho transcription termination factor Rho; Provisio	97.23
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.23
PLN02840	421	tRNA dimethylallyltransferase	97.22
cd03239	178	ABC_SMC_head The structural maintenance of chromos	97.22
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.22
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	97.21
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.21
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.21
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.2
KOG3347|consensus	176		97.2
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.19
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.18
PRK14528	186	adenylate kinase; Provisional	97.18
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.16
TIGR00643	630	recG ATP-dependent DNA helicase RecG.	97.16
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.16
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.16
PRK00279	215	adk adenylate kinase; Reviewed	97.15
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.15
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.14
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.14
PRK00300	205	gmk guanylate kinase; Provisional	97.13
KOG3354|consensus	191		97.13
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.12
KOG0482|consensus	721		97.11
PRK05057	172	aroK shikimate kinase I; Reviewed	97.11
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.11
KOG2228|consensus	408		97.1
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.09
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.09
PRK13975	196	thymidylate kinase; Provisional	97.09
PLN02459	261	probable adenylate kinase	97.09
PRK04328	249	hypothetical protein; Provisional	97.09
PRK13946	184	shikimate kinase; Provisional	97.08
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.07
PRK13764	602	ATPase; Provisional	97.07
COG1061	442	SSL2 DNA or RNA helicases of superfamily II [Trans	97.06
PF01057	271	Parvo_NS1: Parvovirus non-structural protein NS1;	97.06
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.06
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.06
PRK14526	211	adenylate kinase; Provisional	97.06
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.05
PLN02748	468	tRNA dimethylallyltransferase	97.05
PTZ00301	210	uridine kinase; Provisional	97.05
PLN02674	244	adenylate kinase	97.04
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.03
KOG2680|consensus	454		97.02
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.02
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.02
PRK13948	182	shikimate kinase; Provisional	97.01
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	97.0
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	97.0
PRK03731	171	aroL shikimate kinase II; Reviewed	97.0
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	97.0

>KOG2170|consensus

Probab=100.00  E-value=7.5e-37  Score=241.32  Aligned_cols=194  Identities=38%  Similarity=0.655  Sum_probs=185.1

Q ss_pred             CCCcccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc
Q psy1695           1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK   80 (202)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~   80 (202)
                      |||. |..+.+|+..|+..|+..++||..|++.+..+++.++.+++ +++|+++-|+|++||||+++++.||+.++.   
T Consensus        62 ~cc~-d~~~~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~---  136 (344)
T KOG2170|consen   62 ECCI-DNDIRNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPLVLSFHGWTGTGKNYVAEIIAENLYR---  136 (344)
T ss_pred             HHcc-cccccccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCeEEEecCCCCCchhHHHHHHHHHHHh---
Confidence            5887 45578999999999999999999999999999999999888 999999999999999999999999999999   


Q ss_pred             CcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCce
Q psy1695          81 DKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNT  160 (202)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~  160 (202)
                      .|..+++++.+.+.++++++.++..|++++.+++.+.++.|+.+++||||+|||++..++.|.++++..+...+++++++
T Consensus       137 ~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frka  216 (344)
T KOG2170|consen  137 GGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKA  216 (344)
T ss_pred             ccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             EEEEeeCcChHHHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695         161 IFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYL  199 (202)
Q Consensus       161 ~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~  199 (202)
                      +|||.||.++++|.+..++++++|++|-+.+++.++.-|
T Consensus       217 IFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L  255 (344)
T KOG2170|consen  217 IFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPAL  255 (344)
T ss_pred             EEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHH
Confidence            999999999999999999999999999999999887654

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-34  Score=251.90  Aligned_cols=184  Identities=21%  Similarity=0.348  Sum_probs=155.8

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCc---Cccch
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRF   87 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~   87 (202)
                      .+..|++.|.+.|+||+.|++.+.+++++...+-.++++|.+ ++|.||+|||||.+|++||..|+..+..-   .+++|
T Consensus       481 kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy  560 (786)
T COG0542         481 KLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY  560 (786)
T ss_pred             HHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence            567899999999999999999999999997665555779985 99999999999999999999998731110   13344


Q ss_pred             hhhh-cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEE
Q psy1695          88 VHKF-NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIF  162 (202)
Q Consensus        88 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~  162 (202)
                      ...+ .+.+.+++|+|+| |.+  .+.+++++++.|++||+||||||++|+++|.|+|+||+|+++++    ++|+|+++
T Consensus       561 ~EkHsVSrLIGaPPGYVG-yee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI  637 (786)
T COG0542         561 MEKHSVSRLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII  637 (786)
T ss_pred             HHHHHHHHHhCCCCCCce-ecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence            4333 3566789999999 988  88999999999999999999999999999999999999999976    69999999


Q ss_pred             EEeeCcChHHHHHHH----------------HHHHHhhhHHHHhccchhHHH
Q psy1695         163 LFLSNSGGTEIMNTF----------------LELRKSECIEFIFQCQPLKVY  198 (202)
Q Consensus       163 Iltsn~~~~~i~~~~----------------~~~~~~~~~r~~~~~~~~~~~  198 (202)
                      |||||.+.+.+.+..                ..+...++|+|+.|++.+.+|
T Consensus       638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F  689 (786)
T COG0542         638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPF  689 (786)
T ss_pred             EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEec
Confidence            999999988766432                247889999999999976554

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=99.95  E-value=2.6e-27  Score=166.90  Aligned_cols=123  Identities=40%  Similarity=0.762  Sum_probs=116.9

Q ss_pred             CCCcccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc
Q psy1695           1 EACTDKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK   80 (202)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~   80 (202)
                      |||.+.+ |++|+..|+..|++.++||+.|.+.+.+++..++.+++ +++|+++.|+||||||||++++.||+.++.   
T Consensus         5 eCC~~~~-i~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~-p~KpLVlSfHG~tGtGKn~v~~liA~~ly~---   79 (127)
T PF06309_consen    5 ECCDDRW-IKYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPN-PRKPLVLSFHGWTGTGKNFVSRLIAEHLYK---   79 (127)
T ss_pred             ccCCCcc-CCCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC-CCCCEEEEeecCCCCcHHHHHHHHHHHHHh---
Confidence            7999776 99999999999999999999999999999999998876 889999999999999999999999999999   


Q ss_pred             CcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695          81 DKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  128 (202)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii  128 (202)
                      .|..+++++.+.+..+++....+..|.+++..++.+.+..|+.+++||
T Consensus        80 ~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF  127 (127)
T PF06309_consen   80 SGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF  127 (127)
T ss_pred             cccCCCceeeecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence            888999999999999999999999999999999999999999999875

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.94  E-value=2.4e-26  Score=209.60  Aligned_cols=176  Identities=20%  Similarity=0.307  Sum_probs=138.6

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++.+|++.|++.|+||+.|++.+..++.....+-..+++|.+ ++|+||+|||||++|+++|+.+++   .  ...++++
T Consensus       499 ~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~--~~~~~~~  573 (821)
T CHL00095        499 KLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---S--EDAMIRL  573 (821)
T ss_pred             HHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---C--ccceEEE
Confidence            467899999999999999999999999875443222568875 899999999999999999999987   3  2334444


Q ss_pred             hcccc---------cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~~~---------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++.+         .++++++++ |.+  .+.+.+.+..+|++||+|||+|++++.+++.|+++|++|++++.    +++
T Consensus       574 d~s~~~~~~~~~~l~g~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~  650 (821)
T CHL00095        574 DMSEYMEKHTVSKLIGSPPGYVG-YNE--GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF  650 (821)
T ss_pred             EchhccccccHHHhcCCCCcccC-cCc--cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEec
Confidence            44433         345567776 554  56678888999999999999999999999999999999988754    589


Q ss_pred             CceEEEEeeCcChHHHHHH-------------------------HHHHHHhhhHHHHhccchh
Q psy1695         158 QNTIFLFLSNSGGTEIMNT-------------------------FLELRKSECIEFIFQCQPL  195 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~-------------------------~~~~~~~~~~r~~~~~~~~  195 (202)
                      ++++||+|||.+.+.+...                         .-.....++|+|+.|++.+
T Consensus       651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~i  713 (821)
T CHL00095        651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEI  713 (821)
T ss_pred             CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeE
Confidence            9999999999998755421                         0123556888898888653

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.93  E-value=7.5e-26  Score=206.10  Aligned_cols=174  Identities=23%  Similarity=0.287  Sum_probs=138.4

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++..|++.|++.|+||+.|++.+.+++.....+-..+++|++ ++|+||+|||||++|+++|+.++.   .  ...++.+
T Consensus       556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~--~~~~~~~  630 (852)
T TIGR03345       556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---G--EQNLITI  630 (852)
T ss_pred             HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---C--CcceEEE
Confidence            567899999999999999999999999986544332568885 899999999999999999999976   2  1233334


Q ss_pred             hc---------ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FN---------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~---------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      ++         +.+.++++++++ |.+  .+.+.+.+..+|++||+|||++++++.+++.|++++++|.++++    +++
T Consensus       631 dmse~~~~~~~~~l~g~~~gyvg-~~~--~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~  707 (852)
T TIGR03345       631 NMSEFQEAHTVSRLKGSPPGYVG-YGE--GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDF  707 (852)
T ss_pred             eHHHhhhhhhhccccCCCCCccc-ccc--cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEec
Confidence            33         344566778887 654  56677888899999999999999999999999999999988764    699


Q ss_pred             CceEEEEeeCcChHHHHHHHH-----------------HHHHhhhHHHHhccc
Q psy1695         158 QNTIFLFLSNSGGTEIMNTFL-----------------ELRKSECIEFIFQCQ  193 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~~~-----------------~~~~~~~~r~~~~~~  193 (202)
                      +|++||+|||.+.+.+.+...                 .....+++.|..|++
T Consensus       708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~  760 (852)
T TIGR03345       708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT  760 (852)
T ss_pred             cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee
Confidence            999999999998876654321                 134557777777775

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG1051|consensus

Probab=99.93  E-value=2.2e-25  Score=199.61  Aligned_cols=157  Identities=21%  Similarity=0.351  Sum_probs=135.6

Q ss_pred             CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      .++..|++.|.+.|+||++|+..+.+++.+...+...+ +|. .++|.||+|||||.+|+++|.+++.+     ...+++
T Consensus       551 ~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgs-----e~~~Ir  624 (898)
T KOG1051|consen  551 ERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGS-----EENFIR  624 (898)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCC-----ccceEE
Confidence            36889999999999999999999999999976554322 354 49999999999999999999999883     345777


Q ss_pred             hhcc------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCc
Q psy1695          90 KFNS------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQN  159 (202)
Q Consensus        90 ~~~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~  159 (202)
                      ++++      .+.+.+++|++ +.+  .+.+.++++++|+.||+|||||++++.+++.|++++|+|+++++    +++.|
T Consensus       625 iDmse~~evskligsp~gyvG-~e~--gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN  701 (898)
T KOG1051|consen  625 LDMSEFQEVSKLIGSPPGYVG-KEE--GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN  701 (898)
T ss_pred             echhhhhhhhhccCCCccccc-chh--HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence            7766      56678888988 766  78999999999999999999999999999999999999999876    69999


Q ss_pred             eEEEEeeCcChHHHHHH
Q psy1695         160 TIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       160 ~~~Iltsn~~~~~i~~~  176 (202)
                      ++||||||.+.+.+...
T Consensus       702 ~I~IMTsn~~~~~i~~~  718 (898)
T KOG1051|consen  702 AIFIMTSNVGSSAIAND  718 (898)
T ss_pred             eEEEEecccchHhhhcc
Confidence            99999999988755443

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.93  E-value=3.2e-25  Score=200.23  Aligned_cols=172  Identities=19%  Similarity=0.301  Sum_probs=134.1

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceE-EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~-~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++..+++.|++.|+||+.|++.+.+++.....+-..+++|.+ ++|+||+|||||++|+++|+.+..        +++.+
T Consensus       444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~--------~~~~~  515 (731)
T TIGR02639       444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV--------HLERF  515 (731)
T ss_pred             HHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC--------CeEEE
Confidence            577899999999999999999999999875433222457874 899999999999999999999744        23333


Q ss_pred             hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++         .+.++++++++ +.+  .+.+.+.+...|++||+|||+|++++++++.|+++|++|.++++    +++
T Consensus       516 d~se~~~~~~~~~lig~~~gyvg-~~~--~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~  592 (731)
T TIGR02639       516 DMSEYMEKHTVSRLIGAPPGYVG-FEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF  592 (731)
T ss_pred             eCchhhhcccHHHHhcCCCCCcc-cch--hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence            332         33445667776 544  55677888889999999999999999999999999999988754    589


Q ss_pred             CceEEEEeeCcChHHHHHH-------------HHHHHHhhhHHHHhccch
Q psy1695         158 QNTIFLFLSNSGGTEIMNT-------------FLELRKSECIEFIFQCQP  194 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~-------------~~~~~~~~~~r~~~~~~~  194 (202)
                      ++++||+|||.+.+.+.+.             .......++++|..+++.
T Consensus       593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~  642 (731)
T TIGR02639       593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDA  642 (731)
T ss_pred             CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCe
Confidence            9999999999997765431             122345577777777764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=200.07  Aligned_cols=173  Identities=21%  Similarity=0.301  Sum_probs=134.9

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      .+..|++.|++.|+||+.|++.+..++.....+-..+++|. +++|+||||||||++|+++|+.+..        +++.+
T Consensus       448 ~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~--------~~i~i  519 (758)
T PRK11034        448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLRF  519 (758)
T ss_pred             HHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC--------CcEEe
Confidence            46789999999999999999999999998654433245787 4999999999999999999999743        33333


Q ss_pred             hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++         .+.+.++++++ |..  .+.+.+.+...|++||+|||+|++++++++.|+++|++|.+++.    +++
T Consensus       520 d~se~~~~~~~~~LiG~~~gyvg-~~~--~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~  596 (758)
T PRK11034        520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADF  596 (758)
T ss_pred             echhhcccccHHHHcCCCCCccc-ccc--cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecC
Confidence            333         33445566665 443  45677778888999999999999999999999999999987653    689


Q ss_pred             CceEEEEeeCcChHHHHHH-------------HHHHHHhhhHHHHhccchh
Q psy1695         158 QNTIFLFLSNSGGTEIMNT-------------FLELRKSECIEFIFQCQPL  195 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~-------------~~~~~~~~~~r~~~~~~~~  195 (202)
                      +|++||+|||.+.+.+.+.             .-+....++++|..+++.+
T Consensus       597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~i  647 (758)
T PRK11034        597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI  647 (758)
T ss_pred             CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEE
Confidence            9999999999886654332             1234567888888888753

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.92  E-value=1.1e-24  Score=199.40  Aligned_cols=179  Identities=22%  Similarity=0.341  Sum_probs=140.1

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++..|++.|.+.|+||+.|++.+..++.+...+-..+++|. +++|+||+|||||++|+++|+.+++   .+  .+++.+
T Consensus       555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~--~~~i~~  629 (852)
T TIGR03346       555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DE--DAMVRI  629 (852)
T ss_pred             HHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CC--CcEEEE
Confidence            46788999999999999999999999998654322245776 4999999999999999999999876   31  234444


Q ss_pred             hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++         .+.++++++++ |.+  .+.+.+.+...|+.||+|||++++++.+++.|+++|++|.++++    +++
T Consensus       630 d~s~~~~~~~~~~l~g~~~g~~g-~~~--~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~  706 (852)
T TIGR03346       630 DMSEYMEKHSVARLIGAPPGYVG-YEE--GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDF  706 (852)
T ss_pred             echhhcccchHHHhcCCCCCccC-ccc--ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEec
Confidence            333         33445567776 554  56777888889999999999999999999999999999988764    589


Q ss_pred             CceEEEEeeCcChHHHHHH------------HH-HHHHhhhHHHHhccchhHHH
Q psy1695         158 QNTIFLFLSNSGGTEIMNT------------FL-ELRKSECIEFIFQCQPLKVY  198 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~------------~~-~~~~~~~~r~~~~~~~~~~~  198 (202)
                      +|++||+|||.+.+.+.+.            .. .....++++|..+++.+.+|
T Consensus       707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF  760 (852)
T TIGR03346       707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF  760 (852)
T ss_pred             CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEec
Confidence            9999999999988755442            11 24666889999998765444

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.91  E-value=9.1e-24  Score=192.92  Aligned_cols=177  Identities=19%  Similarity=0.316  Sum_probs=135.2

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++..|++.|.+.++||+.|++.+..++.....+...+++|. +++|+||+|||||++|++||+.++.   .+  ..++.+
T Consensus       558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~--~~~i~i  632 (857)
T PRK10865        558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SD--DAMVRI  632 (857)
T ss_pred             HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CC--CcEEEE
Confidence            46789999999999999999999999998654322245786 5999999999999999999999876   21  233333


Q ss_pred             hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++         .+.+.++++++ +.+  .+.+.+.+...|++||+|||++++++.+++.|++++++|.++++    +++
T Consensus       633 d~se~~~~~~~~~LiG~~pgy~g-~~~--~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~  709 (857)
T PRK10865        633 DMSEFMEKHSVSRLVGAPPGYVG-YEE--GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF  709 (857)
T ss_pred             EhHHhhhhhhHHHHhCCCCcccc-cch--hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEee
Confidence            332         23445566665 444  45567778888899999999999999999999999999987754    689


Q ss_pred             CceEEEEeeCcChHHHHHHH-------------HHHHHhhhHHHHhccchhH
Q psy1695         158 QNTIFLFLSNSGGTEIMNTF-------------LELRKSECIEFIFQCQPLK  196 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~~-------------~~~~~~~~~r~~~~~~~~~  196 (202)
                      +|++||+|||.+.+.+.+.+             ......++++|..+++.+.
T Consensus       710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~ii  761 (857)
T PRK10865        710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVV  761 (857)
T ss_pred             cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeE
Confidence            99999999999877654321             1134567788888886543

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.84  E-value=2.3e-21  Score=146.08  Aligned_cols=136  Identities=21%  Similarity=0.264  Sum_probs=93.2

Q ss_pred             Cce-EEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhhcccccCC--CCchhHHHHHHhHHHHHHhhhhCCceE
Q psy1695          50 KAL-AISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFNSRIHFP--NENHVSLYRLQLTNWIISNVTACDRAI  125 (202)
Q Consensus        50 ~pl-~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~v  125 (202)
                      +|. .++|.||+|||||++|+++|+.++ .   .  ..+++.++++.+...  ....+.    .+.......+...+..|
T Consensus         1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~---~--~~~~~~~d~s~~~~~~~~~~~~~----~l~~~~~~~v~~~~~gV   71 (171)
T PF07724_consen    1 RPKSNFLLAGPSGVGKTELAKALAELLFVG---S--ERPLIRIDMSEYSEGDDVESSVS----KLLGSPPGYVGAEEGGV   71 (171)
T ss_dssp             S-SEEEEEESSTTSSHHHHHHHHHHHHT-S---S--CCEEEEEEGGGHCSHHHCSCHCH----HHHHHTTCHHHHHHHTE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHhccC---C--ccchHHHhhhcccccchHHhhhh----hhhhcccceeeccchhh
Confidence            355 499999999999999999999998 4   2  345666676665440  011111    00110001111222359


Q ss_pred             EEEecCCCCCh-----------hHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHHHHHHH-------------
Q psy1695         126 FIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTEIMNTF-------------  177 (202)
Q Consensus       126 iiiDEid~~~~-----------~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~i~~~~-------------  177 (202)
                      |+||||||+++           .+++.|+++||++.+++.    ++++|++||+|||.+...+....             
T Consensus        72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~  151 (171)
T PF07724_consen   72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQ  151 (171)
T ss_dssp             EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHH
T ss_pred             hhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHHHHH
Confidence            99999999999           999999999999988643    69999999999999988776621             


Q ss_pred             --HHHHHhhhHHHHhccch
Q psy1695         178 --LELRKSECIEFIFQCQP  194 (202)
Q Consensus       178 --~~~~~~~~~r~~~~~~~  194 (202)
                        -.....++++|..|++.
T Consensus       152 ~~~~~~~~f~pEf~~Ri~~  170 (171)
T PF07724_consen  152 IRDLVEYGFRPEFLGRIDV  170 (171)
T ss_dssp             HHHHHHHTS-HHHHTTSSE
T ss_pred             HHHHHHcCCCHHHHccCCc
Confidence              22455677777777653

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.80  E-value=9.1e-19  Score=147.67  Aligned_cols=143  Identities=22%  Similarity=0.328  Sum_probs=98.8

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC----CCC------CceEEEEecCCCCcHHHHHHHHHHHhhccccC
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY----HNT------KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD   81 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~----~~~------~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~   81 (202)
                      ....+++.|++.|+||+.|++.+..++.++...-.    .+.      .+.+++|+||||||||++|+++|+.+..    
T Consensus        67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~----  142 (413)
T TIGR00382        67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV----  142 (413)
T ss_pred             CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC----
Confidence            47899999999999999999999999866432211    011      1236999999999999999999988532    


Q ss_pred             cCccchhhhhcccccCCCCchhHHHHHHhHHHHHHh-------hhhCCceEEEEecCCCCCh--------------hHHH
Q psy1695          82 KGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISN-------VTACDRAIFIFDEVDKFPK--------------GLLD  140 (202)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------l~~~~~~viiiDEid~~~~--------------~~~~  140 (202)
                          ++.......+  ..+++++ ...  ...+...       +.....+||+|||+|++++              ++|+
T Consensus       143 ----pf~~~da~~L--~~~gyvG-~d~--e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~  213 (413)
T TIGR00382       143 ----PFAIADATTL--TEAGYVG-EDV--ENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ  213 (413)
T ss_pred             ----CeEEechhhc--ccccccc-ccH--HHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence                3333333332  1223433 111  1222222       2233447999999999987              6999


Q ss_pred             HHHHhcccCcccc-------cccCCceEEEEeeCc
Q psy1695         141 VIIPFIDHHAVYN-------QISFQNTIFLFLSNS  168 (202)
Q Consensus       141 ~L~~~le~~~~~~-------~~~~~~~~~Iltsn~  168 (202)
                      .|+++|+ |.+++       ..++++.++|+|||.
T Consensus       214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi  247 (413)
T TIGR00382       214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI  247 (413)
T ss_pred             HHHHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence            9999996 66542       257899999999999

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0989|consensus

Probab=99.78  E-value=9.1e-19  Score=139.44  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |+.+|+...+.     ++.||+.++..+.+++.+ . .     -| +++||||||||||+.|+++|+++++.  +-....
T Consensus        26 wteKYrPkt~d-----e~~gQe~vV~~L~~a~~~-~-~-----lp-~~LFyGPpGTGKTStalafar~L~~~--~~~~~r   90 (346)
T KOG0989|consen   26 WTEKYRPKTFD-----ELAGQEHVVQVLKNALLR-R-I-----LP-HYLFYGPPGTGKTSTALAFARALNCE--QLFPCR   90 (346)
T ss_pred             hHHHhCCCcHH-----hhcchHHHHHHHHHHHhh-c-C-----Cc-eEEeeCCCCCcHhHHHHHHHHHhcCc--cccccc
Confidence            44555555553     599999999999999987 2 2     22 79999999999999999999999882  111112


Q ss_pred             hhhhhcccccCCC--CchhHHHHHHhHHHHHHhh------hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695          87 FVHKFNSRIHFPN--ENHVSLYRLQLTNWIISNV------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ  158 (202)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l------~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~  158 (202)
                      +...+.+...+-.  +..+..+     ..+....      ...++.||||||+|.|+.++|+.|.+.||+..       +
T Consensus        91 vl~lnaSderGisvvr~Kik~f-----akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------~  158 (346)
T KOG0989|consen   91 VLELNASDERGISVVREKIKNF-----AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------R  158 (346)
T ss_pred             hhhhcccccccccchhhhhcCH-----HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------c
Confidence            2222222211110  0000001     1111111      11234999999999999999999999999976       8


Q ss_pred             ceEEEEeeCcChHHH
Q psy1695         159 NTIFLFLSNSGGTEI  173 (202)
Q Consensus       159 ~~~~Iltsn~~~~~i  173 (202)
                      ++.||+++|.-...+
T Consensus       159 ~trFiLIcnylsrii  173 (346)
T KOG0989|consen  159 TTRFILICNYLSRII  173 (346)
T ss_pred             ceEEEEEcCChhhCC
Confidence            999999999876543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.76  E-value=1.3e-17  Score=145.80  Aligned_cols=151  Identities=15%  Similarity=0.186  Sum_probs=96.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----------CcCccchhhhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----------DKGTSRFVHKF   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----------~~~~~~~~~~~   91 (202)
                      ++|+||+.+++.+.+++...       +.++.+||+||+|||||++|+.+++.+.+...          .+.+..+..+.
T Consensus        16 ddVIGQe~vv~~L~~al~~g-------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~   88 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQ-------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID   88 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence            36999999999888777643       24557999999999999999999999987211          11111222221


Q ss_pred             cc------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          92 NS------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        92 ~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ..      .+.......+...++ +...+...-...++.|+||||+|+|+...+|.|++.||+++       .+++||++
T Consensus        89 aG~hpDviEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-------~~v~FILa  160 (700)
T PRK12323         89 AGRFVDYIEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------EHVKFILA  160 (700)
T ss_pred             cCCCCcceEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-------CCceEEEE
Confidence            11      111111111221111 11222111223456999999999999999999999999987       89999999


Q ss_pred             eCcChHHHHHHHHHHHHhhhHHHHhcc
Q psy1695         166 SNSGGTEIMNTFLELRKSECIEFIFQC  192 (202)
Q Consensus       166 sn~~~~~i~~~~~~~~~~~~~r~~~~~  192 (202)
                      ||...+.+     ...+.-|.+|.++-
T Consensus       161 Ttep~kLl-----pTIrSRCq~f~f~~  182 (700)
T PRK12323        161 TTDPQKIP-----VTVLSRCLQFNLKQ  182 (700)
T ss_pred             eCChHhhh-----hHHHHHHHhcccCC
Confidence            98755432     33444455555544

>CHL00181 cbbX CbbX; Provisional

Probab=99.76  E-value=1.7e-17  Score=134.71  Aligned_cols=160  Identities=13%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHh-----Hh--ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ--NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK   82 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~-----~~--~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~   82 (202)
                      +.+++.+.+.|.++++|++.+++++.+.+...     ..  +...++.+++++|+||||||||++|+++|+.++.   .+
T Consensus        11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~---~g   87 (287)
T CHL00181         11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK---LG   87 (287)
T ss_pred             ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH---cC
Confidence            57899999999999999999999887665321     11  1111234567999999999999999999999765   33


Q ss_pred             C--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcc
Q psy1695          83 G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV  151 (202)
Q Consensus        83 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~  151 (202)
                      .  ..+++.+....+.       +.|.........+.+.....+|+||||++.+         ..++++.|+++|++.. 
T Consensus        88 ~~~~~~~~~v~~~~l~-------~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-  159 (287)
T CHL00181         88 YIKKGHLLTVTRDDLV-------GQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-  159 (287)
T ss_pred             CCCCCceEEecHHHHH-------HHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-
Confidence            2  1223333322221       1111100112233445555689999999986         4578899999999864 


Q ss_pred             cccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHH
Q psy1695         152 YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFI  189 (202)
Q Consensus       152 ~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~  189 (202)
                            .+.++|++++...   .+.++...+..+.||.
T Consensus       160 ------~~~~vI~ag~~~~---~~~~~~~np~L~sR~~  188 (287)
T CHL00181        160 ------DDLVVIFAGYKDR---MDKFYESNPGLSSRIA  188 (287)
T ss_pred             ------CCEEEEEeCCcHH---HHHHHhcCHHHHHhCC
Confidence                  6677777764431   2334444455555554

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.74  E-value=3.3e-17  Score=138.76  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC-------CCCc-eEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695          11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH-------NTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDK   82 (202)
Q Consensus        11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~-------~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~   82 (202)
                      ....++.+.|++.|+||+.|++.+..++..+...-..       ...+ .+++|+||||||||++|+++|+.+..     
T Consensus        60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~-----  134 (412)
T PRK05342         60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV-----  134 (412)
T ss_pred             CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC-----
Confidence            4678999999999999999999998888653221100       0011 26999999999999999999988633     


Q ss_pred             CccchhhhhcccccCCCCchhHHHHHHhHHHHH----HhhhhCCceEEEEecCCCCChh--------------HHHHHHH
Q psy1695          83 GTSRFVHKFNSRIHFPNENHVSLYRLQLTNWII----SNVTACDRAIFIFDEVDKFPKG--------------LLDVIIP  144 (202)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~viiiDEid~~~~~--------------~~~~L~~  144 (202)
                         +++.++++.+..  .++++...+.+...+.    ..+..+..+||+|||+|++++.              +|+.|++
T Consensus       135 ---pf~~id~~~l~~--~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~  209 (412)
T PRK05342        135 ---PFAIADATTLTE--AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK  209 (412)
T ss_pred             ---Cceecchhhccc--CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence               555555544321  2333311111111111    1133456789999999999753              8999999


Q ss_pred             hcccCccc--c----cccCCceEEEEeeCc
Q psy1695         145 FIDHHAVY--N----QISFQNTIFLFLSNS  168 (202)
Q Consensus       145 ~le~~~~~--~----~~~~~~~~~Iltsn~  168 (202)
                      +||.....  +    ..++.+.++|.|||.
T Consensus       210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni  239 (412)
T PRK05342        210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNI  239 (412)
T ss_pred             HHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence            99854321  1    134566667777776

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=6.1e-17  Score=138.18  Aligned_cols=133  Identities=16%  Similarity=0.226  Sum_probs=86.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS----   93 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~----   93 (202)
                      +++||+.++..+..++...       +.|.+++|+||+|||||++|+.+|+.+.+....     +.+..+..+...    
T Consensus        19 dvVGQe~iv~~L~~~i~~~-------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d   91 (484)
T PRK14956         19 DVIHQDLAIGALQNALKSG-------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD   91 (484)
T ss_pred             HHhChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence            5999999999887776642       245569999999999999999999999873110     111112111110    


Q ss_pred             --cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          94 --RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        94 --~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                        .+.......+...+ .+...+...-..+.+.|+||||+|+++.++++.|++.||+++       .+++||++||...
T Consensus        92 viEIdaas~~gVd~IR-eL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------~~viFILaTte~~  162 (484)
T PRK14956         92 VLEIDAASNRGIENIR-ELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------AHIVFILATTEFH  162 (484)
T ss_pred             ceeechhhcccHHHHH-HHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-------CceEEEeecCChh
Confidence              01000011111111 112222222223456899999999999999999999999987       8999999998743

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.71  E-value=9.6e-17  Score=124.03  Aligned_cols=124  Identities=17%  Similarity=0.286  Sum_probs=73.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~  100 (202)
                      ++++||++.++.+.-.+.......    .++ +++||||||+|||++|+.||+++..        ++.....     +.-
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~r~----~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--------~~~~~sg-----~~i   86 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKKRG----EALDHMLFYGPPGLGKTTLARIIANELGV--------NFKITSG-----PAI   86 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHCTT----S---EEEEESSTTSSHHHHHHHHHHHCT----------EEEEEC-----CC-
T ss_pred             HHccCcHHHHhhhHHHHHHHHhcC----CCcceEEEECCCccchhHHHHHHHhccCC--------CeEeccc-----hhh
Confidence            469999999999866666554321    333 7999999999999999999999643        2221111     110


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc--cc---------ccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---------~~~~~~~~Iltsn~~  169 (202)
                      ...+    ++...+ ..+  .+.+|+|||||+++++.+++.|++.||++.+.  .+         .+..+-.+|-+|+..
T Consensus        87 ~k~~----dl~~il-~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~  159 (233)
T PF05496_consen   87 EKAG----DLAAIL-TNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA  159 (233)
T ss_dssp             -SCH----HHHHHH-HT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG
T ss_pred             hhHH----HHHHHH-Hhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc
Confidence            1111    111111 112  34589999999999999999999999998752  12         244555666666543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=2.1e-16  Score=137.27  Aligned_cols=134  Identities=15%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhccc---
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSR---   94 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~---   94 (202)
                      +++||+.+++.+.+++...       +.|.++||+||+|||||++|+++|+.+.+..+.     +.+..+..+....   
T Consensus        17 divGq~~v~~~L~~~~~~~-------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d   89 (509)
T PRK14958         17 EVIGQAPVVRALSNALDQQ-------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD   89 (509)
T ss_pred             HhcCCHHHHHHHHHHHHhC-------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence            5999999999888777642       245579999999999999999999999873211     1111222221111   


Q ss_pred             ---ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          95 ---IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        95 ---~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                         +.......+...++ +...+...-..+++.|+||||+|+++...+|.|++.||+++       .++.||++|+...+
T Consensus        90 ~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-------~~~~fIlattd~~k  161 (509)
T PRK14958         90 LFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-------SHVKFILATTDHHK  161 (509)
T ss_pred             EEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-------CCeEEEEEECChHh
Confidence               11111111221111 11111112223456899999999999999999999999987       88999999975443

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=1.5e-16  Score=143.23  Aligned_cols=135  Identities=14%  Similarity=0.200  Sum_probs=88.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh-----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF-----   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~-----   91 (202)
                      ++|+||+.+++.+.+++...       +.|..+||+||+|||||++|+++|+.+.+...     .+.+..+..+.     
T Consensus        16 ddIIGQe~Iv~~LknaI~~~-------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~   88 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQ-------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV   88 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence            36999999999887776642       24556899999999999999999999987311     11111121111     


Q ss_pred             -cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          92 -NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        92 -~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                       ...+.......+...+ .+...+...-..+++.|+||||+++|+..++|.|++.||+++       .+++||++|+...
T Consensus        89 DviEidAas~~kVDdIR-eLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-------~~vrFILaTTe~~  160 (944)
T PRK14949         89 DLIEVDAASRTKVDDTR-ELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-------EHVKFLLATTDPQ  160 (944)
T ss_pred             eEEEeccccccCHHHHH-HHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-------CCeEEEEECCCch
Confidence             1111111011122111 122222222223567999999999999999999999999987       8899999987765


Q ss_pred             H
Q psy1695         171 T  171 (202)
Q Consensus       171 ~  171 (202)
                      .
T Consensus       161 k  161 (944)
T PRK14949        161 K  161 (944)
T ss_pred             h
Confidence            5

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=9.5e-17  Score=142.25  Aligned_cols=136  Identities=12%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcc---
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNS---   93 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~---   93 (202)
                      ++|+||+.+++.+.+++...       +.+..+||+||+|||||++|+.+++.+++...     .+.+..+..+...   
T Consensus        16 dEVIGQe~Vv~~L~~aL~~g-------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~   88 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGG-------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV   88 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence            36999999999887776532       24556899999999999999999999987311     1111122222111   


Q ss_pred             ---cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          94 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        94 ---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                         .+.......+...++ +...........+++|+||||+|+|+...+|.|++.||+..       .++.|||+||...
T Consensus        89 DviEIDAas~rgVDdIRe-LIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-------~~v~FILaTtd~~  160 (830)
T PRK07003         89 DYVEMDAASNRGVDEMAA-LLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------PHVKFILATTDPQ  160 (830)
T ss_pred             eEEEecccccccHHHHHH-HHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-------CCeEEEEEECChh
Confidence               111111111111111 11111111223456999999999999999999999999987       8999999999765


Q ss_pred             HH
Q psy1695         171 TE  172 (202)
Q Consensus       171 ~~  172 (202)
                      +.
T Consensus       161 KI  162 (830)
T PRK07003        161 KI  162 (830)
T ss_pred             hc
Confidence            53

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.70  E-value=2.4e-16  Score=128.03  Aligned_cols=161  Identities=13%  Similarity=0.161  Sum_probs=100.9

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHh-----Hh--ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNH-----FQ--NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK   82 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~-----~~--~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~   82 (202)
                      +..++++.+.|++.++|.+.+++++.+.+...     ..  +-.....+++++|+||||||||++|+++|+.++.   .+
T Consensus        10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~---~g   86 (284)
T TIGR02880        10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR---LG   86 (284)
T ss_pred             hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cC
Confidence            45678888899989999999999987654431     11  1000112347999999999999999999999875   33


Q ss_pred             C--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcc
Q psy1695          83 G--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAV  151 (202)
Q Consensus        83 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~  151 (202)
                      .  ..+++.+....+...   +++..    ...+.+.+..+..+|+||||++.+         +..+++.|++.|+.+. 
T Consensus        87 ~~~~~~~v~v~~~~l~~~---~~g~~----~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-  158 (284)
T TIGR02880        87 YVRKGHLVSVTRDDLVGQ---YIGHT----APKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-  158 (284)
T ss_pred             CcccceEEEecHHHHhHh---hcccc----hHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-
Confidence            2  123443333222111   11100    112233444555689999999977         3467899999999865 


Q ss_pred             cccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         152 YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       152 ~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                            .+.++|++++...   .+.++...+..+.||..
T Consensus       159 ------~~~~vI~a~~~~~---~~~~~~~np~L~sR~~~  188 (284)
T TIGR02880       159 ------DDLVVILAGYKDR---MDSFFESNPGFSSRVAH  188 (284)
T ss_pred             ------CCEEEEEeCCcHH---HHHHHhhCHHHHhhCCc
Confidence                  6777777766432   23444445556666643

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=8.5e-17  Score=140.34  Aligned_cols=147  Identities=18%  Similarity=0.276  Sum_probs=108.3

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      .+|+...++.|+++-+|-+++++.+.+.+.-....+.  -++..++|+||||||||++++.||+.+.+        .|++
T Consensus       311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~--~kGpILcLVGPPGVGKTSLgkSIA~al~R--------kfvR  380 (782)
T COG0466         311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK--LKGPILCLVGPPGVGKTSLGKSIAKALGR--------KFVR  380 (782)
T ss_pred             hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc--CCCcEEEEECCCCCCchhHHHHHHHHhCC--------CEEE
Confidence            5689999999999999999999999998875433221  13336899999999999999999999865        5666


Q ss_pred             hhccccc------CCCCchhHHHHHHhHHHHHHhhhhCC--ceEEEEecCCCCChh----HHHHHHHhcccCc---cccc
Q psy1695          90 KFNSRIH------FPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPKG----LLDVIIPFIDHHA---VYNQ  154 (202)
Q Consensus        90 ~~~~~~~------~~~~~~~~~~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~~----~~~~L~~~le~~~---~~~~  154 (202)
                      +......      +....|+|    .+.+.+.+.+..+.  .+|++|||||||..+    -..+|+.+||.-+   +.+.
T Consensus       381 ~sLGGvrDEAEIRGHRRTYIG----amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~Dh  456 (782)
T COG0466         381 ISLGGVRDEAEIRGHRRTYIG----AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDH  456 (782)
T ss_pred             EecCccccHHHhccccccccc----cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhc
Confidence            6543322      22233333    44555555555443  489999999999874    4788999998654   2222


Q ss_pred             -----ccCCceEEEEeeCcCh
Q psy1695         155 -----ISFQNTIFLFLSNSGG  170 (202)
Q Consensus       155 -----~~~~~~~~Iltsn~~~  170 (202)
                           .|.++++||.|+|.-.
T Consensus       457 YLev~yDLS~VmFiaTANsl~  477 (782)
T COG0466         457 YLEVPYDLSKVMFIATANSLD  477 (782)
T ss_pred             cccCccchhheEEEeecCccc
Confidence                 5999999999999864

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=3.8e-16  Score=134.35  Aligned_cols=134  Identities=13%  Similarity=0.167  Sum_probs=86.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh------
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF------   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~------   91 (202)
                      +++||+.+++.+.+++...       +.|.+++|+||+|+|||++|+.+|+.+.|..+     .+.+..+..+.      
T Consensus        14 dliGQe~vv~~L~~a~~~~-------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D   86 (491)
T PRK14964         14 DLVGQDVLVRILRNAFTLN-------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD   86 (491)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence            5999999998887666532       25558999999999999999999999877311     11112222221      


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .-.+.......+...++ +.......-..+.+.|+||||++.++...+|.|++.||+++       .++.||++|+...+
T Consensus        87 v~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-------~~v~fIlatte~~K  158 (491)
T PRK14964         87 VIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-------PHVKFILATTEVKK  158 (491)
T ss_pred             EEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-------CCeEEEEEeCChHH
Confidence            11111111111221111 11111111122356899999999999999999999999988       88999999965444

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=3.1e-16  Score=138.57  Aligned_cols=135  Identities=16%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccc--
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSR--   94 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~--   94 (202)
                      ++++||+.+++.+.+++...       +.+..+||+||+|||||++|+.+|+.+.+...     .+.+..+..+....  
T Consensus        16 ~divGQe~vv~~L~~~l~~~-------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~   88 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLG-------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV   88 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence            36999999999887777642       24556899999999999999999999988311     11121122221111  


Q ss_pred             ----ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          95 ----IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        95 ----~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                          +.......+...+ .+...+...-..+++.|+||||+|+|+...+|.|++.||+++       .++.||++|+...
T Consensus        89 D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------~~v~FIL~Tt~~~  160 (647)
T PRK07994         89 DLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTDPQ  160 (647)
T ss_pred             CceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-------CCeEEEEecCCcc
Confidence                1111111122111 122222222234567999999999999999999999999988       8999999987655


Q ss_pred             H
Q psy1695         171 T  171 (202)
Q Consensus       171 ~  171 (202)
                      .
T Consensus       161 k  161 (647)
T PRK07994        161 K  161 (647)
T ss_pred             c
Confidence            3

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=5.2e-16  Score=136.24  Aligned_cols=133  Identities=18%  Similarity=0.205  Sum_probs=88.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhc-----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFN-----   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~-----   92 (202)
                      +++||+.+++.+.+++...       +.|++++|+||+|||||++|+++|+.+++...     .+.+..+..+..     
T Consensus        14 eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~   86 (584)
T PRK14952         14 EVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS   86 (584)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence            5999999999988777642       25657999999999999999999999987311     111112222111     


Q ss_pred             ---ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          93 ---SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        93 ---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                         ..+.......+...+ ++...+...-..+++.|+||||++.|+.+++|.|++.||+.+       .+++||++|+..
T Consensus        87 ~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-------~~~~fIL~tte~  158 (584)
T PRK14952         87 IDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-------EHLIFIFATTEP  158 (584)
T ss_pred             ceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-------CCeEEEEEeCCh
Confidence               011111111222111 122222222223567999999999999999999999999987       899999999655


Q ss_pred             h
Q psy1695         170 G  170 (202)
Q Consensus       170 ~  170 (202)
                      .
T Consensus       159 ~  159 (584)
T PRK14952        159 E  159 (584)
T ss_pred             H
Confidence            3

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.68  E-value=3.6e-16  Score=141.94  Aligned_cols=134  Identities=18%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcc----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNS----   93 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~----   93 (202)
                      +|+||+.+++.|.+++...       +.++.+||+||+|||||++|+.||+.|+|...     .+.+..|..+...    
T Consensus        16 eiiGqe~v~~~L~~~i~~~-------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~   88 (824)
T PRK07764         16 EVIGQEHVTEPLSTALDSG-------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS   88 (824)
T ss_pred             HhcCcHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence            6999999999988777642       24556999999999999999999999987321     1112222222211    


Q ss_pred             ----cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          94 ----RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        94 ----~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                          .+.......+...+ .+...+...-...++.|+||||+|+|+...+|.|+++||+..       .+++|||+|+..
T Consensus        89 ~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-------~~~~fIl~tt~~  160 (824)
T PRK07764         89 LDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-------EHLKFIFATTEP  160 (824)
T ss_pred             CcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-------CCeEEEEEeCCh
Confidence                11111111122111 112222222233567999999999999999999999999987       899999999655


Q ss_pred             hH
Q psy1695         170 GT  171 (202)
Q Consensus       170 ~~  171 (202)
                      .+
T Consensus       161 ~k  162 (824)
T PRK07764        161 DK  162 (824)
T ss_pred             hh
Confidence            43

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.68  E-value=1.5e-16  Score=124.55  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCC--CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNT--KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~--~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      ++++||++|+..+ +.+-.++.+|...+  -|..+||+||||||||++|+++|++..        .+++.+....+.+.+
T Consensus       121 ddViGqEeAK~kc-rli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--------vp~l~vkat~liGeh  191 (368)
T COG1223         121 DDVIGQEEAKRKC-RLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--------VPLLLVKATELIGEH  191 (368)
T ss_pred             hhhhchHHHHHHH-HHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--------CceEEechHHHHHHH
Confidence            5799999999886 55556666554222  355799999999999999999999853        355555555444433


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                      -+...    .....+.+..+.....|+||||+|...-            ++.|+|+.-|+.-.     ....+++|..||
T Consensus       192 VGdga----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-----eneGVvtIaaTN  262 (368)
T COG1223         192 VGDGA----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-----ENEGVVTIAATN  262 (368)
T ss_pred             hhhHH----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-----cCCceEEEeecC
Confidence            22211    1123344444444558999999976632            46778887777532     335667788887


Q ss_pred             cCh---HHHHHHHHHHHHhhhHHHHhccchhHHHhhcC
Q psy1695         168 SGG---TEIMNTFLELRKSECIEFIFQCQPLKVYLKKL  202 (202)
Q Consensus       168 ~~~---~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  202 (202)
                      ...   ..+-.++-+...--.+.-..++..|..|+||+
T Consensus       263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~  300 (368)
T COG1223         263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF  300 (368)
T ss_pred             ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence            642   11211111111111222233445577777763

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.68  E-value=8.9e-16  Score=134.73  Aligned_cols=134  Identities=16%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccc---
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSR---   94 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~---   94 (202)
                      +++||+.+++.+.+++...       +.+.+++|+||+|||||++|+++|+.+.+...     .+.+..+..+....   
T Consensus        16 dVIGQe~vv~~L~~aI~~g-------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD   88 (702)
T PRK14960         16 ELVGQNHVSRALSSALERG-------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID   88 (702)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence            6999999998888777632       24557999999999999999999999987311     01111111111111   


Q ss_pred             ---ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          95 ---IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        95 ---~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                         +.......+...++ +...+...-..+++.|+||||+++++...++.|++.|++++       .++.||++|+....
T Consensus        89 viEIDAAs~~~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------~~v~FILaTtd~~k  160 (702)
T PRK14960         89 LIEIDAASRTKVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------EHVKFLFATTDPQK  160 (702)
T ss_pred             eEEecccccCCHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-------CCcEEEEEECChHh
Confidence               11111111221111 11111111223456899999999999999999999999987       78899999976544

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.67  E-value=6.3e-16  Score=124.23  Aligned_cols=151  Identities=14%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHh----H---hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchh
Q psy1695          18 EQLKQHVHGQELAISHICGALKNH----F---QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFV   88 (202)
Q Consensus        18 ~~L~~~liGq~~a~~~l~~~l~~~----~---~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~   88 (202)
                      ++|++ ++|++.+++.+.+.+...    .   .+......+.+++|+||||||||++|+++|+.+..   .+.  ...++
T Consensus         3 ~~l~~-~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v   78 (261)
T TIGR02881         3 RELSR-MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLI   78 (261)
T ss_pred             HHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceE
Confidence            45554 999999999987655432    1   11110223457999999999999999999998764   221  22333


Q ss_pred             hhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCce
Q psy1695          89 HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNT  160 (202)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~  160 (202)
                      .+..+.+...   +++    .....+.+.+.....+|+||||++.+.        .+.++.|++.|++..       .+.
T Consensus        79 ~~~~~~l~~~---~~g----~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------~~~  144 (261)
T TIGR02881        79 EVERADLVGE---YIG----HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------NEF  144 (261)
T ss_pred             EecHHHhhhh---hcc----chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------CCE
Confidence            3333322211   111    112223344555556899999999875        357888999998864       566


Q ss_pred             EEEEeeCcChHHHHHHHHHHHHhhhHHHH
Q psy1695         161 IFLFLSNSGGTEIMNTFLELRKSECIEFI  189 (202)
Q Consensus       161 ~~Iltsn~~~~~i~~~~~~~~~~~~~r~~  189 (202)
                      ++|++++...   .+.++...++.+.||.
T Consensus       145 ~vila~~~~~---~~~~~~~~p~L~sRf~  170 (261)
T TIGR02881       145 VLILAGYSDE---MDYFLSLNPGLRSRFP  170 (261)
T ss_pred             EEEecCCcch---hHHHHhcChHHHhccc
Confidence            6777654422   2334444455566663

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR00763 lon ATP-dependent protease La

Probab=99.67  E-value=3.1e-16  Score=142.85  Aligned_cols=149  Identities=19%  Similarity=0.235  Sum_probs=96.3

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      ..++..+++.|+++++||+.+++.+.+.+........ . ++.+++|+||||||||++|+++|+.+..        ++++
T Consensus       308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~-~~~~lll~GppG~GKT~lAk~iA~~l~~--------~~~~  377 (775)
T TIGR00763       308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-M-KGPILCLVGPPGVGKTSLGKSIAKALNR--------KFVR  377 (775)
T ss_pred             hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-C-CCceEEEECCCCCCHHHHHHHHHHHhcC--------CeEE
Confidence            4578999999999999999999999987765432221 1 2237999999999999999999999754        2222


Q ss_pred             hhccc------ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh----HHHHHHHhccc---Ccccc---
Q psy1695          90 KFNSR------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG----LLDVIIPFIDH---HAVYN---  153 (202)
Q Consensus        90 ~~~~~------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~----~~~~L~~~le~---~~~~~---  153 (202)
                      +.++.      +.+....+++.....+...+...  ....+||+|||||++.+.    ..+.|+++|+.   +.+.+   
T Consensus       378 i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~--~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~  455 (775)
T TIGR00763       378 FSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA--KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYL  455 (775)
T ss_pred             EeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh--CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccC
Confidence            22111      11111112210001111122211  123369999999999764    45889999985   22322   


Q ss_pred             --cccCCceEEEEeeCcCh
Q psy1695         154 --QISFQNTIFLFLSNSGG  170 (202)
Q Consensus       154 --~~~~~~~~~Iltsn~~~  170 (202)
                        ..++++++||+|||...
T Consensus       456 ~~~~d~s~v~~I~TtN~~~  474 (775)
T TIGR00763       456 DVPFDLSKVIFIATANSID  474 (775)
T ss_pred             CceeccCCEEEEEecCCch
Confidence              24778999999999853

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.67  E-value=1.2e-15  Score=128.67  Aligned_cols=138  Identities=11%  Similarity=0.193  Sum_probs=90.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC--CCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----CcCccchhhhhc---
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----DKGTSRFVHKFN---   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~---   92 (202)
                      ++|+||+.+++.+.+++........  ..+.|.+++|+||+|+|||++|+.+|+.+.+...    .+.+..+..+..   
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h   84 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH   84 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            4699999999999999986432111  0124567999999999999999999999988311    111111222211   


Q ss_pred             ccccC--CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          93 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        93 ~~~~~--~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      +++..  +....++  .+++. .+.+.+.    ..++.|+||||+|+|++..+|.|++.||+++       .+++||++|
T Consensus        85 pD~~~i~~~~~~i~--i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~-------~~~~fIL~a  154 (394)
T PRK07940         85 PDVRVVAPEGLSIG--VDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP-------PRTVWLLCA  154 (394)
T ss_pred             CCEEEeccccccCC--HHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC-------CCCeEEEEE
Confidence            11111  1111121  11222 2223232    2345899999999999999999999999987       788899988


Q ss_pred             CcC
Q psy1695         167 NSG  169 (202)
Q Consensus       167 n~~  169 (202)
                      +..
T Consensus       155 ~~~  157 (394)
T PRK07940        155 PSP  157 (394)
T ss_pred             CCh
Confidence            874

>PLN03025 replication factor C subunit; Provisional

Probab=99.67  E-value=5.3e-16  Score=128.07  Aligned_cols=138  Identities=17%  Similarity=0.255  Sum_probs=89.0

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |+.+|+...+.     +++||+.+++.+...+.    .+.   .| +++|+||||||||++|+++|+.+++   .+....
T Consensus         3 w~~kyrP~~l~-----~~~g~~~~~~~L~~~~~----~~~---~~-~lll~Gp~G~GKTtla~~la~~l~~---~~~~~~   66 (319)
T PLN03025          3 WVEKYRPTKLD-----DIVGNEDAVSRLQVIAR----DGN---MP-NLILSGPPGTGKTTSILALAHELLG---PNYKEA   66 (319)
T ss_pred             hhhhcCCCCHH-----HhcCcHHHHHHHHHHHh----cCC---Cc-eEEEECCCCCCHHHHHHHHHHHHhc---ccCccc
Confidence            55667777765     58999998887765544    221   34 5899999999999999999999876   321112


Q ss_pred             hhhhhcccccCCCCchhHHHHHHhHHHHHHh--hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      ++..+.+     +.......++.+.......  .......|++|||+|.++...++.|++.++...       .++.||+
T Consensus        67 ~~eln~s-----d~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-------~~t~~il  134 (319)
T PLN03025         67 VLELNAS-----DDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-------NTTRFAL  134 (319)
T ss_pred             eeeeccc-----ccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-------CCceEEE
Confidence            2222221     1111111111111100000  111346899999999999999999999999865       6678999


Q ss_pred             eeCcChHH
Q psy1695         165 LSNSGGTE  172 (202)
Q Consensus       165 tsn~~~~~  172 (202)
                      ++|.....
T Consensus       135 ~~n~~~~i  142 (319)
T PLN03025        135 ACNTSSKI  142 (319)
T ss_pred             EeCCcccc
Confidence            99976543

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.67  E-value=1.2e-16  Score=137.24  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=104.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-Cc----Cccchhhhhcccc--
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DK----GTSRFVHKFNSRI--   95 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~----~~~~~~~~~~~~~--   95 (202)
                      +++||+.+++.+..++....       .+++++|.||-|||||++||.+|+.+.|... .+    .+..+..+.-..+  
T Consensus        17 evvGQe~v~~~L~nal~~~r-------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D   89 (515)
T COG2812          17 DVVGQEHVVKTLSNALENGR-------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID   89 (515)
T ss_pred             HhcccHHHHHHHHHHHHhCc-------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence            57999999999998888632       3347999999999999999999999998421 11    1111111211111  


Q ss_pred             ----cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          96 ----HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        96 ----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                          .......+. ....+...+...-..+.+.|++|||++.++..++|.|++.+|+++       +++.|||+|.-..+
T Consensus        90 viEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-------~hV~FIlATTe~~K  161 (515)
T COG2812          90 VIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-------SHVKFILATTEPQK  161 (515)
T ss_pred             chhhhhhhccChH-HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-------cCeEEEEecCCcCc
Confidence                111111222 111223333333344556999999999999999999999999999       99999999976544


Q ss_pred             HHHHHHHHHHHhhhHHHHhccchhHHHhh
Q psy1695         172 EIMNTFLELRKSECIEFIFQCQPLKVYLK  200 (202)
Q Consensus       172 ~i~~~~~~~~~~~~~r~~~~~~~~~~~~~  200 (202)
                      .     ......-|.||.++--+...+.+
T Consensus       162 i-----p~TIlSRcq~f~fkri~~~~I~~  185 (515)
T COG2812         162 I-----PNTILSRCQRFDFKRLDLEEIAK  185 (515)
T ss_pred             C-----chhhhhccccccccCCCHHHHHH
Confidence            2     22344556677777666555444

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=1.8e-15  Score=133.59  Aligned_cols=134  Identities=17%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhc----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFN----   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~----   92 (202)
                      ++++||+.+++.+.+++...       +.|+++||+||+|+|||++|+++++.+.+...     .+.+..+..+..    
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~   88 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTG-------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV   88 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence            36999999998888777642       24557999999999999999999999987311     111112222211    


Q ss_pred             --ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          93 --SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        93 --~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                        ..+.+.....+...+ .+...+...-...++.|+||||+|+|+...+|.|++.||+++       .+++||++||...
T Consensus        89 d~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-------~~~~fIl~t~~~~  160 (576)
T PRK14965         89 DVFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-------PHVKFIFATTEPH  160 (576)
T ss_pred             CeeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-------CCeEEEEEeCChh
Confidence              111111111121111 112222211223456899999999999999999999999987       8999999997654

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=1.7e-15  Score=133.57  Aligned_cols=132  Identities=14%  Similarity=0.176  Sum_probs=86.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc----------CcCccchhhhhc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK----------DKGTSRFVHKFN   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~----------~~~~~~~~~~~~   92 (202)
                      +++||+.+++.+.+++...       +.|..+||+||+|||||++|+++|+.++|..+          .|.+..+..+..
T Consensus        17 dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~   89 (618)
T PRK14951         17 EMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS   89 (618)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence            5899999998887776643       25557999999999999999999999987311          111111222211


Q ss_pred             ccc---cCCCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          93 SRI---HFPNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        93 ~~~---~~~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      ..+   ..-+. ...+ . ++ .+.+.+.+.    .+++.|+||||+|+|+...+|.|++.||+++       .++.|||
T Consensus        90 g~h~D~~eldaas~~~-V-d~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-------~~~~fIL  159 (618)
T PRK14951         90 GRFVDYTELDAASNRG-V-DE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-------EYLKFVL  159 (618)
T ss_pred             CCCCceeecCcccccC-H-HH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-------CCeEEEE
Confidence            111   00011 0111 1 11 112222222    2346899999999999999999999999987       8899999


Q ss_pred             eeCcChH
Q psy1695         165 LSNSGGT  171 (202)
Q Consensus       165 tsn~~~~  171 (202)
                      +|+...+
T Consensus       160 ~Ttd~~k  166 (618)
T PRK14951        160 ATTDPQK  166 (618)
T ss_pred             EECCchh
Confidence            9976544

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.65  E-value=1e-15  Score=114.53  Aligned_cols=130  Identities=18%  Similarity=0.272  Sum_probs=82.0

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc----Cccchhhhhc---cccc--
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----GTSRFVHKFN---SRIH--   96 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~----~~~~~~~~~~---~~~~--   96 (202)
                      ||+.+++.+.+.+...       +.|.+++|+||+|+||+++|+.+|+.+++.....    ....+..+..   .++.  
T Consensus         1 gq~~~~~~L~~~~~~~-------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~   73 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII   73 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred             CcHHHHHHHHHHHHcC-------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence            7888888887777642       2566899999999999999999999998842221    0111111111   1110  


Q ss_pred             CCCCc--hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          97 FPNEN--HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        97 ~~~~~--~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      .+...  .++  .+++. .+.+.+..    +++.|+||||+|+|+.+++|.|++.||+++       .+++|||+|+...
T Consensus        74 ~~~~~~~~i~--i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-------~~~~fiL~t~~~~  143 (162)
T PF13177_consen   74 KPDKKKKSIK--IDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-------ENTYFILITNNPS  143 (162)
T ss_dssp             ETTTSSSSBS--HHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-------TTEEEEEEES-GG
T ss_pred             ecccccchhh--HHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-------CCEEEEEEECChH
Confidence            01111  122  11222 33333332    345899999999999999999999999998       8999999998776


Q ss_pred             HH
Q psy1695         171 TE  172 (202)
Q Consensus       171 ~~  172 (202)
                      ..
T Consensus       144 ~i  145 (162)
T PF13177_consen  144 KI  145 (162)
T ss_dssp             GS
T ss_pred             HC
Confidence            53

...

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=3.6e-15  Score=130.32  Aligned_cols=133  Identities=15%  Similarity=0.212  Sum_probs=87.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~   96 (202)
                      ++++||+.+++.+.+++...       +.+.+++|+||+|+|||++|+.+|+.+.+...     .+.+..+..+....+.
T Consensus        16 ~divGq~~v~~~L~~~i~~~-------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~   88 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQ-------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV   88 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            36999999999887777642       24557899999999999999999999987311     1112222222111110


Q ss_pred             ---CCC-CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          97 ---FPN-ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        97 ---~~~-~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                         ... ....+  .+++. .+.+...    .+++.|+||||+|+++..++|.|++.|++++       .++.||++|+.
T Consensus        89 d~~ei~~~~~~~--vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-------~~~~fIL~t~d  158 (527)
T PRK14969         89 DLIEVDAASNTQ--VDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTD  158 (527)
T ss_pred             ceeEeeccccCC--HHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-------CCEEEEEEeCC
Confidence               001 11111  11112 2222222    2345899999999999999999999999987       78999999976


Q ss_pred             ChH
Q psy1695         169 GGT  171 (202)
Q Consensus       169 ~~~  171 (202)
                      ...
T Consensus       159 ~~k  161 (527)
T PRK14969        159 PQK  161 (527)
T ss_pred             hhh
Confidence            443

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=2.8e-15  Score=130.67  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~   97 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|||||++|+.+|+.+.+...     .+.+..+..+....+..
T Consensus        17 diiGq~~~v~~L~~~i~~~-------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d   89 (546)
T PRK14957         17 EVAGQQHALNSLVHALETQ-------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID   89 (546)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence            5999999999887777642       14556999999999999999999999987311     11111122221111100


Q ss_pred             ----CCCchhHHHHH--HhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          98 ----PNENHVSLYRL--QLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        98 ----~~~~~~~~~~~--~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                          ......+ ..+  .+...+...-..+++.|+||||+|+++...++.|++.||+++       .+++||++|+..
T Consensus        90 lieidaas~~g-vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------~~v~fIL~Ttd~  159 (546)
T PRK14957         90 LIEIDAASRTG-VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------EYVKFILATTDY  159 (546)
T ss_pred             eEEeecccccC-HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-------CCceEEEEECCh
Confidence                0001111 111  112222222223456899999999999999999999999987       788999988653

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.64  E-value=2.8e-15  Score=125.84  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=84.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---c
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---S   93 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~   93 (202)
                      ++++||+.+++.+.+++...       +.|.+++|+||+|+|||++|+++|+.+.+....     +.+..+..+..   .
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~-------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~   88 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLG-------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL   88 (363)
T ss_pred             hhccChHHHHHHHHHHHHcC-------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            36999999999887777532       245578999999999999999999998762111     00001111110   0


Q ss_pred             cccCCCCch-hHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          94 RIHFPNENH-VSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        94 ~~~~~~~~~-~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      .+....+.. .+ . ++ ...+.+.+..    .++.|+||||+|+++...++.|++.+++++       .++.||++|+.
T Consensus        89 d~~~~~~~~~~~-v-~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-------~~~~fIl~t~~  158 (363)
T PRK14961         89 DLIEIDAASRTK-V-EE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------QHIKFILATTD  158 (363)
T ss_pred             ceEEecccccCC-H-HH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            111001110 11 1 11 1222222222    345799999999999999999999999977       78889998865


Q ss_pred             Ch
Q psy1695         169 GG  170 (202)
Q Consensus       169 ~~  170 (202)
                      ..
T Consensus       159 ~~  160 (363)
T PRK14961        159 VE  160 (363)
T ss_pred             hH
Confidence            43

>KOG0991|consensus

Probab=99.63  E-value=2e-15  Score=116.57  Aligned_cols=139  Identities=19%  Similarity=0.288  Sum_probs=96.4

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |+.+|+...+.     +++|.++.++.+.-....       ++-| +++|.||||+|||+.+..+|+.|..   ......
T Consensus        17 wVeKYrP~~l~-----dIVGNe~tv~rl~via~~-------gnmP-~liisGpPG~GKTTsi~~LAr~LLG---~~~ke~   80 (333)
T KOG0991|consen   17 WVEKYRPSVLQ-----DIVGNEDTVERLSVIAKE-------GNMP-NLIISGPPGTGKTTSILCLARELLG---DSYKEA   80 (333)
T ss_pred             HHHhhCchHHH-----HhhCCHHHHHHHHHHHHc-------CCCC-ceEeeCCCCCchhhHHHHHHHHHhC---hhhhhH
Confidence            66677777764     699999999887544432       1234 6899999999999999999999977   322223


Q ss_pred             hhhhhcccccCCCCchhHHHHHHhHHHHHHhhh--hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT--ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      +++.+.+.     ...+...+..++......+.  .+.+.|+|+||+|.|...+|++|.+.||-+.       +.+.|.+
T Consensus        81 vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-------~ttRFal  148 (333)
T KOG0991|consen   81 VLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-------NTTRFAL  148 (333)
T ss_pred             hhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-------ccchhhh
Confidence            34444332     22222122222222222222  2456999999999999999999999999876       7888999


Q ss_pred             eeCcChHHH
Q psy1695         165 LSNSGGTEI  173 (202)
Q Consensus       165 tsn~~~~~i  173 (202)
                      ++|...+++
T Consensus       149 aCN~s~KIi  157 (333)
T KOG0991|consen  149 ACNQSEKII  157 (333)
T ss_pred             hhcchhhhh
Confidence            999887765

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.63  E-value=4.7e-15  Score=111.48  Aligned_cols=132  Identities=13%  Similarity=0.159  Sum_probs=88.6

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  103 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
                      ++|.+.++..+.+.++.....+      .+++++|++||||+.+|++|.+...+   .  ..+|+.++++.+...   . 
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~------~pVlI~GE~GtGK~~lA~~IH~~s~r---~--~~pfi~vnc~~~~~~---~-   65 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSD------LPVLITGETGTGKELLARAIHNNSPR---K--NGPFISVNCAALPEE---L-   65 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTST------S-EEEECSTTSSHHHHHHHHHHCSTT---T--TS-EEEEETTTS-HH---H-
T ss_pred             CEeCCHHHHHHHHHHHHHhCCC------CCEEEEcCCCCcHHHHHHHHHHhhhc---c--cCCeEEEehhhhhcc---h-
Confidence            6899999999999999877543      37899999999999999999886433   2  456777776544110   0 


Q ss_pred             HHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695         104 SLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS  168 (202)
Q Consensus       104 ~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~  168 (202)
                        ....+.+           .-.+.+..+..++++||||+.+++.+|..|+++|+++.+...    ....++.+|++||.
T Consensus        66 --~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~  143 (168)
T PF00158_consen   66 --LESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK  143 (168)
T ss_dssp             --HHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred             --hhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence              0000000           001345566678999999999999999999999999876432    23458899999997


Q ss_pred             ChHH
Q psy1695         169 GGTE  172 (202)
Q Consensus       169 ~~~~  172 (202)
                      ..+.
T Consensus       144 ~l~~  147 (168)
T PF00158_consen  144 DLEE  147 (168)
T ss_dssp             -HHH
T ss_pred             CHHH
Confidence            7554

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.63  E-value=6.1e-15  Score=130.37  Aligned_cols=135  Identities=16%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccc-
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRI-   95 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~-   95 (202)
                      ++++||+.+++.+.+++...       +.|.++||+||+|||||++|+++|+.+.+....     +.+..+..+....+ 
T Consensus        16 ddIIGQe~vv~~L~~ai~~~-------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~   88 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEG-------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV   88 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence            36999999999888777642       245579999999999999999999999873110     11111222211111 


Q ss_pred             -----cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          96 -----HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        96 -----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                           .......+...++ +.......-...++.|+||||+++++...++.|++.|++.+       .++.|||+||...
T Consensus        89 DvlEidaAs~~gVd~IRe-lle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-------~~v~fILaTtd~~  160 (709)
T PRK08691         89 DLLEIDAASNTGIDNIRE-VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-------EHVKFILATTDPH  160 (709)
T ss_pred             ceEEEeccccCCHHHHHH-HHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence                 1111111211111 11111111122456899999999999999999999999976       7899999997654


Q ss_pred             H
Q psy1695         171 T  171 (202)
Q Consensus       171 ~  171 (202)
                      .
T Consensus       161 k  161 (709)
T PRK08691        161 K  161 (709)
T ss_pred             c
Confidence            4

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.62  E-value=7.6e-15  Score=130.70  Aligned_cols=130  Identities=18%  Similarity=0.293  Sum_probs=85.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc---Cccchhhh---hccccc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRFVHK---FNSRIH   96 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~~~~---~~~~~~   96 (202)
                      +++||+.+++.+.+++...       +.++++||+||+|+|||++|+++|+.+.|.....   .+..+...   ....+.
T Consensus        19 dIiGQe~~v~~L~~aI~~~-------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie   91 (725)
T PRK07133         19 DIVGQDHIVQTLKNIIKSN-------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE   91 (725)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence            6999999999888877642       2455799999999999999999999998832110   11111110   000000


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ....+..+ .. + .+.+.+.+.    .+++.|+||||++.|+..+++.|++.||+++       .+++||++|+..
T Consensus        92 idaasn~~-vd-~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-------~~tifILaTte~  158 (725)
T PRK07133         92 MDAASNNG-VD-E-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-------KHVIFILATTEV  158 (725)
T ss_pred             EeccccCC-HH-H-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-------CceEEEEEcCCh
Confidence            00001111 11 1 122333333    3456899999999999999999999999987       889999999644

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.62  E-value=6.5e-15  Score=127.58  Aligned_cols=129  Identities=20%  Similarity=0.308  Sum_probs=85.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC---------cCccchhhhh--
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD---------KGTSRFVHKF--   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~---------~~~~~~~~~~--   91 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|||||++|+++|+.+.+....         +.+..+..+.  
T Consensus        22 dliGq~~vv~~L~~ai~~~-------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~   94 (507)
T PRK06645         22 ELQGQEVLVKVLSYTILND-------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH   94 (507)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence            5899999999887766542       245579999999999999999999999873110         1111111111  


Q ss_pred             ----cccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695          92 ----NSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        92 ----~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                          ...+.......+.    ++.. +.+...    .+++.|+||||++.++...++.|++.|++++       .+++||
T Consensus        95 ~h~Dv~eidaas~~~vd----~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-------~~~vfI  162 (507)
T PRK06645         95 NHPDIIEIDAASKTSVD----DIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-------PHIIFI  162 (507)
T ss_pred             CCCcEEEeeccCCCCHH----HHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-------CCEEEE
Confidence                1111111111222    1122 222222    2346899999999999999999999999977       789999


Q ss_pred             EeeCcCh
Q psy1695         164 FLSNSGG  170 (202)
Q Consensus       164 ltsn~~~  170 (202)
                      ++|+...
T Consensus       163 ~aTte~~  169 (507)
T PRK06645        163 FATTEVQ  169 (507)
T ss_pred             EEeCChH
Confidence            9886544

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=1.1e-14  Score=123.66  Aligned_cols=128  Identities=16%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-------------CcCccchhh
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-------------DKGTSRFVH   89 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-------------~~~~~~~~~   89 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|+|||++|+++|+.+.+...             .+.+..+..
T Consensus        17 eiiGq~~~~~~L~~~~~~~-------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~   89 (397)
T PRK14955         17 DITAQEHITRTIQNSLRMG-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD   89 (397)
T ss_pred             hccChHHHHHHHHHHHHhC-------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence            6999999999887666532       25667999999999999999999999987310             000111111


Q ss_pred             hh------cccccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCc
Q psy1695          90 KF------NSRIHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQN  159 (202)
Q Consensus        90 ~~------~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~  159 (202)
                      +.      ...+.......+.    ++. .+.+.+    ..+++.|+||||+++++...++.|++.+++++       ..
T Consensus        90 ~~~~~~~n~~~~~~~~~~~id----~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-------~~  157 (397)
T PRK14955         90 FDAGTSLNISEFDAASNNSVD----DIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-------PH  157 (397)
T ss_pred             HhcCCCCCeEeecccccCCHH----HHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-------CC
Confidence            11      1111111111111    112 222233    23456899999999999999999999999976       78


Q ss_pred             eEEEEeeCcC
Q psy1695         160 TIFLFLSNSG  169 (202)
Q Consensus       160 ~~~Iltsn~~  169 (202)
                      ++||++++..
T Consensus       158 t~~Il~t~~~  167 (397)
T PRK14955        158 AIFIFATTEL  167 (397)
T ss_pred             eEEEEEeCCh
Confidence            8888888643

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=8.4e-15  Score=126.21  Aligned_cols=127  Identities=18%  Similarity=0.282  Sum_probs=81.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS----   93 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~----   93 (202)
                      +++||+.+++.+..++...       +.|.+++|+||||||||++|+++|+.+.+....     +.+..+..+...    
T Consensus        15 divGq~~i~~~L~~~i~~~-------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d   87 (472)
T PRK14962         15 EVVGQDHVKKLIINALKKN-------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD   87 (472)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence            5999999988776655532       245579999999999999999999998762111     111111211111    


Q ss_pred             --cccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695          94 --RIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus        94 --~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                        .+.......+.    .+ +.+.+...    .+.+.|+||||++.++...++.|++.+++++       .+++||++||
T Consensus        88 v~el~aa~~~gid----~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------~~vv~Ilatt  155 (472)
T PRK14962         88 VIELDAASNRGID----EI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------SHVVFVLATT  155 (472)
T ss_pred             cEEEeCcccCCHH----HH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-------CcEEEEEEeC
Confidence              11111111111    11 12222222    2345899999999999999999999999976       7888888887


Q ss_pred             c
Q psy1695         168 S  168 (202)
Q Consensus       168 ~  168 (202)
                      .
T Consensus       156 n  156 (472)
T PRK14962        156 N  156 (472)
T ss_pred             C
Confidence            4

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=8.2e-15  Score=128.90  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=87.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcc---
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNS---   93 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~---   93 (202)
                      ++++||+.+++.+.+++...       +.++++||+||+|||||++|+.+|+.+.+....     +.+..+..+...   
T Consensus        16 ~~viGq~~v~~~L~~~i~~~-------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~   88 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQG-------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM   88 (559)
T ss_pred             HhccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence            36999999999888887752       145579999999999999999999999873211     111122222111   


Q ss_pred             ---cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          94 ---RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        94 ---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                         .+.......+... ..+...+...-..+++.|+||||+++|+...++.|++.+++++       .+++||++|+..
T Consensus        89 dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-------~~~ifIlatt~~  159 (559)
T PRK05563         89 DVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-------AHVIFILATTEP  159 (559)
T ss_pred             CeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-------CCeEEEEEeCCh
Confidence               1111110111101 1122222222223456999999999999999999999999987       889999988654

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=7.7e-15  Score=129.45  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=87.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc----------Cccchhhhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK----------GTSRFVHKF   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~----------~~~~~~~~~   91 (202)
                      ++++||+.+++.+.+++...       +.|.++||+||+|+|||++|+++|+.+.+....+          .+..+..+.
T Consensus        24 ~dliGq~~~v~~L~~~~~~g-------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~   96 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETG-------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIM   96 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHh
Confidence            36999999999988877642       2566899999999999999999999998732111          011111111


Q ss_pred             ccccc---C-CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695          92 NSRIH---F-PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        92 ~~~~~---~-~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                      -..+.   . ...+..+ . +++. .+.+.+.    ..++.|+||||++.++...+|.|++.||+++       .++.||
T Consensus        97 ~g~h~Dv~e~~a~s~~g-v-d~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-------~~~~fI  166 (598)
T PRK09111         97 EGRHVDVLEMDAASHTG-V-DDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHVKFI  166 (598)
T ss_pred             cCCCCceEEecccccCC-H-HHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-------CCeEEE
Confidence            11100   0 0011111 1 1111 2222232    2346899999999999999999999999987       889999


Q ss_pred             EeeCcChH
Q psy1695         164 FLSNSGGT  171 (202)
Q Consensus       164 ltsn~~~~  171 (202)
                      |+|+...+
T Consensus       167 l~tte~~k  174 (598)
T PRK09111        167 FATTEIRK  174 (598)
T ss_pred             EEeCChhh
Confidence            99865544

>KOG2004|consensus

Probab=99.61  E-value=3.5e-15  Score=130.19  Aligned_cols=147  Identities=17%  Similarity=0.276  Sum_probs=109.3

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHH-hHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKN-HFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV   88 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~-~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~   88 (202)
                      .+++.+.++.|+++-+|-+++++.+.+.+.= .+.+..   ++..+.|+||||+|||++|+.||+.|.+        .|.
T Consensus       399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~---qGkIlCf~GPPGVGKTSI~kSIA~ALnR--------kFf  467 (906)
T KOG2004|consen  399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV---QGKILCFVGPPGVGKTSIAKSIARALNR--------KFF  467 (906)
T ss_pred             hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC---CCcEEEEeCCCCCCcccHHHHHHHHhCC--------ceE
Confidence            3588999999999999999999999988874 343322   4557999999999999999999999866        455


Q ss_pred             hhhcc------cccCCCCchhHHHHHHhHHHHHHhhhhCC--ceEEEEecCCCCCh----hHHHHHHHhcccCc---ccc
Q psy1695          89 HKFNS------RIHFPNENHVSLYRLQLTNWIISNVTACD--RAIFIFDEVDKFPK----GLLDVIIPFIDHHA---VYN  153 (202)
Q Consensus        89 ~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~----~~~~~L~~~le~~~---~~~  153 (202)
                      ++...      ++.+....|++    .+.+.+.+.+..+.  .++++|||+||+..    +-..+|+.+||.-+   +.+
T Consensus       468 RfSvGG~tDvAeIkGHRRTYVG----AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlD  543 (906)
T KOG2004|consen  468 RFSVGGMTDVAEIKGHRRTYVG----AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLD  543 (906)
T ss_pred             EEeccccccHHhhcccceeeec----cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhh
Confidence            54332      22233333443    45666666676654  38999999999975    35788999998643   222


Q ss_pred             -----cccCCceEEEEeeCcChH
Q psy1695         154 -----QISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       154 -----~~~~~~~~~Iltsn~~~~  171 (202)
                           .+|.+++.||.|+|....
T Consensus       544 HYLdVp~DLSkVLFicTAN~idt  566 (906)
T KOG2004|consen  544 HYLDVPVDLSKVLFICTANVIDT  566 (906)
T ss_pred             hccccccchhheEEEEecccccc
Confidence                 259999999999998643

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.60  E-value=1.2e-14  Score=126.14  Aligned_cols=129  Identities=17%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhh------h
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHK------F   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~------~   91 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|+|||++|+++++.+.+.....     .+..+...      +
T Consensus        15 eiiGqe~v~~~L~~~I~~g-------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d   87 (535)
T PRK08451         15 ELIGQESVSKTLSLALDNN-------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID   87 (535)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence            5999999998888777532       2565789999999999999999999998631111     01111111      1


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHH---hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIIS---NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~---~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      ...+.......+.    .+...+..   .-..+++.|+||||+++|+.++++.|++.||+++       .++.||++++.
T Consensus        88 v~eldaas~~gId----~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-------~~t~FIL~ttd  156 (535)
T PRK08451         88 IIEMDAASNRGID----DIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-------SYVKFILATTD  156 (535)
T ss_pred             EEEeccccccCHH----HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-------CceEEEEEECC
Confidence            1111111111111    12222211   1112456899999999999999999999999987       88999999976


Q ss_pred             C
Q psy1695         169 G  169 (202)
Q Consensus       169 ~  169 (202)
                      .
T Consensus       157 ~  157 (535)
T PRK08451        157 P  157 (535)
T ss_pred             h
Confidence            4

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.60  E-value=1.8e-14  Score=126.12  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhh------
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKF------   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~------   91 (202)
                      +++||+.+++.+.+++...       +.|.+++|+||+|+|||++|+.+|+.+.|....     +.+..+..+.      
T Consensus        17 dIIGQe~iv~~L~~aI~~~-------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D   89 (605)
T PRK05896         17 QIIGQELIKKILVNAILNN-------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD   89 (605)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence            5899999998888776532       245579999999999999999999999873111     1111111111      


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ...+.......+...++ +...+...-..+++.|+||||++.|+..+++.|++.|++++       .+++||++|+..
T Consensus        90 iieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-------~~tvfIL~Tt~~  159 (605)
T PRK05896         90 IVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-------KHVVFIFATTEF  159 (605)
T ss_pred             eEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-------CcEEEEEECCCh
Confidence            11111111111211111 11111111122346899999999999999999999999987       789999998754

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.59  E-value=2.1e-14  Score=126.99  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=85.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-------------CcCccchh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-------------DKGTSRFV   88 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-------------~~~~~~~~   88 (202)
                      ++++||+.+++.+.+++...       +.|.+++|+||+|||||++|+.+|+.+.+...             .|.+..+.
T Consensus        16 ~eivGQe~i~~~L~~~i~~~-------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~   88 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMD-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR   88 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence            36999999999887766532       25667999999999999999999999988311             11111111


Q ss_pred             hhh------cccccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695          89 HKF------NSRIHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ  158 (202)
Q Consensus        89 ~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~  158 (202)
                      .+.      ...+.......+.    ++. .+.+.+    ..+++.|+||||+++++...++.|++.|++++       .
T Consensus        89 ~~~~g~~~n~~~~d~~s~~~vd----~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-------~  156 (620)
T PRK14954         89 DFDAGTSLNISEFDAASNNSVD----DIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-------P  156 (620)
T ss_pred             HHhccCCCCeEEecccccCCHH----HHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-------C
Confidence            111      1111111111111    112 122222    23456899999999999999999999999987       7


Q ss_pred             ceEEEEeeCcC
Q psy1695         159 NTIFLFLSNSG  169 (202)
Q Consensus       159 ~~~~Iltsn~~  169 (202)
                      +++||++++..
T Consensus       157 ~tv~IL~t~~~  167 (620)
T PRK14954        157 HAIFIFATTEL  167 (620)
T ss_pred             CeEEEEEeCCh
Confidence            88999988643

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.59  E-value=5.3e-15  Score=121.97  Aligned_cols=110  Identities=23%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+..+.. ...+++.+...    ...+++||||||||||++|+.||.....        +|..+...      ..
T Consensus        24 de~vGQ~HLlg~-~~~lrr~v~~~----~l~SmIl~GPPG~GKTTlA~liA~~~~~--------~f~~~sAv------~~   84 (436)
T COG2256          24 DEVVGQEHLLGE-GKPLRRAVEAG----HLHSMILWGPPGTGKTTLARLIAGTTNA--------AFEALSAV------TS   84 (436)
T ss_pred             HHhcChHhhhCC-CchHHHHHhcC----CCceeEEECCCCCCHHHHHHHHHHhhCC--------ceEEeccc------cc
Confidence            358999887744 24444444432    3337999999999999999999998533        33333211      11


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      .+...++. ...-..........|+|+|||++++...|+.|++.+|+|.+
T Consensus        85 gvkdlr~i-~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i  133 (436)
T COG2256          85 GVKDLREI-IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI  133 (436)
T ss_pred             cHHHHHHH-HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE
Confidence            11111111 11111122234468999999999999999999999999864

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.59  E-value=1.7e-14  Score=126.79  Aligned_cols=134  Identities=14%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-C----cCccchhhhhc-----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-D----KGTSRFVHKFN-----   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~----~~~~~~~~~~~-----   92 (202)
                      +|+||+.+++.+.+++...       +.+.++||+||+|||||++|+.+|+.+.+... .    +.+..+..+..     
T Consensus        17 dIiGQe~v~~~L~~ai~~~-------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD   89 (624)
T PRK14959         17 EVAGQETVKAILSRAAQEN-------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD   89 (624)
T ss_pred             HhcCCHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence            5899999988888777642       13457999999999999999999999987311 0    11111111111     


Q ss_pred             -ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          93 -SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        93 -~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                       ..+.......+...+ .+...+...-...++.||||||+|+|+...++.|++.||+..       .+++||++||....
T Consensus        90 v~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-------~~~ifILaTt~~~k  161 (624)
T PRK14959         90 VVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-------ARVTFVLATTEPHK  161 (624)
T ss_pred             eEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------CCEEEEEecCChhh
Confidence             111111111111111 122222222223456899999999999999999999999976       78999999886544

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.59  E-value=1.9e-14  Score=118.50  Aligned_cols=126  Identities=17%  Similarity=0.268  Sum_probs=86.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+.+++..       .+.|++++|+||+|+|||++|+.+|+.+.+....+.+.++..+..  .   ...
T Consensus         4 ~~i~g~~~~~~~l~~~~~~-------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~--~---~~~   71 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIK-------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP--I---NKK   71 (313)
T ss_pred             hhccCcHHHHHHHHHHHHc-------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc--c---cCC
Confidence            3689999999998877753       225668999999999999999999999987311111122211111  0   111


Q ss_pred             hhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .++ . +++.. +.+.+.    .+++.|+|||++|+|+.+++|.|++.||+++       .+++||++|+..
T Consensus        72 ~i~-v-~~ir~-~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-------~~t~~il~~~~~  133 (313)
T PRK05564         72 SIG-V-DDIRN-IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-------KGVFIILLCENL  133 (313)
T ss_pred             CCC-H-HHHHH-HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCCh
Confidence            121 1 11222 222222    3345899999999999999999999999988       899999998643

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.5e-15  Score=121.41  Aligned_cols=145  Identities=14%  Similarity=0.226  Sum_probs=98.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      +|=|-++.++.+.+++.--+.+|.     +...|.++|||||||||||.+|+++|+...        ..|+++..+.+..
T Consensus       152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgSElVq  223 (406)
T COG1222         152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGSELVQ  223 (406)
T ss_pred             hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccHHHHH
Confidence            466788889999888876443332     134677899999999999999999999843        3566665554422


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt  165 (202)
                         .|+| -...+.+.++...+....+||||||||..           +.++|..++++|.+   .+|. ...|+-+|++
T Consensus       224 ---KYiG-EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q---lDGFD~~~nvKVI~A  296 (406)
T COG1222         224 ---KYIG-EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ---LDGFDPRGNVKVIMA  296 (406)
T ss_pred             ---HHhc-cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh---ccCCCCCCCeEEEEe
Confidence               2222 12234566666667777799999999655           33689999998876   3443 3467889999


Q ss_pred             eCcChHHHHHHHHHHHHhhhH
Q psy1695         166 SNSGGTEIMNTFLELRKSECI  186 (202)
Q Consensus       166 sn~~~~~i~~~~~~~~~~~~~  186 (202)
                      ||...- +-.+   +++.||.
T Consensus       297 TNR~D~-LDPA---LLRPGR~  313 (406)
T COG1222         297 TNRPDI-LDPA---LLRPGRF  313 (406)
T ss_pred             cCCccc-cChh---hcCCCcc
Confidence            987642 2222   3555554

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.58  E-value=2.8e-14  Score=119.42  Aligned_cols=133  Identities=13%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC---------------ccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---------------TSR   86 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---------------~~~   86 (202)
                      .+++||+.+++.+.+++.+.       +.|+++||+||+|+||+++|..+|+.+.+....+.               +..
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~-------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~   91 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSG-------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV   91 (365)
T ss_pred             hhccChHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence            46999999999998777752       25668999999999999999999999988421110               011


Q ss_pred             hhhhhcc---cccC--C---CC-----chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695          87 FVHKFNS---RIHF--P---NE-----NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus        87 ~~~~~~~---~~~~--~---~~-----~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      +..+...   ++..  +   ..     ..+.  .++ .+.+.+.+.    ...+.|+||||+|.|+...+|.|++.++++
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~--Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep  168 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVIT--VDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP  168 (365)
T ss_pred             HHHHHccCCCCeEEEeccccccccccccccc--HHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence            1111101   1100  0   00     1111  111 222223322    234589999999999999999999999998


Q ss_pred             cccccccCCceEEEEeeCcChH
Q psy1695         150 AVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       150 ~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      +       .+++||++|+....
T Consensus       169 p-------~~~~~IL~t~~~~~  183 (365)
T PRK07471        169 P-------ARSLFLLVSHAPAR  183 (365)
T ss_pred             C-------CCeEEEEEECCchh
Confidence            7       78899998877653

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.58  E-value=2.9e-14  Score=125.25  Aligned_cols=132  Identities=15%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcCccchhhhh------
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKGTSRFVHKF------   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~------   91 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|+|||++|+++|+.+.+...     .+.+..+..+.      
T Consensus        17 diiGqe~iv~~L~~~i~~~-------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d   89 (563)
T PRK06647         17 SLEGQDFVVETLKHSIESN-------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD   89 (563)
T ss_pred             HccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence            6999999999988777642       25557999999999999999999999987311     11111122211      


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ...+.+.....+...++ +...+...-..+++.|+||||++.++..+++.|++.+++++       .+++||++|+..
T Consensus        90 v~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-------~~~vfI~~tte~  159 (563)
T PRK06647         90 VIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-------PYIVFIFATTEV  159 (563)
T ss_pred             eEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-------CCEEEEEecCCh
Confidence            11111111111111111 11111111123456899999999999999999999999987       899999988553

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=2.7e-14  Score=124.02  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=84.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC----cCccchhhh------hc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSRFVHK------FN   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~----~~~~~~~~~------~~   92 (202)
                      +++||+.+++.+..++...       +.|+.++|+||||||||++|+++|+.+.+..+.    +.+..+..+      +.
T Consensus        15 dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv   87 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV   87 (504)
T ss_pred             HhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence            5999999999888777652       245568999999999999999999999862111    111111111      11


Q ss_pred             ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          93 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ..+.......+...+ ++...+...-...++.|+||||++.++...++.|++.++++.       .+++||+++|..
T Consensus        88 ~el~~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------~~t~~Il~t~~~  156 (504)
T PRK14963         88 LEIDAASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------EHVIFILATTEP  156 (504)
T ss_pred             EEecccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------CCEEEEEEcCCh
Confidence            111111111111111 111111111112356899999999999999999999999976       788888888754

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.58  E-value=3.3e-14  Score=116.90  Aligned_cols=130  Identities=14%  Similarity=0.248  Sum_probs=86.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc--hhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR--FVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~--~~~~~~~~~~~~~   99 (202)
                      ++++||+.+++.+..++...       +.|.++||+||+|+||+++|.++|+.+.+....+.+..  +...+.++++...
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~-------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~   76 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQN-------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE   76 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEe
Confidence            47999999999998888753       24558999999999999999999999988321111100  0000111111000


Q ss_pred             C------------------------chhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         100 E------------------------NHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       100 ~------------------------~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      +                        ..++  .++ .+.+.+.+..    +++.|+|||++|+|+..++|.|++.||+++ 
T Consensus        77 p~~~~~g~~~~~~~~~~~~~~~~~~~~I~--id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-  152 (314)
T PRK07399         77 PTYQHQGKLITASEAEEAGLKRKAPPQIR--LEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-  152 (314)
T ss_pred             ccccccccccchhhhhhccccccccccCc--HHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-
Confidence            0                        0111  011 2233333433    345999999999999999999999999974 


Q ss_pred             cccccCCceEEEEeeCcC
Q psy1695         152 YNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       152 ~~~~~~~~~~~Iltsn~~  169 (202)
                             +++||++|+..
T Consensus       153 -------~~~fILi~~~~  163 (314)
T PRK07399        153 -------NGTLILIAPSP  163 (314)
T ss_pred             -------CCeEEEEECCh
Confidence                   56889988744

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=2.9e-14  Score=126.54  Aligned_cols=131  Identities=14%  Similarity=0.189  Sum_probs=85.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-------cCccchhhhhccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-------KGTSRFVHKFNSR   94 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-------~~~~~~~~~~~~~   94 (202)
                      .+++||+.+++.+..++....       .+.++||+||+|+|||++|+++|+.+.+....       +.+..+..+....
T Consensus        16 ~~liGq~~i~~~L~~~l~~~r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~   88 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNR-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN   88 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC
Confidence            369999999999887777521       33479999999999999999999999883111       1111111111000


Q ss_pred             ---ccCCCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          95 ---IHFPNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        95 ---~~~~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                         +..... ...+ . +.+ +.+.+...    .+++.|+||||+|+|+.++++.|++.||+++       .+++||++|
T Consensus        89 h~D~~ei~~~~~~~-v-d~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-------~~tvfIL~t  158 (620)
T PRK14948         89 ALDVIEIDAASNTG-V-DNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-------PRVVFVLAT  158 (620)
T ss_pred             CccEEEEeccccCC-H-HHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------cCeEEEEEe
Confidence               000001 1111 1 111 22222222    2456899999999999999999999999987       789999998


Q ss_pred             CcC
Q psy1695         167 NSG  169 (202)
Q Consensus       167 n~~  169 (202)
                      +..
T Consensus       159 ~~~  161 (620)
T PRK14948        159 TDP  161 (620)
T ss_pred             CCh
Confidence            754

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.57  E-value=3.2e-14  Score=122.32  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=85.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhh----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKF----   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~----   91 (202)
                      ++++||+.+++.+.+++...       +.|.+++|+||+|+|||++|+.+|+.+.+....      +.+..+..+.    
T Consensus        17 ~diiGq~~~v~~L~~~i~~~-------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~   89 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFN-------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS   89 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence            36999999999887777642       245579999999999999999999999873111      0011111111    


Q ss_pred             --cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          92 --NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        92 --~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                        ...+.+.....+...+ .+...+...-...++.|+||||+++++.+.++.|++.|++++       .+++||++||..
T Consensus        90 ~d~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-------~~~~~Il~t~~~  161 (451)
T PRK06305         90 LDVLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-------QHVKFFLATTEI  161 (451)
T ss_pred             CceEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-------CCceEEEEeCCh
Confidence              1111111111111111 111122111123456899999999999999999999999976       788899988644

>KOG0734|consensus

Probab=99.57  E-value=1.7e-14  Score=122.45  Aligned_cols=160  Identities=18%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI   95 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   95 (202)
                      -++|-|-++|+..+.+.+. ++.+|.     +.+-|.++||+||||||||.|||++|-+.        ..+|.....+.+
T Consensus       303 F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA--------~VPFF~~sGSEF  373 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA--------GVPFFYASGSEF  373 (752)
T ss_pred             cccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc--------CCCeEeccccch
Confidence            3578999999998866554 333332     14568899999999999999999998873        224433333322


Q ss_pred             cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      .   .-+++ ....-.+.+..+.+.+...||||||+|....           ..+|.|+--||.-.     .....+||.
T Consensus       374 d---Em~VG-vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~-----qNeGiIvig  444 (752)
T KOG0734|consen  374 D---EMFVG-VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK-----QNEGIIVIG  444 (752)
T ss_pred             h---hhhhc-ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC-----cCCceEEEe
Confidence            1   11222 0000023344444555558999999976642           23455554444322     223455566


Q ss_pred             eeCcChHHHHHHHHHHHHhhh---------HHHHhccchhHHHhhcC
Q psy1695         165 LSNSGGTEIMNTFLELRKSEC---------IEFIFQCQPLKVYLKKL  202 (202)
Q Consensus       165 tsn~~~~~i~~~~~~~~~~~~---------~r~~~~~~~~~~~~~~~  202 (202)
                      .||.. +.+..+   +.+.||         |++..|.+.|+.||+|+
T Consensus       445 ATNfp-e~LD~A---L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki  487 (752)
T KOG0734|consen  445 ATNFP-EALDKA---LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI  487 (752)
T ss_pred             ccCCh-hhhhHH---hcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence            66654 444444   345555         46777888899999985

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.57  E-value=4.4e-15  Score=126.68  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=97.4

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF   91 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~   91 (202)
                      .+..+.+.+++.++|++++++.+..++...    .      +++|.||||||||++|++++..+..   .   ..|....
T Consensus        10 ~i~~l~~~l~~~i~gre~vI~lll~aalag----~------hVLL~GpPGTGKT~LAraLa~~~~~---~---~~F~~~~   73 (498)
T PRK13531         10 RISRLSSALEKGLYERSHAIRLCLLAALSG----E------SVFLLGPPGIAKSLIARRLKFAFQN---A---RAFEYLM   73 (498)
T ss_pred             HHHHHHHHHhhhccCcHHHHHHHHHHHccC----C------CEEEECCCChhHHHHHHHHHHHhcc---c---Ccceeee
Confidence            468899999999999999999887666532    1      6899999999999999999998543   1   1111111


Q ss_pred             cccccCCCCchhHH--HHHHh-HHHHHHhhhhC---CceEEEEecCCCCChhHHHHHHHhcccCccccc---ccCCceEE
Q psy1695          92 NSRIHFPNENHVSL--YRLQL-TNWIISNVTAC---DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ---ISFQNTIF  162 (202)
Q Consensus        92 ~~~~~~~~~~~~~~--~~~~l-~~~~~~~l~~~---~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~---~~~~~~~~  162 (202)
                      . .+. .+...++.  ..... .+.+. ....+   ...++++|||.++++..++.|+++|+++.++.+   ......++
T Consensus        74 ~-~ft-tp~DLfG~l~i~~~~~~g~f~-r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfi  150 (498)
T PRK13531         74 T-RFS-TPEEVFGPLSIQALKDEGRYQ-RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLL  150 (498)
T ss_pred             e-eec-CcHHhcCcHHHhhhhhcCchh-hhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEE
Confidence            1 000 00011110  00000 00110 01111   125899999999999999999999999887654   24444556


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhHHHHhccc
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECIEFIFQCQ  193 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~  193 (202)
                      +.+||.-++     -.+++.+..+||.+++.
T Consensus       151 v~ATN~LPE-----~g~~leAL~DRFliri~  176 (498)
T PRK13531        151 VTASNELPE-----ADSSLEALYDRMLIRLW  176 (498)
T ss_pred             EEECCCCcc-----cCCchHHhHhhEEEEEE
Confidence            666664443     22345566667765543

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.56  E-value=2.6e-14  Score=117.75  Aligned_cols=131  Identities=14%  Similarity=0.181  Sum_probs=87.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC----------------ccc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----------------TSR   86 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----------------~~~   86 (202)
                      .++|++.+...+..+...+-.      .|.++||+||||+|||++|.++|+.+++....+.                ..+
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d   75 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGR------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD   75 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCC------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence            467788887777766665432      4446999999999999999999999987321111                011


Q ss_pred             hhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEE
Q psy1695          87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ++.++.     +.........++ .+.+......    ++..|++|||+|.|+.++++.|++.+|+++       .++.|
T Consensus        76 ~lel~~-----s~~~~~~i~~~~-vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-------~~~~~  142 (325)
T COG0470          76 FLELNP-----SDLRKIDIIVEQ-VRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-------KNTRF  142 (325)
T ss_pred             eEEecc-----cccCCCcchHHH-HHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-------CCeEE
Confidence            222211     111111001111 2222222222    456999999999999999999999999988       99999


Q ss_pred             EEeeCcChHH
Q psy1695         163 LFLSNSGGTE  172 (202)
Q Consensus       163 Iltsn~~~~~  172 (202)
                      |++||...+.
T Consensus       143 il~~n~~~~i  152 (325)
T COG0470         143 ILITNDPSKI  152 (325)
T ss_pred             EEEcCChhhc
Confidence            9999955443

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.56  E-value=2.2e-14  Score=130.21  Aligned_cols=154  Identities=19%  Similarity=0.298  Sum_probs=101.7

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      +.++.+.++.|+++.+|++.+++.+.+.+........ . ++-.++|+||||+|||++++.+++.+..        ++.+
T Consensus       310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~-~-~g~~i~l~GppG~GKTtl~~~ia~~l~~--------~~~~  379 (784)
T PRK10787        310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK-I-KGPILCLVGPPGVGKTSLGQSIAKATGR--------KYVR  379 (784)
T ss_pred             cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc-C-CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEE
Confidence            4589999999999999999999999887775432211 1 2225899999999999999999998644        2222


Q ss_pred             hhcccc------cCCCCchhHHHHHHhHHHHHHhhhhC--CceEEEEecCCCCChhH----HHHHHHhcccCc---ccc-
Q psy1695          90 KFNSRI------HFPNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKGL----LDVIIPFIDHHA---VYN-  153 (202)
Q Consensus        90 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~viiiDEid~~~~~~----~~~L~~~le~~~---~~~-  153 (202)
                      +.++..      .+....+.+    ...+.+...+...  ..+|++|||+|++++..    ++.|+++++..+   +.+ 
T Consensus       380 i~~~~~~d~~~i~g~~~~~~g----~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~  455 (784)
T PRK10787        380 MALGGVRDEAEIRGHRRTYIG----SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDH  455 (784)
T ss_pred             EEcCCCCCHHHhccchhccCC----CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecc
Confidence            222111      111111111    1112222222222  34799999999999865    589999999753   222 


Q ss_pred             ----cccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         154 ----QISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       154 ----~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                          ..|.++++||+|+|...  +..++++
T Consensus       456 ~~~~~~dls~v~~i~TaN~~~--i~~aLl~  483 (784)
T PRK10787        456 YLEVDYDLSDVMFVATSNSMN--IPAPLLD  483 (784)
T ss_pred             cccccccCCceEEEEcCCCCC--CCHHHhc
Confidence                25889999999999762  5555443

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.4e-14  Score=116.22  Aligned_cols=143  Identities=22%  Similarity=0.320  Sum_probs=95.4

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc---cCC-CCCce---EEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN---RYH-NTKAL---AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS   85 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~---~~~-~~~pl---~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~   85 (202)
                      ..++++.|++.++||+.|++.+.-++.++...   ... .+.-+   .+++.||+|+|||.||+.+|+.|.-        
T Consensus        52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV--------  123 (408)
T COG1219          52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV--------  123 (408)
T ss_pred             hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC--------
Confidence            57899999999999999999998888775321   110 11222   4999999999999999999999744        


Q ss_pred             chhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhC-------CceEEEEecCCCCCh--------------hHHHHHHH
Q psy1695          86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC-------DRAIFIFDEVDKFPK--------------GLLDVIIP  144 (202)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-------~~~viiiDEid~~~~--------------~~~~~L~~  144 (202)
                      +|.-.+...+  +..+|++.-.+   .-+...+..+       ..++++||||||...              .+|++|++
T Consensus       124 PFaiADATtL--TEAGYVGEDVE---NillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLK  198 (408)
T COG1219         124 PFAIADATTL--TEAGYVGEDVE---NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK  198 (408)
T ss_pred             Ceeeccccch--hhccccchhHH---HHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHH
Confidence            3433333332  23456663222   3333333333       348999999988743              58999999


Q ss_pred             hcccCccc--------------ccccCCceEEEEeeCc
Q psy1695         145 FIDHHAVY--------------NQISFQNTIFLFLSNS  168 (202)
Q Consensus       145 ~le~~~~~--------------~~~~~~~~~~Iltsn~  168 (202)
                      ++|.....              -.+|.+|..||.--..
T Consensus       199 iiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF  236 (408)
T COG1219         199 IIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAF  236 (408)
T ss_pred             HHcCceeccCCCCCCCCCccceEEEcccceeEEecccc
Confidence            99853211              1147777777765543

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.55  E-value=2.7e-14  Score=118.30  Aligned_cols=132  Identities=14%  Similarity=0.345  Sum_probs=86.7

Q ss_pred             hhCCC-hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhhhc---
Q psy1695          22 QHVHG-QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFN---   92 (202)
Q Consensus        22 ~~liG-q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~~~---   92 (202)
                      ..|+| |+.+++.+..++..       .+.|++++|+||+|+||+++|+.+|+.+.+..+.+     .+..+..+..   
T Consensus         5 ~~i~~~q~~~~~~L~~~~~~-------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~h   77 (329)
T PRK08058          5 EQLTALQPVVVKMLQNSIAK-------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNH   77 (329)
T ss_pred             HHHHhhHHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCC
Confidence            35777 88899888777653       22566799999999999999999999998742111     1111111111   


Q ss_pred             ccccC--CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          93 SRIHF--PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        93 ~~~~~--~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      +++..  +....++  .+++. .+.+.+.    .+++.|+||||+|+|+.+++|.|++.||+++       .+++||++|
T Consensus        78 pD~~~i~~~~~~i~--id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-------~~~~~Il~t  147 (329)
T PRK08058         78 PDVHLVAPDGQSIK--KDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-------GGTTAILLT  147 (329)
T ss_pred             CCEEEeccccccCC--HHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-------CCceEEEEe
Confidence            11111  1111111  11222 2222222    3446899999999999999999999999988       899999999


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      +...
T Consensus       148 ~~~~  151 (329)
T PRK08058        148 ENKH  151 (329)
T ss_pred             CChH
Confidence            7543

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.55  E-value=3.2e-14  Score=112.68  Aligned_cols=125  Identities=14%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++.+||+++++.+.-.++.......   ..-+++|+||||.|||++|..+|+++..   +      ++...    ++.-.
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e---~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n------~k~ts----Gp~le   89 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGE---ALDHVLLFGPPGLGKTTLAHIIANELGV---N------LKITS----GPALE   89 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCC---CcCeEEeeCCCCCcHHHHHHHHHHHhcC---C------eEecc----ccccc
Confidence            3689999999999888887654432   3338999999999999999999999744   1      11111    11100


Q ss_pred             hhHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccCccc--cc---------ccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---------ISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---------~~~~~~~~Iltsn~~  169 (202)
                      .        .+.+...+.. .+.+|+|||||+++++.+-+.|.+.||...+-  -+         .+...-++|-+|+..
T Consensus        90 K--------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~  161 (332)
T COG2255          90 K--------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA  161 (332)
T ss_pred             C--------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence            1        1222223322 24689999999999999999999999987642  11         366666777777654


Q ss_pred             h
Q psy1695         170 G  170 (202)
Q Consensus       170 ~  170 (202)
                      .
T Consensus       162 G  162 (332)
T COG2255         162 G  162 (332)
T ss_pred             c
Confidence            4

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.55  E-value=7.4e-14  Score=123.74  Aligned_cols=132  Identities=17%  Similarity=0.245  Sum_probs=84.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc------Cccchhhhhccc-
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK------GTSRFVHKFNSR-   94 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~------~~~~~~~~~~~~-   94 (202)
                      ++++||+.+++.+..++...       +.+.+++|+||+|+|||++|+.+++.+.+....+      .+..+..+.... 
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~-------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~   88 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEG-------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSA   88 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCC
Confidence            36999999999987777642       1455789999999999999999999998732111      011111111000 


Q ss_pred             --cc-CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695          95 --IH-FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus        95 --~~-~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                        +. .......+ . ++ ...+.+.+.    ...+.||||||+++++...++.|++.|++.+       .+++||++++
T Consensus        89 ~d~~~i~~~~~~~-v-d~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------~~tv~Il~t~  158 (585)
T PRK14950         89 VDVIEMDAASHTS-V-DD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------PHAIFILATT  158 (585)
T ss_pred             CeEEEEeccccCC-H-HH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------CCeEEEEEeC
Confidence              00 00001111 1 11 122222222    2346899999999999999999999999976       7889999886


Q ss_pred             cCh
Q psy1695         168 SGG  170 (202)
Q Consensus       168 ~~~  170 (202)
                      ...
T Consensus       159 ~~~  161 (585)
T PRK14950        159 EVH  161 (585)
T ss_pred             Chh
Confidence            543

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.54  E-value=9.9e-14  Score=123.08  Aligned_cols=130  Identities=19%  Similarity=0.267  Sum_probs=86.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc------CcCccchhhhh----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK------DKGTSRFVHKF----   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~------~~~~~~~~~~~----   91 (202)
                      ++|+||+.+++.+.+++...       +.|.++||+||+|+|||++|+.+|+.+.|...      .+.+..+..+.    
T Consensus        17 ~~viGq~~~~~~L~~~i~~~-------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~   89 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATN-------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS   89 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence            36999999999988777642       25557999999999999999999999986311      11111111111    


Q ss_pred             --cccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          92 --NSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        92 --~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                        ...+.......+.    ++.. +.+.+.    .+++.|+||||+++++...++.|++.||+++       .+++||++
T Consensus        90 ~n~~~ld~~~~~~vd----~Ir~-li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-------~~tifIL~  157 (614)
T PRK14971         90 YNIHELDAASNNSVD----DIRN-LIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-------SYAIFILA  157 (614)
T ss_pred             CceEEecccccCCHH----HHHH-HHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------CCeEEEEE
Confidence              1111111111111    1222 222222    2346899999999999999999999999987       88999999


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      |+...
T Consensus       158 tt~~~  162 (614)
T PRK14971        158 TTEKH  162 (614)
T ss_pred             eCCch
Confidence            97543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.53  E-value=1.6e-13  Score=118.84  Aligned_cols=130  Identities=16%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~~~   97 (202)
                      +++||+.+++.+.+++...       +.+.+++|+||+|+|||++|+.+|+.+.+....     +.+..+..+....+..
T Consensus        17 diiGq~~i~~~L~~~i~~~-------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d   89 (486)
T PRK14953         17 EVIGQEIVVRILKNAVKLQ-------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD   89 (486)
T ss_pred             HccChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence            5999999999888777642       144478999999999999999999999862111     1111122221111000


Q ss_pred             ---CCC-chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          98 ---PNE-NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        98 ---~~~-~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                         -.. ...+ ...  .+.+.+.+.    .+.+.|+||||++.++..+++.|++.+++++       .+++||++|+..
T Consensus        90 ~~eidaas~~g-vd~--ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-------~~~v~Il~tt~~  159 (486)
T PRK14953         90 LIEIDAASNRG-IDD--IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-------PRTIFILCTTEY  159 (486)
T ss_pred             EEEEeCccCCC-HHH--HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-------CCeEEEEEECCH
Confidence               000 1111 111  122333333    2345899999999999999999999999987       788999888643

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.52  E-value=1.6e-13  Score=114.34  Aligned_cols=132  Identities=16%  Similarity=0.272  Sum_probs=87.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-----CcC------ccchhhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-----DKG------TSRFVHK   90 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-----~~~------~~~~~~~   90 (202)
                      ..++||+.+.+.+..++...       +.|..++|+||+|+|||++|+.+|+.+.+...     .+.      +..+..+
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~g-------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i   95 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREG-------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI   95 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcC-------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence            46999999999998888743       24557999999999999999999999987210     100      0111111


Q ss_pred             hcc---c---ccCC--CC-----chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccc
Q psy1695          91 FNS---R---IHFP--NE-----NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN  153 (202)
Q Consensus        91 ~~~---~---~~~~--~~-----~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~  153 (202)
                      ...   +   +..+  ..     ..++  .++ ...+.+.+.    .+.+.|+||||+|.|+...+|.|++.+|+++   
T Consensus        96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~--vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp---  169 (351)
T PRK09112         96 AQGAHPNLLHITRPFDEKTGKFKTAIT--VDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP---  169 (351)
T ss_pred             HcCCCCCEEEeecccccccccccccCC--HHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC---
Confidence            110   0   1001  00     1111  112 223333333    3456899999999999999999999999987   


Q ss_pred             cccCCceEEEEeeCcCh
Q psy1695         154 QISFQNTIFLFLSNSGG  170 (202)
Q Consensus       154 ~~~~~~~~~Iltsn~~~  170 (202)
                          .+++||++|+...
T Consensus       170 ----~~~~fiLit~~~~  182 (351)
T PRK09112        170 ----ARALFILISHSSG  182 (351)
T ss_pred             ----CCceEEEEECChh
Confidence                7889999987654

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.51  E-value=3.2e-13  Score=112.86  Aligned_cols=129  Identities=20%  Similarity=0.284  Sum_probs=83.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhh------
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKF------   91 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~------   91 (202)
                      +++||+.+++.+..++...       +.|.+++|+||+|+|||++|+.+++.+.+....     +.+..+..+.      
T Consensus        15 ~iig~~~~~~~l~~~~~~~-------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~   87 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNG-------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD   87 (355)
T ss_pred             hccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            6899999999888777532       245579999999999999999999998763110     0011111111      


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                      ...+.......+.    . ...+.+.+..    .+..||+|||+|.++...++.|++.+++++       .+++||+++|
T Consensus        88 ~~~~~~~~~~~~~----~-~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-------~~~~lIl~~~  155 (355)
T TIGR02397        88 VIEIDAASNNGVD----D-IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-------EHVVFILATT  155 (355)
T ss_pred             EEEeeccccCCHH----H-HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-------cceeEEEEeC
Confidence            0011111001111    1 1122222222    345899999999999999999999999876       7888889886


Q ss_pred             cCh
Q psy1695         168 SGG  170 (202)
Q Consensus       168 ~~~  170 (202)
                      ...
T Consensus       156 ~~~  158 (355)
T TIGR02397       156 EPH  158 (355)
T ss_pred             CHH
Confidence            543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.50  E-value=1.6e-13  Score=118.63  Aligned_cols=128  Identities=16%  Similarity=0.128  Sum_probs=77.3

Q ss_pred             hCCChHHHHHHHHHHHHHhH---hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          23 HVHGQELAISHICGALKNHF---QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~---~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      +|-|.+.+++.+.+....+.   .... -..|.++||+||||||||++|+++|+.+..        +++.+..+.+... 
T Consensus       229 dvgGl~~lK~~l~~~~~~~~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~--------~~~~l~~~~l~~~-  298 (489)
T CHL00195        229 DIGGLDNLKDWLKKRSTSFSKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQL--------PLLRLDVGKLFGG-  298 (489)
T ss_pred             HhcCHHHHHHHHHHHHHHhhHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEEhHHhccc-
Confidence            57788888887776443321   1111 235668999999999999999999999532        4444444433222 


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                        +++..... ...+..........||+|||+|++..            .+.+.++..|++..       .++++|.|||
T Consensus       299 --~vGese~~-l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------~~V~vIaTTN  368 (489)
T CHL00195        299 --IVGESESR-MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK-------SPVFVVATAN  368 (489)
T ss_pred             --ccChHHHH-HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC-------CceEEEEecC
Confidence              22211111 22233333444558999999987633            13455666666533       5677888888


Q ss_pred             cCh
Q psy1695         168 SGG  170 (202)
Q Consensus       168 ~~~  170 (202)
                      ...
T Consensus       369 ~~~  371 (489)
T CHL00195        369 NID  371 (489)
T ss_pred             Chh
Confidence            654

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=3.2e-13  Score=113.56  Aligned_cols=126  Identities=18%  Similarity=0.263  Sum_probs=81.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccch--hhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRF--VHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~~~~~~~~~~~   99 (202)
                      ++++||+.+++.+.+.+...       ..|.+++|+||+|+|||++|+++++.+.+   .+.....  .......+....
T Consensus        17 ~~iig~~~~~~~l~~~i~~~-------~~~~~~L~~G~~G~GKt~~a~~la~~l~~---~~~~~~~~~~~~~~~~l~~~~   86 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENN-------HLAQALLFCGPRGVGKTTCARILARKINQ---PGYDDPNEDFSFNIFELDAAS   86 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC---CCCCCCCCCCCcceEEecccc
Confidence            35899999998887777642       24557999999999999999999999876   2211110  011111111111


Q ss_pred             CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         100 ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .....    . ...+.+.+.    ..+..||++||++.++...++.|++.+++++       .+++||++++..
T Consensus        87 ~~~~~----~-i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------~~~~~Il~~~~~  148 (367)
T PRK14970         87 NNSVD----D-IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------AHAIFILATTEK  148 (367)
T ss_pred             CCCHH----H-HHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-------CceEEEEEeCCc
Confidence            01111    1 111112111    2345899999999999999999999999865       678888888754

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.49  E-value=2e-13  Score=118.10  Aligned_cols=154  Identities=19%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC--cCccchhhhhccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVHKFNSR   94 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~   94 (202)
                      +++.|.+..++.+.+++...+.++.     +-..|.+++|+||||||||++|+++|+.+......  .....++.+..+.
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e  261 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE  261 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence            3588999999999999865322211     02245579999999999999999999997541000  0011122221111


Q ss_pred             ccCCCCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCC
Q psy1695          95 IHFPNENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQ  158 (202)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~  158 (202)
                      +..   .+.+..... ...+....    ......|+||||+|.+-.            .+.+.|+..|+.-.     ...
T Consensus       262 Ll~---kyvGete~~-ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~-----~~~  332 (512)
T TIGR03689       262 LLN---KYVGETERQ-IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE-----SLD  332 (512)
T ss_pred             hcc---cccchHHHH-HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----cCC
Confidence            111   122211111 12222222    223457999999987632            13456666665421     235


Q ss_pred             ceEEEEeeCcChHHHHHHHHHHHHhhhHHH
Q psy1695         159 NTIFLFLSNSGGTEIMNTFLELRKSECIEF  188 (202)
Q Consensus       159 ~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~  188 (202)
                      +.++|.+||.... +..+   +++.||.+.
T Consensus       333 ~ViVI~ATN~~d~-LDpA---LlRpGRfD~  358 (512)
T TIGR03689       333 NVIVIGASNREDM-IDPA---ILRPGRLDV  358 (512)
T ss_pred             ceEEEeccCChhh-CCHh---hcCccccce
Confidence            7888999987542 3333   345555433

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.49  E-value=1.9e-13  Score=113.40  Aligned_cols=141  Identities=11%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |..+|+...+.     +++||+.+++.+.+++..    +   ..| +++|+||||||||++|+++++.+.+   .+....
T Consensus         5 w~~ky~P~~~~-----~~~g~~~~~~~L~~~~~~----~---~~~-~lll~Gp~GtGKT~la~~~~~~l~~---~~~~~~   68 (337)
T PRK12402          5 WTEKYRPALLE-----DILGQDEVVERLSRAVDS----P---NLP-HLLVQGPPGSGKTAAVRALARELYG---DPWENN   68 (337)
T ss_pred             hHHhhCCCcHH-----HhcCCHHHHHHHHHHHhC----C---CCc-eEEEECCCCCCHHHHHHHHHHHhcC---cccccc
Confidence            33445555543     588999998888776653    1   123 5899999999999999999999876   221112


Q ss_pred             hhhhhcccccC-------CCCchhHHH----------HHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHh
Q psy1695          87 FVHKFNSRIHF-------PNENHVSLY----------RLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPF  145 (202)
Q Consensus        87 ~~~~~~~~~~~-------~~~~~~~~~----------~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~  145 (202)
                      ++.++...+..       ..+.....+          .+.+...+.....    ..+..+|||||++.+++..++.|..+
T Consensus        69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~  148 (337)
T PRK12402         69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRI  148 (337)
T ss_pred             eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHH
Confidence            22222221110       001000000          0011111111111    13357999999999999999999999


Q ss_pred             cccCcccccccCCceEEEEeeCcCh
Q psy1695         146 IDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       146 le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ++...       .++.||++++...
T Consensus       149 le~~~-------~~~~~Il~~~~~~  166 (337)
T PRK12402        149 MEQYS-------RTCRFIIATRQPS  166 (337)
T ss_pred             HHhcc-------CCCeEEEEeCChh
Confidence            98765       5677888887543

>PRK12377 putative replication protein; Provisional

Probab=99.49  E-value=2e-13  Score=108.49  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  105 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (202)
                      ||..++..+...+..+....      .+++|+||||||||++|.++++.+..   .+....++..  ..+....   ...
T Consensus        82 ~~~~a~~~a~~~a~~~~~~~------~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~--~~l~~~l---~~~  147 (248)
T PRK12377         82 GQRYALSQAKSIADELMTGC------TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTV--PDVMSRL---HES  147 (248)
T ss_pred             hHHHHHHHHHHHHHHHHhcC------CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEH--HHHHHHH---HHH
Confidence            55556666666655554322      26899999999999999999999876   4322222211  1110000   000


Q ss_pred             HHHH-hHHHHHHhhhhCCceEEEEecC--CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         106 YRLQ-LTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       106 ~~~~-l~~~~~~~l~~~~~~viiiDEi--d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      +... ....+...+  ...++|||||+  +..++..++.|.++++...      .+...+|+|||+..+.+.+.+.
T Consensus       148 ~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~------~~~~ptiitSNl~~~~l~~~~~  215 (248)
T PRK12377        148 YDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRT------ASMRSVGMLTNLNHEAMSTLLG  215 (248)
T ss_pred             HhccchHHHHHHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHH------hcCCCEEEEcCCCHHHHHHHhh
Confidence            0000 011122222  23589999999  6667788889999999753      0346789999999988876544

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.49  E-value=4.8e-13  Score=110.20  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=85.0

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |+.+|+...+.     +++||+.+++.+...+..       .+.|..++|+||+|+|||++|+++++.+..        +
T Consensus        11 w~~kyrP~~~~-----~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~--------~   70 (316)
T PHA02544         11 WEQKYRPSTID-----ECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA--------E   70 (316)
T ss_pred             ceeccCCCcHH-----HhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc--------c
Confidence            44566666654     589999998888777652       124556888999999999999999998532        2


Q ss_pred             hhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          87 FVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      +..++...     .. .......+.......-...+.+|+||||+|.+ ..+.++.|..++++..       .++.||+|
T Consensus        71 ~~~i~~~~-----~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-------~~~~~Ilt  137 (316)
T PHA02544         71 VLFVNGSD-----CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-------KNCSFIIT  137 (316)
T ss_pred             ceEeccCc-----cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-------CCceEEEE
Confidence            22222221     11 11111111111111101134689999999999 6678888988899865       77899999


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      ||...
T Consensus       138 ~n~~~  142 (316)
T PHA02544        138 ANNKN  142 (316)
T ss_pred             cCChh
Confidence            98653

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.49  E-value=5e-13  Score=109.97  Aligned_cols=128  Identities=11%  Similarity=0.139  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---cccc-
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---SRIH-   96 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~~~~-   96 (202)
                      .+..+.+.+.+++.+       .+.|++++|+||+|+||+++|+.+|+.+.|..+.     |.+..+..+..   +++. 
T Consensus         6 W~~~~~~~l~~~~~~-------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~   78 (325)
T PRK06871          6 WLQPTYQQITQAFQQ-------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI   78 (325)
T ss_pred             chHHHHHHHHHHHHc-------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence            344445555444443       2256689999999999999999999999984211     11111211111   1111 


Q ss_pred             -CC-CCchhHHHHHHhHHHHHHhh----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          97 -FP-NENHVSLYRLQLTNWIISNV----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        97 -~~-~~~~~~~~~~~l~~~~~~~l----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                       .+ ....++  .++ .+.+.+.+    ..+++.|+|||++|+|+..++|.|++.||+++       .+++||++|+...
T Consensus        79 i~p~~~~~I~--id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------~~~~fiL~t~~~~  148 (325)
T PRK06871         79 LEPIDNKDIG--VDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-------PNTYFLLQADLSA  148 (325)
T ss_pred             EccccCCCCC--HHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChH
Confidence             01 111222  111 22233333    33456999999999999999999999999998       8999999997643

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.48  E-value=3.6e-13  Score=111.63  Aligned_cols=111  Identities=8%  Similarity=0.117  Sum_probs=74.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc---ccccC--CCC--chhHHHHHHhHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN---SRIHF--PNE--NHVSLYRLQLTNWIISN  117 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~---~~~~~--~~~--~~~~~~~~~l~~~~~~~  117 (202)
                      .|++++|+||+|+||+++|.++|+.+.|..+.     |.+..+..+..   +++..  +..  ..++  .++ .+.+.+.
T Consensus        23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~--idq-iR~l~~~   99 (334)
T PRK07993         23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG--VDA-VREVTEK   99 (334)
T ss_pred             cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC--HHH-HHHHHHH
Confidence            67789999999999999999999999884221     11111222211   11111  111  1122  112 2233333


Q ss_pred             hh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         118 VT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       118 l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      +.    .+++.|+|||++|+|+.++.|.|++.||+++       .+++||++|+...
T Consensus       100 ~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~~  149 (334)
T PRK07993        100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------ENTWFFLACREPA  149 (334)
T ss_pred             HhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence            33    3456999999999999999999999999998       9999999997643

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.47  E-value=5.7e-13  Score=109.63  Aligned_cols=138  Identities=19%  Similarity=0.321  Sum_probs=87.7

Q ss_pred             cccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695           6 KFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS   85 (202)
Q Consensus         6 ~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~   85 (202)
                      -|+.+|++..+.     +++||+.+++.+..++..    +.   .| +++|+||+|+|||++++.+++.+.+   .+...
T Consensus         6 ~w~~kyrP~~~~-----~~~g~~~~~~~l~~~i~~----~~---~~-~~ll~G~~G~GKt~~~~~l~~~l~~---~~~~~   69 (319)
T PRK00440          6 IWVEKYRPRTLD-----EIVGQEEIVERLKSYVKE----KN---MP-HLLFAGPPGTGKTTAALALARELYG---EDWRE   69 (319)
T ss_pred             ccchhhCCCcHH-----HhcCcHHHHHHHHHHHhC----CC---CC-eEEEECCCCCCHHHHHHHHHHHHcC---Ccccc
Confidence            356667776654     488999999888777653    11   33 5799999999999999999999866   32111


Q ss_pred             chhhhhcccccCCCCchhHHHHHHhHHHHHHh-hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISN-VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      .++..+.+     ...........+....... +...+..+++|||++.++...++.|+++++...       .++.+|+
T Consensus        70 ~~i~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------~~~~lIl  137 (319)
T PRK00440         70 NFLELNAS-----DERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------QNTRFIL  137 (319)
T ss_pred             ceEEeccc-----cccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------CCCeEEE
Confidence            22222111     1111110111111111110 111345799999999999999999999998865       6778899


Q ss_pred             eeCcChH
Q psy1695         165 LSNSGGT  171 (202)
Q Consensus       165 tsn~~~~  171 (202)
                      ++|....
T Consensus       138 ~~~~~~~  144 (319)
T PRK00440        138 SCNYSSK  144 (319)
T ss_pred             EeCCccc
Confidence            8886543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.47  E-value=2.7e-13  Score=97.17  Aligned_cols=106  Identities=20%  Similarity=0.300  Sum_probs=68.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCC
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVD  132 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid  132 (202)
                      ++|+||||||||++|+.+|+.+..        +++.+....+.......   ....+...+.. ..... ..|++|||+|
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~--------~~~~i~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~vl~iDe~d   68 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF--------PFIEIDGSELISSYAGD---SEQKIRDFFKK-AKKSAKPCVLFIDEID   68 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS--------EEEEEETTHHHTSSTTH---HHHHHHHHHHH-HHHTSTSEEEEEETGG
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc--------ccccccccccccccccc---ccccccccccc-ccccccceeeeeccch
Confidence            589999999999999999999632        34444444433221111   22222333333 33333 5899999999


Q ss_pred             CCChhH-----------HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         133 KFPKGL-----------LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       133 ~~~~~~-----------~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      .+.+..           .+.|+..+++...    ...+.++|+|||. .+.+.+.
T Consensus        69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~----~~~~~~vI~ttn~-~~~i~~~  118 (132)
T PF00004_consen   69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSS----KNSRVIVIATTNS-PDKIDPA  118 (132)
T ss_dssp             GTSHHCSTSSSHHHHHHHHHHHHHHHTTTT----TSSSEEEEEEESS-GGGSCHH
T ss_pred             hcccccccccccccccccceeeeccccccc----ccccceeEEeeCC-hhhCCHh
Confidence            998765           7888888887541    1246899999998 4444443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.47  E-value=2.1e-13  Score=115.43  Aligned_cols=134  Identities=15%  Similarity=0.176  Sum_probs=81.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|.+.+++.+.+.+...+.++.     +...|.+++|+||||||||++|+++|+.+..        .++.+..+.+.
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--------~~i~v~~~~l~  202 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSELV  202 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--------CEEEeehHHHh
Confidence            4688999999999988865433211     1235668999999999999999999998533        34444333221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ..   +++.. ......+.+........||+|||+|.+           +..++..+.+++..-.-  ..+..++.+|+|
T Consensus       203 ~~---~~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~~~~~v~VI~a  276 (389)
T PRK03992        203 QK---FIGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG--FDPRGNVKIIAA  276 (389)
T ss_pred             Hh---hccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc--cCCCCCEEEEEe
Confidence            11   11101 111223333334444579999999987           24456666666643110  012357888999


Q ss_pred             eCcC
Q psy1695         166 SNSG  169 (202)
Q Consensus       166 sn~~  169 (202)
                      ||..
T Consensus       277 Tn~~  280 (389)
T PRK03992        277 TNRI  280 (389)
T ss_pred             cCCh
Confidence            9875

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=5.5e-13  Score=110.27  Aligned_cols=112  Identities=14%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccc---c--CCCC--chhHHHHHHhHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRI---H--FPNE--NHVSLYRLQLTNWIISN  117 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~---~--~~~~--~~~~~~~~~l~~~~~~~  117 (202)
                      .|++++|+||+|+||+++|+.+|+.+.+..+.     |.+..+..+....+   .  .+..  ..++  .++ .+.+.+.
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~--id~-iR~l~~~   97 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK--VDQ-VRELVSF   97 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC--HHH-HHHHHHH
Confidence            67689999999999999999999999984211     11122222211111   0  0110  1122  112 2223333


Q ss_pred             hh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         118 VT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       118 l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      +.    .+++.|+|||++|+|+.+++|.|++.||+++       .+++||++|+....
T Consensus        98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------~~~~fiL~t~~~~~  148 (328)
T PRK05707         98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-------GDTVLLLISHQPSR  148 (328)
T ss_pred             HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-------CCeEEEEEECChhh
Confidence            33    3456899999999999999999999999988       89999999987543

>PRK04195 replication factor C large subunit; Provisional

Probab=99.46  E-value=4.7e-13  Score=116.30  Aligned_cols=131  Identities=17%  Similarity=0.229  Sum_probs=87.0

Q ss_pred             cccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695           6 KFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS   85 (202)
Q Consensus         6 ~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~   85 (202)
                      .|+.+|+...+.     +++||+.+++.+..++..+..+.    .+.+++|+||||||||++|+++|+.+..        
T Consensus         3 ~W~eKyrP~~l~-----dlvg~~~~~~~l~~~l~~~~~g~----~~~~lLL~GppG~GKTtla~ala~el~~--------   65 (482)
T PRK04195          3 PWVEKYRPKTLS-----DVVGNEKAKEQLREWIESWLKGK----PKKALLLYGPPGVGKTSLAHALANDYGW--------   65 (482)
T ss_pred             CchhhcCCCCHH-----HhcCCHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHcCC--------
Confidence            366677777775     49999999999999988876331    2447999999999999999999998532        


Q ss_pred             chhhhhcccccCCCCchhHHHHHHhHHHHHHhh-----hhCCceEEEEecCCCCCh----hHHHHHHHhcccCccccccc
Q psy1695          86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV-----TACDRAIFIFDEVDKFPK----GLLDVIIPFIDHHAVYNQIS  156 (202)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-----~~~~~~viiiDEid~~~~----~~~~~L~~~le~~~~~~~~~  156 (202)
                      .++.++.+..     ....    .+...+....     ...+..||||||+|.++.    ..++.|+.+++.        
T Consensus        66 ~~ielnasd~-----r~~~----~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--------  128 (482)
T PRK04195         66 EVIELNASDQ-----RTAD----VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--------  128 (482)
T ss_pred             CEEEEccccc-----ccHH----HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--------
Confidence            2222222211     0000    1111111111     112468999999999976    567888888886        


Q ss_pred             CCceEEEEeeCcChH
Q psy1695         157 FQNTIFLFLSNSGGT  171 (202)
Q Consensus       157 ~~~~~~Iltsn~~~~  171 (202)
                       .+..+|+++|....
T Consensus       129 -~~~~iIli~n~~~~  142 (482)
T PRK04195        129 -AKQPIILTANDPYD  142 (482)
T ss_pred             -CCCCEEEeccCccc
Confidence             45567788876543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.45  E-value=8.1e-13  Score=109.07  Aligned_cols=139  Identities=8%  Similarity=0.083  Sum_probs=82.4

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhh----hhCCc
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV----TACDR  123 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~  123 (202)
                      -+.|+.++|+||||||||.+|+++|+.+..        +++.+..+++.....+...   ..+...+..+-    .....
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~--------~~i~vsa~eL~sk~vGEsE---k~IR~~F~~A~~~a~~~~aP  213 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI--------EPIVMSAGELESENAGEPG---KLIRQRYREAADIIKKKGKM  213 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC--------CeEEEEHHHhhcCcCCcHH---HHHHHHHHHHHHHhhccCCC
Confidence            457889999999999999999999999633        4555555555444333322   22222222221    12335


Q ss_pred             eEEEEecCCCCChh-----------H-HHHHHHhcccCccc-------ccccCCceEEEEeeCcChHHHHHHHHHHHHhh
Q psy1695         124 AIFIFDEVDKFPKG-----------L-LDVIIPFIDHHAVY-------NQISFQNTIFLFLSNSGGTEIMNTFLELRKSE  184 (202)
Q Consensus       124 ~viiiDEid~~~~~-----------~-~~~L~~~le~~~~~-------~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~  184 (202)
                      .||||||||..-+.           + ...|+.++|.....       .......+.+|.|||.... +-.+   +++.|
T Consensus       214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-LDpA---LlRpG  289 (413)
T PLN00020        214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-LYAP---LIRDG  289 (413)
T ss_pred             eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-CCHh---HcCCC
Confidence            89999999866431           1 24677777753211       1123466788888877643 2222   35555


Q ss_pred             hH-------HHHhccchhHHHhhc
Q psy1695         185 CI-------EFIFQCQPLKVYLKK  201 (202)
Q Consensus       185 ~~-------r~~~~~~~~~~~~~~  201 (202)
                      |.       ...-++..|+.++|+
T Consensus       290 RfDk~i~lPd~e~R~eIL~~~~r~  313 (413)
T PLN00020        290 RMEKFYWAPTREDRIGVVHGIFRD  313 (413)
T ss_pred             CCCceeCCCCHHHHHHHHHHHhcc
Confidence            54       335555567766664

>KOG0730|consensus

Probab=99.45  E-value=3.2e-13  Score=117.20  Aligned_cols=162  Identities=16%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|+++.+..+.+++..-+.++.     ..+.|.++|||||||||||++|+++|++...        +|+.+-...+..
T Consensus       435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--------nFlsvkgpEL~s  506 (693)
T KOG0730|consen  435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--------NFLSVKGPELFS  506 (693)
T ss_pred             hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--------CeeeccCHHHHH
Confidence            456699999999888876433322     1246678999999999999999999999433        444443333322


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      .   +++. .+.....++...+++...|+||||||.+..           .+++.|+.-|+...     ...++++|..|
T Consensus       507 k---~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----~~k~V~ViAAT  577 (693)
T KOG0730|consen  507 K---YVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----ALKNVLVIAAT  577 (693)
T ss_pred             H---hcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-----ccCcEEEEecc
Confidence            1   2221 122233444444555559999999976533           34566666655422     22466666666


Q ss_pred             CcChHHHHHHHHH------HHHhhhHHHHhccchhHHHhhcC
Q psy1695         167 NSGGTEIMNTFLE------LRKSECIEFIFQCQPLKVYLKKL  202 (202)
Q Consensus       167 n~~~~~i~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~  202 (202)
                      |.. +.|..++++      +.--+-++..-++..||.++||.
T Consensus       578 NRp-d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm  618 (693)
T KOG0730|consen  578 NRP-DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM  618 (693)
T ss_pred             CCh-hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence            654 444444331      22233346667777788888874

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.45  E-value=1.1e-12  Score=107.73  Aligned_cols=131  Identities=13%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--Cccchhhhh---cccccCC
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKF---NSRIHFP   98 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~---~~~~~~~   98 (202)
                      ...|..+.+.+..++..       .+.|++++|+||+|+||+++|..+|+.+.+....+  .+..+..+.   -+++..-
T Consensus         6 yPW~~~~~~~l~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i   78 (319)
T PRK08769          6 SPWQQRAYDQTVAALDA-------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV   78 (319)
T ss_pred             cccHHHHHHHHHHHHHc-------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence            34566666666655543       23676899999999999999999999999832111  000110010   0111100


Q ss_pred             --CCc--------hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          99 --NEN--------HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        99 --~~~--------~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                        .+.        .++  .++ .+.+.+.+..    +++.|+|||++|+|+.+++|.|++.||+++       .+++||+
T Consensus        79 ~~~p~~~~~k~~~~I~--idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~~~fiL  148 (319)
T PRK08769         79 SFIPNRTGDKLRTEIV--IEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-------PGRYLWL  148 (319)
T ss_pred             ecCCCccccccccccc--HHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-------CCCeEEE
Confidence              010        111  122 2233333333    345899999999999999999999999998       8999999


Q ss_pred             eeCcChH
Q psy1695         165 LSNSGGT  171 (202)
Q Consensus       165 tsn~~~~  171 (202)
                      +|+....
T Consensus       149 ~~~~~~~  155 (319)
T PRK08769        149 ISAQPAR  155 (319)
T ss_pred             EECChhh
Confidence            9986543

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.44  E-value=6.4e-14  Score=116.17  Aligned_cols=137  Identities=19%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN   92 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~   92 (202)
                      ...+...+.+.++|++.++..+..++..   + .      +++|.||||||||.+|+.+|+.+..        ++.++.+
T Consensus        15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~---~-~------~vll~G~PG~gKT~la~~lA~~l~~--------~~~~i~~   76 (329)
T COG0714          15 LGKIRSELEKVVVGDEEVIELALLALLA---G-G------HVLLEGPPGVGKTLLARALARALGL--------PFVRIQC   76 (329)
T ss_pred             HHHHHhhcCCeeeccHHHHHHHHHHHHc---C-C------CEEEECCCCccHHHHHHHHHHHhCC--------CeEEEec
Confidence            4455666777899988777766555442   2 1      5899999999999999999999643        3444433


Q ss_pred             ccccCCCCchhH--HHHHHhHHHHHHhhhhCCc--e---EEEEecCCCCChhHHHHHHHhcccCcccccc----cCC-ce
Q psy1695          93 SRIHFPNENHVS--LYRLQLTNWIISNVTACDR--A---IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI----SFQ-NT  160 (202)
Q Consensus        93 ~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~--~---viiiDEid~~~~~~~~~L~~~le~~~~~~~~----~~~-~~  160 (202)
                      .....+. ...+  .+.......-...+...|.  .   ++++|||+++++.+++.|+++|+++.++...    ... ..
T Consensus        77 t~~l~p~-d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f  155 (329)
T COG0714          77 TPDLLPS-DLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPF  155 (329)
T ss_pred             CCCCCHH-HhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence            2111100 0011  0111000000000111111  3   9999999999999999999999998765432    233 34


Q ss_pred             EEEEeeCc
Q psy1695         161 IFLFLSNS  168 (202)
Q Consensus       161 ~~Iltsn~  168 (202)
                      ++|.|+|.
T Consensus       156 ~viaT~Np  163 (329)
T COG0714         156 IVIATQNP  163 (329)
T ss_pred             EEEEccCc
Confidence            45566674

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.44  E-value=1e-12  Score=107.76  Aligned_cols=125  Identities=11%  Similarity=0.197  Sum_probs=79.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+..++.+..++......+.   .+.+++|+||||||||++|+++|+.+..   .     +........     .
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~-----~~~~~~~~~-----~   67 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQE---ALDHLLLYGPPGLGKTTLAHIIANEMGV---N-----LKITSGPAL-----E   67 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCCHHHHHHHHHHHhCC---C-----EEEeccchh-----c
Confidence            3699999999999888876544322   4447899999999999999999998643   1     111111100     0


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc----cc-------ccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQ-------ISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~----~~-------~~~~~~~~Iltsn~~  169 (202)
                      ..+    .+...+.. +  ....+++|||++++++..++.|+.++++....    .+       .......+|.+||..
T Consensus        68 ~~~----~l~~~l~~-~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~  139 (305)
T TIGR00635        68 KPG----DLAAILTN-L--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA  139 (305)
T ss_pred             Cch----hHHHHHHh-c--ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence            011    11111111 1  23479999999999999999999998876521    00       123345667766664

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0733|consensus

Probab=99.44  E-value=3.4e-13  Score=116.23  Aligned_cols=157  Identities=13%  Similarity=0.153  Sum_probs=93.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      +|=|++++..++..++..-...+.     +-.-|-++||+||||||||.+|+++|++.      +  .+|+.+-...+. 
T Consensus       512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g--~NFisVKGPELl-  582 (802)
T KOG0733|consen  512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------G--ANFISVKGPELL-  582 (802)
T ss_pred             hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------c--CceEeecCHHHH-
Confidence            345566777777776655322211     12346689999999999999999999983      2  345555433331 


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                        ..|+|. .+.-.++++...+.+...||||||+|.+-+           .+.|.|+.-||...     +-+++.+|.+|
T Consensus       583 --NkYVGE-SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~-----~R~gV~viaAT  654 (802)
T KOG0733|consen  583 --NKYVGE-SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE-----ERRGVYVIAAT  654 (802)
T ss_pred             --HHHhhh-HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc-----cccceEEEeec
Confidence              123442 222233444444555568999999988855           36777777666431     22444555555


Q ss_pred             CcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhh
Q psy1695         167 NSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLK  200 (202)
Q Consensus       167 n~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~  200 (202)
                      | .++.|..++   ++.||.         .-..+...||.+.|
T Consensus       655 N-RPDiIDpAi---LRPGRlDk~LyV~lPn~~eR~~ILK~~tk  693 (802)
T KOG0733|consen  655 N-RPDIIDPAI---LRPGRLDKLLYVGLPNAEERVAILKTITK  693 (802)
T ss_pred             C-CCcccchhh---cCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence            5 455565553   455554         34456666777766

>KOG0739|consensus

Probab=99.44  E-value=5.9e-13  Score=106.34  Aligned_cols=132  Identities=19%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC---CCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY---HNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~---~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      +|.|.+.|++.+.+++.--+.-|.   +.++|. ++||+||||||||+||+++|.+..        +.|..+..+++...
T Consensus       134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSSDLvSK  205 (439)
T KOG0739|consen  134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSDLVSK  205 (439)
T ss_pred             hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehHHHHHH
Confidence            578899999999988864221111   123554 699999999999999999999842        33443333333222


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-------hHHH-----HHHHhcccCcccccccCCceEEEEee
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-------GLLD-----VIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-------~~~~-----~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      +-+    ..+.+...+.++.++...+||||||||.+..       ++..     .|.|+-.     .+.+...+.+.-.|
T Consensus       206 WmG----ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-----VG~d~~gvLVLgAT  276 (439)
T KOG0739|consen  206 WMG----ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-----VGNDNDGVLVLGAT  276 (439)
T ss_pred             Hhc----cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-----cccCCCceEEEecC
Confidence            211    2345677788888888889999999987743       1111     1222111     12466777777888


Q ss_pred             CcChH
Q psy1695         167 NSGGT  171 (202)
Q Consensus       167 n~~~~  171 (202)
                      |+...
T Consensus       277 NiPw~  281 (439)
T KOG0739|consen  277 NIPWV  281 (439)
T ss_pred             CCchh
Confidence            88753

>PRK08116 hypothetical protein; Validated

Probab=99.44  E-value=5.1e-13  Score=107.64  Aligned_cols=129  Identities=19%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHH-
Q psy1695          30 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-  108 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  108 (202)
                      |+..+.+.+..+.....   .+.+++|+|++|||||+||.++++.+..   .+...-++  ....+...   ....|.. 
T Consensus        96 a~~~a~~y~~~~~~~~~---~~~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~--~~~~ll~~---i~~~~~~~  164 (268)
T PRK08116         96 AYKIARKYVKKFEEMKK---ENVGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFV--NFPQLLNR---IKSTYKSS  164 (268)
T ss_pred             HHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEE--EHHHHHHH---HHHHHhcc
Confidence            45555555554432211   3346899999999999999999999866   32111111  11111000   0000000 


Q ss_pred             --HhHHHHHHhhhhCCceEEEEecC--CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         109 --QLTNWIISNVTACDRAIFIFDEV--DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       109 --~l~~~~~~~l~~~~~~viiiDEi--d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                        .-...+.+.+.  ..++|||||+  ++.+...++.|..+++...      .+...+|+|||..++.+.+.+
T Consensus       165 ~~~~~~~~~~~l~--~~dlLviDDlg~e~~t~~~~~~l~~iin~r~------~~~~~~IiTsN~~~~eL~~~~  229 (268)
T PRK08116        165 GKEDENEIIRSLV--NADLLILDDLGAERDTEWAREKVYNIIDSRY------RKGLPTIVTTNLSLEELKNQY  229 (268)
T ss_pred             ccccHHHHHHHhc--CCCEEEEecccCCCCCHHHHHHHHHHHHHHH------HCCCCEEEECCCCHHHHHHHH
Confidence              00111222233  2479999999  6677788889999988642      145678999999998876653

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.43  E-value=1.2e-12  Score=110.09  Aligned_cols=66  Identities=20%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc----C--CCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~----~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+..+.+.|++.|+||+.|++.+..++..++...    .  ....|.+++|+||||||||++|+++|+.+.
T Consensus         4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~   75 (443)
T PRK05201          4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (443)
T ss_pred             CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46788999999999999999999999997642111    0  011356899999999999999999999864

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.43  E-value=2.1e-12  Score=98.80  Aligned_cols=110  Identities=14%  Similarity=0.248  Sum_probs=69.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCc-----Cccchhhhhcc---ccc--CCCCchhHHHHHHhHHHHHHhhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-----GTSRFVHKFNS---RIH--FPNENHVSLYRLQLTNWIISNVT  119 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-----~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~l~  119 (202)
                      .|..++|+||+|+|||++|+.+++.+.+..+..     .+..+..+...   .+.  .......+  .+. ...+.+.+.
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~--~~~-i~~i~~~~~   89 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK--VDQ-VRELVEFLS   89 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC--HHH-HHHHHHHHc
Confidence            556799999999999999999999998731111     01111111100   000  01111111  111 112223332


Q ss_pred             ----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         120 ----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       120 ----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                          ..+..|+||||+|+++...++.|+..|++++       .++.||+++|..
T Consensus        90 ~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~  136 (188)
T TIGR00678        90 RTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-------PNTLFILITPSP  136 (188)
T ss_pred             cCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence                2445899999999999999999999999977       789999998744

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG2028|consensus

Probab=99.43  E-value=3.5e-13  Score=110.21  Aligned_cols=113  Identities=23%  Similarity=0.353  Sum_probs=71.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +.+||+..+.+ ...++..+....   .| +++||||||||||++|+.|+.....   .  .-.|+..  +.    ....
T Consensus       139 dyvGQ~hlv~q-~gllrs~ieq~~---ip-SmIlWGppG~GKTtlArlia~tsk~---~--Syrfvel--SA----t~a~  202 (554)
T KOG2028|consen  139 DYVGQSHLVGQ-DGLLRSLIEQNR---IP-SMILWGPPGTGKTTLARLIASTSKK---H--SYRFVEL--SA----TNAK  202 (554)
T ss_pred             HhcchhhhcCc-chHHHHHHHcCC---CC-ceEEecCCCCchHHHHHHHHhhcCC---C--ceEEEEE--ec----cccc
Confidence            57888888777 344455555433   44 6999999999999999999988433   1  1112211  10    0111


Q ss_pred             hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      +...+..+.+.-.+........|+||||+++++...|+.+++.+|+|.+
T Consensus       203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I  251 (554)
T KOG2028|consen  203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI  251 (554)
T ss_pred             hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce
Confidence            1111111112212222334458999999999999999999999999864

>KOG0733|consensus

Probab=99.43  E-value=1.8e-12  Score=111.85  Aligned_cols=150  Identities=13%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|-+..+..+.+.+.. ..++.     +-..|.++|||||||||||.+|+++|.++.        .+|+.+....+..
T Consensus       191 diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isApeivS  261 (802)
T KOG0733|consen  191 DIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAPEIVS  261 (802)
T ss_pred             hccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecchhhhc
Confidence            455667777777666654 22221     012455799999999999999999999963        3566555544433


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh-----------HHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~-----------~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...   |..++.+. .+++........|+||||||...+.           +...|+..||+-... ...-..+++|.+|
T Consensus       262 GvS---GESEkkiR-elF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIgAT  336 (802)
T KOG0733|consen  262 GVS---GESEKKIR-ELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIGAT  336 (802)
T ss_pred             ccC---cccHHHHH-HHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEecC
Confidence            222   21222222 3333333334479999999888662           456677777764311 1223557888888


Q ss_pred             CcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         167 NSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       167 n~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                      |.....  +  .-++++||.+-.+
T Consensus       337 nRPDsl--D--paLRRaGRFdrEI  356 (802)
T KOG0733|consen  337 NRPDSL--D--PALRRAGRFDREI  356 (802)
T ss_pred             CCCccc--C--HHHhcccccccee
Confidence            876542  1  2258888875443

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.43  E-value=1.4e-12  Score=105.35  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---cccc--CCCC--chhHHHHHHhHHHHHHhhh---
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---SRIH--FPNE--NHVSLYRLQLTNWIISNVT---  119 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~--~~~~--~~~~~~~~~l~~~~~~~l~---  119 (202)
                      .|++++|+||+|+||+.+|..+|+.+.|.   .....+..+..   ++++  .+..  ..++  .++ .+.+.+.+.   
T Consensus        18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~---~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~--idq-iR~l~~~~~~~p   91 (290)
T PRK05917         18 VPSAIILHGQDLSNLSARAYELASLILKE---TSPEAAYKISQKIHPDIHEFSPQGKGRLHS--IET-PRAIKKQIWIHP   91 (290)
T ss_pred             cCeeEeeECCCCCcHHHHHHHHHHHHhCC---CCccHHHHHhcCCCCCEEEEecCCCCCcCc--HHH-HHHHHHHHhhCc
Confidence            67789999999999999999999999983   11111111111   1111  1111  1122  111 223333333   


Q ss_pred             -hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         120 -ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       120 -~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                       .+++.|+|||++|+|+.+++|.|+++||+++       .+++||++|+....
T Consensus        92 ~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-------~~~~fiL~~~~~~~  137 (290)
T PRK05917         92 YESPYKIYIIHEADRMTLDAISAFLKVLEDPP-------QHGVIILTSAKPQR  137 (290)
T ss_pred             cCCCceEEEEechhhcCHHHHHHHHHHhhcCC-------CCeEEEEEeCChhh
Confidence             3455999999999999999999999999998       89999999987543

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.42  E-value=4e-12  Score=104.41  Aligned_cols=129  Identities=11%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC----cCccchhhhhcc---ccc-
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD----KGTSRFVHKFNS---RIH-   96 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~----~~~~~~~~~~~~---~~~-   96 (202)
                      ..+....+.+.+++.+       .+.|++++|+||.|+||+.+|+.+|+.+.+....    |.+..+..+...   ++. 
T Consensus         6 PWl~~~~~~l~~~~~~-------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~   78 (319)
T PRK06090          6 PWLVPVWQNWKAGLDA-------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV   78 (319)
T ss_pred             ccHHHHHHHHHHHHHc-------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE
Confidence            3445555555444432       2366689999999999999999999999984221    111112222111   111 


Q ss_pred             -CCC--CchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695          97 -FPN--ENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus        97 -~~~--~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                       .+.  ...++  .+++ +.+.+.+.    .+++.|+|||++|+|+..++|.|++.||+++       .+++||++|+..
T Consensus        79 i~p~~~~~~I~--vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~t~~~  148 (319)
T PRK06090         79 IKPEKEGKSIT--VEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------PNCLFLLVTHNQ  148 (319)
T ss_pred             EecCcCCCcCC--HHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-------CCeEEEEEECCh
Confidence             111  11222  1122 23333333    3446999999999999999999999999998       899999999865


Q ss_pred             h
Q psy1695         170 G  170 (202)
Q Consensus       170 ~  170 (202)
                      .
T Consensus       149 ~  149 (319)
T PRK06090        149 K  149 (319)
T ss_pred             h
Confidence            4

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.42  E-value=1.5e-12  Score=104.66  Aligned_cols=126  Identities=13%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------cccCCCCc
Q psy1695          28 ELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RIHFPNEN  101 (202)
Q Consensus        28 ~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~  101 (202)
                      ..+++.+.+.+..++....      +++|.||||||||++|+++|+.+..        +++.+.+.      .+.+...+
T Consensus         4 t~~~~~l~~~~l~~l~~g~------~vLL~G~~GtGKT~lA~~la~~lg~--------~~~~i~~~~~~~~~dllg~~~~   69 (262)
T TIGR02640         4 TDAVKRVTSRALRYLKSGY------PVHLRGPAGTGKTTLAMHVARKRDR--------PVMLINGDAELTTSDLVGSYAG   69 (262)
T ss_pred             CHHHHHHHHHHHHHHhcCC------eEEEEcCCCCCHHHHHHHHHHHhCC--------CEEEEeCCccCCHHHHhhhhcc
Confidence            3455666666666655433      5789999999999999999987532        22222211      11111100


Q ss_pred             hh--HHHHHH---------------hHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-c--------
Q psy1695         102 HV--SLYRLQ---------------LTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I--------  155 (202)
Q Consensus       102 ~~--~~~~~~---------------l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-~--------  155 (202)
                      +.  ..+...               ..+.+..+..  ...+++|||++++++++++.|+++|+++.+... .        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~  147 (262)
T TIGR02640        70 YTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVD  147 (262)
T ss_pred             cchhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence            00  000000               0011222222  236999999999999999999999998764321 1        


Q ss_pred             cCCceEEEEeeCcC
Q psy1695         156 SFQNTIFLFLSNSG  169 (202)
Q Consensus       156 ~~~~~~~Iltsn~~  169 (202)
                      ...+..+|+|+|..
T Consensus       148 ~~~~frvIaTsN~~  161 (262)
T TIGR02640       148 VHPEFRVIFTSNPV  161 (262)
T ss_pred             cCCCCEEEEeeCCc
Confidence            12356789999975

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.41  E-value=1.4e-12  Score=111.35  Aligned_cols=104  Identities=23%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             hCCChHHHHHH---HHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          23 HVHGQELAISH---ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        23 ~liGq~~a~~~---l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      +++||+.++..   +.+.+.    ..    .+.+++|+||||||||++|+++++.+..        .++.+....     
T Consensus        13 d~vGq~~~v~~~~~L~~~i~----~~----~~~~ilL~GppGtGKTtLA~~ia~~~~~--------~~~~l~a~~-----   71 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIE----AG----RLSSMILWGPPGTGKTTLARIIAGATDA--------PFEALSAVT-----   71 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHH----cC----CCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEeccc-----
Confidence            59999988766   544443    21    3337899999999999999999998543        222222111     


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      . .+..... +..............|++|||+++++...++.|++.++++
T Consensus        72 ~-~~~~ir~-ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~  119 (413)
T PRK13342         72 S-GVKDLRE-VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG  119 (413)
T ss_pred             c-cHHHHHH-HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC
Confidence            0 1111111 1111111122235689999999999999999999999984

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.41  E-value=1.4e-12  Score=109.61  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ...+.++|++.++||++|++.+..++..++....      ..-.|.+++|+||||||||++|+++|+.+.
T Consensus         3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390         3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5678899999999999999999999987532111      012456799999999999999999999964

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0738|consensus

Probab=99.40  E-value=2e-12  Score=106.42  Aligned_cols=136  Identities=13%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC---CCCCc-eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY---HNTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~---~~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++|.|-++|++.+.+|+---+-.|.   +..+| .++|++||||||||.||+++|.+..        ..|..+..+.+..
T Consensus       212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--------tTFFNVSsstltS  283 (491)
T KOG0738|consen  212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--------TTFFNVSSSTLTS  283 (491)
T ss_pred             HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--------CeEEEechhhhhh
Confidence            3588999999999999875221111   12244 4799999999999999999999831        3444444444322


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC------------hhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~------------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      .+.+    -.+.+..-++++.+.....+|||||||.+.            ..+-+.|+..||.-.  ...+.++.+|++.
T Consensus       284 KwRG----eSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~--~t~e~~k~VmVLA  357 (491)
T KOG0738|consen  284 KWRG----ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ--GTLENSKVVMVLA  357 (491)
T ss_pred             hhcc----chHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc--cccccceeEEEEe
Confidence            2222    223456667777676667899999996653            245667777777421  1123345666665


Q ss_pred             e-CcChH
Q psy1695         166 S-NSGGT  171 (202)
Q Consensus       166 s-n~~~~  171 (202)
                      + |...+
T Consensus       358 ATN~PWd  364 (491)
T KOG0738|consen  358 ATNFPWD  364 (491)
T ss_pred             ccCCCcc
Confidence            5 55554

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.40  E-value=1e-13  Score=98.34  Aligned_cols=122  Identities=15%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc-cccCCCCchhH--HHHHHhHHHHHHhhhhCC--ceEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHFPNENHVS--LYRLQLTNWIISNVTACD--RAIFI  127 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~--~~vii  127 (202)
                      |+|++|+||+|||++|+++|+.+..        .|.++.+. ++..++  ..+  .|... .+.  -.+...|  ..|++
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~--------~f~RIq~tpdllPsD--i~G~~v~~~~-~~~--f~~~~GPif~~ill   67 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGL--------SFKRIQFTPDLLPSD--ILGFPVYDQE-TGE--FEFRPGPIFTNILL   67 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT----------EEEEE--TT--HHH--HHEEEEEETT-TTE--EEEEE-TT-SSEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCC--------ceeEEEecCCCCccc--ceeeeeeccC-CCe--eEeecChhhhceee
Confidence            5799999999999999999999643        12222110 000000  000  00000 000  0011122  27999


Q ss_pred             EecCCCCChhHHHHHHHhcccCcccc-c--ccCCceE-EEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         128 FDEVDKFPKGLLDVIIPFIDHHAVYN-Q--ISFQNTI-FLFLSNSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       128 iDEid~~~~~~~~~L~~~le~~~~~~-~--~~~~~~~-~Iltsn~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                      +||++++++.+|+.|+++|+++.++. +  ....+.. +|.|-|....   +..+++..+..+||.+
T Consensus        68 ~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~---~Gty~Lpea~~DRF~~  131 (131)
T PF07726_consen   68 ADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQ---EGTYPLPEAQLDRFMM  131 (131)
T ss_dssp             EETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT-----S------HHHHTTSSE
T ss_pred             ecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcccc---CceecCCHHHhccccC
Confidence            99999999999999999999998763 2  3444544 4556676432   3567788888888864

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PHA02244 ATPase-like protein

Probab=99.40  E-value=1.9e-12  Score=107.32  Aligned_cols=129  Identities=12%  Similarity=0.110  Sum_probs=83.1

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc----ccc
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN----SRI   95 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~   95 (202)
                      ++...+|+..........+.+++....      +++|+||||||||++|+++|+.+..        +++.++.    ..+
T Consensus        94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~------PVLL~GppGtGKTtLA~aLA~~lg~--------pfv~In~l~d~~~L  159 (383)
T PHA02244         94 IDTTKIASNPTFHYETADIAKIVNANI------PVFLKGGAGSGKNHIAEQIAEALDL--------DFYFMNAIMDEFEL  159 (383)
T ss_pred             CCCcccCCCHHHHHHHHHHHHHHhcCC------CEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecChHHHhh
Confidence            344567777777777777777665432      5799999999999999999998533        2222211    011


Q ss_pred             cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695          96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS  168 (202)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~  168 (202)
                      .+.... .+.+.   ...+..++.  ..++++|||++.++++++..|..+++.+.+...    ....+..+|+|+|.
T Consensus       160 ~G~i~~-~g~~~---dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~  230 (383)
T PHA02244        160 KGFIDA-NGKFH---ETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT  230 (383)
T ss_pred             cccccc-ccccc---chHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence            000000 01121   122323332  357999999999999999999999987653321    13467899999998

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.39  E-value=1e-12  Score=114.59  Aligned_cols=131  Identities=17%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|++.+++.+.+.+.. +..+.     ....|.+++|+||||||||++|+++|..+..        +++.+..+.+.
T Consensus        55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--------~~~~i~~~~~~  125 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--------PFFSISGSDFV  125 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------CeeeccHHHHH
Confidence            3689999999988876653 22110     1235567999999999999999999998532        33333222211


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ...   .+..... ...+..........||+|||+|.+..              ...+.|+..|+...     +..+.++
T Consensus       126 ~~~---~g~~~~~-l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-----~~~~v~v  196 (495)
T TIGR01241       126 EMF---VGVGASR-VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----TNTGVIV  196 (495)
T ss_pred             HHH---hcccHHH-HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-----CCCCeEE
Confidence            100   0000011 12222333334457999999988643              23445555554321     2245777


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.+||...
T Consensus       197 I~aTn~~~  204 (495)
T TIGR01241       197 IAATNRPD  204 (495)
T ss_pred             EEecCChh
Confidence            88887753

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.39  E-value=1.3e-12  Score=110.49  Aligned_cols=133  Identities=14%  Similarity=0.224  Sum_probs=77.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+..++.+.+++...+.++.     +-..|.+++|+||||||||++|+++|+.+..        .++.+..+.+.
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--------~fi~i~~s~l~  216 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--------TFIRVVGSEFV  216 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEehHHHH
Confidence            3689999999999998875433221     1235668999999999999999999998533        23322222111


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLF  164 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Il  164 (202)
                      .   .+.+.. ......+..........||+|||+|.+.           ..++..+.+++..-   ++. ...++.+|+
T Consensus       217 ~---k~~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l---d~~~~~~~v~VI~  289 (398)
T PTZ00454        217 Q---KYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM---DGFDQTTNVKVIM  289 (398)
T ss_pred             H---Hhcchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh---hccCCCCCEEEEE
Confidence            1   111111 1112223333344455899999998762           23444455544331   111 124678899


Q ss_pred             eeCcC
Q psy1695         165 LSNSG  169 (202)
Q Consensus       165 tsn~~  169 (202)
                      +||..
T Consensus       290 aTN~~  294 (398)
T PTZ00454        290 ATNRA  294 (398)
T ss_pred             ecCCc
Confidence            99864

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.38  E-value=3e-12  Score=116.46  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=83.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|++.+++.+.+.+...+..+.     ....|.+++|+||||||||++|+++|+.+..        +++.+..+.+.
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--------~fi~v~~~~l~  524 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--------NFIAVRGPEIL  524 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEehHHHh
Confidence            3588999999999888875332211     1235667999999999999999999998533        34444333332


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh------------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~------------~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      ..   +++ ..+.....+..........|+||||+|.+.+            .+.+.|+..|+.-.     ...+.++|.
T Consensus       525 ~~---~vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~v~vI~  595 (733)
T TIGR01243       525 SK---WVG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----ELSNVVVIA  595 (733)
T ss_pred             hc---ccC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----CCCCEEEEE
Confidence            22   222 1111133344444555668999999987632            24566666666311     236788888


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      +||...
T Consensus       596 aTn~~~  601 (733)
T TIGR01243       596 ATNRPD  601 (733)
T ss_pred             eCCChh
Confidence            888754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.38  E-value=3.2e-12  Score=105.91  Aligned_cols=131  Identities=11%  Similarity=0.049  Sum_probs=90.6

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  103 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
                      ++|+..+++.+.+.+.+......      +++|+|++||||+++|++|......   .  ..+|+.+++..+...   . 
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~------pVLI~GE~GtGK~~lAr~iH~~s~r---~--~~pfv~vnc~~~~~~---~-   65 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDR------PVLIIGERGTGKELIAARLHYLSKR---W--QGPLVKLNCAALSEN---L-   65 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCC------CEEEECCCCChHHHHHHHHHHhcCc---c--CCCeEEEeCCCCChH---H-
Confidence            57999999999999988765433      6899999999999999999887432   1  357777776543211   0 


Q ss_pred             HHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCc
Q psy1695         104 SLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNS  168 (202)
Q Consensus       104 ~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~  168 (202)
                        ....+.+           .-.+.+.....++++|||++.++...|..|+.+++++.+.. +   ....++.+|++||.
T Consensus        66 --l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~  143 (329)
T TIGR02974        66 --LDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA  143 (329)
T ss_pred             --HHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence              0000000           00112344456899999999999999999999999876432 1   12346788999987


Q ss_pred             ChH
Q psy1695         169 GGT  171 (202)
Q Consensus       169 ~~~  171 (202)
                      ...
T Consensus       144 ~l~  146 (329)
T TIGR02974       144 DLP  146 (329)
T ss_pred             hHH
Confidence            643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.38  E-value=2.9e-12  Score=106.15  Aligned_cols=112  Identities=12%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhhcc---ccc--CCC------------------
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKFNS---RIH--FPN------------------   99 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~~~---~~~--~~~------------------   99 (202)
                      +.|++++|+||+|+||+++|+.+|+.+.|..+.      |.+..+..+...   ++.  .+.                  
T Consensus        19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~   98 (342)
T PRK06964         19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA   98 (342)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence            367789999999999999999999999984211      111111111111   110  000                  


Q ss_pred             --C--------chhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695         100 --E--------NHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus       100 --~--------~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                        .        ..++  .++ .+.+.+.+.    .+++.|+|||++|+|+.++.|.|++.||+++       .+++||++
T Consensus        99 ~~~~~k~~~~~~~I~--idq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------~~t~fiL~  168 (342)
T PRK06964         99 DEGGKKTKAPSKEIK--IEQ-VRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPP-------PGTVFLLV  168 (342)
T ss_pred             hcccccccccccccC--HHH-HHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------cCcEEEEE
Confidence              0        1111  111 222333333    3345899999999999999999999999998       89999999


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      |+...
T Consensus       169 t~~~~  173 (342)
T PRK06964        169 SARID  173 (342)
T ss_pred             ECChh
Confidence            97754

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.38  E-value=2.4e-12  Score=108.18  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI   95 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   95 (202)
                      .+++.|.+.+++.+.+++...+..+.     ....|.+++|+||||||||++|+++|+.+..        .++.+....+
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--------~~~~v~~~~l  192 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--------TFIRVVGSEL  192 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--------CEEecchHHH
Confidence            35799999999999998865433211     0234668999999999999999999998643        2333222211


Q ss_pred             cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCccccc-ccCCceEEE
Q psy1695          96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQ-ISFQNTIFL  163 (202)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~-~~~~~~~~I  163 (202)
                      ..   .+.+. .......+..........||+|||+|.+.           +..+..+.+++..-.   + ....++.||
T Consensus       193 ~~---~~~g~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld---~~~~~~~v~vI  265 (364)
T TIGR01242       193 VR---KYIGE-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD---GFDPRGNVKVI  265 (364)
T ss_pred             HH---HhhhH-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh---CCCCCCCEEEE
Confidence            11   11110 11112222233333344799999998873           334555666554311   1 122578889


Q ss_pred             EeeCcC
Q psy1695         164 FLSNSG  169 (202)
Q Consensus       164 ltsn~~  169 (202)
                      +|||..
T Consensus       266 ~ttn~~  271 (364)
T TIGR01242       266 AATNRP  271 (364)
T ss_pred             EecCCh
Confidence            999865

Many proteins may score above the trusted cutoff because an internal

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.38  E-value=2.3e-12  Score=113.00  Aligned_cols=121  Identities=19%  Similarity=0.301  Sum_probs=73.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC--cCccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD--KGTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~  100 (202)
                      +++||+.+++.+..++.    .    ..|.+++|+||||||||++|+++++........  ....+|+.+++........
T Consensus        66 ~iiGqs~~i~~l~~al~----~----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~  137 (531)
T TIGR02902        66 EIIGQEEGIKALKAALC----G----PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER  137 (531)
T ss_pred             HeeCcHHHHHHHHHHHh----C----CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence            59999999988875532    1    134578999999999999999998875331000  0123455555432111000


Q ss_pred             ch----hH-----HHHH--Hh-----HHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         101 NH----VS-----LYRL--QL-----TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       101 ~~----~~-----~~~~--~l-----~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      ..    ++     .|..  .+     ...-.+.+..+..++++|||++++++..|+.|+++|+++.+
T Consensus       138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~  204 (531)
T TIGR02902       138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKV  204 (531)
T ss_pred             ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCee
Confidence            00    00     0000  00     00001223445568999999999999999999999998653

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.38  E-value=4.3e-12  Score=105.22  Aligned_cols=125  Identities=12%  Similarity=0.210  Sum_probs=79.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+..++.+...+........   .+.+++|+||||||||++|+++|+.+..   .     +........     .
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~---~~~~~ll~GppG~GKT~la~~ia~~l~~---~-----~~~~~~~~~-----~   88 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGE---ALDHVLLYGPPGLGKTTLANIIANEMGV---N-----IRITSGPAL-----E   88 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCC---CCCcEEEECCCCccHHHHHHHHHHHhCC---C-----eEEEecccc-----c
Confidence            3599999999999888876543322   3447999999999999999999999643   1     111111100     0


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc----cc-------ccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY----NQ-------ISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~----~~-------~~~~~~~~Iltsn~~  169 (202)
                      ..+    .+...+ ..+  ....|++|||++.++...++.|...++.....    .+       .......+|.+||..
T Consensus        89 ~~~----~l~~~l-~~l--~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~  160 (328)
T PRK00080         89 KPG----DLAAIL-TNL--EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA  160 (328)
T ss_pred             ChH----HHHHHH-Hhc--ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence            011    111111 111  24579999999999998889998888875421    11       122345677777764

>KOG0731|consensus

Probab=99.38  E-value=1.8e-12  Score=115.25  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.++|++.+.+.+.- +.+|.     +-+.|.++||+||||||||.||+++|-+.        ..+|+.+..+++.
T Consensus       311 kDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGSEFv  381 (774)
T KOG0731|consen  311 KDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGSEFV  381 (774)
T ss_pred             ccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechHHHH
Confidence            4799999999999777653 22221     13467789999999999999999999983        2344444333221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh---------------hHHHHHHHhcccCcccccccCCceE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTI  161 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~---------------~~~~~L~~~le~~~~~~~~~~~~~~  161 (202)
                      ....+ .+   ..-.+.+....+.....+|++||+|....               ..+|.|+.-||...     ...+++
T Consensus       382 E~~~g-~~---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-----~~~~vi  452 (774)
T KOG0731|consen  382 EMFVG-VG---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-----TSKGVI  452 (774)
T ss_pred             HHhcc-cc---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc-----CCCcEE
Confidence            11000 00   00023333334444458999999965532               24555555555422     124566


Q ss_pred             EEEeeCcChHHHHHHHHHHHHhhhHHHHh---------ccchhHHHhhcC
Q psy1695         162 FLFLSNSGGTEIMNTFLELRKSECIEFIF---------QCQPLKVYLKKL  202 (202)
Q Consensus       162 ~Iltsn~~~~~i~~~~~~~~~~~~~r~~~---------~~~~~~~~~~~~  202 (202)
                      |+.+||.. +.+..+   +++.||.+..+         +.+.++++++++
T Consensus       453 ~~a~tnr~-d~ld~a---llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~  498 (774)
T KOG0731|consen  453 VLAATNRP-DILDPA---LLRPGRFDRQIQIDLPDVKGRASILKVHLRKK  498 (774)
T ss_pred             EEeccCCc-cccCHH---hcCCCccccceeccCCchhhhHHHHHHHhhcc
Confidence            66666654 444333   56777765444         444577777653

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.37  E-value=1.1e-12  Score=100.66  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=75.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-c-cchhhhhc----ccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-T-SRFVHKFN----SRI   95 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-~-~~~~~~~~----~~~   95 (202)
                      ++|+||+.++..+.-+...    .      .+++|+||||||||++|+.++..|-.-..... . ..+..+..    ..+
T Consensus         3 ~dI~GQe~aKrAL~iAAaG----~------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~   72 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAAG----G------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGL   72 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHHC----C--------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EE
T ss_pred             hhhcCcHHHHHHHHHHHcC----C------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCce
Confidence            4699999999988766653    1      27999999999999999999988654211100 0 00000000    000


Q ss_pred             cCCC----C-chhHHHHHHhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-----c-cCCce
Q psy1695          96 HFPN----E-NHVSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----I-SFQNT  160 (202)
Q Consensus        96 ~~~~----~-~~~~~~~~~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-----~-~~~~~  160 (202)
                      ....    + ..+.  ...+.+    ...+.+..+..+|+|+||+..+++.+++.|++.|+++.++..     + --.+.
T Consensus        73 ~~~~Pfr~phhs~s--~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f  150 (206)
T PF01078_consen   73 IRQRPFRAPHHSAS--EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARF  150 (206)
T ss_dssp             EE---EEEE-TT----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred             ecCCCcccCCCCcC--HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence            0000    0 0000  000000    011234455569999999999999999999999999875421     1 22355


Q ss_pred             EEEEeeCcCh
Q psy1695         161 IFLFLSNSGG  170 (202)
Q Consensus       161 ~~Iltsn~~~  170 (202)
                      .+|.|+|..+
T Consensus       151 ~lv~a~NPcp  160 (206)
T PF01078_consen  151 LLVAAMNPCP  160 (206)
T ss_dssp             EEEEEE-S--
T ss_pred             EEEEEecccc
Confidence            7788888743

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=99.37  E-value=9.5e-13  Score=99.92  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=64.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  128 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii  128 (202)
                      +.+++|+||+|||||++|.++++.+..   .+....|+...  +..+....... . +     ......+..  .+++||
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~~-~-~-----~~~~~~l~~--~dlLil  114 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSDG-S-Y-----EELLKRLKR--VDLLIL  114 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCCT-T-H-----CHHHHHHHT--SSCEEE
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceecccccccccc-c-h-----hhhcCcccc--ccEecc
Confidence            347999999999999999999999876   44333333221  11111110000 0 1     111222332  479999


Q ss_pred             ecCCCC--ChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         129 DEVDKF--PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       129 DEid~~--~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                      ||+...  +....+.|.++++...       .+..+|+|||...+.+.+.+.+
T Consensus       115 DDlG~~~~~~~~~~~l~~ii~~R~-------~~~~tIiTSN~~~~~l~~~~~d  160 (178)
T PF01695_consen  115 DDLGYEPLSEWEAELLFEIIDERY-------ERKPTIITSNLSPSELEEVLGD  160 (178)
T ss_dssp             ETCTSS---HHHHHCTHHHHHHHH-------HT-EEEEEESS-HHHHHT----
T ss_pred             cccceeeecccccccchhhhhHhh-------cccCeEeeCCCchhhHhhcccc
Confidence            999655  4567777888888743       3456888999999988887764

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>CHL00176 ftsH cell division protein; Validated

Probab=99.36  E-value=6.2e-12  Score=111.94  Aligned_cols=131  Identities=16%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|.+++++.+.+.+.. +..+.     +...|.+++|+||||||||++|+++|..+..        +++.+..+.+.
T Consensus       183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--------p~i~is~s~f~  253 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--------PFFSISGSEFV  253 (638)
T ss_pred             HhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CeeeccHHHHH
Confidence            4689999999988776543 22221     1234668999999999999999999998522        33333332221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hh---HHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KG---LLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~---~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+. +  ... ...+..........||+|||+|.+.           ..   .++.|+..++...     ...+.++
T Consensus       254 ~~~~g~-~--~~~-vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----~~~~ViV  324 (638)
T CHL00176        254 EMFVGV-G--AAR-VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----GNKGVIV  324 (638)
T ss_pred             HHhhhh-h--HHH-HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----CCCCeeE
Confidence            111100 0  011 1222223333445799999998773           22   2344444444311     2246778


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.+||...
T Consensus       325 IaaTN~~~  332 (638)
T CHL00176        325 IAATNRVD  332 (638)
T ss_pred             EEecCchH
Confidence            88887753

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.36  E-value=5.6e-12  Score=110.93  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ..++|+..+++.+.+.+........      +++|+|++||||+++|++|+.....   .  ..+|+.+++..+...   
T Consensus       196 ~~liG~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~lA~~ih~~s~r---~--~~pfv~i~c~~~~~~---  261 (534)
T TIGR01817       196 DGIIGKSPAMRQVVDQARVVARSNS------TVLLRGESGTGKELIAKAIHYLSPR---A--KRPFVKVNCAALSET---  261 (534)
T ss_pred             CceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCccHHHHHHHHHHhCCC---C--CCCeEEeecCCCCHH---
Confidence            3689999999999999988765432      6899999999999999999987443   2  356777776544110   


Q ss_pred             hhHHHHHHhHH----HH-------HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695         102 HVSLYRLQLTN----WI-------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS  166 (202)
Q Consensus       102 ~~~~~~~~l~~----~~-------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts  166 (202)
                      .   ....+.+    .+       .+.+.....++++|||++.++...|..|+++++++.+...    ....++.+|++|
T Consensus       262 ~---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s  338 (534)
T TIGR01817       262 L---LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT  338 (534)
T ss_pred             H---HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence            0   0000000    00       0112334458999999999999999999999998764321    112357889999


Q ss_pred             CcChHH
Q psy1695         167 NSGGTE  172 (202)
Q Consensus       167 n~~~~~  172 (202)
                      +...+.
T Consensus       339 ~~~l~~  344 (534)
T TIGR01817       339 NRDLEE  344 (534)
T ss_pred             CCCHHH
Confidence            877543

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>KOG0736|consensus

Probab=99.36  E-value=2.3e-12  Score=113.59  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=86.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      +|=|-++++..|.+.++--+.++.-    -++..+++||||||||||.+|+++|.++.-        .|+.+-..++.  
T Consensus       673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL--------~FlSVKGPELL--  742 (953)
T KOG0736|consen  673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL--------NFLSVKGPELL--  742 (953)
T ss_pred             cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee--------eEEeecCHHHH--
Confidence            4667899999999999874433321    122347999999999999999999998422        23333222221  


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh-------------HHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-------------LLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~-------------~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                       ..|+|..++ -.+.+.+..+.+...||||||+|.+-|.             +...|+.-||.-.    .+..+.+||+-
T Consensus       743 -NMYVGqSE~-NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls----~~~s~~VFViG  816 (953)
T KOG0736|consen  743 -NMYVGQSEE-NVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLS----DSSSQDVFVIG  816 (953)
T ss_pred             -HHHhcchHH-HHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhccc----CCCCCceEEEe
Confidence             122332221 1334555566666789999999998662             3344444444311    11345555555


Q ss_pred             eCcChHHHHHHHHHHHHhhhHHH
Q psy1695         166 SNSGGTEIMNTFLELRKSECIEF  188 (202)
Q Consensus       166 sn~~~~~i~~~~~~~~~~~~~r~  188 (202)
                      ++..++.+..+   +++.||.+-
T Consensus       817 ATNRPDLLDpA---LLRPGRFDK  836 (953)
T KOG0736|consen  817 ATNRPDLLDPA---LLRPGRFDK  836 (953)
T ss_pred             cCCCccccChh---hcCCCccce
Confidence            55555555444   355565543

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.34  E-value=8.7e-12  Score=106.22  Aligned_cols=138  Identities=14%  Similarity=0.158  Sum_probs=98.9

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC-
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP-   98 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   98 (202)
                      ....++|+..+++.+.+.+.+......      .++++|++||||-.+|++|.+.-.+   .  ..+|+.++++.+... 
T Consensus       139 ~~~~liG~S~am~~l~~~i~kvA~s~a------~VLI~GESGtGKElvAr~IH~~S~R---~--~~PFVavNcaAip~~l  207 (464)
T COG2204         139 LGGELVGESPAMQQLRRLIAKVAPSDA------SVLITGESGTGKELVARAIHQASPR---A--KGPFIAVNCAAIPENL  207 (464)
T ss_pred             ccCCceecCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHhhCcc---c--CCCceeeecccCCHHH
Confidence            345799999999999999988765543      6899999999999999999887433   2  467888887654221 


Q ss_pred             --------CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695          99 --------NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS  166 (202)
Q Consensus        99 --------~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts  166 (202)
                              ..+.+.   .. ...-.+.+..+..+.+|||||..||.++|..|+++|+++.+..-    .-.-++.+|.+|
T Consensus       208 ~ESELFGhekGAFT---GA-~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT  283 (464)
T COG2204         208 LESELFGHEKGAFT---GA-ITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT  283 (464)
T ss_pred             HHHHhhcccccCcC---Cc-ccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence                    111000   00 00111234455668999999999999999999999999876431    234578899999


Q ss_pred             CcChHH
Q psy1695         167 NSGGTE  172 (202)
Q Consensus       167 n~~~~~  172 (202)
                      |..-+.
T Consensus       284 ~~dL~~  289 (464)
T COG2204         284 NRDLEE  289 (464)
T ss_pred             CcCHHH
Confidence            887543

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.34  E-value=1.8e-11  Score=99.15  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhcccccC----
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFNSRIHF----   97 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~~~----   97 (202)
                      |+.+++.+..++...       +.|++++|+||  +||+.+|+.+|+.+.+..+.     |.+..+..+....+.+    
T Consensus         7 q~~~~~~L~~~~~~~-------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i   77 (290)
T PRK07276          7 QPKVFQRFQTILEQD-------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI   77 (290)
T ss_pred             HHHHHHHHHHHHHcC-------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeee
Confidence            666777766666542       25668999996  68999999999999984321     1122222222211111    


Q ss_pred             -CCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          98 -PNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        98 -~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                       +....++  .++ .+.+...+..    +++.|+|||++|+|+..+.|.|++.||+++       .+++||++|+...
T Consensus        78 ~p~~~~I~--idq-IR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-------~~t~~iL~t~~~~  145 (290)
T PRK07276         78 EPQGQVIK--TDT-IRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-------SEIYIFLLTNDEN  145 (290)
T ss_pred             cCCCCcCC--HHH-HHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-------CCeEEEEEECChh
Confidence             1111222  112 2223333333    345999999999999999999999999998       8999999997653

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.33  E-value=5.1e-12  Score=92.02  Aligned_cols=113  Identities=12%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhH
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVS  104 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (202)
                      +|+..+++.+.+.+........      +++++|++||||+++|++|+..-..   .  ...++..++....        
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~------pvli~GE~GtGK~~~A~~lh~~~~~---~--~~~~~~~~~~~~~--------   61 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSS------PVLITGEPGTGKSLLARALHRYSGR---A--NGPFIVIDCASLP--------   61 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-------EEEECCTTSSHHHHHHCCHHTTTT---C--CS-CCCCCHHCTC--------
T ss_pred             CCCCHHHHHHHHHHHHHhCCCC------cEEEEcCCCCCHHHHHHHHHhhcCc---c--CCCeEEechhhCc--------
Confidence            5888899999999998775543      6799999999999999999887322   1  2233333332210        


Q ss_pred             HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         105 LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       105 ~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                                .+.+.....+.++|+|+|.++++.|..|...++...      ..+..+|++|....+.
T Consensus        62 ----------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~------~~~~RlI~ss~~~l~~  113 (138)
T PF14532_consen   62 ----------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE------RSNVRLIASSSQDLEE  113 (138)
T ss_dssp             ----------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT------TTTSEEEEEECC-CCC
T ss_pred             ----------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC------CCCeEEEEEeCCCHHH
Confidence                      011223456789999999999999999999998742      1577888998877554

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.33  E-value=8.3e-12  Score=109.09  Aligned_cols=143  Identities=16%  Similarity=0.168  Sum_probs=92.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc---CcCccchhhhhcccccCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK---DKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~   99 (202)
                      +++|+..+++.+.+.+........      +++++|++||||+.+|++|.+.+.....   .....+|+.++++.+....
T Consensus       220 ~iiG~S~~m~~~~~~i~~~A~s~~------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l  293 (538)
T PRK15424        220 DLLGQSPQMEQVRQTILLYARSSA------AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL  293 (538)
T ss_pred             heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh
Confidence            499999999999999988765433      6899999999999999999987321000   1114577877776542210


Q ss_pred             Cc--hhHHHHH-HhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695         100 EN--HVSLYRL-QLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS  168 (202)
Q Consensus       100 ~~--~~~~~~~-~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~  168 (202)
                      ..  .++ +.+ .+.+    .-.+.+.....+.+|||||+.|+...|..|+++++++.+...    .--.++.+|.+||.
T Consensus       294 leseLFG-~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~  372 (538)
T PRK15424        294 LEAELFG-YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC  372 (538)
T ss_pred             HHHHhcC-CccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCC
Confidence            00  000 000 0000    001123344568999999999999999999999998765421    11235678999987


Q ss_pred             ChHH
Q psy1695         169 GGTE  172 (202)
Q Consensus       169 ~~~~  172 (202)
                      .-+.
T Consensus       373 ~L~~  376 (538)
T PRK15424        373 DLEE  376 (538)
T ss_pred             CHHH
Confidence            7554

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.33  E-value=6.6e-12  Score=99.62  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCc---Cccchhhhhc---ccccC--CCCchhHHHHHHhHHHHHHhhh--
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK---GTSRFVHKFN---SRIHF--PNENHVSLYRLQLTNWIISNVT--  119 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~---~~~~~~~~~~---~~~~~--~~~~~~~~~~~~l~~~~~~~l~--  119 (202)
                      .|++++|+||+|+||..+|.++|+.+.|..+.+   .+..+..+..   ++++.  +....++  .++ .+.+.+.+.  
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~-ir~l~~~l~~~   82 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KED-ALSIINKLNRP   82 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHH-HHHHHHHHccC
Confidence            677899999999999999999999999843221   1222222221   22221  1112222  111 222333222  


Q ss_pred             ---hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         120 ---ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       120 ---~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                         .+++.|+|||++|+|+..+.|.|++.+|+++       .+++||++|+....
T Consensus        83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-------~~t~fiLit~~~~~  130 (261)
T PRK05818         83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-------KNTYGIFTTRNENN  130 (261)
T ss_pred             chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-------CCeEEEEEECChHh
Confidence               2346999999999999999999999999999       99999999986543

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=7e-12  Score=109.37  Aligned_cols=132  Identities=16%  Similarity=0.205  Sum_probs=80.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++.|.+.+++.+.+++...+..+.     ..+.|.++||+||||||||++|+++|..+.        .+|+.+..+.+..
T Consensus       243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--------~~fi~v~~~~l~s  314 (494)
T COG0464         243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--------SRFISVKGSELLS  314 (494)
T ss_pred             hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--------CeEEEeeCHHHhc
Confidence            355667778887777766433322     123556899999999999999999999742        3555555544433


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ..-+..   ... ...+..........||||||+|.+-+           .+.+.|+..++.-.     ...++++|.+|
T Consensus       315 k~vGes---ek~-ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----~~~~v~vi~aT  385 (494)
T COG0464         315 KWVGES---EKN-IRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----KAEGVLVIAAT  385 (494)
T ss_pred             cccchH---HHH-HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----ccCceEEEecC
Confidence            222221   111 23333333444458999999987733           35666666665322     23566777777


Q ss_pred             CcChH
Q psy1695         167 NSGGT  171 (202)
Q Consensus       167 n~~~~  171 (202)
                      |....
T Consensus       386 N~p~~  390 (494)
T COG0464         386 NRPDD  390 (494)
T ss_pred             CCccc
Confidence            77543

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.31  E-value=2.3e-11  Score=109.70  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=65.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +++||+..+.. ...+.+.+...    +..+++|+||||||||++|+++++.+..        .++.++...     . .
T Consensus        29 d~vGQe~ii~~-~~~L~~~i~~~----~~~slLL~GPpGtGKTTLA~aIA~~~~~--------~f~~lna~~-----~-~   89 (725)
T PRK13341         29 EFVGQDHILGE-GRLLRRAIKAD----RVGSLILYGPPGVGKTTLARIIANHTRA--------HFSSLNAVL-----A-G   89 (725)
T ss_pred             HhcCcHHHhhh-hHHHHHHHhcC----CCceEEEECCCCCCHHHHHHHHHHHhcC--------cceeehhhh-----h-h
Confidence            58999988753 22333333322    2236899999999999999999988533        222222211     0 0


Q ss_pred             hHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         103 VSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      +....+. .......+.. ....++||||++.++...++.|++.++++
T Consensus        90 i~dir~~-i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g  136 (725)
T PRK13341         90 VKDLRAE-VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENG  136 (725)
T ss_pred             hHHHHHH-HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCc
Confidence            1101111 1111111111 23579999999999999999999999874

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.31  E-value=7.7e-12  Score=112.23  Aligned_cols=134  Identities=7%  Similarity=0.081  Sum_probs=91.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      +.++|++.++..+.+.+........      +++|+|++||||+++|++|.+....   .  ..+|+.+++..+...   
T Consensus       325 ~~l~g~s~~~~~~~~~~~~~a~~~~------pvli~Ge~GtGK~~~A~~ih~~s~r---~--~~pfv~vnc~~~~~~---  390 (638)
T PRK11388        325 DHMPQDSPQMRRLIHFGRQAAKSSF------PVLLCGEEGVGKALLAQAIHNESER---A--AGPYIAVNCQLYPDE---  390 (638)
T ss_pred             cceEECCHHHHHHHHHHHHHhCcCC------CEEEECCCCcCHHHHHHHHHHhCCc---c--CCCeEEEECCCCChH---
Confidence            3588999999999888888765433      5899999999999999999887433   1  356777776544210   


Q ss_pred             hhHHHHHHhHH--------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccc----cCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTN--------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI----SFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~--------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~----~~~~~~~Iltsn~~  169 (202)
                      .   ....+.+        ...+.+.....+++||||++.|+...|..|+++++++.++..-    ...++.+|++||..
T Consensus       391 ~---~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~  467 (638)
T PRK11388        391 A---LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD  467 (638)
T ss_pred             H---HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence            0   0000000        0001233344688999999999999999999999987654211    11256789998877


Q ss_pred             hHH
Q psy1695         170 GTE  172 (202)
Q Consensus       170 ~~~  172 (202)
                      ...
T Consensus       468 l~~  470 (638)
T PRK11388        468 LAM  470 (638)
T ss_pred             HHH
Confidence            543

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.31  E-value=8.4e-12  Score=99.03  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  105 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (202)
                      +|..|+..+.+.+..+..      ...+++|+|++|||||+++.++++++..   .+...-++.  ...+.....   ..
T Consensus        80 ~q~~al~~a~~~~~~~~~------~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it--~~~l~~~l~---~~  145 (244)
T PRK07952         80 GQMNALSKARQYVEEFDG------NIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT--VADIMSAMK---DT  145 (244)
T ss_pred             hHHHHHHHHHHHHHhhcc------CCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE--HHHHHHHHH---HH
Confidence            344555555555444321      1126899999999999999999999866   332221221  111100000   00


Q ss_pred             HH--HHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         106 YR--LQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       106 ~~--~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                      +.  ..-...+...+.  ..+++||||++....  ...+.|.++++...      ..+..+|+|||+..+.+.+.+.+
T Consensus       146 ~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry------~~~~~tiitSNl~~~~l~~~~g~  215 (244)
T PRK07952        146 FSNSETSEEQLLNDLS--NVDLLVIDEIGVQTESRYEKVIINQIVDRRS------SSKRPTGMLTNSNMEEMTKLLGE  215 (244)
T ss_pred             HhhccccHHHHHHHhc--cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH------hCCCCEEEeCCCCHHHHHHHhCh
Confidence            00  000112222233  357999999977654  34567888888632      14678899999999988776654

>PRK08939 primosomal protein DnaI; Reviewed

Probab=99.30  E-value=3.7e-11  Score=98.49  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  129 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD  129 (202)
                      .+++|+||+|||||+++.++|+.+..   .+....+++..  +..+...       +...-.......+.  ..+|+|||
T Consensus       157 ~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~~l~~~lk~~-------~~~~~~~~~l~~l~--~~dlLiID  224 (306)
T PRK08939        157 KGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFPEFIRELKNS-------ISDGSVKEKIDAVK--EAPVLMLD  224 (306)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHHHHHHHHHHH-------HhcCcHHHHHHHhc--CCCEEEEe
Confidence            47999999999999999999999876   44333333221  1111000       00000011122222  34799999


Q ss_pred             cCCC--CChhHHHHHHH-hcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         130 EVDK--FPKGLLDVIIP-FIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       130 Eid~--~~~~~~~~L~~-~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                      |+..  +++...+.++. +++.. +     .++..+|+|||...+.+.+.+
T Consensus       225 DiG~e~~s~~~~~~ll~~Il~~R-~-----~~~~~ti~TSNl~~~el~~~~  269 (306)
T PRK08939        225 DIGAEQMSSWVRDEVLGVILQYR-M-----QEELPTFFTSNFDFDELEHHL  269 (306)
T ss_pred             cCCCccccHHHHHHHHHHHHHHH-H-----HCCCeEEEECCCCHHHHHHHH
Confidence            9954  45556655554 44542 1     156788999999999988765

>PRK08181 transposase; Validated

Probab=99.30  E-value=8.6e-12  Score=100.32  Aligned_cols=124  Identities=15%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      +++|+||+|||||++|.+++..+..   .+....|+..  ..+.....   ....+.-.......+.  ..+++||||++
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~--~~L~~~l~---~a~~~~~~~~~l~~l~--~~dLLIIDDlg  177 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT--TDLVQKLQ---VARRELQLESAIAKLD--KFDLLILDDLA  177 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH--HHHHHHHH---HHHhCCcHHHHHHHHh--cCCEEEEeccc
Confidence            6999999999999999999998765   3322222211  11100000   0000000011111222  34799999998


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHH--HhhhHHHHhccc
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELR--KSECIEFIFQCQ  193 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~--~~~~~r~~~~~~  193 (202)
                      ..+.  ..++.|+++++...       .+..+|+|||...+.+.+.+.+..  .+-.+|+..++.
T Consensus       178 ~~~~~~~~~~~Lf~lin~R~-------~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~  235 (269)
T PRK08181        178 YVTKDQAETSVLFELISARY-------ERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHAT  235 (269)
T ss_pred             cccCCHHHHHHHHHHHHHHH-------hCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCce
Confidence            7755  45678999998643       345789999999988877654322  222345544443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.30  E-value=1.9e-11  Score=88.28  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  105 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (202)
                      |++..+..+...+...        .+.+++++||+|+|||++++.+++.+..   .+  ..++.+.......   ...  
T Consensus         2 ~~~~~~~~i~~~~~~~--------~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~--~~v~~~~~~~~~~---~~~--   63 (151)
T cd00009           2 GQEEAIEALREALELP--------PPKNLLLYGPPGTGKTTLARAIANELFR---PG--APFLYLNASDLLE---GLV--   63 (151)
T ss_pred             chHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHhhc---CC--CCeEEEehhhhhh---hhH--
Confidence            5565666655554321        2236899999999999999999998743   11  1122221111100   000  


Q ss_pred             HHHHhH----HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         106 YRLQLT----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       106 ~~~~l~----~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      ......    .............++++||++.+++.....+.+.++...... ....+..+|+++|....
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~~~  132 (151)
T cd00009          64 VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-IDRENVRVIGATNRPLL  132 (151)
T ss_pred             HHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCcccc
Confidence            000000    111111223345899999999998877788888877743110 12367888898887653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0727|consensus

Probab=99.30  E-value=7.1e-12  Score=98.26  Aligned_cols=134  Identities=15%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|-+..++.+.+++.--+.+.     -+.+.|.+++++||||||||.+|+++|+...        ..|+++..+.+..
T Consensus       156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--------a~firvvgsefvq  227 (408)
T KOG0727|consen  156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--------AAFIRVVGSEFVQ  227 (408)
T ss_pred             ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--------hheeeeccHHHHH
Confidence            35566666777777765421110     0134577899999999999999999998742        2455544433311


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt  165 (202)
                      ..   .+ ....+...+......+...++||||+|..           +.++|..|+.++..   +++. ...|+-+|+.
T Consensus       228 ky---lg-egprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnq---mdgfdq~~nvkvima  300 (408)
T KOG0727|consen  228 KY---LG-EGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ---MDGFDQTTNVKVIMA  300 (408)
T ss_pred             HH---hc-cCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh---ccCcCcccceEEEEe
Confidence            11   11 00112333334444555689999999654           33678888887765   2333 3468889999


Q ss_pred             eCcChH
Q psy1695         166 SNSGGT  171 (202)
Q Consensus       166 sn~~~~  171 (202)
                      ||....
T Consensus       301 tnradt  306 (408)
T KOG0727|consen  301 TNRADT  306 (408)
T ss_pred             cCcccc
Confidence            998653

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.30  E-value=6.1e-12  Score=107.40  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+..++.+.+++...+..+.     +...|.+++|+||||||||++|+++|+.+..        .++.+..+.+.
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--------~fi~V~~seL~  254 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--------TFLRVVGSELI  254 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--------CEEEEecchhh
Confidence            4688999999999998875433211     1235568999999999999999999998533        33433333221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLF  164 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Il  164 (202)
                      ..   +.+ ........+..........|++|||+|.+.           ..++..++.++..-   ++. ...++.+|+
T Consensus       255 ~k---~~G-e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---dg~~~~~~V~VI~  327 (438)
T PTZ00361        255 QK---YLG-DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---DGFDSRGDVKVIM  327 (438)
T ss_pred             hh---hcc-hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---hhhcccCCeEEEE
Confidence            11   111 111112223333333445799999997652           12344455554321   111 125778899


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      +||...
T Consensus       328 ATNr~d  333 (438)
T PTZ00361        328 ATNRIE  333 (438)
T ss_pred             ecCChH
Confidence            998643

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.30  E-value=1.6e-11  Score=107.27  Aligned_cols=138  Identities=15%  Similarity=0.151  Sum_probs=91.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC--
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE--  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  100 (202)
                      +++|+..+++.+.+.+........      ++++.|++||||+.+|++|.+.-..   .  ..+|+.+++..+.....  
T Consensus       213 ~iiG~S~~m~~~~~~i~~~A~~~~------pVLI~GE~GTGKe~lA~~IH~~S~r---~--~~pfv~inC~~l~e~lles  281 (526)
T TIGR02329       213 DLLGASAPMEQVRALVRLYARSDA------TVLILGESGTGKELVAQAIHQLSGR---R--DFPFVAINCGAIAESLLEA  281 (526)
T ss_pred             heeeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCcCHHHHHHHHHHhcCc---C--CCCEEEeccccCChhHHHH
Confidence            499999999999999988765433      6899999999999999999876322   1  45777777665421100  


Q ss_pred             chhHHHHH-HhH----HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChH
Q psy1695         101 NHVSLYRL-QLT----NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       101 ~~~~~~~~-~l~----~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~  171 (202)
                      ..++ +.+ .+.    ..-.+.+.....+.+||||++.++...|..|+++|+++.+...    ....++.+|++||....
T Consensus       282 eLFG-~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~  360 (526)
T TIGR02329       282 ELFG-YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALT  360 (526)
T ss_pred             HhcC-CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHH
Confidence            0000 000 000    0001123334457899999999999999999999998765421    11234578898887754


Q ss_pred             H
Q psy1695         172 E  172 (202)
Q Consensus       172 ~  172 (202)
                      .
T Consensus       361 ~  361 (526)
T TIGR02329       361 T  361 (526)
T ss_pred             H
Confidence            3

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>KOG0745|consensus

Probab=99.30  E-value=1.3e-11  Score=102.86  Aligned_cols=145  Identities=23%  Similarity=0.301  Sum_probs=92.2

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHh---c--------------c-----------------CC-----------
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQ---N--------------R-----------------YH-----------   47 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~---~--------------~-----------------~~-----------   47 (202)
                      ..++-+.|++.|+||+.|++.+.-++.++..   +              .                 .+           
T Consensus       136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~l  215 (564)
T KOG0745|consen  136 PKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKAL  215 (564)
T ss_pred             hHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccc
Confidence            5788899999999999999988777755310   0              0                 00           


Q ss_pred             C----CCce---EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHH-HHH---
Q psy1695          48 N----TKAL---AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW-IIS---  116 (202)
Q Consensus        48 ~----~~pl---~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~---  116 (202)
                      +    +.-+   .+|+.||+|+|||.+|+.||+.+.-        +|.-.++..+.  ..+|++.-.+.+... +.+   
T Consensus       216 d~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldV--------PfaIcDcTtLT--QAGYVGeDVEsvi~KLl~~A~~  285 (564)
T KOG0745|consen  216 DEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDV--------PFAICDCTTLT--QAGYVGEDVESVIQKLLQEAEY  285 (564)
T ss_pred             cccccceeeecccEEEECCCCCchhHHHHHHHHHhCC--------CeEEecccchh--hcccccccHHHHHHHHHHHccC
Confidence            0    0111   4899999999999999999999743        44444444332  235555222211111 111   


Q ss_pred             hhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccc--------------cccCCceEEEEeeC
Q psy1695         117 NVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYN--------------QISFQNTIFLFLSN  167 (202)
Q Consensus       117 ~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~--------------~~~~~~~~~Iltsn  167 (202)
                      .+..+..+||+|||+||+..              .+|..|++++|-..+..              .+|..+..||..-.
T Consensus       286 nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA  364 (564)
T KOG0745|consen  286 NVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA  364 (564)
T ss_pred             CHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEeccc
Confidence            13344559999999999862              58999999998543221              13677777766543

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.1e-11  Score=108.14  Aligned_cols=161  Identities=18%  Similarity=0.183  Sum_probs=93.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      .++.|.++|++.+.+.+.-. .+|.     +.+.|.+++++||||||||.+|+++|-+..-+--.-..++|++.+..   
T Consensus       150 ~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG---  225 (596)
T COG0465         150 ADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG---  225 (596)
T ss_pred             hhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC---
Confidence            46899999999997777542 2222     13578899999999999999999999884221000012334433321   


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                       .....+       .....++-+..| +|++|||+|....              ...|.|+.-||..      ..+..++
T Consensus       226 -vGAsRV-------RdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF------~~~~gvi  290 (596)
T COG0465         226 -VGASRV-------RDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF------GGNEGVI  290 (596)
T ss_pred             -CCcHHH-------HHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC------CCCCceE
Confidence             000011       222223333344 7999999977643              2456666555542      2233344


Q ss_pred             EEeeCcChHHHHHHHHH------HHHhhhHHHHhccchhHHHhhc
Q psy1695         163 LFLSNSGGTEIMNTFLE------LRKSECIEFIFQCQPLKVYLKK  201 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~------~~~~~~~r~~~~~~~~~~~~~~  201 (202)
                      |++....++.+..++++      ...-..+++..+.+.|++++|+
T Consensus       291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~  335 (596)
T COG0465         291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN  335 (596)
T ss_pred             EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence            44444444444444432      2223345777788889999886

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.29  E-value=1.9e-11  Score=112.37  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=79.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~   99 (202)
                      +.++||+..++.+...+.+...+        +.+|+||||||||++++.+|+.+.... +.. ....++..+++.+. ..
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~~~--------n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-ag  257 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRRQN--------NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-AG  257 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCCcC--------ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-cc
Confidence            35899999887777766543211        568999999999999999999975410 000 01122222232221 11


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ..+.+.+.+.+...+.+........|+||||++.+..        ++.+.|.+.+++|         ...+|.+|+..
T Consensus       258 ~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G---------~l~~IgaTT~~  326 (852)
T TIGR03345       258 ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG---------ELRTIAATTWA  326 (852)
T ss_pred             cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC---------CeEEEEecCHH
Confidence            2334445454454444433333458999999988853        3445788888884         56777877653

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.28  E-value=2e-11  Score=101.09  Aligned_cols=134  Identities=12%  Similarity=0.095  Sum_probs=91.4

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~  100 (202)
                      .+.++|...++..+.+.+.+....+.      +++++|++||||+++|+++......   .  ..+|+.+++..+...  
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~a~~~~------pVlI~GE~GtGK~~lA~~iH~~s~r---~--~~pfv~v~c~~~~~~--   71 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRLAPLDK------PVLIIGERGTGKELIASRLHYLSSR---W--QGPFISLNCAALNEN--   71 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHHhCCCC------CEEEECCCCCcHHHHHHHHHHhCCc---c--CCCeEEEeCCCCCHH--
Confidence            35699999999999999998865432      6899999999999999999876322   1  356777776543210  


Q ss_pred             chhHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEe
Q psy1695         101 NHVSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFL  165 (202)
Q Consensus       101 ~~~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Ilt  165 (202)
                       .   ....+.+           ...+.+.....+.++|||++.++...|..|+.+++++.+.. +   .-..++.+|++
T Consensus        72 -~---~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~  147 (326)
T PRK11608         72 -L---LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCA  147 (326)
T ss_pred             -H---HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEe
Confidence             0   0000000           00112334456889999999999999999999999876432 1   11235788898


Q ss_pred             eCcChH
Q psy1695         166 SNSGGT  171 (202)
Q Consensus       166 sn~~~~  171 (202)
                      |+....
T Consensus       148 s~~~l~  153 (326)
T PRK11608        148 TNADLP  153 (326)
T ss_pred             CchhHH
Confidence            887644

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.28  E-value=2.2e-11  Score=106.56  Aligned_cols=132  Identities=13%  Similarity=0.120  Sum_probs=91.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|+..+++.+.+.+......+.      +++++|++||||+++|++|......   .  ..+++.+++..+...   .
T Consensus       188 ~iig~s~~~~~~~~~i~~~a~~~~------pVlI~Ge~GtGK~~~A~~ih~~s~r---~--~~p~v~v~c~~~~~~---~  253 (509)
T PRK05022        188 EMIGQSPAMQQLKKEIEVVAASDL------NVLILGETGVGKELVARAIHAASPR---A--DKPLVYLNCAALPES---L  253 (509)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHhCCc---C--CCCeEEEEcccCChH---H
Confidence            599999999999999998765433      6899999999999999999987432   1  346777766544211   0


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn  167 (202)
                         ....+.+           .-.+.+.....+.+||||++.++...|..|+++++++.+.. +   ....++.+|++||
T Consensus       254 ---~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~  330 (509)
T PRK05022        254 ---AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN  330 (509)
T ss_pred             ---HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence               0000000           00012333445789999999999999999999999876432 1   1234678999998


Q ss_pred             cChH
Q psy1695         168 SGGT  171 (202)
Q Consensus       168 ~~~~  171 (202)
                      ...+
T Consensus       331 ~~l~  334 (509)
T PRK05022        331 RDLR  334 (509)
T ss_pred             CCHH
Confidence            7754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.27  E-value=3.6e-12  Score=92.70  Aligned_cols=104  Identities=15%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccc------ccCCC---CchhHHHHHHhHHHHHHhhhhCCc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSR------IHFPN---ENHVSLYRLQLTNWIISNVTACDR  123 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~l~~~~~  123 (202)
                      +++|+||||||||++|+.+|+.+..        ++..+.+..      +.+..   .+... +.   .+.+...+.  ..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~--------~~~~i~~~~~~~~~dl~g~~~~~~~~~~-~~---~~~l~~a~~--~~   66 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR--------PVIRINCSSDTTEEDLIGSYDPSNGQFE-FK---DGPLVRAMR--KG   66 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC--------EEEEEE-TTTSTHHHHHCEEET-TTTTC-EE---E-CCCTTHH--EE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc--------ceEEEEeccccccccceeeeeecccccc-cc---ccccccccc--ce
Confidence            4799999999999999999999733        111111100      00000   00000 00   000000111  34


Q ss_pred             eEEEEecCCCCChhHHHHHHHhcccCccc--cc---ccCC-------ceEEEEeeCcCh
Q psy1695         124 AIFIFDEVDKFPKGLLDVIIPFIDHHAVY--NQ---ISFQ-------NTIFLFLSNSGG  170 (202)
Q Consensus       124 ~viiiDEid~~~~~~~~~L~~~le~~~~~--~~---~~~~-------~~~~Iltsn~~~  170 (202)
                      .+++|||++++++++++.|+++++++.+.  ..   ....       +..+|+|+|...
T Consensus        67 ~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~  125 (139)
T PF07728_consen   67 GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD  125 (139)
T ss_dssp             EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred             eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence            79999999999999999999999988654  11   1111       478999999877

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK06526 transposase; Provisional

Probab=99.27  E-value=3.2e-11  Score=96.41  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  130 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE  130 (202)
                      .++|+||||||||++|.+++..+..   .+....|....  +..+.....  .+    .+...+. .+  ...+++||||
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t~~~l~~~l~~~~~--~~----~~~~~l~-~l--~~~dlLIIDD  167 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFATAAQWVARLAAAHH--AG----RLQAELV-KL--GRYPLLIVDE  167 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhhHHHHHHHHHHHHh--cC----cHHHHHH-Hh--ccCCEEEEcc
Confidence            6899999999999999999998765   33222221110  000000000  00    0011111 11  2358999999


Q ss_pred             CCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         131 VDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       131 id~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                      ++..+  +..++.|.++++...       .+..+|+|||...+.+.+.+.+
T Consensus       168 ~g~~~~~~~~~~~L~~li~~r~-------~~~s~IitSn~~~~~w~~~~~d  211 (254)
T PRK06526        168 VGYIPFEPEAANLFFQLVSSRY-------ERASLIVTSNKPFGRWGEVFGD  211 (254)
T ss_pred             cccCCCCHHHHHHHHHHHHHHH-------hcCCEEEEcCCCHHHHHHHcCC
Confidence            99875  567788999887633       4456899999998887766544

>PRK06893 DNA replication initiation factor; Validated

Probab=99.27  E-value=2.5e-11  Score=95.79  Aligned_cols=99  Identities=10%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+|||||||||+++++++++..   .+....|+.....       ..   .    ...+.+.+.  ..++++|||++
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~-------~~---~----~~~~~~~~~--~~dlLilDDi~  101 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKS-------QY---F----SPAVLENLE--QQDLVCLDDLQ  101 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHh-------hh---h----hHHHHhhcc--cCCEEEEeChh
Confidence            4799999999999999999999765   3222222222100       00   0    111112222  34799999999


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      ....  ..+..|+.+++...     +....++|+|+|..++.+..
T Consensus       102 ~~~~~~~~~~~l~~l~n~~~-----~~~~~illits~~~p~~l~~  141 (229)
T PRK06893        102 AVIGNEEWELAIFDLFNRIK-----EQGKTLLLISADCSPHALSI  141 (229)
T ss_pred             hhcCChHHHHHHHHHHHHHH-----HcCCcEEEEeCCCChHHccc
Confidence            8753  34456777666432     11345667889988876653

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.26  E-value=2.5e-11  Score=110.32  Aligned_cols=128  Identities=13%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~   99 (202)
                      +.++||+..++.+.+.+.+..        ..+++|+||||||||++++.+|+.+.... +... ...++.++++.+... 
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~-  252 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRK--------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG-  252 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh-
Confidence            469999999988776665432        22578999999999999999999974410 0000 112233332222110 


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC---------hhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~---------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      ..+.+.+.+.+...+. .+......|+||||++.+.         .++++.|.+.|++|         +..+|.+||.
T Consensus       253 ~~~~g~~e~~l~~i~~-~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---------~i~~IgaTt~  320 (731)
T TIGR02639       253 TKYRGDFEERLKAVVS-EIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---------KLRCIGSTTY  320 (731)
T ss_pred             ccccchHHHHHHHHHH-HHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---------CeEEEEecCH
Confidence            1222334333333333 2333445799999998774         34678898888874         5677888775

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.26  E-value=1.5e-11  Score=101.99  Aligned_cols=138  Identities=15%  Similarity=0.129  Sum_probs=78.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh---------hhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV---------HKFN   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~---------~~~~   92 (202)
                      ..++||++++..+..++..-        +.-+++|.||+|||||++|+++++.+.+..--. ..+|.         ...+
T Consensus        17 ~~ivGq~~~k~al~~~~~~p--------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~-~~pf~~~p~~p~~~~~~~   87 (350)
T CHL00081         17 TAIVGQEEMKLALILNVIDP--------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK-DDPFNSHPSDPELMSDEV   87 (350)
T ss_pred             HHHhChHHHHHHHHHhccCC--------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC-CCCCCCCCCChhhhchhh
Confidence            35999999888877655531        122689999999999999999999976521000 00111         0000


Q ss_pred             c-------------------cccC--CCCchhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHHHH
Q psy1695          93 S-------------------RIHF--PNENHVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDVII  143 (202)
Q Consensus        93 ~-------------------~~~~--~~~~~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~L~  143 (202)
                      .                   .+..  .....+|..  ++...+        .+.+..+..+++++||++++++..|+.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL  165 (350)
T CHL00081         88 REAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL  165 (350)
T ss_pred             hhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence            0                   0000  000001100  001111        11233444589999999999999999999


Q ss_pred             HhcccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695         144 PFIDHHAVY---NQI---SFQNTIFLFLSNSGG  170 (202)
Q Consensus       144 ~~le~~~~~---~~~---~~~~~~~Iltsn~~~  170 (202)
                      +.|+++..+   .+.   --...++|.|.|...
T Consensus       166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~e  198 (350)
T CHL00081        166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEE  198 (350)
T ss_pred             HHHHhCCeEEeeCCeeeecCCCEEEEeccCccc
Confidence            999986432   222   113455566666553

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=99.26  E-value=2.1e-11  Score=97.46  Aligned_cols=110  Identities=18%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  128 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii  128 (202)
                      +-+++|+||||||||++|.+|++.+..   .|...-|+...  +..+......  +    .....+...+  +..+|+||
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~~el~~~Lk~~~~~--~----~~~~~l~~~l--~~~dlLIi  173 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITAPDLLSKLKAAFDE--G----RLEEKLLREL--KKVDLLII  173 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhc--C----chHHHHHHHh--hcCCEEEE
Confidence            337999999999999999999999875   44333333221  1111000000  0    0011122212  33589999


Q ss_pred             ecCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         129 DEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       129 DEid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      ||+...+  ....+.+.+++.....      +... |+|||...+.+.+.+.
T Consensus       174 DDlG~~~~~~~~~~~~~q~I~~r~~------~~~~-~~tsN~~~~~~~~~~~  218 (254)
T COG1484         174 DDIGYEPFSQEEADLLFQLISRRYE------SRSL-IITSNLSFGEWDELFG  218 (254)
T ss_pred             ecccCccCCHHHHHHHHHHHHHHHh------hccc-eeecCCChHHHHhhcc
Confidence            9997754  4567788887776431      2333 9999999888766654

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.26  E-value=1e-11  Score=106.33  Aligned_cols=136  Identities=13%  Similarity=0.150  Sum_probs=97.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--   99 (202)
                      ++++|...++..+.+.+++....+.      .+|+.|++||||..+|++|.+.-.+   .  ..+|+.++++.+....  
T Consensus       245 ~~Iig~S~~m~~~~~~akr~A~tds------tVLi~GESGTGKElfA~~IH~~S~R---~--~~PFIaiNCaAiPe~LlE  313 (560)
T COG3829         245 DDIIGESPAMLRVLELAKRIAKTDS------TVLILGESGTGKELFARAIHNLSPR---A--NGPFIAINCAAIPETLLE  313 (560)
T ss_pred             hhhccCCHHHHHHHHHHHhhcCCCC------cEEEecCCCccHHHHHHHHHhcCcc---c--CCCeEEEecccCCHHHHH
Confidence            3699999999999888888765543      7999999999999999999887333   2  5688888886553221  


Q ss_pred             CchhHHHHHHhHHHHHHhhh--------hCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695         100 ENHVSLYRLQLTNWIISNVT--------ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN  167 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~--------~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn  167 (202)
                      ...+| |.   .++++++..        .+..+.+|+|||..||...|..|+++|++..+.. |   .-..++.+|.+||
T Consensus       314 SELFG-ye---~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN  389 (560)
T COG3829         314 SELFG-YE---KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN  389 (560)
T ss_pred             HHHhC-cC---CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccC
Confidence            01111 21   122223322        2334789999999999999999999999987643 1   2445778999999


Q ss_pred             cChHH
Q psy1695         168 SGGTE  172 (202)
Q Consensus       168 ~~~~~  172 (202)
                      .....
T Consensus       390 ~nL~~  394 (560)
T COG3829         390 RNLEK  394 (560)
T ss_pred             cCHHH
Confidence            87654

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.25  E-value=1.9e-11  Score=101.05  Aligned_cols=140  Identities=12%  Similarity=0.112  Sum_probs=77.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCccchhhhh----c-----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKF----N-----   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~----~-----   92 (202)
                      .++||+.+++.+.-++..  .+      ..+++|.|+||||||++|++++..+.+-.. .+..-.+....    .     
T Consensus         9 ~i~Gq~~~~~~l~~~~~~--~~------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~   80 (334)
T PRK13407          9 AIVGQEEMKQAMVLTAID--PG------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSS   80 (334)
T ss_pred             HhCCHHHHHHHHHHHHhc--cC------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccC
Confidence            589999999887654321  11      116999999999999999999999743100 01000000000    0     


Q ss_pred             cc----------ccC--CCCchhHH--HHHHhH-H---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc--
Q psy1695          93 SR----------IHF--PNENHVSL--YRLQLT-N---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY--  152 (202)
Q Consensus        93 ~~----------~~~--~~~~~~~~--~~~~l~-~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~--  152 (202)
                      ..          ++.  +....+|.  +...+. +   .-.+.+..+..+++++||++++++..++.|++.|+++.++  
T Consensus        81 ~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~  160 (334)
T PRK13407         81 TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVE  160 (334)
T ss_pred             CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEE
Confidence            00          000  00111220  111000 0   0011222333479999999999999999999999988632  


Q ss_pred             -ccc---cCCceEEEEeeCcCh
Q psy1695         153 -NQI---SFQNTIFLFLSNSGG  170 (202)
Q Consensus       153 -~~~---~~~~~~~Iltsn~~~  170 (202)
                       .+.   --...++|.|+|...
T Consensus       161 r~G~~~~~p~rfiviAt~NP~e  182 (334)
T PRK13407        161 REGLSIRHPARFVLVGSGNPEE  182 (334)
T ss_pred             ECCeEEecCCCEEEEecCCccc
Confidence             222   113455666667643

>PRK06835 DNA replication protein DnaC; Validated

Probab=99.25  E-value=3.9e-11  Score=99.19  Aligned_cols=111  Identities=11%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch-hHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH-VSLYRLQLTNWIISNVTACDRAIFIFDEV  131 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~viiiDEi  131 (202)
                      +++|+||+|||||+||.++|+.+..   .+....|+..  ..+....... .....+  .....+.+..  .+++||||+
T Consensus       185 ~Lll~G~~GtGKThLa~aIa~~l~~---~g~~V~y~t~--~~l~~~l~~~~~~~~~~--~~~~~~~l~~--~DLLIIDDl  255 (329)
T PRK06835        185 NLLFYGNTGTGKTFLSNCIAKELLD---RGKSVIYRTA--DELIEILREIRFNNDKE--LEEVYDLLIN--CDLLIIDDL  255 (329)
T ss_pred             cEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEEH--HHHHHHHHHHHhccchh--HHHHHHHhcc--CCEEEEecc
Confidence            6999999999999999999999876   4322222211  1110000000 000000  0001122332  479999999


Q ss_pred             CC--CChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         132 DK--FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       132 d~--~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      ..  .++..++.|+.+++....      .+..+|+|||...+.+.+.+.
T Consensus       256 G~e~~t~~~~~~Lf~iin~R~~------~~k~tIiTSNl~~~el~~~~~  298 (329)
T PRK06835        256 GTEKITEFSKSELFNLINKRLL------RQKKMIISTNLSLEELLKTYS  298 (329)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHHHHHh
Confidence            54  456778889998887421      346789999999988876543

>KOG0744|consensus

Probab=99.24  E-value=9.2e-12  Score=100.44  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=69.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC-ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCc-eEEEEec
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR-AIFIFDE  130 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~viiiDE  130 (202)
                      .++++||||||||++++++|+.|.-+....+ ....++++...+...+-+..+.....+.+.+.+.+..... -.++|||
T Consensus       179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDE  258 (423)
T KOG0744|consen  179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDE  258 (423)
T ss_pred             EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHH
Confidence            4899999999999999999999865321111 2223333333322222222222333445556665555433 4456899


Q ss_pred             CCCCCh---------------hHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         131 VDKFPK---------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       131 id~~~~---------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                      ++.+..               .+.|.|+.-||+-.     .+.|+++..|||+....
T Consensus       259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----~~~NvliL~TSNl~~si  310 (423)
T KOG0744|consen  259 VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----RYPNVLILATSNLTDSI  310 (423)
T ss_pred             HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----cCCCEEEEeccchHHHH
Confidence            976522               36788888777643     45788888888887653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.24  E-value=3.9e-11  Score=110.47  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~   99 (202)
                      +.++||+..++.+.+.+.+...+        .++|+||||||||++++.+|..+.... +... ...++..+++.+.. .
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~~--------n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-g  248 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-G  248 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCcC--------ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh-c
Confidence            35999999888887777664321        468999999999999999999975410 0000 11222222222211 1


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ..+.+.+.+.+...+.+........|+||||++.+..        ++++.|.+.+++|         ...+|.+|+..+
T Consensus       249 ~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g---------~l~~IgaTt~~e  318 (857)
T PRK10865        249 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------ELHCVGATTLDE  318 (857)
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC---------CCeEEEcCCCHH
Confidence            1222333333333333322223457999999988853        3688898888874         566777777654

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.24  E-value=1.1e-10  Score=102.41  Aligned_cols=136  Identities=8%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP----   98 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----   98 (202)
                      .++|...++..+.+.+++......      +++++|++||||+++|+++......   .  ..+|+.++++.+...    
T Consensus       205 ~~ig~s~~~~~~~~~~~~~A~~~~------pvlI~GE~GtGK~~lA~aiH~~s~r---~--~~pfv~inca~~~~~~~e~  273 (520)
T PRK10820        205 QIVAVSPKMRQVVEQARKLAMLDA------PLLITGDTGTGKDLLAYACHLRSPR---G--KKPFLALNCASIPDDVVES  273 (520)
T ss_pred             ceeECCHHHHHHHHHHHHHhCCCC------CEEEECCCCccHHHHHHHHHHhCCC---C--CCCeEEeccccCCHHHHHH
Confidence            699999999999988887655433      5899999999999999999776332   1  346676666544210    


Q ss_pred             -----CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695          99 -----NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  169 (202)
Q Consensus        99 -----~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~  169 (202)
                           .++......+    .-.+.+..+..+.++|||++.+++..|..|+++++++.+...    ....++.+|++|+..
T Consensus       274 elFG~~~~~~~~~~~----~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~  349 (520)
T PRK10820        274 ELFGHAPGAYPNALE----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN  349 (520)
T ss_pred             HhcCCCCCCcCCccc----CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence                 0000000000    001123334457899999999999999999999998754321    123466788888776


Q ss_pred             hHHH
Q psy1695         170 GTEI  173 (202)
Q Consensus       170 ~~~i  173 (202)
                      ...+
T Consensus       350 l~~l  353 (520)
T PRK10820        350 LVEL  353 (520)
T ss_pred             HHHH
Confidence            5443

>PRK08727 hypothetical protein; Validated

Probab=99.24  E-value=6.9e-11  Score=93.49  Aligned_cols=131  Identities=11%  Similarity=0.157  Sum_probs=75.7

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      +...+.|...+...+.....    +.    ....++|+||+||||||++++++..+..   .+....|+..  ..     
T Consensus        18 f~~f~~~~~n~~~~~~~~~~----~~----~~~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~--~~-----   79 (233)
T PRK08727         18 FDSYIAAPDGLLAQLQALAA----GQ----SSDWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPL--QA-----   79 (233)
T ss_pred             hhhccCCcHHHHHHHHHHHh----cc----CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeH--HH-----
Confidence            44457777766555433222    11    1124899999999999999999998765   3322222211  10     


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                            ....+.. ..+.+.  ..++|+|||++.+..  ..+..++.+++...      .+...+|+|||..++.+....
T Consensus        80 ------~~~~~~~-~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~------~~~~~vI~ts~~~p~~l~~~~  144 (233)
T PRK08727         80 ------AAGRLRD-ALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRAR------AAGITLLYTARQMPDGLALVL  144 (233)
T ss_pred             ------hhhhHHH-HHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHH------HcCCeEEEECCCChhhhhhhh
Confidence                  0000111 111222  247999999998863  44556666665432      034568999999888776544


Q ss_pred             HHHHHh
Q psy1695         178 LELRKS  183 (202)
Q Consensus       178 ~~~~~~  183 (202)
                      -++..+
T Consensus       145 ~dL~SR  150 (233)
T PRK08727        145 PDLRSR  150 (233)
T ss_pred             HHHHHH
Confidence            444443

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.24  E-value=1.8e-11  Score=103.70  Aligned_cols=135  Identities=13%  Similarity=0.171  Sum_probs=97.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--C
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~  100 (202)
                      .+||+..|+..+.+.+.--...+.      .+|+.|++||||-.+|++|.+.-..   .  ..+|+.++++.+..+.  .
T Consensus       224 ~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~~S~R---~--~kPfV~~NCAAlPesLlES  292 (550)
T COG3604         224 GIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQLSPR---R--DKPFVKLNCAALPESLLES  292 (550)
T ss_pred             cceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHhhCcc---c--CCCceeeeccccchHHHHH
Confidence            699999999999999887665433      7999999999999999999988433   2  5678888887664321  0


Q ss_pred             chhHHHHHHhHHHHHHhhhh-------CCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTA-------CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~-------~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~  169 (202)
                      ..+| +.   ++.+++++..       +..+.+|+|||..+|...|..|+.+|.++.+-. |   .-.-.+.+|..||..
T Consensus       293 ELFG-He---KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD  368 (550)
T COG3604         293 ELFG-HE---KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD  368 (550)
T ss_pred             HHhc-cc---ccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh
Confidence            1111 11   2333333333       234889999999999999999999999987642 1   233467789999987


Q ss_pred             hHH
Q psy1695         170 GTE  172 (202)
Q Consensus       170 ~~~  172 (202)
                      -+.
T Consensus       369 L~~  371 (550)
T COG3604         369 LEE  371 (550)
T ss_pred             HHH
Confidence            543

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.23  E-value=1.3e-11  Score=103.35  Aligned_cols=142  Identities=11%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695          16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI   95 (202)
Q Consensus        16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   95 (202)
                      +...-.+.++|.+...+.+.+.++....      ..+++|+.|++||||+.+|+.|+.. ..   .....+|+.++++.+
T Consensus        72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap------~~~~vLi~GetGtGKel~A~~iH~~-s~---r~~~~PFI~~NCa~~  141 (403)
T COG1221          72 LKSEALDDLIGESPSLQELREQIKAYAP------SGLPVLIIGETGTGKELFARLIHAL-SA---RRAEAPFIAFNCAAY  141 (403)
T ss_pred             ccchhhhhhhccCHHHHHHHHHHHhhCC------CCCcEEEecCCCccHHHHHHHHHHh-hh---cccCCCEEEEEHHHh
Confidence            3344556899999999999999998432      3346899999999999999999944 22   113678888888766


Q ss_pred             cCCCCc--hhHHHHHHhHHHHHH-------hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc----cccCCceEE
Q psy1695          96 HFPNEN--HVSLYRLQLTNWIIS-------NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN----QISFQNTIF  162 (202)
Q Consensus        96 ~~~~~~--~~~~~~~~l~~~~~~-------~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~----~~~~~~~~~  162 (202)
                      ......  .+| +.   .+.+++       .+.....+.+++|||.++|+..|..|+++||++.+..    +....++.+
T Consensus       142 ~en~~~~eLFG-~~---kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRl  217 (403)
T COG1221         142 SENLQEAELFG-HE---KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRL  217 (403)
T ss_pred             CcCHHHHHHhc-cc---cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCcee
Confidence            433211  111 11   111112       2333445899999999999999999999999998752    235567788


Q ss_pred             EEeeCcChH
Q psy1695         163 LFLSNSGGT  171 (202)
Q Consensus       163 Iltsn~~~~  171 (202)
                      |.+||-..+
T Consensus       218 i~AT~~~l~  226 (403)
T COG1221         218 ICATTEDLE  226 (403)
T ss_pred             eeccccCHH
Confidence            888876644

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.22  E-value=1e-10  Score=106.56  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++.|.+.+++.+.+.+...+..+.     .-..|.+++|+||||||||++|+++|+.+..        .++.+....+..
T Consensus       179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--------~~i~i~~~~i~~  250 (733)
T TIGR01243       179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--------YFISINGPEIMS  250 (733)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--------eEEEEecHHHhc
Confidence            488999999999888765332211     0124557999999999999999999998533        333333332221


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ..   .+..... ...+.+........|++|||+|.+.+           .+++.|+.+|+.-.     .....++|.+|
T Consensus       251 ~~---~g~~~~~-l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----~~~~vivI~at  321 (733)
T TIGR01243       251 KY---YGESEER-LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----GRGRVIVIGAT  321 (733)
T ss_pred             cc---ccHHHHH-HHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----cCCCEEEEeec
Confidence            11   1111111 22233333334457999999987642           35677888886532     11456667777


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       322 n~~~  325 (733)
T TIGR01243       322 NRPD  325 (733)
T ss_pred             CChh
Confidence            7643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0729|consensus

Probab=99.21  E-value=4.4e-11  Score=94.50  Aligned_cols=133  Identities=17%  Similarity=0.236  Sum_probs=86.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|-.+.++.+.+.+..-+.++.     ....|.+++++||||||||.+|+++|+..        ..-|+++..+.+..
T Consensus       178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt--------dacfirvigselvq  249 (435)
T KOG0729|consen  178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT--------DACFIRVIGSELVQ  249 (435)
T ss_pred             cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc--------CceEEeehhHHHHH
Confidence            456677778888777765333222     13456789999999999999999999873        23466665554422


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCccccccc-CCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQIS-FQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~-~~~~~~Ilt  165 (202)
                         .|++ ....+...+.++.+.....++||||+|...           .++|..++.++..   .++.+ -.|.-+.+.
T Consensus       250 ---kyvg-egarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q---ldgfdprgnikvlma  322 (435)
T KOG0729|consen  250 ---KYVG-EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ---LDGFDPRGNIKVLMA  322 (435)
T ss_pred             ---HHhh-hhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh---ccCCCCCCCeEEEee
Confidence               2333 222345667777676777999999997653           3577777776654   22322 256667777


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      ||...
T Consensus       323 tnrpd  327 (435)
T KOG0729|consen  323 TNRPD  327 (435)
T ss_pred             cCCCC
Confidence            77653

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.21  E-value=9.8e-11  Score=96.79  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=71.6

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhccccC------cCccchhhhhcc---ccc--CCC-----Cc----hhHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD------KGTSRFVHKFNS---RIH--FPN-----EN----HVSLYRL  108 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~~~---~~~--~~~-----~~----~~~~~~~  108 (202)
                      +.|.+++|+||+|+|||++|+.+|+.+.|..+.      +.+..+..+...   ++.  .+.     .+    .++  .+
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~--id   96 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK--ID   96 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC--HH
Confidence            367789999999999999999999999873211      111111111111   110  000     00    111  11


Q ss_pred             HhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         109 QLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       109 ~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      + .+.+.+.+..    +++.|+++|+++.+++..++.|++.|++++       .+++||++|+...
T Consensus        97 ~-iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------~~~~~Ilvth~~~  154 (325)
T PRK08699         97 A-VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-------PQVVFLLVSHAAD  154 (325)
T ss_pred             H-HHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-------CCCEEEEEeCChH
Confidence            2 2223333433    345899999999999999999999999976       6688888887654

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.21  E-value=1.7e-10  Score=98.10  Aligned_cols=130  Identities=18%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhhh----ccccc-CCCCchhHHHHH---HhHHHHHHhhhh-C
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHKF----NSRIH-FPNENHVSLYRL---QLTNWIISNVTA-C  121 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~~----~~~~~-~~~~~~~~~~~~---~l~~~~~~~l~~-~  121 (202)
                      +++|+||||||||++|+.+|..+..   ...  ...++.+.    ...+. +..+..++ |..   .+......+... .
T Consensus       196 ~iil~GppGtGKT~lA~~la~~l~~---~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg-y~~~~G~f~~~~~~A~~~p~  271 (459)
T PRK11331        196 NIILQGPPGVGKTFVARRLAYLLTG---EKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG-FRRKDGIFYNFCQQAKEQPE  271 (459)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcC---CcccceeeEEeecccccHHHHhcccCCCCCC-eEecCchHHHHHHHHHhccc
Confidence            6899999999999999999998754   110  00111110    01111 11111111 110   011112222111 1


Q ss_pred             CceEEEEecCCCCChh-HHHHHHHhcccCcc----------cc----c-ccCCceEEEEeeCcChHHHHHHHHHHHHhhh
Q psy1695         122 DRAIFIFDEVDKFPKG-LLDVIIPFIDHHAV----------YN----Q-ISFQNTIFLFLSNSGGTEIMNTFLELRKSEC  185 (202)
Q Consensus       122 ~~~viiiDEid~~~~~-~~~~L~~~le~~~~----------~~----~-~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~  185 (202)
                      ...++||||+++.+.+ ++..++++||...-          ..    . .--.|..+|.|.|.....+.    .+-.+.+
T Consensus       272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~----~lD~Alr  347 (459)
T PRK11331        272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA----VVDYALR  347 (459)
T ss_pred             CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh----hccHHHH
Confidence            2479999999999965 68889999986310          00    0 13367888999998875432    2455556


Q ss_pred             HHHHh
Q psy1695         186 IEFIF  190 (202)
Q Consensus       186 ~r~~~  190 (202)
                      +||.+
T Consensus       348 RRF~f  352 (459)
T PRK11331        348 RRFSF  352 (459)
T ss_pred             hhhhe
Confidence            66655

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.21  E-value=7.6e-11  Score=93.37  Aligned_cols=99  Identities=9%  Similarity=0.077  Sum_probs=57.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+||+||||||+++++++.+..   .+....|+.....         .. +.    ..+.+.+..  .++++|||++
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~---------~~-~~----~~~~~~~~~--~dlliiDdi~  107 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKR---------AW-FV----PEVLEGMEQ--LSLVCIDNIE  107 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHH---------hh-hh----HHHHHHhhh--CCEEEEeChh
Confidence            6899999999999999999998664   3222222222110         00 10    111122222  3689999999


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .+..  ..+..|..++....     +..+..+|+||+..+..+..
T Consensus       108 ~~~~~~~~~~~lf~l~n~~~-----e~g~~~li~ts~~~p~~l~~  147 (235)
T PRK08084        108 CIAGDELWEMAIFDLYNRIL-----ESGRTRLLITGDRPPRQLNL  147 (235)
T ss_pred             hhcCCHHHHHHHHHHHHHHH-----HcCCCeEEEeCCCChHHcCc
Confidence            9864  33444444443321     01345688899887766543

>KOG0726|consensus

Probab=99.20  E-value=6.8e-11  Score=94.45  Aligned_cols=146  Identities=16%  Similarity=0.207  Sum_probs=91.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|-+..++.+.+++.--+.+|.     ..+.|.++++||+||||||.+|+++|+..        +..|+++..+.+..
T Consensus       186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT--------SATFlRvvGseLiQ  257 (440)
T KOG0726|consen  186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT--------SATFLRVVGSELIQ  257 (440)
T ss_pred             ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc--------chhhhhhhhHHHHH
Confidence            466778788888888865443332     13456789999999999999999999873        23566665554432


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt  165 (202)
                      ...+.    ...+.++++........+|+||||||....           ++|..++.+|..   .++. +-..+-+|++
T Consensus       258 kylGd----GpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ---ldGFdsrgDvKvimA  330 (440)
T KOG0726|consen  258 KYLGD----GPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ---LDGFDSRGDVKVIMA  330 (440)
T ss_pred             HHhcc----chHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh---ccCccccCCeEEEEe
Confidence            22111    112344455555555568999999976532           567777777654   2233 2356678888


Q ss_pred             eCcChHHHHHHHHHHHHhhhHH
Q psy1695         166 SNSGGTEIMNTFLELRKSECIE  187 (202)
Q Consensus       166 sn~~~~~i~~~~~~~~~~~~~r  187 (202)
                      ||.-...    ...+.+.||.+
T Consensus       331 Tnrie~L----DPaLiRPGrID  348 (440)
T KOG0726|consen  331 TNRIETL----DPALIRPGRID  348 (440)
T ss_pred             ccccccc----CHhhcCCCccc
Confidence            8875431    12246667654

>KOG0737|consensus

Probab=99.20  E-value=6.3e-11  Score=97.09  Aligned_cols=163  Identities=18%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++=|-+..++.+.+.+.-.+..+.      --+.|.+++++||||||||.+|+++|+...        ..|+.+.++.+.
T Consensus        93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--------a~fInv~~s~lt  164 (386)
T KOG0737|consen   93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--------ANFINVSVSNLT  164 (386)
T ss_pred             hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--------CCcceeeccccc
Confidence            355666777777666654222211      023566899999999999999999999942        356666666554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-------hhH----HHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-------KGL----LDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-------~~~----~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ..+   .+ -.+.+.+.+......-...+|+|||+|.+-       .++    -+.++...+.-.   ..+...++++.+
T Consensus       165 ~KW---fg-E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~---s~~~~rVlVlgA  237 (386)
T KOG0737|consen  165 SKW---FG-EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS---SKDSERVLVLGA  237 (386)
T ss_pred             hhh---HH-HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc---CCCCceEEEEeC
Confidence            322   12 122233444443334445899999997663       111    112222111100   012224555556


Q ss_pred             eCcChHHHHHHHHHH----HHhhhHHHHhccchhHHHhhc
Q psy1695         166 SNSGGTEIMNTFLEL----RKSECIEFIFQCQPLKVYLKK  201 (202)
Q Consensus       166 sn~~~~~i~~~~~~~----~~~~~~r~~~~~~~~~~~~~~  201 (202)
                      ||...+ +-++.+..    ..-+-|+-.-|-+.|+++||+
T Consensus       238 TNRP~D-lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~  276 (386)
T KOG0737|consen  238 TNRPFD-LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK  276 (386)
T ss_pred             CCCCcc-HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence            666544 34443321    112334455566779999986

>PRK06921 hypothetical protein; Provisional

Probab=99.18  E-value=5.4e-10  Score=90.02  Aligned_cols=103  Identities=12%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccC-cCccchhhhhcccccCCCCchhHHHHHHh--HHHHHHhhhhCCceEEEEe
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGTSRFVHKFNSRIHFPNENHVSLYRLQL--TNWIISNVTACDRAIFIFD  129 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~~~~~~viiiD  129 (202)
                      .++|+||+|+|||+|+.++++.+..   . +...-|+..  ..+       +......+  .......+  ...++||||
T Consensus       119 ~l~l~G~~G~GKThLa~aia~~l~~---~~g~~v~y~~~--~~l-------~~~l~~~~~~~~~~~~~~--~~~dlLiID  184 (266)
T PRK06921        119 SIALLGQPGSGKTHLLTAAANELMR---KKGVPVLYFPF--VEG-------FGDLKDDFDLLEAKLNRM--KKVEVLFID  184 (266)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHhh---hcCceEEEEEH--HHH-------HHHHHHHHHHHHHHHHHh--cCCCEEEEe
Confidence            6899999999999999999999765   3 222212111  000       00000000  01111222  234899999


Q ss_pred             cCCC-------CChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         130 EVDK-------FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       130 Eid~-------~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      |++.       .+...++.|..+++....      ++..+|+|||...+.+.+
T Consensus       185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~------~~k~tIitsn~~~~el~~  231 (266)
T PRK06921        185 DLFKPVNGKPRATEWQIEQMYSVLNYRYL------NHKPILISSELTIDELLD  231 (266)
T ss_pred             ccccccCCCccCCHHHHHHHHHHHHHHHH------CCCCEEEECCCCHHHHhh
Confidence            9943       445566778888876420      245678999999988765

>KOG0990|consensus

Probab=99.18  E-value=4.2e-11  Score=96.46  Aligned_cols=141  Identities=18%  Similarity=0.118  Sum_probs=88.6

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSR   86 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~   86 (202)
                      |+..|+...|.     .+++|++.+..+.+.    ...   ++.| +++|+||||+|||+...+.|+.+++.++  ..+.
T Consensus        31 wvekyrP~~l~-----dv~~~~ei~st~~~~----~~~---~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~--~~~m   95 (360)
T KOG0990|consen   31 WVEKYRPPFLG-----IVIKQEPIWSTENRY----SGM---PGLP-HLLFYGPPGTGKTSTILANARDFYSPHP--TTSM   95 (360)
T ss_pred             CccCCCCchhh-----hHhcCCchhhHHHHh----ccC---CCCC-cccccCCCCCCCCCchhhhhhhhcCCCC--chhH
Confidence            44555555554     588888777666544    222   2355 7999999999999999999999887311  1222


Q ss_pred             hhhhhcccccCCCCchhHHHHHHhHHHHH--Hhhh-hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEE
Q psy1695          87 FVHKFNSRIHFPNENHVSLYRLQLTNWII--SNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~-~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                      ....+.+.-.+.+  .+. .+........  ..+. .....++|+||+|.|..++||+|.++++...       .++.|+
T Consensus        96 ~lelnaSd~rgid--~vr-~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-------~n~rF~  165 (360)
T KOG0990|consen   96 LLELNASDDRGID--PVR-QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-------ANTRFA  165 (360)
T ss_pred             HHHhhccCccCCc--chH-HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-------cceEEE
Confidence            3333333221111  111 1110010000  0111 1356899999999999999999999998876       788999


Q ss_pred             EeeCcChHH
Q psy1695         164 FLSNSGGTE  172 (202)
Q Consensus       164 ltsn~~~~~  172 (202)
                      +++|.....
T Consensus       166 ii~n~~~ki  174 (360)
T KOG0990|consen  166 TISNPPQKI  174 (360)
T ss_pred             EeccChhhc
Confidence            999886654

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.17  E-value=1.8e-10  Score=104.16  Aligned_cols=138  Identities=14%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC--C
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN--E  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~  100 (202)
                      .++|+..+++.+.+.+........      +++++|++|||||++|++|......   .  ..+++.+++..+....  .
T Consensus       377 ~liG~S~~~~~~~~~~~~~a~~~~------pVLI~GE~GTGK~~lA~~ih~~s~r---~--~~~~v~i~c~~~~~~~~~~  445 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMVAQSDS------TVLILGETGTGKELIARAIHNLSGR---N--NRRMVKMNCAAMPAGLLES  445 (686)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHhcCC---C--CCCeEEEecccCChhHhhh
Confidence            599999999999999988764432      6899999999999999999887433   2  3456655554331100  0


Q ss_pred             chhH----HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHH
Q psy1695         101 NHVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       101 ~~~~----~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~  172 (202)
                      ..++    .+... .....+.+.....++++|||++.++...|..|+.+++++.+...    ....++.+|++|+...+.
T Consensus       446 ~lfg~~~~~~~g~-~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~  524 (686)
T PRK15429        446 DLFGHERGAFTGA-SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK  524 (686)
T ss_pred             hhcCccccccccc-ccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHH
Confidence            0000    00000 00011223344568999999999999999999999998764321    123567889999876543

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.6e-11  Score=102.50  Aligned_cols=158  Identities=15%  Similarity=0.153  Sum_probs=94.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-----hccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-----FNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-----~~~~~~   96 (202)
                      ++|+||+.|++.+.-+....          ++++|+||||||||.+|..+...|-+   .. ..+.+++     ....++
T Consensus       179 ~DV~GQ~~AKrAleiAAAGg----------HnLl~~GpPGtGKTmla~Rl~~lLPp---ls-~~E~lE~s~I~s~~g~~~  244 (490)
T COG0606         179 KDVKGQEQAKRALEIAAAGG----------HNLLLVGPPGTGKTMLASRLPGLLPP---LS-IPEALEVSAIHSLAGDLH  244 (490)
T ss_pred             hhhcCcHHHHHHHHHHHhcC----------CcEEEecCCCCchHHhhhhhcccCCC---CC-hHHHHHHHHHhhhccccc
Confidence            36999999998886555421          26999999999999999998887644   11 1111111     111111


Q ss_pred             C----------CCCchhHHHHHHhHH----HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-----c-c
Q psy1695          97 F----------PNENHVSLYRLQLTN----WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----I-S  156 (202)
Q Consensus        97 ~----------~~~~~~~~~~~~l~~----~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-----~-~  156 (202)
                      .          ..+.... ....+.+    .-.+.+..+..+|+|+||.-.....+++.|.+-||++.++-.     + .
T Consensus       245 ~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~y  323 (490)
T COG0606         245 EGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTY  323 (490)
T ss_pred             ccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEE
Confidence            1          0010000 0000000    001112223358999999999999999999999999976532     1 2


Q ss_pred             CCceEEEEeeCc---------------ChHHHHHHHHHHHHhhhHHHHhccch
Q psy1695         157 FQNTIFLFLSNS---------------GGTEIMNTFLELRKSECIEFIFQCQP  194 (202)
Q Consensus       157 ~~~~~~Iltsn~---------------~~~~i~~~~~~~~~~~~~r~~~~~~~  194 (202)
                      ..+-.+|+++|.               +...+..+.-...-..++|+++.+..
T Consensus       324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev  376 (490)
T COG0606         324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEV  376 (490)
T ss_pred             eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecc
Confidence            233445666675               34455556666667777788776653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.16  E-value=3.2e-11  Score=94.58  Aligned_cols=97  Identities=8%  Similarity=0.122  Sum_probs=59.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  130 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE  130 (202)
                      +.+++|+||+|||||++|+++++.+..   .+  ..++.+.+..+.           .. ...+.+.+.  ..++++|||
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~---~~--~~~~~i~~~~~~-----------~~-~~~~~~~~~--~~~lLvIDd   98 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEE---RG--KSAIYLPLAELA-----------QA-DPEVLEGLE--QADLVCLDD   98 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHh---cC--CcEEEEeHHHHH-----------Hh-HHHHHhhcc--cCCEEEEeC
Confidence            347899999999999999999998654   21  122222222110           00 011112222  236999999


Q ss_pred             CCCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         131 VDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       131 id~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                      ++.++...  ++.|..+++...     + .+..+|+||+.....
T Consensus        99 i~~l~~~~~~~~~L~~~l~~~~-----~-~~~~iIits~~~~~~  136 (226)
T TIGR03420        99 VEAIAGQPEWQEALFHLYNRVR-----E-AGGRLLIAGRAAPAQ  136 (226)
T ss_pred             hhhhcCChHHHHHHHHHHHHHH-----H-cCCeEEEECCCChHH
Confidence            99998744  788888876532     0 234678888876543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.15  E-value=4.3e-11  Score=98.10  Aligned_cols=126  Identities=13%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------cccCCC-----Cch-hHHHHHHhHHHHHHhhhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------RIHFPN-----ENH-VSLYRLQLTNWIISNVTA  120 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~-~~~~~~~l~~~~~~~l~~  120 (202)
                      +++|.||||||||++++.+|+.+..        +++++.+.      ++.+..     .+. ...|.   .+.+..+.. 
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~--------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~---~GpL~~A~~-  133 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNW--------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFR---DGILPWALQ-  133 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCC--------CeEEEEecCCCChhhcCCCceeeccCCcceeEEe---cCcchhHHh-
Confidence            5899999999999999999999744        23333221      111111     000 00011   111211211 


Q ss_pred             CCceEEEEecCCCCChhHHHHHHHhccc-Ccccc---c--c-cCCceEEEEeeCcChH----HHHHHHHHHHHhhhHHHH
Q psy1695         121 CDRAIFIFDEVDKFPKGLLDVIIPFIDH-HAVYN---Q--I-SFQNTIFLFLSNSGGT----EIMNTFLELRKSECIEFI  189 (202)
Q Consensus       121 ~~~~viiiDEid~~~~~~~~~L~~~le~-~~~~~---~--~-~~~~~~~Iltsn~~~~----~i~~~~~~~~~~~~~r~~  189 (202)
                       ...++++||++++++++++.|..+||. +.++.   +  . ....-.+|.|+|....    ..-....++..+..+||.
T Consensus       134 -~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~  212 (327)
T TIGR01650       134 -HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS  212 (327)
T ss_pred             -CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence             235799999999999999999999995 34431   1  2 3345678999997431    111222334566666665


Q ss_pred             hc
Q psy1695         190 FQ  191 (202)
Q Consensus       190 ~~  191 (202)
                      +.
T Consensus       213 i~  214 (327)
T TIGR01650       213 IV  214 (327)
T ss_pred             eE
Confidence            43

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR00368 Mg chelatase-related protein

Probab=99.14  E-value=1.4e-10  Score=100.74  Aligned_cols=161  Identities=15%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-Cc-cchhhh---h-----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-GT-SRFVHK---F-----   91 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~~-~~~~~~---~-----   91 (202)
                      .+++||..+++.+..++.    ..      .+++|.||||+|||++++.++..+.+..... .. ......   .     
T Consensus       192 ~dv~Gq~~~~~al~~aa~----~g------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~  261 (499)
T TIGR00368       192 KDIKGQQHAKRALEIAAA----GG------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQ  261 (499)
T ss_pred             HHhcCcHHHHhhhhhhcc----CC------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccc
Confidence            458999988766544432    22      2689999999999999999998754410000 00 000000   0     


Q ss_pred             cccccCCCCchhHHHHHHh-HH---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c--c-cCCceE
Q psy1695          92 NSRIHFPNENHVSLYRLQL-TN---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q--I-SFQNTI  161 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l-~~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~--~-~~~~~~  161 (202)
                      ...-.+..+.... ....+ .+   .-.+.+..+..++++|||++.+++.+++.|++.||++.+.-   +  . --.+..
T Consensus       262 ~~~~Pf~~p~~s~-s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~fr  340 (499)
T TIGR00368       262 IKQRPFRSPHHSA-SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQ  340 (499)
T ss_pred             cccCCcccccccc-chhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeE
Confidence            0000000000000 00000 00   01123445566899999999999999999999999987431   1  1 224678


Q ss_pred             EEEeeCcC---------------hHHHHHHHHHHHHhhhHHHHhccc
Q psy1695         162 FLFLSNSG---------------GTEIMNTFLELRKSECIEFIFQCQ  193 (202)
Q Consensus       162 ~Iltsn~~---------------~~~i~~~~~~~~~~~~~r~~~~~~  193 (202)
                      +|.++|..               +..+.++.........+||++.+.
T Consensus       341 lIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~  387 (499)
T TIGR00368       341 LVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVE  387 (499)
T ss_pred             EEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEE
Confidence            89999963               234555566666677778877653

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0728|consensus

Probab=99.14  E-value=2.1e-10  Score=90.00  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      +=|.+..++.+.+.+.--..+|.     +..+|.+++|+||||||||.+|+++|.+..+        .|+++..+.+.. 
T Consensus       149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c--------~firvsgselvq-  219 (404)
T KOG0728|consen  149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--------TFIRVSGSELVQ-  219 (404)
T ss_pred             hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce--------EEEEechHHHHH-
Confidence            44556666777666654222211     1346779999999999999999999998544        355554443321 


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEEee
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLS  166 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilts  166 (202)
                        .+++ ....+...+.-+.+....+++|.||||...           .++|..++.++..   .++. ...|.-+|++|
T Consensus       220 --k~ig-egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq---ldgfeatknikvimat  293 (404)
T KOG0728|consen  220 --KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ---LDGFEATKNIKVIMAT  293 (404)
T ss_pred             --HHhh-hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh---ccccccccceEEEEec
Confidence              1222 111223344444455556899999998763           3577777776654   1232 34677788999


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |.-.
T Consensus       294 nrid  297 (404)
T KOG0728|consen  294 NRID  297 (404)
T ss_pred             cccc
Confidence            8753

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.13  E-value=2.2e-10  Score=105.36  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcC-ccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKG-TSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~  100 (202)
                      .++|++..++.+.+.+.+...        .+++|+||||||||++|+.+|+.+... .+... ...++..+++.+.. ..
T Consensus       180 ~~igr~~ei~~~~~~L~r~~~--------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a-g~  250 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRTK--------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA-GT  250 (821)
T ss_pred             CCCCcHHHHHHHHHHHccccc--------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-cC
Confidence            589999999998888775421        156899999999999999999997531 00000 12333344332221 11


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+.+.+.+.+...+ +.+...+..|+||||++.+..        ++.+.|.+.+.+|         ...+|.+||..
T Consensus       251 ~~~ge~e~rl~~i~-~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg---------~l~~IgaTt~~  317 (821)
T CHL00095        251 KYRGEFEERLKRIF-DEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG---------ELQCIGATTLD  317 (821)
T ss_pred             CCccHHHHHHHHHH-HHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC---------CcEEEEeCCHH
Confidence            23344444444433 333444557999999975532        4678888888875         45666766643

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.13  E-value=7.2e-10  Score=93.98  Aligned_cols=135  Identities=15%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc-------
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-------   92 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------   92 (202)
                      ..+.++|++..++.+...+.....+.    .|..++++||||||||++++.+++.+..   .+....++.+++       
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~~~----~~~~~lI~G~~GtGKT~l~~~v~~~l~~---~~~~~~~v~in~~~~~~~~  100 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALRGS----RPLNVLIYGPPGTGKTTTVKKVFEELEE---IAVKVVYVYINCQIDRTRY  100 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---hcCCcEEEEEECCcCCCHH
Confidence            44679999999999999998866432    4446899999999999999999998754   210011111111       


Q ss_pred             -------ccccC-CCC-chhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC----hhHHHHHHHhcccCcccccccCC
Q psy1695          93 -------SRIHF-PNE-NHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQ  158 (202)
Q Consensus        93 -------~~~~~-~~~-~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~----~~~~~~L~~~le~~~~~~~~~~~  158 (202)
                             ..+.. ..+ .... +. .+...+.+.+... ...||+|||+|.+.    .+.+..|+..++...      ..
T Consensus       101 ~~~~~i~~~l~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~------~~  172 (394)
T PRK00411        101 AIFSEIARQLFGHPPPSSGLS-FD-ELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP------GA  172 (394)
T ss_pred             HHHHHHHHHhcCCCCCCCCCC-HH-HHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC------CC
Confidence                   11111 000 0000 11 1223333444433 34789999999886    344555555444321      13


Q ss_pred             ceEEEEeeCcC
Q psy1695         159 NTIFLFLSNSG  169 (202)
Q Consensus       159 ~~~~Iltsn~~  169 (202)
                      +..+|+++|..
T Consensus       173 ~v~vI~i~~~~  183 (394)
T PRK00411        173 RIGVIGISSDL  183 (394)
T ss_pred             eEEEEEEECCc
Confidence            67788888864

>KOG2035|consensus

Probab=99.13  E-value=2.3e-10  Score=90.67  Aligned_cols=132  Identities=11%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-------------ccchhhh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-------------TSRFVHK   90 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-------------~~~~~~~   90 (202)
                      +++.++....+.....    .   .+-| +++|+||+|+||.+.+.++-+.+++   .|.             ...-+++
T Consensus        15 l~~~~e~~~~Lksl~~----~---~d~P-Hll~yGPSGaGKKTrimclL~elYG---~gveklki~~~t~~tpS~kklEi   83 (351)
T KOG2035|consen   15 LIYHEELANLLKSLSS----T---GDFP-HLLVYGPSGAGKKTRIMCLLRELYG---VGVEKLKIETRTFTTPSKKKLEI   83 (351)
T ss_pred             cccHHHHHHHHHHhcc----c---CCCC-eEEEECCCCCCchhhHHHHHHHHhC---CCchheeeeeEEEecCCCceEEE
Confidence            6667665555533222    1   1245 7999999999999999999999998   332             0000111


Q ss_pred             h--cccccC-CCCchhHHHHHHhHHHHHHhh---------hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCC
Q psy1695          91 F--NSRIHF-PNENHVSLYRLQLTNWIISNV---------TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQ  158 (202)
Q Consensus        91 ~--~~~~~~-~~~~~~~~~~~~l~~~~~~~l---------~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~  158 (202)
                      .  .+.++- -.|+..|-++..+...+.+.+         .+.++.|++|.|+|.+..++|..|.+.||...       +
T Consensus        84 stvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-------~  156 (351)
T KOG2035|consen   84 STVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-------S  156 (351)
T ss_pred             EEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-------c
Confidence            1  111111 112223322222222222212         22356999999999999999999999999987       8


Q ss_pred             ceEEEEeeCcChHHH
Q psy1695         159 NTIFLFLSNSGGTEI  173 (202)
Q Consensus       159 ~~~~Iltsn~~~~~i  173 (202)
                      ++.+|+.+|..+..|
T Consensus       157 ~~RlIl~cns~SriI  171 (351)
T KOG2035|consen  157 NCRLILVCNSTSRII  171 (351)
T ss_pred             CceEEEEecCcccch
Confidence            889999999876654

>KOG0735|consensus

Probab=99.13  E-value=1.6e-10  Score=101.50  Aligned_cols=146  Identities=16%  Similarity=0.180  Sum_probs=90.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC----C-CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY----H-NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~----~-~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++-|-.++++.+.+.+..-..++.    + -+.+.+++|+||||||||++|.++|....-        .|+.+-.+++  
T Consensus       668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~--------~fisvKGPEl--  737 (952)
T KOG0735|consen  668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL--------RFISVKGPEL--  737 (952)
T ss_pred             ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe--------eEEEecCHHH--
Confidence            466777777777776654222211    0 122337999999999999999999988211        2332222211  


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                       ...|+|..+ +-.+.+.+..+.+...|+||||+|...|           .+.|.|+.-||...      --..++|+.+
T Consensus       738 -L~KyIGaSE-q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl~GV~i~aa  809 (952)
T KOG0735|consen  738 -LSKYIGASE-QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------GLDGVYILAA  809 (952)
T ss_pred             -HHHHhcccH-HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------ccceEEEEEe
Confidence             112333222 2233444555556668999999988865           37888888887533      2456778888


Q ss_pred             CcChHHHHHHHHHHHHhhhHHHH
Q psy1695         167 NSGGTEIMNTFLELRKSECIEFI  189 (202)
Q Consensus       167 n~~~~~i~~~~~~~~~~~~~r~~  189 (202)
                      +..++.|..+   +.|.||.+-.
T Consensus       810 TsRpdliDpA---LLRpGRlD~~  829 (952)
T KOG0735|consen  810 TSRPDLIDPA---LLRPGRLDKL  829 (952)
T ss_pred             cCCccccCHh---hcCCCcccee
Confidence            8888877666   4566665443

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.12  E-value=6.2e-10  Score=93.40  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+.++|++..++.+...+.....+.    .|..++++||||||||++++.+++.+..
T Consensus        13 ~p~~l~gRe~e~~~l~~~l~~~~~~~----~~~~i~I~G~~GtGKT~l~~~~~~~l~~   66 (365)
T TIGR02928        13 VPDRIVHRDEQIEELAKALRPILRGS----RPSNVFIYGKTGTGKTAVTKYVMKELEE   66 (365)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34579999999999999998866432    4446899999999999999999988753

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.12  E-value=2.3e-10  Score=105.59  Aligned_cols=129  Identities=14%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~  100 (202)
                      .++||+..++.+...+.+...+        ..+|+||||||||++++.+++.+.... +.. ....++..++..+.. ..
T Consensus       174 ~~igr~~ei~~~~~~l~r~~~~--------n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a-~~  244 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA-GA  244 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCCCC--------ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-cc
Confidence            4999999888887777653211        467999999999999999999864410 000 011122222222110 11


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+.+.+...+...+...-......|+||||++.+..        ++.+.|.+.+++|         ...+|.+||..
T Consensus       245 ~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------~i~~IgaTt~~  312 (852)
T TIGR03346       245 KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------ELHCIGATTLD  312 (852)
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------ceEEEEeCcHH
Confidence            222223333333333222223457999999997752        3667787777664         46677777654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.12  E-value=1.3e-09  Score=88.96  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-----hCCce
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----ACDRA  124 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-----~~~~~  124 (202)
                      .+++++|+|+.|.||+.+|..+++.+.|..+.+........+...+. .....++  .+++.. +.+.+.     .+++.
T Consensus        17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g~~i~--vd~Ir~-l~~~~~~~~~~~~~~K   92 (299)
T PRK07132         17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFDKDLS--KSEFLS-AINKLYFSSFVQSQKK   92 (299)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCCCcCC--HHHHHH-HHHHhccCCcccCCce
Confidence            45579999999999999999999999773211100000000111111 0011122  122222 222221     24679


Q ss_pred             EEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         125 IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       125 viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      |+|||++|+|+..++|.|++.||+++       .+++||++|+..
T Consensus        93 vvII~~~e~m~~~a~NaLLK~LEEPp-------~~t~~il~~~~~  130 (299)
T PRK07132         93 ILIIKNIEKTSNSLLNALLKTIEEPP-------KDTYFLLTTKNI  130 (299)
T ss_pred             EEEEecccccCHHHHHHHHHHhhCCC-------CCeEEEEEeCCh
Confidence            99999999999999999999999998       899999988733

>KOG0742|consensus

Probab=99.11  E-value=7.3e-10  Score=92.21  Aligned_cols=133  Identities=13%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             Cce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH--HHHHhHHHHHHhhhhCC-ceE
Q psy1695          50 KAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL--YRLQLTNWIISNVTACD-RAI  125 (202)
Q Consensus        50 ~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~-~~v  125 (202)
                      .|. .++||||||||||.+|+.||+.      .|++-       +.+.+.+....+.  ...  ...+.+.-..+. .=+
T Consensus       382 apfRNilfyGPPGTGKTm~ArelAr~------SGlDY-------A~mTGGDVAPlG~qaVTk--iH~lFDWakkS~rGLl  446 (630)
T KOG0742|consen  382 APFRNILFYGPPGTGKTMFARELARH------SGLDY-------AIMTGGDVAPLGAQAVTK--IHKLFDWAKKSRRGLL  446 (630)
T ss_pred             chhhheeeeCCCCCCchHHHHHHHhh------cCCce-------ehhcCCCccccchHHHHH--HHHHHHHHhhcccceE
Confidence            444 5999999999999999999998      44321       1111111111110  111  334444433333 357


Q ss_pred             EEEecCC---------CCChhHHHHHHHhccc-CcccccccCCceEEEEeeCcChH---HHHHHHHHHHHhhhHHHHhcc
Q psy1695         126 FIFDEVD---------KFPKGLLDVIIPFIDH-HAVYNQISFQNTIFLFLSNSGGT---EIMNTFLELRKSECIEFIFQC  192 (202)
Q Consensus       126 iiiDEid---------~~~~~~~~~L~~~le~-~~~~~~~~~~~~~~Iltsn~~~~---~i~~~~~~~~~~~~~r~~~~~  192 (202)
                      +||||+|         +|+.+....|..+|-. |.     ..+..+.++.||...+   .+++.+-+......|-...+.
T Consensus       447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-----qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERf  521 (630)
T KOG0742|consen  447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERF  521 (630)
T ss_pred             EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-----cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHH
Confidence            7899994         4555544445444432 21     2256677888887643   466666666655566666666


Q ss_pred             chhHHHhhcC
Q psy1695         193 QPLKVYLKKL  202 (202)
Q Consensus       193 ~~~~~~~~~~  202 (202)
                      +-|..|+.||
T Consensus       522 kll~lYlnky  531 (630)
T KOG0742|consen  522 KLLNLYLNKY  531 (630)
T ss_pred             HHHHHHHHHH
Confidence            7777787764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.11  E-value=2.8e-10  Score=101.46  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=71.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~   99 (202)
                      ++++||+.++..+.+.+.    .+    .|.+++|+||+|||||++|+++++.........  ...+++.++...+....
T Consensus       154 ~~iiGqs~~~~~l~~~ia----~~----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~  225 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVA----SP----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP  225 (615)
T ss_pred             HhceeCcHHHHHHHHHHh----cC----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence            358999999988755542    11    344699999999999999999988754311010  02334444433221000


Q ss_pred             C----chhHHHHH----HhHHHH---------HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCc
Q psy1695         100 E----NHVSLYRL----QLTNWI---------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHA  150 (202)
Q Consensus       100 ~----~~~~~~~~----~l~~~~---------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~  150 (202)
                      .    ...+...+    .....+         ...+.....+++||||++.+++..++.|+++|+++.
T Consensus       226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~  293 (615)
T TIGR02903       226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR  293 (615)
T ss_pred             HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence            0    00000000    000000         111223345799999999999999999999999875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.11  E-value=1.6e-10  Score=103.52  Aligned_cols=136  Identities=14%  Similarity=0.104  Sum_probs=78.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh-----------cc--ccCcCc----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF-----------KR--YKDKGT----   84 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~-----------~~--~~~~~~----   84 (202)
                      ..|+||+.++..+..++...        ...+++|.|++|||||++|+++++.+-           |.  .+.+.+    
T Consensus         4 ~~ivGq~~~~~al~~~av~~--------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~   75 (633)
T TIGR02442         4 TAIVGQEDLKLALLLNAVDP--------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECR   75 (633)
T ss_pred             chhcChHHHHHHHHHHhhCC--------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhh
Confidence            36999999887665443321        112699999999999999999999972           10  000000    


Q ss_pred             ----------cchhhhhcccccCCCCchhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHHHHHhc
Q psy1695          85 ----------SRFVHKFNSRIHFPNENHVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI  146 (202)
Q Consensus        85 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~l  146 (202)
                                .+|+.+....   .....++..  .+...+        .+.+..+..++++|||++++++.+++.|+++|
T Consensus        76 ~~~~~~~~~~~pfv~~p~~~---t~~~l~G~~--d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l  150 (633)
T TIGR02442        76 RKYRPSEQRPVPFVNLPLGA---TEDRVVGSL--DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA  150 (633)
T ss_pred             hcccccccCCCCeeeCCCCC---cHHHcCCcc--cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence                      1111111000   000001100  001111        12233344589999999999999999999999


Q ss_pred             ccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695         147 DHHAVY---NQI---SFQNTIFLFLSNSGG  170 (202)
Q Consensus       147 e~~~~~---~~~---~~~~~~~Iltsn~~~  170 (202)
                      +++.+.   .+.   --.+..+|.|+|...
T Consensus       151 e~g~~~v~r~g~~~~~~~~~~lIat~np~e  180 (633)
T TIGR02442       151 AMGVNRVEREGLSVSHPARFVLIGTMNPEE  180 (633)
T ss_pred             hcCCEEEEECCceeeecCCeEEEEecCCCC
Confidence            988532   121   124567788888643

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>KOG0651|consensus

Probab=99.09  E-value=5.3e-10  Score=89.93  Aligned_cols=133  Identities=15%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      +-|--..+..+.+.+.-.+.++.     ..+.|+++++|||||+|||.+|+++|..+-.        +++.+..+.+...
T Consensus       134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~--------nfl~v~ss~lv~k  205 (388)
T KOG0651|consen  134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV--------NFLKVVSSALVDK  205 (388)
T ss_pred             hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC--------ceEEeeHhhhhhh
Confidence            44444444454444433332221     2357889999999999999999999999644        3444433333222


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccc-cCCceEEEEee
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQI-SFQNTIFLFLS  166 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilts  166 (202)
                         +++... .+........+..-..++++||+|..           +..++..|+.+++.   .++. ...++-+|+|+
T Consensus       206 ---yiGEsa-RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq---mdgfd~l~rVk~Imat  278 (388)
T KOG0651|consen  206 ---YIGESA-RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ---MDGFDTLHRVKTIMAT  278 (388)
T ss_pred             ---hcccHH-HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh---hccchhcccccEEEec
Confidence               222111 11222222223333389999999654           23567778887774   2332 45778899999


Q ss_pred             CcChH
Q psy1695         167 NSGGT  171 (202)
Q Consensus       167 n~~~~  171 (202)
                      |..+.
T Consensus       279 Nrpdt  283 (388)
T KOG0651|consen  279 NRPDT  283 (388)
T ss_pred             CCccc
Confidence            97653

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.09  E-value=2e-10  Score=109.82  Aligned_cols=127  Identities=11%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC------------------------------
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN------------------------------   99 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   99 (202)
                      .|.++||+||||||||++|+++|.....        +++.+..+.+....                              
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~V--------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYV--------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCC--------ceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence            3458999999999999999999998533        33333332221100                              


Q ss_pred             --------CchhHHHHHH-hHHHHHHhhhhCCceEEEEecCCCCChh-----HHHHHHHhcccCcccccccCCceEEEEe
Q psy1695         100 --------ENHVSLYRLQ-LTNWIISNVTACDRAIFIFDEVDKFPKG-----LLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus       100 --------~~~~~~~~~~-l~~~~~~~l~~~~~~viiiDEid~~~~~-----~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                              .+..+.-... -...+.+..+.....||+|||||.+...     ..+.|+..|+...  ...+.++++||.+
T Consensus      1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--~~~s~~~VIVIAA 1778 (2281)
T CHL00206       1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--ERCSTRNILVIAS 1778 (2281)
T ss_pred             hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--ccCCCCCEEEEEe
Confidence                    0000000000 0122333344445689999999998763     3566776676421  0113357788888


Q ss_pred             eCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         166 SNSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       166 sn~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                      ||... .+-.+   +++.||.+..+
T Consensus      1779 TNRPD-~LDPA---LLRPGRFDR~I 1799 (2281)
T CHL00206       1779 THIPQ-KVDPA---LIAPNKLNTCI 1799 (2281)
T ss_pred             CCCcc-cCCHh---HcCCCCCCeEE
Confidence            88754 33333   35555554333

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.08  E-value=1.2e-09  Score=93.91  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      ++..++|.....  ...++......+.   .+.+++|+||+|+|||+|+.++++.+..   ......++.+....+..  
T Consensus       104 FdnFv~g~~n~~--a~~~~~~~~~~~~---~~n~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~~~f~~--  173 (440)
T PRK14088        104 FENFVVGPGNSF--AYHAALEVAKNPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKFLN--  173 (440)
T ss_pred             ccccccCCchHH--HHHHHHHHHhCcC---CCCeEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHHH--
Confidence            445577755432  2233333333322   2335899999999999999999998754   21111111111111000  


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                       .........-...+.+... ...++++|||++.+..  ..+..|+.++..-.     + .+..+|+||+..++.+...
T Consensus       174 -~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-----~-~~k~iIitsd~~p~~l~~l  244 (440)
T PRK14088        174 -DLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-----D-SGKQIVICSDREPQKLSEF  244 (440)
T ss_pred             -HHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-----H-cCCeEEEECCCCHHHHHHH
Confidence             0000000000011111121 1357999999997742  34556666554321     0 2346788888877766543

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.07  E-value=8.6e-10  Score=95.60  Aligned_cols=132  Identities=12%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|...++..+...+......      ...++++|++||||+++|+++++....   .  ..+|+.++++.+...   .
T Consensus       139 ~lig~s~~~~~l~~~~~~~~~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~i~i~c~~~~~~---~  204 (469)
T PRK10923        139 DIIGEAPAMQDVFRIIGRLSRS------SISVLINGESGTGKELVAHALHRHSPR---A--KAPFIALNMAAIPKD---L  204 (469)
T ss_pred             cceecCHHHHHHHHHHHHHhcc------CCeEEEEeCCCCcHHHHHHHHHhcCCC---C--CCCeEeeeCCCCCHH---H
Confidence            4777777777777777655432      236899999999999999999887433   1  345666666543110   0


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn  167 (202)
                         ....+.+           .-.+.+.....+.++|||++.++...|..|+++++++.+...    ....++.+|+||+
T Consensus       205 ---~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~  281 (469)
T PRK10923        205 ---IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH  281 (469)
T ss_pred             ---HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCC
Confidence               0000000           000112333457899999999999999999999998865431    1234678999998


Q ss_pred             cChH
Q psy1695         168 SGGT  171 (202)
Q Consensus       168 ~~~~  171 (202)
                      ....
T Consensus       282 ~~l~  285 (469)
T PRK10923        282 QNLE  285 (469)
T ss_pred             CCHH
Confidence            7654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.07  E-value=1.2e-09  Score=85.98  Aligned_cols=90  Identities=10%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      +++|+||+|||||++|+++++.+..   .+.  .++.+.....           ..    .. ..  ....++++|||++
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~---~~~--~~~~i~~~~~-----------~~----~~-~~--~~~~~~liiDdi~  100 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASY---GGR--NARYLDAASP-----------LL----AF-DF--DPEAELYAVDDVE  100 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CCC--cEEEEehHHh-----------HH----HH-hh--cccCCEEEEeChh
Confidence            6899999999999999999998654   221  1111111110           00    00 01  1124789999999


Q ss_pred             CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      .++...+..|..+++...     .....++|++++..+
T Consensus       101 ~l~~~~~~~L~~~~~~~~-----~~~~~~vl~~~~~~~  133 (227)
T PRK08903        101 RLDDAQQIALFNLFNRVR-----AHGQGALLVAGPAAP  133 (227)
T ss_pred             hcCchHHHHHHHHHHHHH-----HcCCcEEEEeCCCCH
Confidence            999988889988886532     112334666666543

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.07  E-value=6.4e-10  Score=92.21  Aligned_cols=141  Identities=14%  Similarity=0.120  Sum_probs=76.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-------ccCcCccch-h----h
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-------YKDKGTSRF-V----H   89 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~-~----~   89 (202)
                      ..++||+.++..+.-++-.-        ..-++++.|++|+|||+++++++..+...       .+.....++ +    +
T Consensus         4 ~~ivgq~~~~~al~~~~~~~--------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   75 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVIDP--------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVR   75 (337)
T ss_pred             cccccHHHHHHHHHHHhcCC--------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHh
Confidence            35899999988875444421        11168999999999999999999886220       000000000 0    0


Q ss_pred             h--h-------------cccccC--CCCchhHH--HHHHhHH-H---HHHhhhhCCceEEEEecCCCCChhHHHHHHHhc
Q psy1695          90 K--F-------------NSRIHF--PNENHVSL--YRLQLTN-W---IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFI  146 (202)
Q Consensus        90 ~--~-------------~~~~~~--~~~~~~~~--~~~~l~~-~---~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~l  146 (202)
                      .  .             ..++..  ......+.  +...+.. .   -.+.+..+..+++++||++++++..|+.|+++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l  155 (337)
T TIGR02030        76 IRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA  155 (337)
T ss_pred             hhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence            0  0             000100  00111111  1110000 0   011233344589999999999999999999999


Q ss_pred             ccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695         147 DHHAVY---NQI---SFQNTIFLFLSNSGG  170 (202)
Q Consensus       147 e~~~~~---~~~---~~~~~~~Iltsn~~~  170 (202)
                      +++..+   .+.   --.+.++|.|.|...
T Consensus       156 ~~g~~~v~r~G~~~~~~~r~iviat~np~e  185 (337)
T TIGR02030       156 ASGWNVVEREGISIRHPARFVLVGSGNPEE  185 (337)
T ss_pred             HhCCeEEEECCEEEEcCCCEEEEecccccc
Confidence            987521   221   113455666666553

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>KOG0741|consensus

Probab=99.06  E-value=2.7e-10  Score=97.27  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=69.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCc-cchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh----hCCceEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT-SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRAIFI  127 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~vii  127 (202)
                      +++|+||||||||.+||.|.+.|..++++-.. .++    +..+.+.....+.    .+.....+..+    .+.-+|||
T Consensus       258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI----L~KYVGeSE~NvR----~LFaDAEeE~r~~g~~SgLHIII  329 (744)
T KOG0741|consen  258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI----LNKYVGESEENVR----KLFADAEEEQRRLGANSGLHIII  329 (744)
T ss_pred             eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH----HHHhhcccHHHHH----HHHHhHHHHHHhhCccCCceEEE
Confidence            69999999999999999999998774333111 111    1122222111111    01111111111    22338999


Q ss_pred             EecCCCC-------------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         128 FDEVDKF-------------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       128 iDEid~~-------------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                      |||+|..             +..+.|.|+.=||.-.     ..+|..+|-.||.. +.|.++   +.|.||.+..+
T Consensus       330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-----qLNNILVIGMTNR~-DlIDEA---LLRPGRlEVqm  396 (744)
T KOG0741|consen  330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-----QLNNILVIGMTNRK-DLIDEA---LLRPGRLEVQM  396 (744)
T ss_pred             ehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-----hhhcEEEEeccCch-hhHHHH---hcCCCceEEEE
Confidence            9999644             2356777776666421     45788889888874 445555   45667655443

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.06  E-value=7e-10  Score=100.63  Aligned_cols=128  Identities=11%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~  100 (202)
                      .++|.+..++.+.+.+.+..        +..++|+||||||||++|+.+++.+.... +.. ....++..+...+.. ..
T Consensus       187 ~liGR~~ei~~~i~iL~r~~--------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla-G~  257 (758)
T PRK11034        187 PLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GT  257 (758)
T ss_pred             cCcCCCHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc-cc
Confidence            59999999999988777632        12468999999999999999998764310 000 011111111111111 01


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+.+.+.+.+. .+...+......|+||||++.+         ..++.+.|.+++.+         .+..+|.+||..
T Consensus       258 ~~~Ge~e~rl~-~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~---------g~i~vIgATt~~  325 (758)
T PRK11034        258 KYRGDFEKRFK-ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---------GKIRVIGSTTYQ  325 (758)
T ss_pred             chhhhHHHHHH-HHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC---------CCeEEEecCChH
Confidence            12232333222 2333444555679999999866         12456678888877         456777877764

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.06  E-value=5.3e-10  Score=100.27  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=86.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHh----ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          23 HVHGQELAISHICGALKNHFQ----NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~----~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      ++.|.+.+++.+.+.+.....    .......|.+++|+||||||||+++++++..+..        +++.+..+.+...
T Consensus       153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~--------~f~~is~~~~~~~  224 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--------PFFTISGSDFVEM  224 (644)
T ss_pred             HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------CEEEEehHHhHHh
Confidence            588999888888776654211    0000124557999999999999999999998533        2333222221110


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      ..+..   ... ...+..........||||||+|.+..              ...+.|+..|+.-.     +....++|.
T Consensus       225 ~~g~~---~~~-~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----~~~~vivIa  295 (644)
T PRK10733        225 FVGVG---ASR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIA  295 (644)
T ss_pred             hhccc---HHH-HHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----CCCCeeEEE
Confidence            00000   011 12222223334457999999988732              24555655555421     224678888


Q ss_pred             eeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695         165 LSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK  201 (202)
Q Consensus       165 tsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~  201 (202)
                      +||... .+..++   .+.||.         +...+.+.|+.|+++
T Consensus       296 aTN~p~-~lD~Al---~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~  337 (644)
T PRK10733        296 ATNRPD-VLDPAL---LRPGRFDRQVVVGLPDVRGREQILKVHMRR  337 (644)
T ss_pred             ecCChh-hcCHHH---hCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence            888653 333332   333333         333344456666654

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=9.9e-10  Score=92.11  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      .+.+.+.+.+.-++++...+...+.+.    .|..++++||||||||.+++.+.+.+...   .....++.+++..+..+
T Consensus        14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~----~p~n~~iyG~~GTGKT~~~~~v~~~l~~~---~~~~~~~yINc~~~~t~   86 (366)
T COG1474          14 YIPEELPHREEEINQLASFLAPALRGE----RPSNIIIYGPTGTGKTATVKFVMEELEES---SANVEVVYINCLELRTP   86 (366)
T ss_pred             CCcccccccHHHHHHHHHHHHHHhcCC----CCccEEEECCCCCCHhHHHHHHHHHHHhh---hccCceEEEeeeeCCCH
Confidence            344568999999999999988887654    56679999999999999999999998762   11111333333222111


Q ss_pred             -------------CCchhHHHHHHhHHHHHHhhhh-CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          99 -------------NENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        99 -------------~~~~~~~~~~~l~~~~~~~l~~-~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                                   .+.. +....+....+.+.+.. ...-||++||+|.+.....+.|..++.-+...    ..++.+|+
T Consensus        87 ~~i~~~i~~~~~~~p~~-g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~----~~~v~vi~  161 (366)
T COG1474          87 YQVLSKILNKLGKVPLT-GDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN----KVKVSIIA  161 (366)
T ss_pred             HHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc----ceeEEEEE
Confidence                         1110 00111223444444444 34478899999999876556666665543211    35667788


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      ++|...
T Consensus       162 i~n~~~  167 (366)
T COG1474         162 VSNDDK  167 (366)
T ss_pred             EeccHH
Confidence            887653

>PRK09183 transposase/IS protein; Provisional

Probab=99.05  E-value=7.4e-10  Score=88.93  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHH-hHHHHHHhhh--hCCceEEEEe
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQ-LTNWIISNVT--ACDRAIFIFD  129 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~l~--~~~~~viiiD  129 (202)
                      .++|+||+|||||++|.+++..+..   .+....|+..  ..+       ...+... ....+...+.  ....+++|||
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~~--~~l-------~~~l~~a~~~~~~~~~~~~~~~~~dlLiiD  171 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTTA--ADL-------LLQLSTAQRQGRYKTTLQRGVMAPRLLIID  171 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeH--HHH-------HHHHHHHHHCCcHHHHHHHHhcCCCEEEEc
Confidence            6889999999999999999887544   3321212111  100       0000000 0000111111  1234799999


Q ss_pred             cCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         130 EVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       130 Eid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                      |++..+  ....+.|+++++...       .+..+|+|||...+.+.+.+
T Consensus       172 dlg~~~~~~~~~~~lf~li~~r~-------~~~s~iiTsn~~~~~w~~~~  214 (259)
T PRK09183        172 EIGYLPFSQEEANLFFQVIAKRY-------EKGSMILTSNLPFGQWDQTF  214 (259)
T ss_pred             ccccCCCChHHHHHHHHHHHHHH-------hcCcEEEecCCCHHHHHHHh
Confidence            998754  456667888887632       33458999999998887765

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.05  E-value=3.7e-09  Score=87.41  Aligned_cols=53  Identities=25%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++||.+|.+.+.-.+.-....+-   .+.++||.||||||||.+|.++|+.|-.
T Consensus        24 ~GlVGQ~~AReAagiiv~mIk~~K~---aGr~iLiaGppGtGKTAlA~~ia~eLG~   76 (398)
T PF06068_consen   24 DGLVGQEKAREAAGIIVDMIKEGKI---AGRAILIAGPPGTGKTALAMAIAKELGE   76 (398)
T ss_dssp             TTEES-HHHHHHHHHHHHHHHTT-----TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred             ccccChHHHHHHHHHHHHHHhcccc---cCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence            5799999998887666655433321   2347999999999999999999999753

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK05642 DNA replication initiation factor; Validated

Probab=99.04  E-value=4.1e-10  Score=89.14  Aligned_cols=98  Identities=10%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+||+|+|||||++++++++..   .+....|+.  ...+       .. .    ...+.+.+..  .++++|||++
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~--~~~~-------~~-~----~~~~~~~~~~--~d~LiiDDi~  107 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLP--LAEL-------LD-R----GPELLDNLEQ--YELVCLDDLD  107 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEee--HHHH-------Hh-h----hHHHHHhhhh--CCEEEEechh
Confidence            5799999999999999999988654   221111211  1111       00 0    1112222332  3689999998


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      ....  ..+..|+.+++...      .++..+|+||+..+..+..
T Consensus       108 ~~~~~~~~~~~Lf~l~n~~~------~~g~~ilits~~~p~~l~~  146 (234)
T PRK05642        108 VIAGKADWEEALFHLFNRLR------DSGRRLLLAASKSPRELPI  146 (234)
T ss_pred             hhcCChHHHHHHHHHHHHHH------hcCCEEEEeCCCCHHHcCc
Confidence            7753  44566777776422      1356788889888765543

>smart00350 MCM minichromosome maintenance proteins

Probab=99.03  E-value=1.2e-09  Score=95.71  Aligned_cols=145  Identities=15%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc----cCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN----RYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV   88 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~----~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~   88 (202)
                      ++.|.+.+...++|++.++..+.-++......    ....+...++||+|+||||||.+|+++++....   .    .+.
T Consensus       194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r---~----~~~  266 (509)
T smart00350      194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR---A----VYT  266 (509)
T ss_pred             HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc---c----eEc
Confidence            35566777788999999888777666543211    000112337999999999999999999997533   1    111


Q ss_pred             hh---hcccccCCC-Cc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc---ccc---cC
Q psy1695          89 HK---FNSRIHFPN-EN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SF  157 (202)
Q Consensus        89 ~~---~~~~~~~~~-~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~---~~~---~~  157 (202)
                      ..   ....+.... .. ..+.+.     .-.+.+..+..++++|||++++++..+..|+++|+++.++   .+.   -.
T Consensus       267 ~~~~~~~~~l~~~~~~~~~~g~~~-----~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~  341 (509)
T smart00350      267 TGKGSSAVGLTAAVTRDPETREFT-----LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN  341 (509)
T ss_pred             CCCCCCcCCccccceEccCcceEE-----ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence            10   011110000 00 000000     0012233445689999999999999999999999987643   121   22


Q ss_pred             CceEEEEeeCcC
Q psy1695         158 QNTIFLFLSNSG  169 (202)
Q Consensus       158 ~~~~~Iltsn~~  169 (202)
                      .++.+|.++|..
T Consensus       342 ~~~~viAa~NP~  353 (509)
T smart00350      342 ARCSVLAAANPI  353 (509)
T ss_pred             CCcEEEEEeCCC
Confidence            466788888864

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.03  E-value=4.6e-10  Score=95.71  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      ++..++|.....  ...++......+.  ..+..++|+||+|+|||++++++++++..   ......++.+....+..  
T Consensus       109 fd~fi~g~~n~~--a~~~~~~~~~~~~--~~~n~l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~~~~~~~--  179 (405)
T TIGR00362       109 FDNFVVGKSNRL--AHAAALAVAENPG--KAYNPLFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVSSEKFTN--  179 (405)
T ss_pred             ccccccCCcHHH--HHHHHHHHHhCcC--ccCCeEEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEEHHHHHH--
Confidence            444577765432  2233344333322  12335899999999999999999999765   21011111111111100  


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                       .........-...+.+.+..  .++++|||++.+..  ..+..|+.+++.-.      ..+..+|+|||..++.+..
T Consensus       180 -~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~------~~~~~iiits~~~p~~l~~  248 (405)
T TIGR00362       180 -DFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNALH------ENGKQIVLTSDRPPKELPG  248 (405)
T ss_pred             -HHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHH------HCCCCEEEecCCCHHHHhh
Confidence             00000000001112222222  47999999998764  35666776665421      0345578899988776654

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.03  E-value=2.3e-09  Score=92.39  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          18 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        18 ~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ..++..++|....  ....++......+.  ....+++|+|++|+|||+|++++++++.... .+  ..++.+....+  
T Consensus       112 ~tFdnFv~g~~n~--~A~~aa~~~a~~~~--~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~--~~v~yv~~~~f--  182 (450)
T PRK14087        112 NTFENFVIGSSNE--QAFIAVQTVSKNPG--ISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SD--LKVSYMSGDEF--  182 (450)
T ss_pred             cchhcccCCCcHH--HHHHHHHHHHhCcC--cccCceEEECCCCCcHHHHHHHHHHHHHHhC-CC--CeEEEEEHHHH--
Confidence            3556678886542  22234444433322  1112479999999999999999999875410 11  11111111110  


Q ss_pred             CCCchhHHHHHHhH---HHHHHhhh-hCCceEEEEecCCCCC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          98 PNENHVSLYRLQLT---NWIISNVT-ACDRAIFIFDEVDKFP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        98 ~~~~~~~~~~~~l~---~~~~~~l~-~~~~~viiiDEid~~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                           ...+...+.   +.+.+... -...++++|||++.+.  ...++.|+.++..-.      .++..+|+|||..++
T Consensus       183 -----~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~------~~~k~iIltsd~~P~  251 (450)
T PRK14087        183 -----ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI------ENDKQLFFSSDKSPE  251 (450)
T ss_pred             -----HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHH------HcCCcEEEECCCCHH
Confidence                 010111011   11111111 1234799999999887  456777777776532      033467899999887


Q ss_pred             HHH
Q psy1695         172 EIM  174 (202)
Q Consensus       172 ~i~  174 (202)
                      .+.
T Consensus       252 ~l~  254 (450)
T PRK14087        252 LLN  254 (450)
T ss_pred             HHh
Confidence            664

>PRK04132 replication factor C small subunit; Provisional

Probab=99.02  E-value=1.1e-09  Score=99.78  Aligned_cols=101  Identities=11%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             EEEEec--CCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh-----CCceE
Q psy1695          53 AISLHG--LPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-----CDRAI  125 (202)
Q Consensus        53 ~~ll~G--p~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-----~~~~v  125 (202)
                      +-+..|  |++.|||++|+++|+.++.   .+...+++.++.++.     ..+.    .+...+.+....     .++.|
T Consensus       566 ~~~~~G~lPh~lGKTT~A~ala~~l~g---~~~~~~~lElNASd~-----rgid----~IR~iIk~~a~~~~~~~~~~KV  633 (846)
T PRK04132        566 HNFIGGNLPTVLHNTTAALALARELFG---ENWRHNFLELNASDE-----RGIN----VIREKVKEFARTKPIGGASFKI  633 (846)
T ss_pred             hhhhcCCCCCcccHHHHHHHHHHhhhc---ccccCeEEEEeCCCc-----ccHH----HHHHHHHHHHhcCCcCCCCCEE
Confidence            356778  9999999999999999876   333334555554431     1122    122222222211     23579


Q ss_pred             EEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         126 FIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       126 iiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                      +||||+|+|+.++|+.|+++||+++       .++.||++||.....
T Consensus       634 vIIDEaD~Lt~~AQnALLk~lEep~-------~~~~FILi~N~~~kI  673 (846)
T PRK04132        634 IFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSKI  673 (846)
T ss_pred             EEEECcccCCHHHHHHHHHHhhCCC-------CCeEEEEEeCChhhC
Confidence            9999999999999999999999977       899999999987544

>KOG0652|consensus

Probab=99.00  E-value=3.4e-09  Score=83.75  Aligned_cols=132  Identities=13%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++=|-+..++.+.+++---+.++.     +.+.|.++++|||||||||.+|++.|.....        .|+....+.+..
T Consensus       172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--------TFLKLAgPQLVQ  243 (424)
T KOG0652|consen  172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--------TFLKLAGPQLVQ  243 (424)
T ss_pred             ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--------hHHHhcchHHHh
Confidence            466778888888887743221111     1345668999999999999999999887422        343333222211


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccc-cCCceEEEEe
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQI-SFQNTIFLFL  165 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~-~~~~~~~Ilt  165 (202)
                         -+++ -...+.+............||||||+|...           .++|..++.++..   .++. +...+-+|..
T Consensus       244 ---MfIG-dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ---LDGFss~~~vKviAA  316 (424)
T KOG0652|consen  244 ---MFIG-DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ---LDGFSSDDRVKVIAA  316 (424)
T ss_pred             ---hhhc-chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh---hcCCCCccceEEEee
Confidence               1111 011112222222233445899999996552           3577777777654   2232 3356667777


Q ss_pred             eCcC
Q psy1695         166 SNSG  169 (202)
Q Consensus       166 sn~~  169 (202)
                      ||.-
T Consensus       317 TNRv  320 (424)
T KOG0652|consen  317 TNRV  320 (424)
T ss_pred             cccc
Confidence            7764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.99  E-value=3e-09  Score=75.89  Aligned_cols=108  Identities=12%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC-------------CCCchhHHHHHHhHHHHHHhhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-------------PNENHVSLYRLQLTNWIISNVT  119 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~l~  119 (202)
                      .++|+||||||||++++.++..+..   ..  ..++.+.......             ....... ..  ..........
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~   75 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELGP---PG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG-EL--RLRLALALAR   75 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccCC---CC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCH-HH--HHHHHHHHHH
Confidence            6899999999999999999999766   21  0122221111100             0000111 11  1223333344


Q ss_pred             hCCceEEEEecCCCCChhHHHHHHHhcccC-cccccccCCceEEEEeeCc
Q psy1695         120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDHH-AVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       120 ~~~~~viiiDEid~~~~~~~~~L~~~le~~-~~~~~~~~~~~~~Iltsn~  168 (202)
                      ..+..++++||++.+............... .........+..+|+++|.
T Consensus        76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            444589999999999886655543321000 0000012267788899985

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.99  E-value=3e-09  Score=96.23  Aligned_cols=140  Identities=15%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCc-cchhhhhccccc--
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGT-SRFVHKFNSRIH--   96 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~-~~~~~~~~~~~~--   96 (202)
                      .+.+.|++.-++.+..++...+.+..   ...+++++|+||||||.+++.+.+.|..... .+.. ..++.+++..+.  
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgsg---pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp  830 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQSG---SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP  830 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcCC---CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence            35799999999999999998876432   1224679999999999999999988753100 1100 112223221111  


Q ss_pred             ------------CCCC-chhHHHHHHhHHHHHHhhhh--CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceE
Q psy1695          97 ------------FPNE-NHVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTI  161 (202)
Q Consensus        97 ------------~~~~-~~~~~~~~~l~~~~~~~l~~--~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~  161 (202)
                                  ...+ .....+ + ....+...+..  ....||||||+|.+....++.|+.+++...    ......+
T Consensus       831 ~sIYqvI~qqL~g~~P~~GlsS~-e-vLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~----~s~SKLi  904 (1164)
T PTZ00112        831 NAAYQVLYKQLFNKKPPNALNSF-K-ILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT----KINSKLV  904 (1164)
T ss_pred             HHHHHHHHHHHcCCCCCccccHH-H-HHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh----ccCCeEE
Confidence                        1111 111001 1 12222222211  123689999999998877788888877532    1225688


Q ss_pred             EEEeeCcC
Q psy1695         162 FLFLSNSG  169 (202)
Q Consensus       162 ~Iltsn~~  169 (202)
                      +|.+||..
T Consensus       905 LIGISNdl  912 (1164)
T PTZ00112        905 LIAISNTM  912 (1164)
T ss_pred             EEEecCch
Confidence            89999854

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.99  E-value=9.7e-09  Score=80.75  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      +.++|-+..++.+.+...+++.+.    .+.++|++|+.|||||++++++......   .|.  .++.+....+      
T Consensus        27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~---~GL--RlIev~k~~L------   91 (249)
T PF05673_consen   27 DDLIGIERQKEALIENTEQFLQGL----PANNVLLWGARGTGKSSLVKALLNEYAD---QGL--RLIEVSKEDL------   91 (249)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhh---cCc--eEEEECHHHh------
Confidence            369999999999999999998763    2346999999999999999999998665   432  1222211111      


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCc-eEEEEecCCCCC-hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVTACDR-AIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~-~viiiDEid~~~-~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                        .   .  ...+.+.+...|. -||++|+..--. ......|..+||.+-   ...-.|+++..|||..
T Consensus        92 --~---~--l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl---e~~P~NvliyATSNRR  151 (249)
T PF05673_consen   92 --G---D--LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL---EARPDNVLIYATSNRR  151 (249)
T ss_pred             --c---c--HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc---ccCCCcEEEEEecchh
Confidence              1   0  2234444554544 788899974322 234566777777542   0122799999999963

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.98  E-value=1.1e-09  Score=94.48  Aligned_cols=109  Identities=11%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+||+|+|||++++++++.+..   ......++.+....+..   .............+.+.+.  ..++++|||++
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~  221 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTSEKFTN---DFVNALRNNTMEEFKEKYR--SVDVLLIDDIQ  221 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEHHHHHH---HHHHHHHcCcHHHHHHHHh--cCCEEEEehhh
Confidence            5899999999999999999999765   21011111111111100   0000000000111222222  25799999999


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .+..  ..+..|+.+++...     + ++..+|+|||..+..+..
T Consensus       222 ~l~~~~~~~~~l~~~~n~l~-----~-~~~~iiits~~~p~~l~~  260 (450)
T PRK00149        222 FLAGKERTQEEFFHTFNALH-----E-AGKQIVLTSDRPPKELPG  260 (450)
T ss_pred             hhcCCHHHHHHHHHHHHHHH-----H-CCCcEEEECCCCHHHHHH
Confidence            8754  34566666665421     0 234578899988776544

>KOG0743|consensus

Probab=98.97  E-value=3.8e-09  Score=88.85  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh-CCceEEEEecC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA-CDRAIFIFDEV  131 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~viiiDEi  131 (202)
                      ++||+||||||||++..|+|++|.-        ++....++..        . .    ...+...+.. .+.+||+|++|
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~y--------dIydLeLt~v--------~-~----n~dLr~LL~~t~~kSIivIEDI  295 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNY--------DIYDLELTEV--------K-L----DSDLRHLLLATPNKSILLIEDI  295 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCC--------ceEEeeeccc--------c-C----cHHHHHHHHhCCCCcEEEEeec
Confidence            7999999999999999999999633        1222222211        1 0    1113333333 34589999999


Q ss_pred             CCCCh------------------hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhH
Q psy1695         132 DKFPK------------------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECI  186 (202)
Q Consensus       132 d~~~~------------------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~  186 (202)
                      |-.-.                  -.+..|+..+|.-.   ...-..-|+|||||--...    ...+.|.||-
T Consensus       296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw---Sscg~ERIivFTTNh~EkL----DPALlRpGRm  361 (457)
T KOG0743|consen  296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW---SSCGDERIIVFTTNHKEKL----DPALLRPGRM  361 (457)
T ss_pred             ccccccccccccccccccCCcceeehHHhhhhhcccc---ccCCCceEEEEecCChhhc----CHhhcCCCcc
Confidence            65511                  23455666666422   1111467899999976541    1224666654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.97  E-value=4e-09  Score=90.73  Aligned_cols=107  Identities=13%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      +++|+||+|+|||+|++++++.+..   .+...-|+..  ..+..   .....+.......+....  ...++++|||++
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~--~~f~~---~~~~~l~~~~~~~f~~~~--~~~dvLiIDDiq  212 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS--ELFTE---HLVSAIRSGEMQRFRQFY--RNVDALFIEDIE  212 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH--HHHHH---HHHHHHhcchHHHHHHHc--ccCCEEEEcchh
Confidence            5899999999999999999999765   2211111111  10000   000000000001111111  234799999999


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .+..  ..++.|+.++..-.      ..+..+|+|||..+..+..
T Consensus       213 ~l~~k~~~qeelf~l~N~l~------~~~k~IIlts~~~p~~l~~  251 (445)
T PRK12422        213 VFSGKGATQEEFFHTFNSLH------TEGKLIVISSTCAPQDLKA  251 (445)
T ss_pred             hhcCChhhHHHHHHHHHHHH------HCCCcEEEecCCCHHHHhh
Confidence            9864  45666776655321      0345788999998877654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.97  E-value=2.8e-09  Score=76.29  Aligned_cols=106  Identities=13%  Similarity=0.301  Sum_probs=64.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccc----cCc-C---------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRY----KDK-G---------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNV  118 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~----~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  118 (202)
                      .++++||+|+|||++++.+++.+....    +.. .         ...+.......+..+.....  ....+.+.+...+
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~~~~l   83 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQ--TSDELRSLLIDAL   83 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS---HHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccC--CHHHHHHHHHHHH
Confidence            689999999999999999999864300    000 0         00111111111111111101  1223345666667


Q ss_pred             hhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         119 TACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       119 ~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ......+|+|||+|.+ +....+.|..++++         .+..+|++.+..
T Consensus        84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~---------~~~~vvl~G~~~  126 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNE---------SNIKVVLVGTPE  126 (131)
T ss_dssp             HHCTEEEEEEETTHHHHTHHHHHHHHHHTCS---------CBEEEEEEESST
T ss_pred             HhcCCeEEEEeChHhcCCHHHHHHHHHHHhC---------CCCeEEEEEChh
Confidence            7776679999999999 99999999888884         667777777654

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.96  E-value=1.8e-09  Score=93.69  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-cCc-cchhhhhc-----ccc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-KGT-SRFVHKFN-----SRI   95 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-~~~-~~~~~~~~-----~~~   95 (202)
                      .++||..+++.+.-++    .      ...+++|.||+|+|||++++.++..+.+.... ... ..+..+..     ..+
T Consensus       192 ~v~Gq~~~~~al~laa----~------~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~  261 (506)
T PRK09862        192 DVIGQEQGKRGLEITA----A------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW  261 (506)
T ss_pred             EEECcHHHHhhhheec----c------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCc
Confidence            4678876665543222    1      22379999999999999999999886542110 000 00100000     000


Q ss_pred             ---cCCCCc-hhHHHHHHhHH---HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---cc---cCCceEE
Q psy1695          96 ---HFPNEN-HVSLYRLQLTN---WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---QI---SFQNTIF  162 (202)
Q Consensus        96 ---~~~~~~-~~~~~~~~l~~---~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~~---~~~~~~~  162 (202)
                         .+..+. .++ ....+.+   .-.+.+..+..+++++||++.+++.+++.|++.||++.++.   +.   --.+..+
T Consensus       262 ~~rPfr~ph~~~s-~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~l  340 (506)
T PRK09862        262 RQRPFRSPHHSAS-LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQL  340 (506)
T ss_pred             CCCCccCCCccch-HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEE
Confidence               000010 111 0000010   11234556667999999999999999999999999987631   11   2356788


Q ss_pred             EEeeCcCh-------------HHHHHHHHHHHHhhhHHHHhccc
Q psy1695         163 LFLSNSGG-------------TEIMNTFLELRKSECIEFIFQCQ  193 (202)
Q Consensus       163 Iltsn~~~-------------~~i~~~~~~~~~~~~~r~~~~~~  193 (202)
                      |.++|..+             +.+..+...+.....+||++++.
T Consensus       341 IAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~  384 (506)
T PRK09862        341 VAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLE  384 (506)
T ss_pred             EEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEE
Confidence            89999753             23444455566677778887654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.95  E-value=3e-09  Score=93.75  Aligned_cols=109  Identities=12%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+|++|+|||+|+.++++++.... .+....|+..  ..+..   .+...........+.+.+.  ..++|+|||++
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita--eef~~---el~~al~~~~~~~f~~~y~--~~DLLlIDDIq  387 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS--EEFTN---EFINSIRDGKGDSFRRRYR--EMDILLVDDIQ  387 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH--HHHHH---HHHHHHHhccHHHHHHHhh--cCCEEEEehhc
Confidence            479999999999999999999975310 0111111111  11000   0000000000111222222  24899999999


Q ss_pred             CCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .+..  ..+..|+.+++.-.      .++..+|+|||...+.+..
T Consensus       388 ~l~gke~tqeeLF~l~N~l~------e~gk~IIITSd~~P~eL~~  426 (617)
T PRK14086        388 FLEDKESTQEEFFHTFNTLH------NANKQIVLSSDRPPKQLVT  426 (617)
T ss_pred             cccCCHHHHHHHHHHHHHHH------hcCCCEEEecCCChHhhhh
Confidence            8854  34566766666532      1345677899998877643

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.95  E-value=6.5e-09  Score=89.75  Aligned_cols=132  Identities=13%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|+..+...+.+.+........      .+++.|++||||+++|+++......   .  ..+++.+++..+...   .
T Consensus       144 ~ii~~S~~~~~~~~~~~~~a~~~~------~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~~~i~c~~~~~~---~  209 (457)
T PRK11361        144 HILTNSPAMMDICKDTAKIALSQA------SVLISGESGTGKELIARAIHYNSRR---A--KGPFIKVNCAALPES---L  209 (457)
T ss_pred             ceecccHHHhHHHHHHHHHcCCCc------EEEEEcCCCccHHHHHHHHHHhCCC---C--CCCeEEEECCCCCHH---H
Confidence            367777777777666666544322      6899999999999999999876432   1  345555555433110   0


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn  167 (202)
                         ....+.+           .-.+.+.....++++|||++.+++..|..|+++++++.+.. +   .-..++.+|++||
T Consensus       210 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~  286 (457)
T PRK11361        210 ---LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN  286 (457)
T ss_pred             ---HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCC
Confidence               0000000           00112333445899999999999999999999999875432 1   1123578899998


Q ss_pred             cChH
Q psy1695         168 SGGT  171 (202)
Q Consensus       168 ~~~~  171 (202)
                      ...+
T Consensus       287 ~~l~  290 (457)
T PRK11361        287 RDLQ  290 (457)
T ss_pred             CCHH
Confidence            7654

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.94  E-value=6.9e-09  Score=89.36  Aligned_cols=133  Identities=14%  Similarity=0.207  Sum_probs=85.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|...+++.+...+......      ...++++|++||||+++|+++......   .  ..+++.+++..+...   .
T Consensus       140 ~lig~s~~~~~l~~~i~~~a~~------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~--~~~~v~v~c~~~~~~---~  205 (445)
T TIGR02915       140 GLITSSPGMQKICRTIEKIAPS------DITVLLLGESGTGKEVLARALHQLSDR---K--DKRFVAINCAAIPEN---L  205 (445)
T ss_pred             ceeecCHHHHHHHHHHHHHhCC------CCCEEEECCCCcCHHHHHHHHHHhCCc---C--CCCeEEEECCCCChH---H
Confidence            4788888888887777654322      225789999999999999999887432   1  345666655443110   0


Q ss_pred             hHHHHHHhH-----------HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLT-----------NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~-----------~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn  167 (202)
                         ....+.           ....+.+.....++++|||++.++...|..|+++++++.+.. +   ..-.++.+|++|+
T Consensus       206 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~  282 (445)
T TIGR02915       206 ---LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATN  282 (445)
T ss_pred             ---HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecC
Confidence               000000           000112333456899999999999999999999999876431 1   1123678899998


Q ss_pred             cChHH
Q psy1695         168 SGGTE  172 (202)
Q Consensus       168 ~~~~~  172 (202)
                      ...+.
T Consensus       283 ~~l~~  287 (445)
T TIGR02915       283 QDLKR  287 (445)
T ss_pred             CCHHH
Confidence            77543

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.93  E-value=3.9e-10  Score=88.36  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHh----HHHHHHhhhhCCceEEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL----TNWIISNVTACDRAIFIF  128 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~l~~~~~~viii  128 (202)
                      .++++||+|+|||||..++++++....+.   ..++.+....+       ...+...+    ...+.+.+.  ..++++|
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~---~~v~y~~~~~f-------~~~~~~~~~~~~~~~~~~~~~--~~DlL~i  103 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPG---KRVVYLSAEEF-------IREFADALRDGEIEEFKDRLR--SADLLII  103 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTT---S-EEEEEHHHH-------HHHHHHHHHTTSHHHHHHHHC--TSSEEEE
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhcccc---ccceeecHHHH-------HHHHHHHHHcccchhhhhhhh--cCCEEEE
Confidence            47899999999999999999987641111   11111111000       00011000    111222222  3589999


Q ss_pred             ecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695         129 DEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  174 (202)
Q Consensus       129 DEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~  174 (202)
                      |+++.+...  .+..|+.+++.-.      .++..+|+||+..+..+.
T Consensus       104 DDi~~l~~~~~~q~~lf~l~n~~~------~~~k~li~ts~~~P~~l~  145 (219)
T PF00308_consen  104 DDIQFLAGKQRTQEELFHLFNRLI------ESGKQLILTSDRPPSELS  145 (219)
T ss_dssp             ETGGGGTTHHHHHHHHHHHHHHHH------HTTSEEEEEESS-TTTTT
T ss_pred             ecchhhcCchHHHHHHHHHHHHHH------hhCCeEEEEeCCCCcccc
Confidence            999998764  4778888777632      145578899988776654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK15115 response regulator GlrR; Provisional

Probab=98.92  E-value=1e-08  Score=88.29  Aligned_cols=132  Identities=11%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|...++..+.+.+......      ...+++.|++||||+++|+++.+....   .  ..+++.+++..+...   .
T Consensus       135 ~lig~s~~~~~~~~~~~~~a~~------~~~vli~Ge~GtGk~~lA~~ih~~s~r---~--~~~f~~i~c~~~~~~---~  200 (444)
T PRK15115        135 AIVTRSPLMLRLLEQARMVAQS------DVSVLINGQSGTGKEILAQAIHNASPR---A--SKPFIAINCGALPEQ---L  200 (444)
T ss_pred             cccccCHHHHHHHHHHHhhccC------CCeEEEEcCCcchHHHHHHHHHHhcCC---C--CCCeEEEeCCCCCHH---H
Confidence            3566665555555555443322      225789999999999999999887432   1  235666655443110   0


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn  167 (202)
                         ....+.+           ...+.+.....++++|||++.+++..|..|+++++++.+...    ....++.+|++|+
T Consensus       201 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~  277 (444)
T PRK15115        201 ---LESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH  277 (444)
T ss_pred             ---HHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence               0000000           000122334457899999999999999999999998764321    1223678899888


Q ss_pred             cChH
Q psy1695         168 SGGT  171 (202)
Q Consensus       168 ~~~~  171 (202)
                      ....
T Consensus       278 ~~l~  281 (444)
T PRK15115        278 RDLP  281 (444)
T ss_pred             CCHH
Confidence            6543

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.91  E-value=4.3e-09  Score=73.25  Aligned_cols=95  Identities=18%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK  133 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~  133 (202)
                      +.|+||||+|||++|..|++.+...........++.      ..+...+...|.              ...++++||+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~------~~~~~~~w~gY~--------------~q~vvi~DD~~~   60 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT------RNPGDKFWDGYQ--------------GQPVVIIDDFGQ   60 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe------CCCccchhhccC--------------CCcEEEEeecCc
Confidence            468999999999999999999765100000000000      000111111111              247999999977


Q ss_pred             CChh----HHHHHHHhcccCccccc--------ccCCceEEEEeeCc
Q psy1695         134 FPKG----LLDVIIPFIDHHAVYNQ--------ISFQNTIFLFLSNS  168 (202)
Q Consensus       134 ~~~~----~~~~L~~~le~~~~~~~--------~~~~~~~~Iltsn~  168 (202)
                      ....    ....++++++..++.-.        ..+...++|+|||.
T Consensus        61 ~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~  107 (107)
T PF00910_consen   61 DNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF  107 (107)
T ss_pred             cccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence            7754    67778888888765321        34556788889883

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=8.8e-09  Score=92.61  Aligned_cols=128  Identities=15%  Similarity=0.196  Sum_probs=85.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCc-CccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDK-GTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~  100 (202)
                      -++|.+..++.+.+.+.+...++     |   +|+|+||||||.++..+|..+... .+.. .....+..+++.+.- -.
T Consensus       171 PvIGRd~EI~r~iqIL~RR~KNN-----P---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA-Ga  241 (786)
T COG0542         171 PVIGRDEEIRRTIQILSRRTKNN-----P---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA-GA  241 (786)
T ss_pred             CCcChHHHHHHHHHHHhccCCCC-----C---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-cc
Confidence            49999999999999998876553     3   789999999999999999997651 0111 022333334433321 12


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+-|.+.+.+..- .+.+...+..|+||||++.+         ..++.|.|.+.|..|.         ..+|-+|++.
T Consensus       242 kyRGeFEeRlk~v-l~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe---------L~~IGATT~~  309 (786)
T COG0542         242 KYRGEFEERLKAV-LKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE---------LRCIGATTLD  309 (786)
T ss_pred             cccCcHHHHHHHH-HHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC---------eEEEEeccHH
Confidence            3444455554443 34466666789999999654         2458899999999975         4455555544

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.90  E-value=5.8e-09  Score=95.03  Aligned_cols=149  Identities=15%  Similarity=0.036  Sum_probs=88.4

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc-------c------CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQN-------R------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY   79 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~-------~------~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~   79 (202)
                      ++.|.+.+-..|+|++.+++.+.-++......       +      ...+...++||+|+||||||.+|+++++....  
T Consensus       441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR--  518 (915)
T PTZ00111        441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR--  518 (915)
T ss_pred             HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc--
Confidence            35556667778999999999887777553211       0      00112337999999999999999999986332  


Q ss_pred             cCcC--ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c
Q psy1695          80 KDKG--TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q  154 (202)
Q Consensus        80 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~  154 (202)
                       ...  ...+..+.+...........+.+.     .-.+++..+..++++|||+++|++..+..|+++|+.+.++-   |
T Consensus       519 -~~ytsG~~~s~vgLTa~~~~~d~~tG~~~-----le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaG  592 (915)
T PTZ00111        519 -SIYTSGKSSSSVGLTASIKFNESDNGRAM-----IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG  592 (915)
T ss_pred             -cccCCCCCCccccccchhhhcccccCccc-----ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCC
Confidence             100  011121111110000000000000     00123444556899999999999999999999999876421   1


Q ss_pred             c---cCCceEEEEeeCcC
Q psy1695         155 I---SFQNTIFLFLSNSG  169 (202)
Q Consensus       155 ~---~~~~~~~Iltsn~~  169 (202)
                      .   -..++.+|.++|..
T Consensus       593 i~~tL~ar~rVIAAaNP~  610 (915)
T PTZ00111        593 IVATLKAETAILASCNPI  610 (915)
T ss_pred             cceecCCCeEEEEEcCCc
Confidence            1   22466777777763

>KOG0732|consensus

Probab=98.88  E-value=7.8e-09  Score=94.92  Aligned_cols=148  Identities=18%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      .+=|.+..+..+.+.+..-+.++.     +...|.+++|+||||||||..|+++|..+...      ..-+.+++..-..
T Consensus       266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~------~~kisffmrkgaD  339 (1080)
T KOG0732|consen  266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG------NRKISFFMRKGAD  339 (1080)
T ss_pred             ccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc------ccccchhhhcCch
Confidence            456667777777776655433322     13456689999999999999999999985441      1111122211111


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      -....++....+ ...+.+..+.+...|+++||||=+.           ..+...|+.+|+.-.     ...++++|-+|
T Consensus       340 ~lskwvgEaERq-lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-----sRgqVvvigAT  413 (1080)
T KOG0732|consen  340 CLSKWVGEAERQ-LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-----SRGQVVVIGAT  413 (1080)
T ss_pred             hhccccCcHHHH-HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-----CCCceEEEccc
Confidence            112223312222 3344455555666899999998333           356777888887532     33678888888


Q ss_pred             CcChHHHHHHHHHHHHhhhH
Q psy1695         167 NSGGTEIMNTFLELRKSECI  186 (202)
Q Consensus       167 n~~~~~i~~~~~~~~~~~~~  186 (202)
                      |.....    ...+++.||.
T Consensus       414 nRpda~----dpaLRRPgrf  429 (1080)
T KOG0732|consen  414 NRPDAI----DPALRRPGRF  429 (1080)
T ss_pred             CCcccc----chhhcCCccc
Confidence            876532    1224566665

>PRK06620 hypothetical protein; Validated

Probab=98.88  E-value=1e-08  Score=80.11  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|+||+|+||||+++++++.
T Consensus        46 ~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         46 TLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998776

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.86  E-value=1.7e-08  Score=87.41  Aligned_cols=133  Identities=12%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC-----
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP-----   98 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-----   98 (202)
                      ++|...+...+.+.+.....      .+..+++.|++||||+++|+++......   .  ..+++.+++..+...     
T Consensus       136 lig~s~~~~~v~~~i~~~a~------~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~--~~~~~~~~c~~~~~~~~~~~  204 (463)
T TIGR01818       136 LIGEAPAMQEVFRAIGRLSR------SDITVLINGESGTGKELVARALHRHSPR---A--NGPFIALNMAAIPKDLIESE  204 (463)
T ss_pred             eeecCHHHHHHHHHHHHHhC------cCCeEEEECCCCCCHHHHHHHHHHhCCC---C--CCCeEEEeCCCCCHHHHHHH
Confidence            66777777777666655332      3346899999999999999999887432   1  345665555433110     


Q ss_pred             ----CCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695          99 ----NEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  169 (202)
Q Consensus        99 ----~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~  169 (202)
                          ..+ +.+ .    .....+.+..+..+.++|||++.++...|..|+++++++.+...    ....++.+|++|+..
T Consensus       205 lfg~~~~~~~~-~----~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~  279 (463)
T TIGR01818       205 LFGHEKGAFTG-A----NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN  279 (463)
T ss_pred             hcCCCCCCCCC-c----ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence                000 000 0    00001113334457899999999999999999999998765321    122366789999877


Q ss_pred             hHH
Q psy1695         170 GTE  172 (202)
Q Consensus       170 ~~~  172 (202)
                      .+.
T Consensus       280 l~~  282 (463)
T TIGR01818       280 LEA  282 (463)
T ss_pred             HHH
Confidence            654

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>KOG0740|consensus

Probab=98.81  E-value=2.5e-08  Score=84.23  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=62.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ..+.|.+.++..+..++.--...+.    .+..+.++|+.||||+|||.+++++|.+...        .|..+..+.+..
T Consensus       153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a--------tff~iSassLts  224 (428)
T KOG0740|consen  153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA--------TFFNISASSLTS  224 (428)
T ss_pred             cCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcc--------eEeeccHHHhhh
Confidence            3577888888888777754221110    0112336999999999999999999998432        333333333333


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF  134 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~  134 (202)
                      .+.+..    +.+...+....+.....|+||||+|++
T Consensus       225 K~~Ge~----eK~vralf~vAr~~qPsvifidEidsl  257 (428)
T KOG0740|consen  225 KYVGES----EKLVRALFKVARSLQPSVIFIDEIDSL  257 (428)
T ss_pred             hccChH----HHHHHHHHHHHHhcCCeEEEechhHHH
Confidence            333222    334556665555556699999999655

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.80  E-value=4.7e-08  Score=87.08  Aligned_cols=63  Identities=11%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |..+|+...++     +++||+..++.+..++........   ..-.++|+||+|+|||++++.+|+.+..
T Consensus        74 W~eKyrP~~ld-----el~~~~~ki~~l~~~l~~~~~~~~---~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        74 WVEKYKPETQH-----ELAVHKKKIEEVETWLKAQVLENA---PKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             hHHHhCCCCHH-----HhcCcHHHHHHHHHHHHhcccccC---CCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            44445555543     599999999998888776432211   1125899999999999999999998643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.80  E-value=5.8e-09  Score=92.68  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH-HH---HHHhhhhCCceEEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT-NW---IISNVTACDRAIFIF  128 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~l~~~~~~viii  128 (202)
                      +++|.|++|||||++|+++++.+..      ..+|+++..........+.+. ....+. +.   -.+.+..+..+++++
T Consensus        18 ~vLl~G~~GtgKs~lar~l~~~~~~------~~pfv~i~~~~t~d~L~G~id-l~~~~~~g~~~~~~G~L~~A~~GvL~l   90 (589)
T TIGR02031        18 GVAIRARAGTGKTALARALAEILPP------IMPFVELPLGVTEDRLIGGID-VEESLAGGQRVTQPGLLDEAPRGVLYV   90 (589)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhCCc------CCCeEecCcccchhhcccchh-hhhhhhcCcccCCCCCeeeCCCCcEec
Confidence            5999999999999999999998533      123444432100000011110 000000 00   011233344579999


Q ss_pred             ecCCCCChhHHHHHHHhcccCcccc---ccc---CCceEEEEeeCcCh
Q psy1695         129 DEVDKFPKGLLDVIIPFIDHHAVYN---QIS---FQNTIFLFLSNSGG  170 (202)
Q Consensus       129 DEid~~~~~~~~~L~~~le~~~~~~---~~~---~~~~~~Iltsn~~~  170 (202)
                      ||++++++.+++.|+++|+++.++.   +..   -.+..+|.|+|...
T Consensus        91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e  138 (589)
T TIGR02031        91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE  138 (589)
T ss_pred             cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence            9999999999999999999987431   221   13567778888763

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.3e-08  Score=81.56  Aligned_cols=63  Identities=21%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC------CCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY------HNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~------~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ...+=.+|++.++||++|++.+.-|+++.+....      ..-.|..+|+.||+|+|||.+||.+|+..
T Consensus         6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~   74 (444)
T COG1220           6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_pred             HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh
Confidence            4566678999999999999999999987532211      01246689999999999999999999984

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=98.78  E-value=5.9e-08  Score=76.11  Aligned_cols=110  Identities=8%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             ceEEEEecCCC-CcHHHHHHHHHHHhhccc-cCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh----hCCce
Q psy1695          51 ALAISLHGLPG-TGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT----ACDRA  124 (202)
Q Consensus        51 pl~~ll~Gp~G-tGKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~----~~~~~  124 (202)
                      ..+++|.|..+ +||..++..+++.+.+.. ..+.+.++..+....-.......++  .++ .+.+.+.+.    .+++.
T Consensus        15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~--Idq-IReL~~~l~~~p~~g~~K   91 (263)
T PRK06581         15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS--IEQ-IRKLQDFLSKTSAISGYK   91 (263)
T ss_pred             hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc--HHH-HHHHHHHHhhCcccCCcE
Confidence            34799999998 999999999999987720 0011222221110000000011222  111 223333333    34569


Q ss_pred             EEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         125 IFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       125 viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      |++|+++|+|+.++.|.|++.||+++       .+++||++|+...
T Consensus        92 ViII~~ae~mt~~AANALLKtLEEPP-------~~t~fILit~~~~  130 (263)
T PRK06581         92 VAIIYSAELMNLNAANSCLKILEDAP-------KNSYIFLITSRAA  130 (263)
T ss_pred             EEEEechHHhCHHHHHHHHHhhcCCC-------CCeEEEEEeCChh
Confidence            99999999999999999999999998       8999999887643

>PF13173 AAA_14: AAA domain

Probab=98.73  E-value=8.5e-08  Score=68.78  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHH-HhHHHHHHhhhhCCceEEEEecC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRL-QLTNWIISNVTACDRAIFIFDEV  131 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~viiiDEi  131 (202)
                      .++++||.|||||++++.+++.+..      ...++.+++...     .... ... .+...+.+.. .....+++|||+
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~~------~~~~~yi~~~~~-----~~~~-~~~~~~~~~~~~~~-~~~~~~i~iDEi   70 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLLP------PENILYINFDDP-----RDRR-LADPDLLEYFLELI-KPGKKYIFIDEI   70 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcc------cccceeeccCCH-----HHHH-HhhhhhHHHHHHhh-ccCCcEEEEehh
Confidence            6899999999999999999988652      112222222211     0000 000 0111222221 114578999999


Q ss_pred             CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         132 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       132 d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ++++ +....+..+.+.+        .+..+|+|+....
T Consensus        71 q~~~-~~~~~lk~l~d~~--------~~~~ii~tgS~~~  100 (128)
T PF13173_consen   71 QYLP-DWEDALKFLVDNG--------PNIKIILTGSSSS  100 (128)
T ss_pred             hhhc-cHHHHHHHHHHhc--------cCceEEEEccchH
Confidence            9997 5777777777764        3566666665543

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.73  E-value=4.1e-08  Score=82.23  Aligned_cols=149  Identities=13%  Similarity=0.040  Sum_probs=83.5

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-Cc------Cccc-----
Q psy1695          19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DK------GTSR-----   86 (202)
Q Consensus        19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~------~~~~-----   86 (202)
                      .+...++||+..+..+....-    .+    +-.++|+.|+.|+|||+++|+|+..|-.... .|      ...+     
T Consensus        14 ~pf~aivGqd~lk~aL~l~av----~P----~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~   85 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAV----DP----QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCD   85 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhc----cc----ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhH
Confidence            345679999987777643311    11    1115899999999999999999999754110 00      0000     


Q ss_pred             -hhhhh--ccc---------ccCCCCc-----hhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHH
Q psy1695          87 -FVHKF--NSR---------IHFPNEN-----HVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDV  141 (202)
Q Consensus        87 -~~~~~--~~~---------~~~~~~~-----~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~  141 (202)
                       +....  ...         +...+.+     .+|..  ++.+.+        .+.+..+..+|+++||++.++...++.
T Consensus        86 ~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGsl--Di~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~  163 (423)
T COG1239          86 ECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSL--DIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDA  163 (423)
T ss_pred             HHHhhccccccccccceecceecCCCccchhhhcccc--CHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHH
Confidence             00000  000         0000000     11100  011111        122334445999999999999999999


Q ss_pred             HHHhcccCccc---ccccC---CceEEEEeeCcChHHHHHHH
Q psy1695         142 IIPFIDHHAVY---NQISF---QNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       142 L~~~le~~~~~---~~~~~---~~~~~Iltsn~~~~~i~~~~  177 (202)
                      |+.++++|...   +|.+.   .+.++|.|.|.....+-..+
T Consensus       164 LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqL  205 (423)
T COG1239         164 LLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQL  205 (423)
T ss_pred             HHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhh
Confidence            99999998422   34322   35677888888754443333

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.69  E-value=1.1e-07  Score=81.79  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH-----------HHHHhhhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN-----------WIISNVTA  120 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~l~~  120 (202)
                      ..++++|++||||+++|+++......   .  ..+|+.+++..+...   .   ....+.+           ...+.+..
T Consensus       163 ~~vli~ge~g~gk~~~a~~ih~~s~~---~--~~~~i~~~c~~~~~~---~---~~~~lfg~~~~~~~~~~~~~~g~~~~  231 (441)
T PRK10365        163 ATVLIHGDSGTGKELVARAIHASSAR---S--EKPLVTLNCAALNES---L---LESELFGHEKGAFTGADKRREGRFVE  231 (441)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHcCCC---C--CCCeeeeeCCCCCHH---H---HHHHhcCCCCCCcCCCCcCCCCceeE
Confidence            35788999999999999999876432   1  345666665433110   0   0000000           00011233


Q ss_pred             CCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcChH
Q psy1695         121 CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       121 ~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~~~  171 (202)
                      ...++++|||++.+++..|..|+++++++.+.. +   ....++.+|++|+....
T Consensus       232 a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~  286 (441)
T PRK10365        232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA  286 (441)
T ss_pred             CCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH
Confidence            445889999999999999999999999876432 1   11225568888877653

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.67  E-value=8.4e-08  Score=80.44  Aligned_cols=113  Identities=15%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  129 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD  129 (202)
                      .|.++.|+||+|+|||+|..++...+....+.  ...|.. ++..++.......+.. .- ...+...+. ....|+.||
T Consensus        61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~HFh~-Fm~~vh~~l~~~~~~~-~~-l~~va~~l~-~~~~lLcfD  134 (362)
T PF03969_consen   61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR--RVHFHE-FMLDVHSRLHQLRGQD-DP-LPQVADELA-KESRLLCFD  134 (362)
T ss_pred             CCceEEEECCCCCchhHHHHHHHHhCCccccc--cccccH-HHHHHHHHHHHHhCCC-cc-HHHHHHHHH-hcCCEEEEe
Confidence            56689999999999999999998886542111  111111 1111110000000000 00 111112222 123699999


Q ss_pred             cCCCCChh---HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         130 EVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       130 Eid~~~~~---~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                      |++--+..   .+..|+..+=+         ..+++|.|||..++.+-+.-
T Consensus       135 EF~V~DiaDAmil~rLf~~l~~---------~gvvlVaTSN~~P~~Ly~~g  176 (362)
T PF03969_consen  135 EFQVTDIADAMILKRLFEALFK---------RGVVLVATSNRPPEDLYKNG  176 (362)
T ss_pred             eeeccchhHHHHHHHHHHHHHH---------CCCEEEecCCCChHHHcCCc
Confidence            99665543   33444444433         67899999999998764443

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.66  E-value=2.1e-07  Score=81.37  Aligned_cols=65  Identities=12%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             ccccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695           5 DKFIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus         5 ~~~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.|+.+|....+.     ++.-+.+-++.+..++........   ....++|+||+|||||++++.||+++..
T Consensus         7 ~~W~~ky~P~~~~-----eLavhkkKv~eV~~wl~~~~~~~~---~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen    7 EPWVEKYAPKTLD-----ELAVHKKKVEEVRSWLEEMFSGSS---PKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CccchhcCCCCHH-----HhhccHHHHHHHHHHHHHHhccCC---CcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3466667776665     366678888888888887654322   2336899999999999999999999744

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.65  E-value=6.4e-08  Score=80.43  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++|++++++.+.+.++....+..  .+...++|+||||+|||++|++|++.+..
T Consensus        51 ~~~~G~~~~i~~lv~~l~~~a~g~~--~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       51 HDFFGMEEAIERFVNYFKSAAQGLE--ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhcCC--CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3799999999999999988765322  12346899999999999999999999744

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.64  E-value=5.6e-07  Score=72.32  Aligned_cols=92  Identities=16%  Similarity=0.301  Sum_probs=51.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC-----------ccchhhhhcccccCCCCchh-HHHHHHhHHHHHHhhhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----------TSRFVHKFNSRIHFPNENHV-SLYRLQLTNWIISNVTA  120 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~  120 (202)
                      .++++||+|+|||++++.+++.+.+   ...           ...+.......+..+..+.. ......+...+......
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~~---~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~  121 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLDQ---ERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA  121 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCC---CCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            5889999999999999999988653   110           00011111111111111110 00111222333333334


Q ss_pred             CCceEEEEecCCCCChhHHHHHHHhcc
Q psy1695         121 CDRAIFIFDEVDKFPKGLLDVIIPFID  147 (202)
Q Consensus       121 ~~~~viiiDEid~~~~~~~~~L~~~le  147 (202)
                      ....+++|||++.+++...+.|..+.+
T Consensus       122 ~~~~vliiDe~~~l~~~~~~~l~~l~~  148 (269)
T TIGR03015       122 GKRALLVVDEAQNLTPELLEELRMLSN  148 (269)
T ss_pred             CCCeEEEEECcccCCHHHHHHHHHHhC
Confidence            555799999999999888887765544

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0730|consensus

Probab=98.62  E-value=8.4e-08  Score=84.02  Aligned_cols=157  Identities=16%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             CCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          24 VHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      +-|-...+..+...+.--+..++     +-+.|.+++++||||+|||.+++++|+....        .+..++.+.+...
T Consensus       186 ~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a--------~~~~i~~peli~k  257 (693)
T KOG0730|consen  186 IGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA--------FLFLINGPELISK  257 (693)
T ss_pred             cchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc--------eeEecccHHHHHh
Confidence            44445555555555544333322     1235667999999999999999999998321        2222333322222


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh----------hHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~----------~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      ..   +.+...+...+.+........+++|||++.+-+          .+...|+.+++.-.     .-.+.++|.++|.
T Consensus       258 ~~---gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----~~~~vivl~atnr  329 (693)
T KOG0730|consen  258 FP---GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----PDAKVIVLAATNR  329 (693)
T ss_pred             cc---cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----CcCcEEEEEecCC
Confidence            22   223333344444444444468999999987764          34556777776522     2267888888877


Q ss_pred             ChHHHHHHHHHHHHhhhHH---------HHhccchhHHHhhc
Q psy1695         169 GGTEIMNTFLELRKSECIE---------FIFQCQPLKVYLKK  201 (202)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~r---------~~~~~~~~~~~~~~  201 (202)
                      ... +...   +++ ||.+         -..+++.|.++.||
T Consensus       330 p~s-ld~a---lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~  366 (693)
T KOG0730|consen  330 PDS-LDPA---LRR-GRFDREVEIGIPGSDGRLDILRVLTKK  366 (693)
T ss_pred             ccc-cChh---hhc-CCCcceeeecCCCchhHHHHHHHHHHh
Confidence            643 2222   233 5543         24455556666655

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.62  E-value=2.7e-07  Score=76.00  Aligned_cols=136  Identities=8%  Similarity=0.084  Sum_probs=89.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCC-
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNE-  100 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-  100 (202)
                      +.++++...++.+....++...-..      .+++.|.+||||-.+|++-...-.+   .  .++|+..+++.+..... 
T Consensus       204 ~~~v~~S~~mk~~v~qA~k~AmlDA------PLLI~GeTGTGKdLlAkaCH~~S~R---~--~~pFlalNCA~lPe~~aE  272 (511)
T COG3283         204 EQIVAVSPKMKHVVEQAQKLAMLDA------PLLITGETGTGKDLLAKACHLASPR---H--SKPFLALNCASLPEDAAE  272 (511)
T ss_pred             HHHhhccHHHHHHHHHHHHhhccCC------CeEEecCCCchHHHHHHHHhhcCcc---c--CCCeeEeecCCCchhHhH
Confidence            3578888888888887777654433      4799999999999999887655222   1  46777777765533210 


Q ss_pred             -chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeCcCh
Q psy1695         101 -NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSNSGG  170 (202)
Q Consensus       101 -~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn~~~  170 (202)
                       ..++ |... ...-.+.+..+..+.+++|||..|++..|..|++++.+|.+.. +   .-+-++.+|.+|...-
T Consensus       273 sElFG-~apg-~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL  345 (511)
T COG3283         273 SELFG-HAPG-DEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL  345 (511)
T ss_pred             HHHhc-CCCC-CCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence             0000 0000 0000122333445788899999999999999999999997643 2   3456788888886553

>PRK09087 hypothetical protein; Validated

Probab=98.59  E-value=1.3e-07  Score=74.50  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=52.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+||+|+||||+++++++....        .++...  .           +    ...+...+.   .++++|||++
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~--~-----------~----~~~~~~~~~---~~~l~iDDi~   97 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN--E-----------I----GSDAANAAA---EGPVLIEDID   97 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH--H-----------c----chHHHHhhh---cCeEEEECCC
Confidence            4799999999999999988876211        111110  0           0    111111111   2589999999


Q ss_pred             CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .... .+..|+.++..-.      .....+|+||+..+..+..
T Consensus        98 ~~~~-~~~~lf~l~n~~~------~~g~~ilits~~~p~~~~~  133 (226)
T PRK09087         98 AGGF-DETGLFHLINSVR------QAGTSLLMTSRLWPSSWNV  133 (226)
T ss_pred             CCCC-CHHHHHHHHHHHH------hCCCeEEEECCCChHHhcc
Confidence            8753 3455666554321      0356688888887765543

>KOG0741|consensus

Probab=98.58  E-value=1.1e-06  Score=75.69  Aligned_cols=106  Identities=16%  Similarity=0.290  Sum_probs=60.6

Q ss_pred             CCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc-cccC-CCCchhHHHHHHhHHHHHHhhhhCCceE
Q psy1695          49 TKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS-RIHF-PNENHVSLYRLQLTNWIISNVTACDRAI  125 (202)
Q Consensus        49 ~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~v  125 (202)
                      +.|+ .++|+||||+|||.||..+|..      .  .-+|+.+..+ .+.+ +.....    .. ...+.+....++-.+
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~------S--~FPFvKiiSpe~miG~sEsaKc----~~-i~k~F~DAYkS~lsi  601 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIALS------S--DFPFVKIISPEDMIGLSESAKC----AH-IKKIFEDAYKSPLSI  601 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHhh------c--CCCeEEEeChHHccCccHHHHH----HH-HHHHHHHhhcCcceE
Confidence            4566 4999999999999999999876      2  2345544322 1111 110000    01 122233334556799


Q ss_pred             EEEecCCCCC----------hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         126 FIFDEVDKFP----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       126 iiiDEid~~~----------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                      +++|+++++-          ..+.+.|+=++.+.+     ...+..+|+.|+...+.
T Consensus       602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p-----pkg~kLli~~TTS~~~v  653 (744)
T KOG0741|consen  602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP-----PKGRKLLIFGTTSRREV  653 (744)
T ss_pred             EEEcchhhhhcccccCchhhHHHHHHHHHHhccCC-----CCCceEEEEecccHHHH
Confidence            9999998762          234555555555543     12456777777665443

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.57  E-value=2.4e-07  Score=76.13  Aligned_cols=66  Identities=27%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI   95 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   95 (202)
                      .+.++||.+|-+..--.++-..++.-   .+.++|+.||||||||.+|.++|+.|-.      +.+|+.+..+.+
T Consensus        38 ~dG~VGQ~~AReAaGvIv~mik~gk~---aGrgiLi~GppgTGKTAlA~gIa~eLG~------dvPF~~isgsEi  103 (450)
T COG1224          38 GDGLVGQEEAREAAGVIVKMIKQGKM---AGRGILIVGPPGTGKTALAMGIARELGE------DVPFVAISGSEI  103 (450)
T ss_pred             CCcccchHHHHHhhhHHHHHHHhCcc---cccEEEEECCCCCcHHHHHHHHHHHhCC------CCCceeecccee
Confidence            35799999998886555544333322   3347999999999999999999999765      456666655544

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.57  E-value=6.5e-07  Score=75.79  Aligned_cols=96  Identities=19%  Similarity=0.280  Sum_probs=62.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH-hhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS-IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV  131 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEi  131 (202)
                      .+++.||+|||||+++.+++.+ ...   .|   .+...         ...+.    .+.....+.+  +.+++|+|||+
T Consensus       211 Nli~lGp~GTGKThla~~l~~~~a~~---sG---~f~T~---------a~Lf~----~L~~~~lg~v--~~~DlLI~DEv  269 (449)
T TIGR02688       211 NLIELGPKGTGKSYIYNNLSPYVILI---SG---GTITV---------AKLFY----NISTRQIGLV--GRWDVVAFDEV  269 (449)
T ss_pred             cEEEECCCCCCHHHHHHHHhHHHHHH---cC---CcCcH---------HHHHH----HHHHHHHhhh--ccCCEEEEEcC
Confidence            6999999999999999998887 222   11   11110         01111    1111111222  23589999999


Q ss_pred             CCCCh----hHHHHHHHhcccCcccccc--cCCceEEEEeeCcC
Q psy1695         132 DKFPK----GLLDVIIPFIDHHAVYNQI--SFQNTIFLFLSNSG  169 (202)
Q Consensus       132 d~~~~----~~~~~L~~~le~~~~~~~~--~~~~~~~Iltsn~~  169 (202)
                      ..++-    +..+.|...|+.|.+..+.  -..++.++|.-|..
T Consensus       270 gylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~  313 (449)
T TIGR02688       270 ATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP  313 (449)
T ss_pred             CCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence            88653    4678888889999887663  34678888988875

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PHA02774 E1; Provisional

Probab=98.53  E-value=1.9e-07  Score=81.66  Aligned_cols=140  Identities=16%  Similarity=0.165  Sum_probs=77.8

Q ss_pred             HHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH
Q psy1695          33 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN  112 (202)
Q Consensus        33 ~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  112 (202)
                      .+..+++.++.+.+   +-..++|+||||||||++|.+|++.+..   ..  -.++  +..       +..  +      
T Consensus       419 ~fl~~lk~~l~~~P---Kknciv~~GPP~TGKS~fa~sL~~~L~G---~v--i~fv--N~~-------s~F--w------  473 (613)
T PHA02774        419 SFLTALKDFLKGIP---KKNCLVIYGPPDTGKSMFCMSLIKFLKG---KV--ISFV--NSK-------SHF--W------  473 (613)
T ss_pred             HHHHHHHHHHhcCC---cccEEEEECCCCCCHHHHHHHHHHHhCC---CE--EEEE--ECc-------ccc--c------
Confidence            44456666664422   2237999999999999999999999754   10  0111  110       000  0      


Q ss_pred             HHHHhhhhCCceEEEEecCCCC-ChhHHHHHHHhcccCcccc------cccCCceEEEEeeCcChHHHHHHH-H------
Q psy1695         113 WIISNVTACDRAIFIFDEVDKF-PKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNSGGTEIMNTF-L------  178 (202)
Q Consensus       113 ~~~~~l~~~~~~viiiDEid~~-~~~~~~~L~~~le~~~~~~------~~~~~~~~~Iltsn~~~~~i~~~~-~------  178 (202)
                        .+.+..  ..+++|||+-.. .......|..+|+..++.-      .+......+|+|||.....-.... |      
T Consensus       474 --Lqpl~d--~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~  549 (613)
T PHA02774        474 --LQPLAD--AKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITV  549 (613)
T ss_pred             --cchhcc--CCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEE
Confidence              111222  368999999322 2334446778888654321      134555778999998754321111 1      


Q ss_pred             -------HHHHhhhHHHHhccchhHHHhhc
Q psy1695         179 -------ELRKSECIEFIFQCQPLKVYLKK  201 (202)
Q Consensus       179 -------~~~~~~~~r~~~~~~~~~~~~~~  201 (202)
                             .+..+|.|.|.+.=..-|+|.++
T Consensus       550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~r  579 (613)
T PHA02774        550 FEFPNPFPLDENGNPVFELTDANWKSFFER  579 (613)
T ss_pred             EECCCCCCcCCCCCEeeeeCchhHHHHHHH
Confidence                   13335555555555555555544

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.52  E-value=2.3e-07  Score=74.74  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      .|++.+.-...+....++++.+......   .  .+++.||+|.|||++|+.+.+.-..+  .-.+..|+.+++..+-+.
T Consensus       181 ~lksgiatrnp~fnrmieqierva~rsr---~--p~ll~gptgagksflarriyelk~ar--hq~sg~fvevncatlrgd  253 (531)
T COG4650         181 FLKSGIATRNPHFNRMIEQIERVAIRSR---A--PILLNGPTGAGKSFLARRIYELKQAR--HQFSGAFVEVNCATLRGD  253 (531)
T ss_pred             HHHhcccccChHHHHHHHHHHHHHhhcc---C--CeEeecCCCcchhHHHHHHHHHHHHH--HhcCCceEEEeeeeecCc
Confidence            3555666667777777777777543321   2  47999999999999999987752221  123567888887766543


Q ss_pred             CCc--hhHHHHHHh---HHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695          99 NEN--HVSLYRLQL---TNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus        99 ~~~--~~~~~~~~l---~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      ..-  ..+.....+   ...-.+.+.....+++++|||..+..+-|..|++.+++.++
T Consensus       254 ~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf  311 (531)
T COG4650         254 TAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRF  311 (531)
T ss_pred             hHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhcc
Confidence            210  011000000   11223345666779999999999999999999999998764

>PRK04296 thymidine kinase; Provisional

Probab=98.48  E-value=1.1e-06  Score=67.32  Aligned_cols=25  Identities=12%  Similarity=-0.116  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||+|+|||+++..++..+..
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~   28 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEE   28 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH
Confidence            5789999999999999888887644

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.47  E-value=2.9e-06  Score=68.87  Aligned_cols=116  Identities=11%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhhh
Q psy1695          14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHKF   91 (202)
Q Consensus        14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~~   91 (202)
                      +++...-.+.+||-..|.+.+ +.+...+..|. ..++.+++++|++|.|||++++.+.+. ++....+.  .-+++.+.
T Consensus        26 eRI~~i~~~rWIgY~~A~~~L-~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~-hp~~~d~~~~~~PVv~vq  102 (302)
T PF05621_consen   26 ERIAYIRADRWIGYPRAKEAL-DRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRL-HPPQSDEDAERIPVVYVQ  102 (302)
T ss_pred             HHHHHHhcCCeecCHHHHHHH-HHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHH-CCCCCCCCCccccEEEEe
Confidence            344444557899999888776 66677676665 445557999999999999999999886 33111110  01111111


Q ss_pred             c--------------ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC
Q psy1695          92 N--------------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF  134 (202)
Q Consensus        92 ~--------------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~  134 (202)
                      +              ..+..+......  ...+...+...+......++||||++.+
T Consensus       103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~--~~~~~~~~~~llr~~~vrmLIIDE~H~l  157 (302)
T PF05621_consen  103 MPPEPDERRFYSAILEALGAPYRPRDR--VAKLEQQVLRLLRRLGVRMLIIDEFHNL  157 (302)
T ss_pred             cCCCCChHHHHHHHHHHhCcccCCCCC--HHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence            1              111111111111  1122344556677777899999999875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.47  E-value=1.2e-06  Score=64.58  Aligned_cols=28  Identities=29%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++-+.++|+||+|||+++..++..|..
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            3456899999999999999999999876

>KOG1969|consensus

Probab=98.47  E-value=7.4e-07  Score=79.09  Aligned_cols=83  Identities=22%  Similarity=0.376  Sum_probs=54.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHh--hh-hCCceEEEEe
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISN--VT-ACDRAIFIFD  129 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~-~~~~~viiiD  129 (202)
                      .+||+||||-|||++|+.+|+.      .|+  .++.++.++     ........+.+...+...  +. ......+|+|
T Consensus       328 ilLL~GppGlGKTTLAHViAkq------aGY--sVvEINASD-----eRt~~~v~~kI~~avq~~s~l~adsrP~CLViD  394 (877)
T KOG1969|consen  328 ILLLCGPPGLGKTTLAHVIAKQ------AGY--SVVEINASD-----ERTAPMVKEKIENAVQNHSVLDADSRPVCLVID  394 (877)
T ss_pred             eEEeecCCCCChhHHHHHHHHh------cCc--eEEEecccc-----cccHHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence            5999999999999999999998      432  234444332     222222333333333222  11 1233678899


Q ss_pred             cCCCCChhHHHHHHHhccc
Q psy1695         130 EVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       130 Eid~~~~~~~~~L~~~le~  148 (202)
                      |||=.++.+.+.|+.++..
T Consensus       395 EIDGa~~~~Vdvilslv~a  413 (877)
T KOG1969|consen  395 EIDGAPRAAVDVILSLVKA  413 (877)
T ss_pred             cccCCcHHHHHHHHHHHHh
Confidence            9999999999999999973

>PRK14974 cell division protein FtsY; Provisional

Probab=98.46  E-value=1.2e-05  Score=66.90  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=24.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|+||+|+|||+++..+|..+..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~  166 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK  166 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999988755

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.45  E-value=1.6e-06  Score=73.32  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH----HHHHHhhhhCCceEEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT----NWIISNVTACDRAIFIF  128 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~l~~~~~~viii  128 (202)
                      .++|+||+|.|||||+.+++++...   .+....++.+....       +...+...+.    ..+.+..   ..++++|
T Consensus       115 plfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se~-------f~~~~v~a~~~~~~~~Fk~~y---~~dlllI  181 (408)
T COG0593         115 PLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSED-------FTNDFVKALRDNEMEKFKEKY---SLDLLLI  181 (408)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHHH-------HHHHHHHHHHhhhHHHHHHhh---ccCeeee
Confidence            4799999999999999999999766   32211222111110       0100111101    1112222   3479999


Q ss_pred             ecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhh
Q psy1695         129 DEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSEC  185 (202)
Q Consensus       129 DEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~  185 (202)
                      |+++.+..  ..+..+.-++..-.     + .+.-+|+||...+..+....-+++.+..
T Consensus       182 DDiq~l~gk~~~qeefFh~FN~l~-----~-~~kqIvltsdr~P~~l~~~~~rL~SR~~  234 (408)
T COG0593         182 DDIQFLAGKERTQEEFFHTFNALL-----E-NGKQIVLTSDRPPKELNGLEDRLRSRLE  234 (408)
T ss_pred             chHhHhcCChhHHHHHHHHHHHHH-----h-cCCEEEEEcCCCchhhccccHHHHHHHh
Confidence            99988654  23444444333211     0 2236788998888877655444444433

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.44  E-value=1.8e-06  Score=67.65  Aligned_cols=122  Identities=14%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|-+...+.+.+.-.+++.+..    ..++||+|.-|||||++++++...+..   .+.  ..+++...++       
T Consensus        61 ~l~Gvd~qk~~L~~NT~~F~~G~p----ANnVLLwGaRGtGKSSLVKA~~~e~~~---~gl--rLVEV~k~dl-------  124 (287)
T COG2607          61 DLVGVDRQKEALVRNTEQFAEGLP----ANNVLLWGARGTGKSSLVKALLNEYAD---EGL--RLVEVDKEDL-------  124 (287)
T ss_pred             HHhCchHHHHHHHHHHHHHHcCCc----ccceEEecCCCCChHHHHHHHHHHHHh---cCC--eEEEEcHHHH-------
Confidence            588999999999999998886632    236999999999999999999998655   332  2333322211       


Q ss_pred             hHHHHHHhHHHHHHhhhhCCc-eEEEEecCCCCCh-hHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         103 VSLYRLQLTNWIISNVTACDR-AIFIFDEVDKFPK-GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~-~viiiDEid~~~~-~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                          ..  ...+.+.++..+. -|+|+|+..--+. .....|..+||.+.   ...-.|++|-.|||..
T Consensus       125 ----~~--Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v---e~rP~NVl~YATSNRR  184 (287)
T COG2607         125 ----AT--LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV---EGRPANVLFYATSNRR  184 (287)
T ss_pred             ----hh--HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc---ccCCCeEEEEEecCCc
Confidence                00  2334555666655 5677788744433 45666777777541   0122789999999964

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=1.8e-05  Score=66.98  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=64.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcCccchhhhhc------------ccccCCCCchhHHHHHHhHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKGTSRFVHKFN------------SRIHFPNENHVSLYRLQLTNWIIS  116 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~  116 (202)
                      .|..++|+||+|+|||+++..+|..+.... ..+....++..+.            ....+.+-.....+. .+...+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~-~l~~~L~~  251 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFK-DLKEEITQ  251 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHH-HHHHHHHH
Confidence            466799999999999999999998764310 0111111111111            111111101111011 11222211


Q ss_pred             hhhhCCceEEEEecCCCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         117 NVTACDRAIFIFDEVDKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       117 ~l~~~~~~viiiDEid~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                         ...+++|+||++.+.+.+.  ...+.++++...     ....+++++.++.+.+.+.+.+
T Consensus       252 ---~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~-----~~~e~~LVlsat~~~~~~~~~~  306 (388)
T PRK12723        252 ---SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG-----RDAEFHLAVSSTTKTSDVKEIF  306 (388)
T ss_pred             ---hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC-----CCCeEEEEEcCCCCHHHHHHHH
Confidence               2346899999999998653  345566665421     0136788888888877776543

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.41  E-value=1.2e-06  Score=68.22  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|++.-++.+.+.+...        ...+++++||.|+|||++++.+.+.+..
T Consensus         1 F~gR~~el~~l~~~l~~~--------~~~~~~l~G~rg~GKTsLl~~~~~~~~~   46 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--------PSQHILLYGPRGSGKTSLLKEFINELKE   46 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred             CCCHHHHHHHHHHHHHhh--------cCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence            367777777776655432        1226899999999999999999998733

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.40  E-value=5.5e-07  Score=78.84  Aligned_cols=53  Identities=25%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++|++++++.+...+.....+-. . +...++|+||||+|||++|+.|++.+.
T Consensus        76 ~d~yGlee~ieriv~~l~~Aa~gl~-~-~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         76 EEFYGMEEAIEQIVSYFRHAAQGLE-E-KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             hcccCcHHHHHHHHHHHHHHHHhcC-C-CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            3589999999999999977654433 2 233799999999999999999999863

>COG1485 Predicted ATPase [General function prediction only]

Probab=98.40  E-value=1.3e-06  Score=71.79  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh------hcccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA  124 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  124 (202)
                      |.++.|||+.|+|||+|....-..+....+.  ...|..+      .+..+.+.. ..+.    .+...+   .  ....
T Consensus        65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~--R~HFh~FM~~vH~~l~~l~g~~-dpl~----~iA~~~---~--~~~~  132 (367)
T COG1485          65 VRGLYLWGGVGRGKTMLMDLFYESLPGERKR--RLHFHRFMARVHQRLHTLQGQT-DPLP----PIADEL---A--AETR  132 (367)
T ss_pred             CceEEEECCCCccHHHHHHHHHhhCCccccc--cccHHHHHHHHHHHHHHHcCCC-CccH----HHHHHH---H--hcCC
Confidence            3479999999999999999998886542111  1111111      111111111 1110    001111   1  1247


Q ss_pred             EEEEecCCCCChh---HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695         125 IFIFDEVDKFPKG---LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQPLKVYL  199 (202)
Q Consensus       125 viiiDEid~~~~~---~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~  199 (202)
                      |+-|||++=-+..   ++..|+..|=.         +.++++.|||..++.+-..-+     .|.+|+=-|+-||.++
T Consensus       133 vLCfDEF~VtDI~DAMiL~rL~~~Lf~---------~GV~lvaTSN~~P~~LY~dGl-----qR~~FLP~I~li~~~~  196 (367)
T COG1485         133 VLCFDEFEVTDIADAMILGRLLEALFA---------RGVVLVATSNTAPDNLYKDGL-----QRERFLPAIDLIKSHF  196 (367)
T ss_pred             EEEeeeeeecChHHHHHHHHHHHHHHH---------CCcEEEEeCCCChHHhcccch-----hHHhhHHHHHHHHHhe
Confidence            9999999655543   34444443333         678899999999987644333     2345555555555543

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.39  E-value=8e-06  Score=62.94  Aligned_cols=114  Identities=11%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc------------c-cccCC--CCchhHHHHHHhHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------------S-RIHFP--NENHVSLYRLQLTNWII  115 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~-~~~~~--~~~~~~~~~~~l~~~~~  115 (202)
                      |..++|+||+|+|||+++-.+|..+..   .+....++..+.            + .+..+  ......... .+.....
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-~~~~~~l   76 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-EIAREAL   76 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH-HHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH-HHHHHHH
Confidence            557999999999999999999988765   221111111110            0 00000  000000000 0111122


Q ss_pred             HhhhhCCceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695         116 SNVTACDRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  174 (202)
Q Consensus       116 ~~l~~~~~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~  174 (202)
                      +.......++|+||-..+.+.+  ..+.|.++++..      .-.++.+++.++.+.+.+.
T Consensus        77 ~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~------~~~~~~LVlsa~~~~~~~~  131 (196)
T PF00448_consen   77 EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL------NPDEVHLVLSATMGQEDLE  131 (196)
T ss_dssp             HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH------SSSEEEEEEEGGGGGHHHH
T ss_pred             HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc------CCccceEEEecccChHHHH
Confidence            2334455689999999988753  344555544432      1167888888888877665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.36  E-value=9.2e-07  Score=71.62  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          29 LAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .-++.+.+.+.....      ....+.++|++|+|||++|..+++.
T Consensus         3 ~~~~~l~~~L~~~~~------~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    3 KEIEKLKDWLLDNSN------EVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHHHTTTT------SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHhhCCCC------CeEEEEEEcCCcCCcceeeeecccc
Confidence            344555555544221      3336899999999999999999877

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.36  E-value=1.5e-06  Score=63.88  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++||||+|||+++..++..+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~   25 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT   25 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999988643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=98.34  E-value=5.9e-06  Score=61.38  Aligned_cols=56  Identities=7%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             HHHHhhhhCCceEEEEecCCCC-Ch--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         113 WIISNVTACDRAIFIFDEVDKF-PK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       113 ~~~~~l~~~~~~viiiDEid~~-~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      ...+.+....++++||||+..+ +-  --.+.++++++..+       .+.-+|+|....++.+.+
T Consensus        86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-------~~~evIlTGr~~p~~l~e  144 (159)
T cd00561          86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-------EDLELVLTGRNAPKELIE  144 (159)
T ss_pred             HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHH
Confidence            3445566677899999999665 22  23556777888766       788899999887776544

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=98.34  E-value=4.5e-07  Score=79.28  Aligned_cols=131  Identities=12%  Similarity=0.106  Sum_probs=84.2

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC-----
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN-----   99 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-----   99 (202)
                      ++++...+.+.+.+.+.....-      .+++.|.|||||-.+|+++.+.-      ....+|+.+++..+....     
T Consensus       316 ~~~d~s~a~l~rk~~rv~~~~~------pvll~GEtGtGKe~laraiH~~s------~~~gpfvAvNCaAip~~liesEL  383 (606)
T COG3284         316 PLLDPSRATLLRKAERVAATDL------PVLLQGETGTGKEVLARAIHQNS------EAAGPFVAVNCAAIPEALIESEL  383 (606)
T ss_pred             cccCHHHHHHHHHHHHHhhcCC------CeEecCCcchhHHHHHHHHHhcc------cccCCeEEEEeccchHHhhhHHH
Confidence            4666666776666666543322      58999999999999999998873      234567766664442211     


Q ss_pred             ----C-chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c-c-cCCceEEEEeeCcChH
Q psy1695         100 ----E-NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q-I-SFQNTIFLFLSNSGGT  171 (202)
Q Consensus       100 ----~-~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~-~-~~~~~~~Iltsn~~~~  171 (202)
                          + .+.+.+    .+-....+...+.+.+|+|||..|+-++|..|+++|+++.++- + . ..-..-+|.+|+..-.
T Consensus       384 FGy~~GafTga~----~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~  459 (606)
T COG3284         384 FGYVAGAFTGAR----RKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA  459 (606)
T ss_pred             hccCccccccch----hccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH
Confidence                1 111101    1112234455566889999999999999999999999998652 2 1 2223446777765533

>KOG1970|consensus

Probab=98.33  E-value=6.6e-06  Score=71.15  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCc-eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKA-LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.-+..-+..+..+++. +.... ++.+ ..++++||+|||||+..+.+++++..
T Consensus        84 LAVHkkKI~eVk~WL~~-~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~  136 (634)
T KOG1970|consen   84 LAVHKKKISEVKQWLKQ-VAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGY  136 (634)
T ss_pred             HhhhHHhHHHHHHHHHH-HHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence            33455666777777772 21111 1223 25899999999999999999999754

>PHA00729 NTP-binding motif containing protein

Probab=98.32  E-value=1.2e-05  Score=63.01  Aligned_cols=26  Identities=19%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ...++++|+||||||++|.++++.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34699999999999999999999864

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.31  E-value=2.2e-05  Score=66.31  Aligned_cols=138  Identities=15%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHhHhccC-CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc-------------
Q psy1695          27 QELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-------------   92 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~-~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------   92 (202)
                      ...+.+.+.+.+...+.... ...+|..++|+||+|+|||+++..||..+..   .+....++..+.             
T Consensus       216 ~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~ya  292 (436)
T PRK11889        216 EEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYV  292 (436)
T ss_pred             HHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHh
Confidence            34556666666655443221 0134557899999999999999999998765   321111111110             


Q ss_pred             ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          93 SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      .....+.. ... ....+...+...-.....++|+||-+.+.+.  ...+.|.++++...      -..+++++.++...
T Consensus       293 e~lgipv~-v~~-d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~------PdevlLVLsATtk~  364 (436)
T PRK11889        293 KTIGFEVI-AVR-DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKS  364 (436)
T ss_pred             hhcCCcEE-ecC-CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC------CCeEEEEECCccCh
Confidence            00000000 000 0111222222211123468999999988875  34566666665432      13455666666666


Q ss_pred             HHHHH
Q psy1695         171 TEIMN  175 (202)
Q Consensus       171 ~~i~~  175 (202)
                      ..+.+
T Consensus       365 ~d~~~  369 (436)
T PRK11889        365 KDMIE  369 (436)
T ss_pred             HHHHH
Confidence            55444

>PRK10536 hypothetical protein; Provisional

Probab=98.30  E-value=1e-05  Score=64.50  Aligned_cols=25  Identities=16%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             eEEEEecCCCCChhHHHHHHHhccc
Q psy1695         124 AIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       124 ~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      ++||+||++.+++.....++.-+.+
T Consensus       178 ~~vIvDEaqn~~~~~~k~~ltR~g~  202 (262)
T PRK10536        178 AVVILDEAQNVTAAQMKMFLTRLGE  202 (262)
T ss_pred             CEEEEechhcCCHHHHHHHHhhcCC
Confidence            8999999999999888888877665

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.30  E-value=1e-07  Score=79.16  Aligned_cols=150  Identities=17%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccc
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSR   86 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~   86 (202)
                      -+..|-+.+-..++|.+.++..+.-++-........    .+...++||+|.||+|||.+.+.+++..... ...|....
T Consensus        14 ~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s   93 (331)
T PF00493_consen   14 IFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSS   93 (331)
T ss_dssp             HHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGST
T ss_pred             HHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcc
Confidence            355666777788999988877776555443322110    1234579999999999999998775542220 00000000


Q ss_pred             hhhhhcccccCCCCchhHHHH-HHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccc------cCCc
Q psy1695          87 FVHKFNSRIHFPNENHVSLYR-LQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQI------SFQN  159 (202)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~------~~~~  159 (202)
                      -.....+ . ..++.. +.|. +  .    +++-.+..+|+.|||+|+|+.+..+.|.+.||.+.++-..      -..+
T Consensus        94 ~~gLta~-~-~~d~~~-~~~~le--a----Galvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar  164 (331)
T PF00493_consen   94 AAGLTAS-V-SRDPVT-GEWVLE--A----GALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNAR  164 (331)
T ss_dssp             CCCCCEE-E-CCCGGT-SSECEE--E-----HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred             cCCccce-e-cccccc-ceeEEe--C----CchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccch
Confidence            0000000 0 000000 0000 0  1    1233345689999999999999999999999998754221      2345


Q ss_pred             eEEEEeeCcCh
Q psy1695         160 TIFLFLSNSGG  170 (202)
Q Consensus       160 ~~~Iltsn~~~  170 (202)
                      +.++.++|...
T Consensus       165 ~svlaa~NP~~  175 (331)
T PF00493_consen  165 CSVLAAANPKF  175 (331)
T ss_dssp             -EEEEEE--TT
T ss_pred             hhhHHHHhhhh
Confidence            66777777653

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.29  E-value=5.6e-06  Score=59.99  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||||+||||+|+.+++.+
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            6899999999999999999874

...

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.27  E-value=6.8e-06  Score=63.34  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      ..++|+||+..++......|+..+..
T Consensus        94 ~~vliVDEasmv~~~~~~~ll~~~~~  119 (196)
T PF13604_consen   94 KDVLIVDEASMVDSRQLARLLRLAKK  119 (196)
T ss_dssp             TSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred             ccEEEEecccccCHHHHHHHHHHHHh
Confidence            47999999999999999989888876

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.19  E-value=2e-06  Score=76.92  Aligned_cols=52  Identities=31%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+.|.++++||+++++.+..++...    .      +++|+||||||||++++++++.+.+
T Consensus        12 ~~~~~~~~viG~~~a~~~l~~a~~~~----~------~~ll~G~pG~GKT~la~~la~~l~~   63 (608)
T TIGR00764        12 VPERLIDQVIGQEEAVEIIKKAAKQK----R------NVLLIGEPGVGKSMLAKAMAELLPD   63 (608)
T ss_pred             cchhhHhhccCHHHHHHHHHHHHHcC----C------CEEEECCCCCCHHHHHHHHHHHcCc
Confidence            44578899999999999887776632    1      6789999999999999999999865

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.19  E-value=2.9e-06  Score=75.36  Aligned_cols=127  Identities=8%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHH--HHHhHH----HHHHhhhhCCceEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY--RLQLTN----WIISNVTACDRAIF  126 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~----~~~~~l~~~~~~vi  126 (202)
                      ++++.|+.|+|||+++++++..|-.      ..+|+....+   .+....++..  ...+..    .-.+.+..+..+|+
T Consensus        27 Gv~i~g~~G~~ks~~~r~l~~llp~------~~p~r~~p~~---~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL   97 (584)
T PRK13406         27 GVVLRARAGPVRDRWLAALRALLPA------GTPLRRLPPG---IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVL   97 (584)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC------CCCcccCCCC---CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEE
Confidence            6999999999999999999998643      1233332211   0001111100  000000    00122444556899


Q ss_pred             EEecCCCCChhHHHHHHHhcccCcccc---cc--cCCce-EEEEeeCcChHHHHHHHHHHHHhhhHHHHhccc
Q psy1695         127 IFDEVDKFPKGLLDVIIPFIDHHAVYN---QI--SFQNT-IFLFLSNSGGTEIMNTFLELRKSECIEFIFQCQ  193 (202)
Q Consensus       127 iiDEid~~~~~~~~~L~~~le~~~~~~---~~--~~~~~-~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~~~~  193 (202)
                      |+||++.+++.+++.|++.|++|.++.   +.  .+.-. .+|.|-| +.    ++...+.....+||.+.+.
T Consensus        98 ~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~----~~~~~L~~~lLDRf~l~v~  165 (584)
T PRK13406         98 VLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GA----EEDERAPAALADRLAFHLD  165 (584)
T ss_pred             EecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Ch----hcccCCCHHhHhheEEEEE
Confidence            999999999999999999999997642   22  23222 2333311 11    2223345556677776654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.18  E-value=0.0002  Score=58.00  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          27 QELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .....+.+.+.+...+...     ...+.|..++|+||+|+|||+++..+|..+..
T Consensus        43 ~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~   98 (272)
T TIGR00064        43 AELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKK   98 (272)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3455666666666654321     01234567889999999999999999988754

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=98.18  E-value=6.1e-06  Score=63.82  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|||||++|-+.|-.+..
T Consensus        21 ~v~~~G~AGTGKT~LA~a~Al~~v~   45 (205)
T PF02562_consen   21 LVIVNGPAGTGKTFLALAAALELVK   45 (205)
T ss_dssp             EEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5789999999999999999877655

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=0.00012  Score=62.29  Aligned_cols=118  Identities=9%  Similarity=0.068  Sum_probs=62.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc------------ccccCCCCchhHHHHHHhHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN------------SRIHFPNENHVSLYRLQLTNWIISN  117 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~  117 (202)
                      ++..++|.||+|+|||+++..+|......  .+....++..+.            ....+. +...  ...  ...+.+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv-p~~~--~~~--~~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGM-PFYP--VKD--IKKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCC-Ceee--hHH--HHHHHHH
Confidence            34568899999999999999999764221  111111111100            000000 0000  000  1223334


Q ss_pred             hhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         118 VTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       118 l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                      +.....++|+||=+.+.+.  ...+.|.++++...   ..+...+++++.++.+.+.+.+..
T Consensus       295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~---~~~~~e~~LVLsAt~~~~~~~~~~  353 (432)
T PRK12724        295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFG---EKDSVENLLVLSSTSSYHHTLTVL  353 (432)
T ss_pred             HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhc---CCCCCeEEEEEeCCCCHHHHHHHH
Confidence            4445668999998877753  44555655554310   001146778888888876665543

>PF05729 NACHT: NACHT domain

Probab=98.17  E-value=1.6e-05  Score=58.71  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++|++|+|||++++.++..+..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh
Confidence            4789999999999999999998766

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=98.16  E-value=8.5e-06  Score=68.35  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.|.||||||.+|-.++..+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            57899999999999999999998

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.15  E-value=3.7e-06  Score=63.25  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++|+||+||||+.+.+.+.+.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh
Confidence            378999999999999999999974

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.13  E-value=8.6e-05  Score=63.87  Aligned_cols=49  Identities=22%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          29 LAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.+.+.+...+.....    +..|..++|+|++|+|||+++..+|..+..
T Consensus        69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~  121 (437)
T PRK00771         69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKK  121 (437)
T ss_pred             HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            3455555555554432210    135778999999999999999999998765

>KOG0477|consensus

Probab=98.12  E-value=4.2e-06  Score=73.29  Aligned_cols=143  Identities=13%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCC----ceEEEEecCCCCcHHHHHHHHHHHhhcc---ccCcCccchh
Q psy1695          16 LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTK----ALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTSRFV   88 (202)
Q Consensus        16 l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~----pl~~ll~Gp~GtGKT~la~~la~~l~~~---~~~~~~~~~~   88 (202)
                      +-..+-..|+|+..++..+.-++..........+.    -.++||.|.||||||-+.+.+++...+.   ++.|..+  +
T Consensus       443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa--v  520 (854)
T KOG0477|consen  443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA--V  520 (854)
T ss_pred             HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc--c
Confidence            34455568999999999999888875433221111    1259999999999999999888874331   1111111  1


Q ss_pred             hhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCceEE
Q psy1695          89 HKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQNTIF  162 (202)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~~~~  162 (202)
                      .....-...+....   |.     --.+++--+..+|-+|||+|+|+..-...+...||...+...      .=...+.+
T Consensus       521 GLTa~v~KdPvtrE---WT-----LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctv  592 (854)
T KOG0477|consen  521 GLTAYVRKDPVTRE---WT-----LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTV  592 (854)
T ss_pred             ceeEEEeeCCccce---ee-----eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhh
Confidence            11000000000000   10     001233344568899999999998777778888887544321      01245677


Q ss_pred             EEeeCc
Q psy1695         163 LFLSNS  168 (202)
Q Consensus       163 Iltsn~  168 (202)
                      |.++|.
T Consensus       593 IAAanP  598 (854)
T KOG0477|consen  593 IAAANP  598 (854)
T ss_pred             heecCC
Confidence            888886

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.12  E-value=0.00015  Score=62.31  Aligned_cols=136  Identities=13%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhHhccCCC--CCceEEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhhc------------cc
Q psy1695          30 AISHICGALKNHFQNRYHN--TKALAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKFN------------SR   94 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~~~--~~pl~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~------------~~   94 (202)
                      +.+.+.+.+...+......  ..+-.++|+||+|+|||+++..||..+. ..  .+....++..+.            ..
T Consensus       198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~  275 (424)
T PRK05703        198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAK  275 (424)
T ss_pred             HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHH
Confidence            4445555555544322100  1123689999999999999999988764 21  111111111110            00


Q ss_pred             -ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695          95 -IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus        95 -~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                       +..+... .. ....+...+..   ...+++|+||...+.+.  ...+.|..+++...     .-....+++.++....
T Consensus       276 ~~~vp~~~-~~-~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~-----~~~~~~LVl~a~~~~~  345 (424)
T PRK05703        276 IMGIPVEV-VY-DPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEELKALIEFSG-----EPIDVYLVLSATTKYE  345 (424)
T ss_pred             HhCCceEc-cC-CHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC-----CCCeEEEEEECCCCHH
Confidence             0000000 00 00111222211   12468999999977665  34556777776210     1146677888888876


Q ss_pred             HHHHHH
Q psy1695         172 EIMNTF  177 (202)
Q Consensus       172 ~i~~~~  177 (202)
                      .+.+..
T Consensus       346 ~l~~~~  351 (424)
T PRK05703        346 DLKDIY  351 (424)
T ss_pred             HHHHHH
Confidence            665543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.11  E-value=0.00022  Score=61.09  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=24.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|+|++|+||||++..+|..+..
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~  126 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR  126 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4667999999999999999999998754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.11  E-value=1.5e-05  Score=76.60  Aligned_cols=122  Identities=13%  Similarity=0.224  Sum_probs=75.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh----------cccccCCCCchhHHHHHHhHHHHHHhhhhCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF----------NSRIHFPNENHVSLYRLQLTNWIISNVTACD  122 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  122 (202)
                      ++++-||+.+|||++...+|+....        .|++++          ...+...+.+..+ +.   .+.+.++++++.
T Consensus       890 P~LiQGpTSSGKTSMI~yla~~tgh--------kfVRINNHEHTdlqeYiGTyvTdd~G~ls-Fk---EGvLVeAlR~Gy  957 (4600)
T COG5271         890 PLLIQGPTSSGKTSMILYLARETGH--------KFVRINNHEHTDLQEYIGTYVTDDDGSLS-FK---EGVLVEALRRGY  957 (4600)
T ss_pred             cEEEecCCCCCcchHHHHHHHHhCc--------cEEEecCcccchHHHHhhceeecCCCcee-ee---hhHHHHHHhcCc
Confidence            4799999999999999999998432        233332          1222222333332 33   356777787765


Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcccCcc-----ccc--ccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHHHh
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDHHAV-----YNQ--ISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF  190 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~~~~-----~~~--~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~~~  190 (202)
                        -||+||.+.++.+++.+|.++|+..+-     ++-  +...+-.+..|-|... ....+- -+.+++|.||+.
T Consensus       958 --WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg-~YgGRK-~LSrAFRNRFlE 1028 (4600)
T COG5271         958 --WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG-GYGGRK-GLSRAFRNRFLE 1028 (4600)
T ss_pred             --EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc-cccchH-HHHHHHHhhhHh
Confidence              478999999999999999999998642     111  2444444555556321 111111 145667777653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.09  E-value=1.2e-05  Score=64.98  Aligned_cols=103  Identities=21%  Similarity=0.359  Sum_probs=56.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhh----------CC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTA----------CD  122 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~----------~~  122 (202)
                      +++|+||+|||||.+++..-+.+..   .    .+..   ..+.++......    .+...+...+..          +.
T Consensus        35 pvLl~G~~GtGKT~li~~~l~~l~~---~----~~~~---~~~~~s~~Tts~----~~q~~ie~~l~k~~~~~~gP~~~k  100 (272)
T PF12775_consen   35 PVLLVGPSGTGKTSLIQNFLSSLDS---D----KYLV---ITINFSAQTTSN----QLQKIIESKLEKRRGRVYGPPGGK  100 (272)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCSTT---C----CEEE---EEEES-TTHHHH----HHHHCCCTTECECTTEEEEEESSS
T ss_pred             cEEEECCCCCchhHHHHhhhccCCc---c----ccce---eEeeccCCCCHH----HHHHHHhhcEEcCCCCCCCCCCCc
Confidence            6799999999999999887655332   1    1111   111111111111    111111111111          12


Q ss_pred             ceEEEEecCCCCCh------hHHHHHHHhcccCccccc-----ccCCceEEEEeeCcC
Q psy1695         123 RAIFIFDEVDKFPK------GLLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG  169 (202)
Q Consensus       123 ~~viiiDEid~~~~------~~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~  169 (202)
                      .-|++|||++.-.+      ...+.|.|+++.+-..+.     ....++.+|.+.|.+
T Consensus       101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~  158 (272)
T PF12775_consen  101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT  158 (272)
T ss_dssp             EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST
T ss_pred             EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC
Confidence            25889999965543      357889999998754432     356678888877764

>KOG0478|consensus

Probab=98.07  E-value=5.7e-06  Score=73.07  Aligned_cols=147  Identities=15%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc-CC---CCCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccch
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNR-YH---NTKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRF   87 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~-~~---~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~   87 (202)
                      .+.|-..+-..|.|.+.+++.+.-++....... ..   .+.-.++||+|.||||||.+.+.+++.+.+. +..|..+.-
T Consensus       420 y~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSa  499 (804)
T KOG0478|consen  420 YELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSA  499 (804)
T ss_pred             HHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccch
Confidence            345556666788999999888877776531110 00   1112469999999999999999999885441 001111111


Q ss_pred             hhhhcccccCCCCchhHHHHHHhHHHH--HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCc
Q psy1695          88 VHKFNSRIHFPNENHVSLYRLQLTNWI--ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQN  159 (202)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~  159 (202)
                      +...  .+...++..        ...+  .+++--+..++--|||+|||+....+.|.++||.-.+.-.      .=..+
T Consensus       500 vGLT--ayVtrd~dt--------kqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR  569 (804)
T KOG0478|consen  500 VGLT--AYVTKDPDT--------RQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNAR  569 (804)
T ss_pred             hcce--eeEEecCcc--------ceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence            1000  000000000        0000  1233334557888999999999999999999998654321      12245


Q ss_pred             eEEEEeeCcC
Q psy1695         160 TIFLFLSNSG  169 (202)
Q Consensus       160 ~~~Iltsn~~  169 (202)
                      +.++..+|..
T Consensus       570 ~SVLAaANP~  579 (804)
T KOG0478|consen  570 CSVLAAANPI  579 (804)
T ss_pred             ceeeeeeccc
Confidence            6677777743

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.06  E-value=7.1e-05  Score=57.57  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=22.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|+|+||+|||++|+-+|+.|..
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHHH
Confidence            789999999999999999999866

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.06  E-value=4.9e-06  Score=62.77  Aligned_cols=49  Identities=20%  Similarity=0.292  Sum_probs=32.7

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.+..++.+...+. ...    ...|..++++|++|+|||++.+.+.+.+..
T Consensus         2 fvgR~~e~~~l~~~l~-~~~----~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-AAQ----SGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-GTS----S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HHH----cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6899999998888776 222    124557999999999999999988888655

>KOG1942|consensus

Probab=98.05  E-value=1.4e-05  Score=64.48  Aligned_cols=56  Identities=23%  Similarity=0.170  Sum_probs=39.6

Q ss_pred             HHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          19 QLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        19 ~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +....++||..|.+..--.+.-...-.-   .+.+++|.||||||||.+|-+++++|-.
T Consensus        35 ~~~~g~vGQ~~AReAagiivdlik~Kkm---aGravLlaGppgtGKTAlAlaisqELG~   90 (456)
T KOG1942|consen   35 EVAAGFVGQENAREAAGIIVDLIKSKKM---AGRAVLLAGPPGTGKTALALAISQELGP   90 (456)
T ss_pred             ecccccccchhhhhhhhHHHHHHHhhhc---cCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence            3446799999988775433332211110   2237999999999999999999999765

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00028  Score=57.97  Aligned_cols=114  Identities=14%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCc------cchh-------hhhc--------ccccCCCCchhHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT------SRFV-------HKFN--------SRIHFPNENHVSLYR  107 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~------~~~~-------~~~~--------~~~~~~~~~~~~~~~  107 (202)
                      ++|.+++|+|..|+||||..--||..+..   .|..      ..|-       ..+.        ..-.+.+|..+- | 
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVa-f-  211 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVA-F-  211 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHH-H-
Confidence            46889999999999999999999999876   4421      0010       0000        101233444332 3 


Q ss_pred             HHhHHHHHHhhhhCCceEEEEecCCCCChh--HHHHHH---HhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         108 LQLTNWIISNVTACDRAIFIFDEVDKFPKG--LLDVII---PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       108 ~~l~~~~~~~l~~~~~~viiiDEid~~~~~--~~~~L~---~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                          +.+.. ......+++++|-+.+++..  ..+.|.   +++....   ...-..+++++-+..+.+.+.+
T Consensus       212 ----DAi~~-Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~---~~ap~e~llvlDAttGqnal~Q  276 (340)
T COG0552         212 ----DAIQA-AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD---PDAPHEILLVLDATTGQNALSQ  276 (340)
T ss_pred             ----HHHHH-HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc---CCCCceEEEEEEcccChhHHHH
Confidence                23322 33445799999999999873  333333   3333210   0011335555567777665544

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.04  E-value=5.5e-06  Score=74.16  Aligned_cols=125  Identities=15%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCC-----CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695          14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNT-----KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV   88 (202)
Q Consensus        14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~-----~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~   88 (202)
                      ..+-+.+-..+.|.+.+++.+.-++-....... ++     .=.++||.|.||||||.+.+.+++.+..   .    -|.
T Consensus       278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~-~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr---~----vyt  349 (682)
T COG1241         278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKKNL-PDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR---G----VYT  349 (682)
T ss_pred             HHHHHHhcccccCcHHHHHHHHHHhcCCCcccC-CCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc---e----EEE
Confidence            444556667899999988888776665322111 11     1147999999999999999999887533   1    111


Q ss_pred             hhhcccccCC------CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc
Q psy1695          89 HKFNSRIHFP------NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY  152 (202)
Q Consensus        89 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~  152 (202)
                      ..-.+.-.+-      ++. .+.|.     --.+++--+..+|..|||+|+|+......|...||...++
T Consensus       350 sgkgss~~GLTAav~rd~~-tge~~-----LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIs  413 (682)
T COG1241         350 SGKGSSAAGLTAAVVRDKV-TGEWV-----LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTIS  413 (682)
T ss_pred             ccccccccCceeEEEEccC-CCeEE-----EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEee
Confidence            1101000000      000 00000     0012333445689999999999999999999999987643

>PRK10867 signal recognition particle protein; Provisional

Probab=98.03  E-value=0.00054  Score=58.93  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          30 AISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++.+.+.+...+....     ....|..++|+||+|+|||+++..+|..+..
T Consensus        74 ~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~  126 (433)
T PRK10867         74 VIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKK  126 (433)
T ss_pred             HHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            44445555555443211     0234667999999999999999999988755

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.02  E-value=3.3e-05  Score=58.50  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++.||||+|||+++..++.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~   25 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA   25 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999988777543

A related protein is found in archaea.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.02  E-value=7.2e-06  Score=64.17  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .|..++|+|+||+|||++|+.++.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC
Confidence            455699999999999999999864

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.01  E-value=5.5e-06  Score=74.17  Aligned_cols=50  Identities=34%  Similarity=0.439  Sum_probs=41.2

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          18 EQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        18 ~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+-++++||+++++.+..++...    .      .++|+||||+|||++++++++.+.+
T Consensus        27 ~~~~~~vigq~~a~~~L~~~~~~~----~------~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         27 ERLIDQVIGQEHAVEVIKKAAKQR----R------HVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             cccHHHcCChHHHHHHHHHHHHhC----C------eEEEECCCCCcHHHHHHHHHHHcCh
Confidence            455678999999999887766532    1      6899999999999999999998754

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.01  E-value=7.5e-05  Score=56.00  Aligned_cols=29  Identities=28%  Similarity=0.542  Sum_probs=26.8

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.++.|+|.+|+|||++|.++.+.|+.
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~   49 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFA   49 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            36778999999999999999999999988

>KOG0735|consensus

Probab=98.01  E-value=3.6e-05  Score=68.58  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      ++++.||+|+|||.|++++..++..   . ....+..+.++.+.+..   ....+..+...+.+.+...| +||++|+.|
T Consensus       433 ~Ill~G~~GsGKT~L~kal~~~~~k---~-~~~hv~~v~Cs~l~~~~---~e~iQk~l~~vfse~~~~~P-SiIvLDdld  504 (952)
T KOG0735|consen  433 NILLNGPKGSGKTNLVKALFDYYSK---D-LIAHVEIVSCSTLDGSS---LEKIQKFLNNVFSEALWYAP-SIIVLDDLD  504 (952)
T ss_pred             cEEEeCCCCCCHhHHHHHHHHHhcc---c-cceEEEEEechhccchh---HHHHHHHHHHHHHHHHhhCC-cEEEEcchh
Confidence            6999999999999999999999653   2 11122233455544332   22233333444455555444 799999997


Q ss_pred             CC
Q psy1695         133 KF  134 (202)
Q Consensus       133 ~~  134 (202)
                      -+
T Consensus       505 ~l  506 (952)
T KOG0735|consen  505 CL  506 (952)
T ss_pred             hh
Confidence            65

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=98.00  E-value=0.00014  Score=58.79  Aligned_cols=109  Identities=11%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  103 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
                      ++=-++|++.+.+..+-. ..+.     -+.+|.|..|+||+++++..|.. ..       -.+..+...     ..-..
T Consensus        10 lVlf~~ai~hi~ri~RvL-~~~~-----Gh~LLvG~~GsGr~sl~rLaa~i-~~-------~~~~~i~~~-----~~y~~   70 (268)
T PF12780_consen   10 LVLFDEAIEHIARISRVL-SQPR-----GHALLVGVGGSGRQSLARLAAFI-CG-------YEVFQIEIT-----KGYSI   70 (268)
T ss_dssp             ----HHHHHHHHHHHHHH-CSTT-----EEEEEECTTTSCHHHHHHHHHHH-TT-------EEEE-TTTS-----TTTHH
T ss_pred             eeeHHHHHHHHHHHHHHH-cCCC-----CCeEEecCCCccHHHHHHHHHHH-hc-------cceEEEEee-----CCcCH
Confidence            444678888876555443 3221     25899999999999999865554 22       122222211     11112


Q ss_pred             HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      ..+.++++..+..+-......+++++|.+-..+...+.+..+|..|.+
T Consensus        71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei  118 (268)
T PF12780_consen   71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI  118 (268)
T ss_dssp             HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC
Confidence            335555555554443344557888999988888888888888888764

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=97.98  E-value=4e-05  Score=64.62  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |..+.+.+.+++..        ..|..+++.||.|||||++.++|...+..
T Consensus         6 Q~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen    6 QRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             HHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            66777777666653        15667899999999999999999988644

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.98  E-value=0.00011  Score=57.98  Aligned_cols=76  Identities=24%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      +-.+.||+|||||++++.+|+.+-.        .++..+++.     .-.   +. .+.+-+.+....+  .-+.|||++
T Consensus        34 ~~~~~GpagtGKtetik~La~~lG~--------~~~vfnc~~-----~~~---~~-~l~ril~G~~~~G--aW~cfdefn   94 (231)
T PF12774_consen   34 GGALSGPAGTGKTETIKDLARALGR--------FVVVFNCSE-----QMD---YQ-SLSRILKGLAQSG--AWLCFDEFN   94 (231)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCTT----------EEEEETTS-----SS----HH-HHHHHHHHHHHHT---EEEEETCC
T ss_pred             CCCCcCCCCCCchhHHHHHHHHhCC--------eEEEecccc-----ccc---HH-HHHHHHHHHhhcC--chhhhhhhh
Confidence            5678999999999999999998643        233333322     111   11 2233444444443  467899999


Q ss_pred             CCChhHHHHHHHhcc
Q psy1695         133 KFPKGLLDVIIPFID  147 (202)
Q Consensus       133 ~~~~~~~~~L~~~le  147 (202)
                      +++.+++..+.+.+.
T Consensus        95 rl~~~vLS~i~~~i~  109 (231)
T PF12774_consen   95 RLSEEVLSVISQQIQ  109 (231)
T ss_dssp             CSSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999988777665554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.98  E-value=0.00043  Score=57.27  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          28 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        28 ~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+.+.+.+.+...+....     ....|..++|+||+|+|||+++..+|..+..
T Consensus        86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~  140 (318)
T PRK10416         86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKA  140 (318)
T ss_pred             HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3455555555555543111     0124567899999999999999999998765

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.97  E-value=6.9e-06  Score=57.85  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||||+||||+|+.||+.+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            368999999999999999999853

...

>KOG0480|consensus

Probab=97.94  E-value=4.1e-05  Score=67.37  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce----EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL----AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV   88 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl----~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~   88 (202)
                      ...|-..|-..|+|++.++..+.-++.....-....+.|+    +++++|.||+|||-+.++....+.+   .    -|+
T Consensus       336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR---~----vYt  408 (764)
T KOG0480|consen  336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR---S----VYT  408 (764)
T ss_pred             HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc---c----eEe
Confidence            3455566667899999999999877776432211112333    6999999999999999988776433   1    111


Q ss_pred             hhhc---ccccCC--CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695          89 HKFN---SRIHFP--NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus        89 ~~~~---~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      .-..   +.+..+  .....+.|.-     -.+++.-+..+|--|||+|||+..-+.+|...||...+
T Consensus       409 sGkaSSaAGLTaaVvkD~esgdf~i-----EAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtI  471 (764)
T KOG0480|consen  409 SGKASSAAGLTAAVVKDEESGDFTI-----EAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTI  471 (764)
T ss_pred             cCcccccccceEEEEecCCCCceee-----ecCcEEEccCceEEechhcccChHhHHHHHHHHHhhee
Confidence            1000   001000  0000111100     01234444567888999999999889999999998653

>KOG0736|consensus

Probab=97.94  E-value=8.9e-05  Score=66.65  Aligned_cols=162  Identities=20%  Similarity=0.228  Sum_probs=85.2

Q ss_pred             CCChHHHHHHHHHHHHHhHhccC-CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          24 VHGQELAISHICGALKNHFQNRY-HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~-~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      ..+++..+..+.+.+.....-.. ....-.++|++|+||||||++.+++|+++.-        .++.+++..+.....+.
T Consensus       403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~--------h~~evdc~el~~~s~~~  474 (953)
T KOG0736|consen  403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL--------HLLEVDCYELVAESASH  474 (953)
T ss_pred             CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC--------ceEeccHHHHhhcccch
Confidence            45566655555555443221100 0012236999999999999999999999644        34555554444333322


Q ss_pred             hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC---hH
Q psy1695         103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG---GT  171 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~---~~  171 (202)
                      ..    .-...+....+.++..|+++-..|-+.        ...+..+...+....  -..+...++||.+++..   +.
T Consensus       475 ~e----tkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~--~~~~~~~~ivv~t~~s~~~lp~  548 (953)
T KOG0736|consen  475 TE----TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNED--FKFSCPPVIVVATTSSIEDLPA  548 (953)
T ss_pred             hH----HHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhccc--ccCCCCceEEEEeccccccCCH
Confidence            21    113344445566677778776664442        123344444443100  01255678888888764   23


Q ss_pred             HHHHHHHHHHHhhhHHHHhccchhHHHh
Q psy1695         172 EIMNTFLELRKSECIEFIFQCQPLKVYL  199 (202)
Q Consensus       172 ~i~~~~~~~~~~~~~r~~~~~~~~~~~~  199 (202)
                      .+...++.....+-....-|++.|+-|+
T Consensus       549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~  576 (953)
T KOG0736|consen  549 DIQSLFLHEIEVPALSEEQRLEILQWYL  576 (953)
T ss_pred             HHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence            3444444444444444444444444443

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.93  E-value=0.00017  Score=54.32  Aligned_cols=54  Identities=4%  Similarity=0.150  Sum_probs=38.0

Q ss_pred             HHHHhhhhCCceEEEEecCC------CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         113 WIISNVTACDRAIFIFDEVD------KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       113 ~~~~~l~~~~~~viiiDEid------~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      ...+.+....+++||+||+.      .++.   +.+.++|+..+       .+.-+|+|....++.+.+.
T Consensus        88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp-------~~~evVlTGR~~p~~l~e~  147 (173)
T TIGR00708        88 HAKEMLADPELDLVLLDELTYALKYGYLDV---EEVVEALQERP-------GHQHVIITGRGCPQDLLEL  147 (173)
T ss_pred             HHHHHHhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCC-------CCCEEEEECCCCCHHHHHh
Confidence            44555666788999999995      4443   34556667666       7788999998777665543

Alternate name: corrinoid adenosyltransferase.

>KOG1514|consensus

Probab=97.93  E-value=5.8e-05  Score=67.12  Aligned_cols=142  Identities=16%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc--chhhhhcccccCC
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS--RFVHKFNSRIHFP   98 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~~~~~   98 (202)
                      .+.+.+.+.-...|...+..++....   ....+.+.|-||||||.+++.+-+.|....+.+...  .|++++...+..+
T Consensus       395 p~sLpcRe~E~~~I~~f~~~~i~~~~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~  471 (767)
T KOG1514|consen  395 PESLPCRENEFSEIEDFLRSFISDQG---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASP  471 (767)
T ss_pred             cccccchhHHHHHHHHHHHhhcCCCC---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCH
Confidence            35688889999999888888876522   233688999999999999999999887521122122  2444443333222


Q ss_pred             CCchhHHHHH---------HhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          99 NENHVSLYRL---------QLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        99 ~~~~~~~~~~---------~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ..-|...|..         .-...+...+.    ..+..||+|||.|.+-..-|+.|..+++-+..    ..+..++|.+
T Consensus       472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----~~sKLvvi~I  547 (767)
T KOG1514|consen  472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL----KNSKLVVIAI  547 (767)
T ss_pred             HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC----CCCceEEEEe
Confidence            2112111111         00111111222    11238999999999988888999888886532    3367788888


Q ss_pred             eCcC
Q psy1695         166 SNSG  169 (202)
Q Consensus       166 sn~~  169 (202)
                      +|.-
T Consensus       548 aNTm  551 (767)
T KOG1514|consen  548 ANTM  551 (767)
T ss_pred             cccc
Confidence            8765

>TIGR00959 ffh signal recognition particle protein

Probab=97.93  E-value=0.001  Score=57.25  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +|..++|+|++|+|||+++..+|..+.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            477899999999999999999999865

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.92  E-value=6.1e-05  Score=55.08  Aligned_cols=96  Identities=11%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEe
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFD  129 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiD  129 (202)
                      .+.+.||+|+|||++.++++..+...  .|   . +..+.   ..+...   ..+....  +-.+..++... .+++++|
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G---~-i~~~~~~~i~~~~~---lS~G~~~--rv~laral~~~-p~illlD   95 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPD--EG---I-VTWGSTVKIGYFEQ---LSGGEKM--RLALAKLLLEN-PNLLLLD   95 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCC--ce---E-EEECCeEEEEEEcc---CCHHHHH--HHHHHHHHhcC-CCEEEEe
Confidence            58899999999999999998875431  11   1 11110   001111   1111111  22333344433 4799999


Q ss_pred             cC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         130 EV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       130 Ei-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      |- ..++......+.+++.+-         +..+|++|...
T Consensus        96 EP~~~LD~~~~~~l~~~l~~~---------~~til~~th~~  127 (144)
T cd03221          96 EPTNHLDLESIEALEEALKEY---------PGTVILVSHDR  127 (144)
T ss_pred             CCccCCCHHHHHHHHHHHHHc---------CCEEEEEECCH
Confidence            99 466777788888887652         23556666543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.89  E-value=8.8e-05  Score=57.20  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||+++.+++..+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4789999999999999999888754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.88  E-value=0.00014  Score=55.53  Aligned_cols=114  Identities=9%  Similarity=0.056  Sum_probs=64.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh---------------------h-cc-cccCCCCchhH--HHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------------------F-NS-RIHFPNENHVS--LYR  107 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~---------------------~-~~-~~~~~~~~~~~--~~~  107 (202)
                      .+.++|++|.|||++|..+|-....   .|....++.+                     . +. .+.+.......  ...
T Consensus        24 ~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~  100 (191)
T PRK05986         24 LLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA  100 (191)
T ss_pred             eEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence            5889999999999999998887655   3321110000                     0 00 00000000000  011


Q ss_pred             HHhHHHHHHhhhhCCceEEEEecCCCCCh-h--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         108 LQLTNWIISNVTACDRAIFIFDEVDKFPK-G--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       108 ~~l~~~~~~~l~~~~~~viiiDEid~~~~-~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      ........+.+....+++||+||+..+-. .  -.+.+..+|+..+       .++-+|+|-...++.+.+.
T Consensus       101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-------~~~evVlTGR~~p~~Lie~  165 (191)
T PRK05986        101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-------GMQHVVITGRGAPRELIEA  165 (191)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-------CCCEEEEECCCCCHHHHHh
Confidence            11223345556677889999999944322 1  1344666666665       6788999998777665443

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.87  E-value=4.3e-05  Score=56.61  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|.+++|+|.+|+|||++|+++.+.|..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~   28 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFA   28 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4668999999999999999999999987

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14527 adenylate kinase; Provisional

Probab=97.86  E-value=0.00054  Score=52.36  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..+++.||||+|||++|+.+++.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            55579999999999999999999875

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=0.00017  Score=60.72  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +-.++|+||+|+|||+++..||..+.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999998753

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.84  E-value=4.2e-05  Score=63.42  Aligned_cols=53  Identities=19%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.++|-+++++.+.+.++....+.. . +...++|.||+|+|||++++.|.+.+
T Consensus        60 ~~~~~G~~~~i~~lV~~fk~AA~g~~-~-~krIl~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   60 EDEFYGMEETIERLVNYFKSAAQGLE-E-RKRILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhccC-c-cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999988665432 2 23368999999999999999998876

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PLN03210 Resistant to P

Probab=97.81  E-value=0.00025  Score=68.16  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.+..++.+...+...      ...+..+.++|++|+||||+|+++++.+..
T Consensus       185 ~~vG~~~~l~~l~~lL~l~------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        185 DFVGIEDHIAKMSSLLHLE------SEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             cccchHHHHHHHHHHHccc------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            4677777776665444311      113336889999999999999999887644

syringae 6; Provisional

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.81  E-value=0.00012  Score=55.51  Aligned_cols=87  Identities=13%  Similarity=0.035  Sum_probs=48.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc--ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN--SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  130 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE  130 (202)
                      .+.+.||+|+|||++.+.++..+.+.  .|   . +.++.  ..+........+....  .-.+..++... .+++++||
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G---~-i~~~g~~i~~~~q~~~LSgGq~q--rv~laral~~~-p~lllLDE   97 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPN--GD---N-DEWDGITPVYKPQYIDLSGGELQ--RVAIAAALLRN-ATFYLFDE   97 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCC--Cc---E-EEECCEEEEEEcccCCCCHHHHH--HHHHHHHHhcC-CCEEEEEC
Confidence            58899999999999999999876441  11   1 11110  0111111112221111  22233334433 47999999


Q ss_pred             C-CCCChhHHHHHHHhccc
Q psy1695         131 V-DKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       131 i-d~~~~~~~~~L~~~le~  148 (202)
                      - ..+++.....+.+++.+
T Consensus        98 Pts~LD~~~~~~l~~~l~~  116 (177)
T cd03222          98 PSAYLDIEQRLNAARAIRR  116 (177)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            8 45666666666666654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.81  E-value=0.00026  Score=55.21  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..++|+||.|+|||++.+.++..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH
Confidence            46899999999999999999843

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=97.77  E-value=0.0001  Score=67.59  Aligned_cols=89  Identities=10%  Similarity=0.029  Sum_probs=46.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh------hhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH------KFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF  126 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vi  126 (202)
                      ..++.|++|||||++++++...+..   .+.....+.      ..+..-.+.....+..+.   ...-...-...+.++|
T Consensus       370 ~~il~G~aGTGKTtll~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~---~~~~~~~~~~~~~~ll  443 (744)
T TIGR02768       370 IAVVVGRAGTGKSTMLKAAREAWEA---AGYRVIGAALSGKAAEGLQAESGIESRTLASLE---YAWANGRDLLSDKDVL  443 (744)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHhccCCceeeHHHHH---hhhccCcccCCCCcEE
Confidence            5789999999999999999877544   221100000      000000000000111000   0000000011245899


Q ss_pred             EEecCCCCChhHHHHHHHhcc
Q psy1695         127 IFDEVDKFPKGLLDVIIPFID  147 (202)
Q Consensus       127 iiDEid~~~~~~~~~L~~~le  147 (202)
                      |+||+..++......|+....
T Consensus       444 IvDEasMv~~~~~~~Ll~~~~  464 (744)
T TIGR02768       444 VIDEAGMVGSRQMARVLKEAE  464 (744)
T ss_pred             EEECcccCCHHHHHHHHHHHH
Confidence            999999999887777776544

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.77  E-value=2.7e-05  Score=58.16  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|..++|+|+||+|||++|+.+|+.+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999999996

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00092  Score=56.42  Aligned_cols=27  Identities=30%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +-.++|+||+|+|||+++..+|..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~  232 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLK  232 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999988654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.0011  Score=58.15  Aligned_cols=26  Identities=23%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -.+.|+||+|+|||+++..|+..+..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~  376 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAA  376 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36889999999999999999887543

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.75  E-value=0.00079  Score=55.49  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             HHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          35 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        35 ~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+...+.++. ...|.++.+.|+=|+|||++.+.+.+.+..
T Consensus         5 a~~la~~I~~~~-~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~   46 (325)
T PF07693_consen    5 AKALAEIIKNPD-SDDPFVIGLYGEWGSGKSSFLNMLKEELKE   46 (325)
T ss_pred             HHHHHHHHhccC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            344444444432 247888999999999999999999998766

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.74  E-value=0.00026  Score=55.88  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      -.++++|+||+|||+++..++...
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            368999999999999999997664

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.74  E-value=0.00019  Score=65.59  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh--------hcccccCCCCchhHHHHHHhHHHH-HHhhh-hCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSRIHFPNENHVSLYRLQLTNWI-ISNVT-ACD  122 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~-~~~  122 (202)
                      .+++.|+||||||++++++.+.+..   .+....++-.        .+....+.....+..+-....... ..... ..+
T Consensus       340 ~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~  416 (720)
T TIGR01448       340 VVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID  416 (720)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence            5889999999999999999887654   2100000000        000000000000000000000000 00000 123


Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      .++||+||+..++......|++.+..+
T Consensus       417 ~~llIvDEaSMvd~~~~~~Ll~~~~~~  443 (720)
T TIGR01448       417 CDLLIVDESSMMDTWLALSLLAALPDH  443 (720)
T ss_pred             CCEEEEeccccCCHHHHHHHHHhCCCC
Confidence            589999999999999888888877654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.72  E-value=9.7e-05  Score=53.27  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          29 LAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +....+.+.+...+...      ..++|.|+.|+|||++++.+++.+..
T Consensus         6 ~~t~~l~~~l~~~l~~~------~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150         6 KAMDKFGKAFAKPLDFG------TVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHHHHHHHHHHhCCCC------CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            44455555555554322      26899999999999999999999644

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.72  E-value=0.00076  Score=49.28  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++|+|+||+|||++|+.+++.+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            5889999999999999999984

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK06696 uridine kinase; Validated

Probab=97.72  E-value=8.1e-05  Score=58.42  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=25.9

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..|+.+.+.|++|+||||+|+.|++.+..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36778999999999999999999999854

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.69  E-value=0.00013  Score=61.69  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|+||+|||+++..++..+..
T Consensus        84 lvLI~G~pG~GKStLllq~a~~~a~  108 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAK  108 (372)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999887644

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.69  E-value=8.1e-05  Score=59.46  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -.+++||+|+|||++++.+++.+..
T Consensus        18 r~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          18 RGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccc
Confidence            4899999999999999999988644

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=97.68  E-value=9.3e-05  Score=58.05  Aligned_cols=87  Identities=20%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK  133 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~  133 (202)
                      +++.|+||+|||++.+.+.... ..  -....+.................. ..   .............+.++|||+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~-~v---~s~~~~~~~~~~~~~liiDE~~~   73 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR-LV--VTVISPTIELYTEWLPDPPSKSVR-TV---DSFLKALVKPKSYDTLIIDEAQL   73 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc-cc--cccccccceeccccccccCCcccc-EE---eEhhhcccccCcCCEEEEecccc
Confidence            3689999999999999988872 00  000000000000000000000000 00   01111111112468999999999


Q ss_pred             CChhHHHHHHHhcc
Q psy1695         134 FPKGLLDVIIPFID  147 (202)
Q Consensus       134 ~~~~~~~~L~~~le  147 (202)
                      +++..+..|.....
T Consensus        74 ~~~g~l~~l~~~~~   87 (234)
T PF01443_consen   74 LPPGYLLLLLSLSP   87 (234)
T ss_pred             CChHHHHHHHhhcc
Confidence            99987777665544

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.67  E-value=0.00032  Score=52.34  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC--------CCCc----hhHHHHHHhHHHHHHhhhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF--------PNEN----HVSLYRLQLTNWIISNVTA  120 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~l~~~~~~~l~~  120 (202)
                      .+.+.||+|+|||++.+.++..+.+.  .|   . +.++...+..        ...+    ..+....  .-.+..++..
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~~--~G---~-v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~q--rl~laral~~   99 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKPD--SG---E-ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQ--MVEIARALAR   99 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC--Ce---E-EEECCEECCcCCHHHHHhcCeEEEEecCHHHHH--HHHHHHHHhc
Confidence            58899999999999999998875431  11   0 0000000000        0000    1111111  1223333433


Q ss_pred             CCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         121 CDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       121 ~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      . .+++++||- ..+++.....+.+++.+-.      .+...+|++|...
T Consensus       100 ~-p~illlDEP~~~LD~~~~~~l~~~l~~~~------~~~~tiii~sh~~  142 (163)
T cd03216         100 N-ARLLILDEPTAALTPAEVERLFKVIRRLR------AQGVAVIFISHRL  142 (163)
T ss_pred             C-CCEEEEECCCcCCCHHHHHHHHHHHHHHH------HCCCEEEEEeCCH
Confidence            3 479999999 4567777777777776531      0345566666543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.67  E-value=0.00032  Score=54.23  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+.++||||+|||+++..++.....
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~   38 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAAR   38 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999887644

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.66  E-value=0.001  Score=49.83  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||||+|||+++..++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~   26 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999998755

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.66  E-value=0.00027  Score=54.55  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhH
Q psy1695          32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLT  111 (202)
Q Consensus        32 ~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  111 (202)
                      ..+..++.+.. .|. -+...+++|.|+-|+|||++.+.|+...+.   ..         ..   ......   .    .
T Consensus        35 ~wl~~~Var~~-~pg-~k~d~~lvl~G~QG~GKStf~~~L~~~~~~---d~---------~~---~~~~kd---~----~   90 (198)
T PF05272_consen   35 KWLVGAVARAY-EPG-CKNDTVLVLVGKQGIGKSTFFRKLGPEYFS---DS---------IN---DFDDKD---F----L   90 (198)
T ss_pred             HHHHHHHHHHh-CCC-CcCceeeeEecCCcccHHHHHHHHhHHhcc---Cc---------cc---cCCCcH---H----H
Confidence            33444444433 332 223447899999999999999998655333   10         00   000000   0    1


Q ss_pred             HHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc------c--ccCCceEEEEeeCcC
Q psy1695         112 NWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN------Q--ISFQNTIFLFLSNSG  169 (202)
Q Consensus       112 ~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~------~--~~~~~~~~Iltsn~~  169 (202)
                      ..+.+      .-++-+||++.+.....+.|..++......-      .  .--++++||.|||..
T Consensus        91 ~~l~~------~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~  150 (198)
T PF05272_consen   91 EQLQG------KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD  150 (198)
T ss_pred             HHHHH------hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence            11111      1378899999999888888988887643221      1  134677888999863

>KOG2227|consensus

Probab=97.66  E-value=0.00016  Score=61.72  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ..+.|.+.-+..+...+..++...    .+.++.+.|-||||||.+...+-..+..   .+.....+.+++..+..+..-
T Consensus       150 ~~l~gRe~e~~~v~~F~~~hle~~----t~gSlYVsG~PGtgkt~~l~rvl~~~~~---~~~~~~~v~inc~sl~~~~ai  222 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLHLELN----TSGSLYVSGQPGTGKTALLSRVLDSLSK---SSKSPVTVYINCTSLTEASAI  222 (529)
T ss_pred             CCccchHHHHHHHHHHHHhhhhcc----cCcceEeeCCCCcchHHHHHHHHHhhhh---hcccceeEEEeeccccchHHH
Confidence            458899999999988888887654    4557899999999999988766555433   211111122222221111000


Q ss_pred             hhH---H---------HHHHhHHHHHHhhhhCC-ceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695         102 HVS---L---------YRLQLTNWIISNVTACD-RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       102 ~~~---~---------~~~~l~~~~~~~l~~~~-~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      +.+   .         ...+....+........ --|+|+||+|.+-..-+..|..+++-+.+    ..++.+.|.++|.
T Consensus       223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l----p~sr~iLiGiANs  298 (529)
T KOG2227|consen  223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL----PNSRIILIGIANS  298 (529)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC----Ccceeeeeeehhh
Confidence            000   0         01112233333333333 36788999999988777777777765432    2356666676665


Q ss_pred             C
Q psy1695         169 G  169 (202)
Q Consensus       169 ~  169 (202)
                      -
T Consensus       299 l  299 (529)
T KOG2227|consen  299 L  299 (529)
T ss_pred             h
Confidence            4

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.65  E-value=4.3e-05  Score=54.02  Aligned_cols=22  Identities=27%  Similarity=0.705  Sum_probs=20.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|+||||||++|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999995

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.65  E-value=4.3e-05  Score=57.35  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -++++||+|+||||+|+.|++.+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3789999999999999999999644

>PRK06762 hypothetical protein; Provisional

Probab=97.64  E-value=5.6e-05  Score=56.38  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      |..++++|+||+|||++|+.+++.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4468899999999999999999986

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.64  E-value=0.00064  Score=53.70  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||+|+|||+++..++..+.
T Consensus        26 ~~~i~G~~G~GKTtl~~~~~~~~~   49 (230)
T PRK08533         26 LILIEGDESTGKSILSQRLAYGFL   49 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999866655543

>PF13245 AAA_19: Part of AAA domain

Probab=97.62  E-value=0.0001  Score=47.95  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=17.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||||||||+++..++.++.
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            467799999999965555544444

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.61  E-value=0.00044  Score=57.84  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||++.+++...+..
T Consensus       124 ~ili~G~tGSGKTT~l~al~~~i~~  148 (343)
T TIGR01420       124 LILVTGPTGSGKSTTLASMIDYINK  148 (343)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCc
Confidence            5899999999999999999988653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.61  E-value=0.00036  Score=57.64  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||||+|||++|..++.....
T Consensus        57 iteI~G~~GsGKTtLaL~~~~~~~~   81 (321)
T TIGR02012        57 IIEIYGPESSGKTTLALHAIAEAQK   81 (321)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999887766543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.00032  Score=54.99  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=50.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-cccccC----CCCchhHHHHHH-----h-HHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-NSRIHF----PNENHVSLYRLQ-----L-TNWIISNV  118 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~-----l-~~~~~~~l  118 (202)
                      ..+..++.||||||||++.|-+|+.+...++.-......-++ .+.+.+    .+.-..+ -+.+     . ..-+..++
T Consensus       136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g-~R~dVld~cpk~~gmmmaI  214 (308)
T COG3854         136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRG-RRMDVLDPCPKAEGMMMAI  214 (308)
T ss_pred             CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhh-hhhhhcccchHHHHHHHHH
Confidence            345689999999999999999999975421110111111111 111111    0000000 0000     0 11233455


Q ss_pred             hhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         119 TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       119 ~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      ++-...|+|+|||.....  ..+++..++.|
T Consensus       215 rsm~PEViIvDEIGt~~d--~~A~~ta~~~G  243 (308)
T COG3854         215 RSMSPEVIIVDEIGTEED--ALAILTALHAG  243 (308)
T ss_pred             HhcCCcEEEEeccccHHH--HHHHHHHHhcC
Confidence            555668999999988764  34455666665

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.60  E-value=0.00016  Score=58.98  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=26.2

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.|+.+++.|++|+|||++|..||+.+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~  118 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGI  118 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47889999999999999999999999743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.59  E-value=0.00029  Score=55.67  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -+.+.||+||||||+-+.+|-...+
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999988655

>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1

Probab=97.59  E-value=0.0012  Score=53.94  Aligned_cols=115  Identities=13%  Similarity=0.201  Sum_probs=69.8

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF   91 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~   91 (202)
                      .++...+.+.+.+.|.....-.+..++...+...- ...+..+-|+|++++|||+++++.+.. +.   .+  .      
T Consensus       155 tle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-~~~~~~~hl~G~Ss~GKTt~~~~a~Sv-~G---~p--~------  221 (286)
T PF06048_consen  155 TLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-GVEGFGFHLYGQSSSGKTTALQLAASV-WG---NP--D------  221 (286)
T ss_pred             CHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-CCCceEEEEEeCCCCCHHHHHHHhhhh-Cc---Cc--h------
Confidence            56777787777788877766666555555433221 224557899999999999999887765 43   11  1      


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                        .+..+....        ...+.........-.++|||+..+.+.-...+.-.|.+|
T Consensus       222 --~l~~sw~~T--------~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG  269 (286)
T PF06048_consen  222 --GLIRSWNST--------DNGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANG  269 (286)
T ss_pred             --hhhhcchhh--------HHHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCC
Confidence              111111111        112222333344567889999999887666665555554

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.59  E-value=7.3e-05  Score=56.35  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=25.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|.|++|+|||++|+.+++.+..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5667999999999999999999999764

>PRK05439 pantothenate kinase; Provisional

Probab=97.59  E-value=0.00019  Score=59.00  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=25.7

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|..+.+.|+||+||||+|+.|+..+.
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45788899999999999999999999764

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=97.59  E-value=0.00047  Score=64.72  Aligned_cols=27  Identities=15%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +.+|||+||+..++......|++....
T Consensus       433 ~~~vlIVDEASMv~~~~m~~LL~~a~~  459 (988)
T PRK13889        433 SRDVLVIDEAGMVGTRQLERVLSHAAD  459 (988)
T ss_pred             cCcEEEEECcccCCHHHHHHHHHhhhh
Confidence            347999999999999888888776543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.59  E-value=0.0005  Score=51.40  Aligned_cols=101  Identities=9%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC---cc----chhhhhccccc---------C-CCCchhHHHHHHhHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TS----RFVHKFNSRIH---------F-PNENHVSLYRLQLTNWII  115 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---~~----~~~~~~~~~~~---------~-~~~~~~~~~~~~l~~~~~  115 (202)
                      .+.+.||+|+|||++++.++..+...  .|.   ..    .++.... .+.         . ......+....  +-.+.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~~-~~~~~tv~~nl~~~~~~~LS~G~~~--rv~la  103 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQRP-YLPLGTLREQLIYPWDDVLSGGEQQ--RLAFA  103 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCCC-ccccccHHHHhhccCCCCCCHHHHH--HHHHH
Confidence            58899999999999999999875432  110   00    0000000 000         0 00111111111  11233


Q ss_pred             HhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695         116 SNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       116 ~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      .++.. +.+++++||- ..+++.....+.+++.+.         ...+|++|..
T Consensus       104 ral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~---------~~tiiivsh~  147 (166)
T cd03223         104 RLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL---------GITVISVGHR  147 (166)
T ss_pred             HHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh---------CCEEEEEeCC
Confidence            33333 3479999999 466778888888888762         2455566654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK08233 hypothetical protein; Provisional

Probab=97.59  E-value=7.1e-05  Score=56.39  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+.+.|+||+||||+|+.|+..+.
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            345788999999999999999999864

>PRK13695 putative NTPase; Provisional

Probab=97.58  E-value=0.00043  Score=52.07  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -++|+|++|+|||+++..++..+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999988764

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.58  E-value=0.00019  Score=58.54  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.5

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|..+.+.||+|+||||+|+.+...+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45788899999999999999999988765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.58  E-value=0.00047  Score=52.07  Aligned_cols=106  Identities=10%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC----ccchh------hhhcccccCCCCc----hhHH-------HHHHhH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----TSRFV------HKFNSRIHFPNEN----HVSL-------YRLQLT  111 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----~~~~~------~~~~~~~~~~~~~----~~~~-------~~~~l~  111 (202)
                      .+.+.||+|+|||++++.++..+...  .|.    ..+..      .... .+.+..+.    .+..       ..+...
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~i~~~LS~G~~qr  106 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDLEKALSSLI-SVLNQRPYLFDTTLRNNLGRRFSGGERQR  106 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHHHHHHHHHhhE-EEEccCCeeecccHHHhhcccCCHHHHHH
Confidence            58899999999999999999875442  110    00100      0000 11111110    0000       001101


Q ss_pred             HHHHHhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         112 NWIISNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       112 ~~~~~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      -.+..++.. +.+++++||. ..+++...+.+++++.+-.       ++..+|++|...
T Consensus       107 v~laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-------~~~tii~~sh~~  157 (178)
T cd03247         107 LALARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVL-------KDKTLIWITHHL  157 (178)
T ss_pred             HHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHc-------CCCEEEEEecCH
Confidence            123333333 3489999999 5667777888888877532       345566666544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.58  E-value=8.2e-05  Score=57.87  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..++.||||||||+++..++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            47899999999998887777776

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.58  E-value=8.2e-05  Score=47.36  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+.|++|+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.57  E-value=0.00057  Score=51.28  Aligned_cols=108  Identities=12%  Similarity=0.102  Sum_probs=57.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC----ccchhhh------hcccccCCCCc----hhHH----HHHHhHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG----TSRFVHK------FNSRIHFPNEN----HVSL----YRLQLTNWI  114 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~----~~~~~~~------~~~~~~~~~~~----~~~~----~~~~l~~~~  114 (202)
                      .+.+.||+|+|||++.+.++..+...  .|.    ..+....      ....+.+..+.    .+..    ..+...-.+
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l  107 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI  107 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence            58899999999999999999886442  110    0010000      00001111111    1100    011001122


Q ss_pred             HHhhhhCCceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         115 ISNVTACDRAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       115 ~~~l~~~~~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ..++.. +.+++++||- .-+++.....+.+++.+-.       .+..+|++|....
T Consensus       108 a~al~~-~p~llllDEP~~gLD~~~~~~l~~~l~~~~-------~~~tii~~sh~~~  156 (171)
T cd03228         108 ARALLR-DPPILILDEATSALDPETEALILEALRALA-------KGKTVIVIAHRLS  156 (171)
T ss_pred             HHHHhc-CCCEEEEECCCcCCCHHHHHHHHHHHHHhc-------CCCEEEEEecCHH
Confidence            333333 3479999998 5667777778888777532       2356677776543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.57  E-value=0.00024  Score=56.02  Aligned_cols=43  Identities=16%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        32 ~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+.+.+..+...   ..+|..+.+.||+|+|||++++.++..+..
T Consensus        17 ~~l~~~~~~~~~~---~~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         17 KPLLRRLAALQAE---PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             HHHHHHHHHHHhc---CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3334444444433   236778999999999999999999999765

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.56  E-value=9.4e-05  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+|..+.+.|++|+||||+++.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999999987

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.55  E-value=0.00054  Score=50.59  Aligned_cols=105  Identities=11%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC---cc-chhh---hhc-ccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG---TS-RFVH---KFN-SRIHFPNENHVSLYRLQLTNWIISNVTACDRA  124 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~---~~-~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  124 (202)
                      .+.+.||+|+|||++.++++..+...  .|.   .. ....   ... ........ ..+....  .-.+..++... .+
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~~~~~~~~~~~~~~~i~~~~q-lS~G~~~--r~~l~~~l~~~-~~  100 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKDIAKLPLEELRRRIGYVPQ-LSGGQRQ--RVALARALLLN-PD  100 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEcccCCHHHHHhceEEEee-CCHHHHH--HHHHHHHHhcC-CC
Confidence            58899999999999999998875431  110   00 0000   000 00000000 1111111  22333334333 47


Q ss_pred             EEEEecCC-CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         125 IFIFDEVD-KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       125 viiiDEid-~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ++++||.. .++......+.+++..-.     . .+..+|++|...
T Consensus       101 i~ilDEp~~~lD~~~~~~l~~~l~~~~-----~-~~~tii~~sh~~  140 (157)
T cd00267         101 LLLLDEPTSGLDPASRERLLELLRELA-----E-EGRTVIIVTHDP  140 (157)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHH-----H-CCCEEEEEeCCH
Confidence            99999994 667777777777776532     0 234566666553

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.55  E-value=0.0024  Score=49.07  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=25.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..+.|+|++|+|||++|+.++..+..
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~   50 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHE   50 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6768999999999999999999998865

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.55  E-value=0.00071  Score=53.67  Aligned_cols=95  Identities=13%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCc--C------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCc-
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDK--G------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDR-  123 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-  123 (202)
                      .+.++|+.|+|||.+.|++...+.......  .      ...+....+..+...+...+...-+++...+.+.+....+ 
T Consensus        53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~  132 (269)
T COG3267          53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP  132 (269)
T ss_pred             eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999997777654411000  0      0111111222222222222221223334556666666666 


Q ss_pred             eEEEEecCCCCChhHHHHHHHhcc
Q psy1695         124 AIFIFDEVDKFPKGLLDVIIPFID  147 (202)
Q Consensus       124 ~viiiDEid~~~~~~~~~L~~~le  147 (202)
                      .++++||++.+..++...|.-+.+
T Consensus       133 v~l~vdEah~L~~~~le~Lrll~n  156 (269)
T COG3267         133 VVLMVDEAHDLNDSALEALRLLTN  156 (269)
T ss_pred             eEEeehhHhhhChhHHHHHHHHHh
Confidence            788999999999988777665543

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.55  E-value=0.00022  Score=61.72  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++|+||+|||+++..++..+.
T Consensus        82 ~~lI~G~pG~GKTtL~lq~a~~~a  105 (446)
T PRK11823         82 VVLIGGDPGIGKSTLLLQVAARLA  105 (446)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999988764

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.55  E-value=0.00038  Score=59.39  Aligned_cols=83  Identities=12%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      ..++.||-+||||++.+.+.+.+..        ..+.++..+........    .+ ......+.... ....++||||+
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~--------~~iy~~~~d~~~~~~~l----~d-~~~~~~~~~~~-~~~yifLDEIq  104 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLE--------EIIYINFDDLRLDRIEL----LD-LLRAYIELKER-EKSYIFLDEIQ  104 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCc--------ceEEEEecchhcchhhH----HH-HHHHHHHhhcc-CCceEEEeccc
Confidence            7899999999999999887777433        12222222211111000    00 01111111111 34689999999


Q ss_pred             CCChhHHHHHHHhcccCc
Q psy1695         133 KFPKGLLDVIIPFIDHHA  150 (202)
Q Consensus       133 ~~~~~~~~~L~~~le~~~  150 (202)
                      ..+. ....|..+.+.+.
T Consensus       105 ~v~~-W~~~lk~l~d~~~  121 (398)
T COG1373         105 NVPD-WERALKYLYDRGN  121 (398)
T ss_pred             Cchh-HHHHHHHHHcccc
Confidence            9885 6677777888764

>PRK03839 putative kinase; Provisional

Probab=97.54  E-value=7.5e-05  Score=56.49  Aligned_cols=24  Identities=29%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.|+||+||||+++.+|+.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999863

>PF13479 AAA_24: AAA domain

Probab=97.54  E-value=7.5e-05  Score=58.25  Aligned_cols=25  Identities=28%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +|+-++++||||+|||++|..+-+.
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~~k~   26 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASLPKP   26 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhCCCe
Confidence            5667999999999999999887443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.54  E-value=0.0022  Score=53.31  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|+.+.+.|+||+|||+++..+...+..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~   82 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIE   82 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999998765

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.53  E-value=0.0009  Score=50.63  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+|||++.+.++..+.+
T Consensus        27 ~~~l~G~nGsGKStLl~~i~G~~~~   51 (180)
T cd03214          27 IVGILGPNGAGKSTLLKTLAGLLKP   51 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5889999999999999999887543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.53  E-value=0.0025  Score=55.52  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..++|+||+|+||||++..||..+.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~  281 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCV  281 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHH
Confidence            344699999999999999999998764

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.53  E-value=0.0023  Score=49.27  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+|..+++.|+||+|||+++..+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            578889999999999999999998875

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK06547 hypothetical protein; Provisional

Probab=97.53  E-value=0.00011  Score=55.35  Aligned_cols=26  Identities=15%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..+++.|++|+|||++|+.+++.+
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            56678899999999999999999984

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.52  E-value=0.0021  Score=54.37  Aligned_cols=51  Identities=6%  Similarity=0.123  Sum_probs=32.7

Q ss_pred             ceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         123 RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       123 ~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                      +++|++|-+.+-+.+  ....|..+++...      .-+..+++.+|.-.+.+.+.+-+
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~------~i~~~Lvlsat~K~~dlkei~~~  334 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSH------SIEVYLVLSATTKYEDLKEIIKQ  334 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccc------cceEEEEEecCcchHHHHHHHHH
Confidence            389999999887654  3445666655431      14556677777777766665543

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.51  E-value=0.00053  Score=55.81  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          28 ELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        28 ~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+.+.+.+.+...+.....    ...+..++|+||+|+|||+++..+|..+..
T Consensus       167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~  220 (282)
T TIGR03499       167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVL  220 (282)
T ss_pred             HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44556666666665532110    124557899999999999999999988654

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=97.51  E-value=0.00097  Score=59.59  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      +.++||+||+..++......|++.+..+
T Consensus       259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~  286 (586)
T TIGR01447       259 PLDVLVVDEASMVDLPLMAKLLKALPPN  286 (586)
T ss_pred             cccEEEEcccccCCHHHHHHHHHhcCCC
Confidence            3489999999999999888888877653

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.51  E-value=0.00059  Score=53.45  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ....+++||||+|||+++..++.....
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~   49 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAK   49 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            336899999999999999999987544

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.51  E-value=0.00092  Score=51.59  Aligned_cols=23  Identities=17%  Similarity=0.102  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||.|+|||++.+.++...
T Consensus        31 ~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          31 LLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             EEEEECCCCCccHHHHHHHHHHH
Confidence            58999999999999999999543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.51  E-value=0.00091  Score=53.76  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||||+|||+++..++...
T Consensus        38 ~~lI~G~pGtGKT~l~~qf~~~~   60 (259)
T TIGR03878        38 VINITGVSDTGKSLMVEQFAVTQ   60 (259)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999887764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>KOG0922|consensus

Probab=97.51  E-value=0.0009  Score=59.29  Aligned_cols=51  Identities=10%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             CCceEEEEecCCCCCh--hHH-HHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         121 CDRAIFIFDEVDKFPK--GLL-DVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       121 ~~~~viiiDEid~~~~--~~~-~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      ..++||||||++.=+-  +++ -.|.+++.+..       .=.++|+.+++..+.+.+++.
T Consensus       162 skYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-------~LklIimSATlda~kfS~yF~  215 (674)
T KOG0922|consen  162 SKYSVIILDEAHERSLHTDILLGLLKKILKKRP-------DLKLIIMSATLDAEKFSEYFN  215 (674)
T ss_pred             ccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-------CceEEEEeeeecHHHHHHHhc
Confidence            3569999999965432  333 33334444432       224555666666666666544

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.51  E-value=8.5e-05  Score=56.20  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++++||||+|||++|+.||+.+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6899999999999999999985

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PTZ00202 tuzin; Provisional

Probab=97.50  E-value=0.00072  Score=58.02  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.+.....+...+...-     ...|....++||+|+|||++++.++..+
T Consensus       263 ~FVGReaEla~Lr~VL~~~d-----~~~privvLtG~~G~GKTTLlR~~~~~l  310 (550)
T PTZ00202        263 QFVSREAEESWVRQVLRRLD-----TAHPRIVVFTGFRGCGKSSLCRSAVRKE  310 (550)
T ss_pred             CCCCcHHHHHHHHHHHhccC-----CCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence            57888888888877665421     1234468899999999999999998775

>PLN02200 adenylate kinase family protein

Probab=97.49  E-value=0.00012  Score=57.92  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.|..+++.||||+|||++|+.|++.+
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            356678999999999999999999984

>KOG2383|consensus

Probab=97.49  E-value=0.00029  Score=59.12  Aligned_cols=119  Identities=13%  Similarity=0.178  Sum_probs=61.4

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh--cc-------ccc---C-CCCchhHHHHHHhHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF--NS-------RIH---F-PNENHVSLYRLQLTNWII  115 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~-------~~~---~-~~~~~~~~~~~~l~~~~~  115 (202)
                      +.|.++.++|..|||||.|...+...+.+.+++    .-++.+  |.       .+.   + ..+++...+.-+....+.
T Consensus       112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rk----qRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA  187 (467)
T KOG2383|consen  112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRK----QRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVA  187 (467)
T ss_pred             CCCceEEEecccCcchhHHHHHHhhcCCchhhh----hhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHH
Confidence            347789999999999999999987664442111    111111  10       000   0 001111000000011122


Q ss_pred             HhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         116 SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       116 ~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      +.+.. ...++-|||++--+-.-.-.|.++++.=      -...++++.|||..++.+-+..+
T Consensus       188 ~eIa~-ea~lLCFDEfQVTDVADAmiL~rLf~~L------f~~GvVlvATSNR~P~dLYknGl  243 (467)
T KOG2383|consen  188 DEIAE-EAILLCFDEFQVTDVADAMILKRLFEHL------FKNGVVLVATSNRAPEDLYKNGL  243 (467)
T ss_pred             HHHhh-hceeeeechhhhhhHHHHHHHHHHHHHH------HhCCeEEEEeCCCChHHHhhcch
Confidence            22221 1368889999766554333444444431      01467888999999987765544

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.49  E-value=0.0012  Score=48.10  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++|.||+|+|||+|+++|-..
T Consensus         4 imliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    4 IMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            689999999999999998654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.49  E-value=0.00037  Score=61.77  Aligned_cols=40  Identities=8%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             ceEEEEecC-CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         123 RAIFIFDEV-DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       123 ~~viiiDEi-d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+++|+||+ ..++++..+.|.+++.+.-       ..+++|-++-..
T Consensus       534 P~~v~LDEATsALDe~~e~~l~q~l~~~l-------p~~tvISV~Hr~  574 (604)
T COG4178         534 PKWVFLDEATSALDEETEDRLYQLLKEEL-------PDATVISVGHRP  574 (604)
T ss_pred             CCEEEEecchhccChHHHHHHHHHHHhhC-------CCCEEEEeccch
Confidence            478999999 7788899999999998832       566777666443

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.49  E-value=0.00039  Score=56.02  Aligned_cols=88  Identities=16%  Similarity=0.264  Sum_probs=45.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-hcccccCCCCchhH---H-HHHHhHHHHHHhhhhCCceEEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPNENHVS---L-YRLQLTNWIISNVTACDRAIFI  127 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~l~~~~~~~l~~~~~~vii  127 (202)
                      .+++.||+|+|||++.+++...+..   ..  ..++.+ +..++..+.+....   . -...+...+...++.. .++++
T Consensus       129 ~ili~G~tGSGKTT~l~all~~i~~---~~--~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~-pD~ii  202 (270)
T PF00437_consen  129 NILISGPTGSGKTTLLNALLEEIPP---ED--ERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQD-PDVII  202 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHCHT---TT--SEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEE
T ss_pred             EEEEECCCccccchHHHHHhhhccc---cc--cceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCC-CCccc
Confidence            6999999999999999999998655   20  111111 01111111100000   0 0001123344445544 47899


Q ss_pred             EecCCCCChhHHHHHHHhcccC
Q psy1695         128 FDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       128 iDEid~~~~~~~~~L~~~le~~  149 (202)
                      +.|+-..  ++... ++.+..|
T Consensus       203 igEiR~~--e~~~~-~~a~~tG  221 (270)
T PF00437_consen  203 IGEIRDP--EAAEA-IQAANTG  221 (270)
T ss_dssp             ESCE-SC--HHHHH-HHHHHTT
T ss_pred             ccccCCH--hHHHH-HHhhccC
Confidence            9999754  45555 6677765

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.48  E-value=0.00074  Score=50.76  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+|||++.+.++..+.+
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~~~   54 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLLRP   54 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCC
Confidence            5889999999999999999987544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.48  E-value=0.0013  Score=51.06  Aligned_cols=22  Identities=18%  Similarity=0.030  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||+|+|||++.+.++..
T Consensus        31 ~~~l~G~n~~GKstll~~i~~~   52 (204)
T cd03282          31 FHIITGPNMSGKSTYLKQIALL   52 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.48  E-value=0.00084  Score=55.57  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...++||||+|||++|..++.....
T Consensus        57 iteI~Gp~GsGKTtLal~~~~~~~~   81 (325)
T cd00983          57 IIEIYGPESSGKTTLALHAIAEAQK   81 (325)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999988766543

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.47  E-value=8e-05  Score=55.35  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||+|+|||++|+.+++.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            3688999999999999999985

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.47  E-value=0.00045  Score=55.87  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++|-||+|||++|+.|++.+..
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHh
Confidence            789999999999999999999765

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK07261 topology modulation protein; Provisional

Probab=97.46  E-value=0.00011  Score=55.42  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++++|+||+||||+|+.+++.+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999885

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.46  E-value=0.0077  Score=55.16  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +-.++|+||+|+||||++..||..+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~  209 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARC  209 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhH
Confidence            4478999999999999999999875

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.45  E-value=0.00049  Score=55.65  Aligned_cols=26  Identities=15%  Similarity=0.142  Sum_probs=23.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++.||+|+|||++.+.++..+..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            47899999999999999999998755

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.45  E-value=0.00012  Score=53.56  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++++|++|+|||++|+.+|+.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999985

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.44  E-value=0.0018  Score=50.04  Aligned_cols=23  Identities=22%  Similarity=0.223  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||+|+|||++.+.++...
T Consensus        27 ~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999998654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR00767 rho transcription termination factor Rho

Probab=97.44  E-value=0.00045  Score=58.57  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||+|+|||++++.+++.+..
T Consensus       170 ~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       170 RGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             EEEEECCCCCChhHHHHHHHHhhcc
Confidence            3889999999999999999998644

Members of this family differ in the specificity of RNA binding.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.43  E-value=0.00013  Score=55.42  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||||+||||+|+.||+.+
T Consensus         3 iiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999994

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.43  E-value=0.0031  Score=50.97  Aligned_cols=113  Identities=14%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-------------cccccCCCCchhHHHHHHhHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------------NSRIHFPNENHVSLYRLQLTNWIISNV  118 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~l  118 (202)
                      -.++|.||+|+|||++++.++..+..   .+....++..+             ...+..+... .. ....+...+.. +
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~-~~-~~~~l~~~l~~-l  149 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA-VR-DEAAMTRALTY-F  149 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEe-cC-CHHHHHHHHHH-H
Confidence            36899999999999999999988754   22111111110             0111111000 00 01112222222 2


Q ss_pred             hh-CCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         119 TA-CDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       119 ~~-~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      .. ...++++||...+.+.  .....|.++++...      -..+++++.++...+.+.+.
T Consensus       150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~------~~~~~LVl~a~~~~~d~~~~  204 (270)
T PRK06731        150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEI  204 (270)
T ss_pred             HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC------CCeEEEEEcCccCHHHHHHH
Confidence            22 3569999999999863  45666666655321      13456666666666555443

>PRK14532 adenylate kinase; Provisional

Probab=97.42  E-value=0.00012  Score=55.68  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.||||+|||++|+.||+.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999999985

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.42  E-value=0.00016  Score=54.53  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.|+||+|||++|+.+++.+.
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            589999999999999999999853

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=97.42  E-value=0.0011  Score=59.51  Aligned_cols=27  Identities=15%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      .+++|+||+...+......|++.+..+
T Consensus       266 ~dvlIvDEaSMvd~~lm~~ll~al~~~  292 (615)
T PRK10875        266 LDVLVVDEASMVDLPMMARLIDALPPH  292 (615)
T ss_pred             CCeEEEChHhcccHHHHHHHHHhcccC
Confidence            389999999999999888888887653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.40  E-value=0.00014  Score=55.06  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.||||+|||++++.+++.+
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.40  E-value=0.00017  Score=56.92  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|+-+++.||||+|||++|+.||+.+
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45568999999999999999999985

>PHA02624 large T antigen; Provisional

Probab=97.40  E-value=0.00034  Score=61.97  Aligned_cols=26  Identities=12%  Similarity=0.034  Sum_probs=23.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++|+||+|||||+++.+|.+.+.+
T Consensus       432 ~~il~~GPpnTGKTtf~~sLl~~L~G  457 (647)
T PHA02624        432 RYWLFKGPVNSGKTTLAAALLDLCGG  457 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            37999999999999999999999744

>PRK13947 shikimate kinase; Provisional

Probab=97.39  E-value=0.00016  Score=54.07  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.|+||+|||++|+.+|+.+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999863

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.39  E-value=0.00043  Score=67.26  Aligned_cols=89  Identities=17%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcC------ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEE
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKG------TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIF  126 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vi  126 (202)
                      +++|.|.||+|||++..++|+....   +-.      ..+.+..+.+.+.....+.+. |.+   ..+..+++.+  .-+
T Consensus      1545 pilLEGsPGVGKTSlItaLAr~tG~---kliRINLSeQTdL~DLfGsd~Pve~~Gef~-w~d---apfL~amr~G--~WV 1615 (4600)
T COG5271        1545 PILLEGSPGVGKTSLITALARKTGK---KLIRINLSEQTDLCDLFGSDLPVEEGGEFR-WMD---APFLHAMRDG--GWV 1615 (4600)
T ss_pred             ceeecCCCCccHHHHHHHHHHHhcC---ceEEeeccccchHHHHhCCCCCcccCceeE-ecc---cHHHHHhhcC--CEE
Confidence            4799999999999999999998432   100      112222223333222222222 322   1222334443  468


Q ss_pred             EEecCCCCChhHHHHHHHhcccCc
Q psy1695         127 IFDEVDKFPKGLLDVIIPFIDHHA  150 (202)
Q Consensus       127 iiDEid~~~~~~~~~L~~~le~~~  150 (202)
                      ++||++.++..++..|...|+...
T Consensus      1616 lLDEiNLaSQSVlEGLNacLDhR~ 1639 (4600)
T COG5271        1616 LLDEINLASQSVLEGLNACLDHRR 1639 (4600)
T ss_pred             EeehhhhhHHHHHHHHHHHHhhcc
Confidence            899999999999999999998643

>PHA01747 putative ATP-dependent protease

Probab=97.39  E-value=0.0011  Score=55.25  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEE
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI  127 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vii  127 (202)
                      .+.+.+++=.||.|||||++-+.+.....-.. .|-.......+.. ......+.+                 +.+++|+
T Consensus       187 ~~~NyNliELgPRGTGKS~~f~eis~fsp~~i-SGG~~TvA~LFyN-~~t~~~GLV-----------------g~~D~Va  247 (425)
T PHA01747        187 SKRPVHIIELSNRGTGKTTTFVILQELFNFRY-YTEPPTYANLVYD-AKTNALGLV-----------------FLSNGLI  247 (425)
T ss_pred             CCCCeeEEEecCCCCChhhHHHHhhhcCCcee-eCCCCchHHheEe-cCCCceeEE-----------------eeccEEE
Confidence            34566788889999999999988755210000 0000000000000 000001111                 1247899


Q ss_pred             EecCCCCC----hhHHHHHHHhcccCccccccc--C------CceEEEEeeCcC
Q psy1695         128 FDEVDKFP----KGLLDVIIPFIDHHAVYNQIS--F------QNTIFLFLSNSG  169 (202)
Q Consensus       128 iDEid~~~----~~~~~~L~~~le~~~~~~~~~--~------~~~~~Iltsn~~  169 (202)
                      |||+....    .++.+.|...|+.|.+.++..  .      ..+.+|+.-|..
T Consensus       248 FDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin  301 (425)
T PHA01747        248 FDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD  301 (425)
T ss_pred             EEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence            99998765    467888888899998877642  2      267888888876

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=97.39  E-value=0.00095  Score=63.21  Aligned_cols=88  Identities=13%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh--------hcccccCCCCchhHHHHHHhHHHHHHhhhhCCce
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK--------FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRA  124 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  124 (202)
                      ..++.|++|||||++.+.+.+.+..   .|.  .++-.        .+....+.....+..+.   ...-...-.-.+..
T Consensus       399 ~~~v~G~AGTGKTt~l~~~~~~~e~---~G~--~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~  470 (1102)
T PRK13826        399 IAAVVGRAGAGKTTMMKAAREAWEA---AGY--RVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKT  470 (1102)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH---cCC--eEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCc
Confidence            5789999999999999999887544   221  01000        00000000000111000   00000000011247


Q ss_pred             EEEEecCCCCChhHHHHHHHhccc
Q psy1695         125 IFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       125 viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      ||||||+..++......|++..+.
T Consensus       471 vlVIDEAsMv~~~~m~~Ll~~~~~  494 (1102)
T PRK13826        471 VFVLDEAGMVASRQMALFVEAVTR  494 (1102)
T ss_pred             EEEEECcccCCHHHHHHHHHHHHh
Confidence            999999999999888888888764

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.39  E-value=0.0039  Score=50.26  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||++.+++...+..
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCC
Confidence            4899999999999999999887643

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.38  E-value=0.0022  Score=48.79  Aligned_cols=21  Identities=14%  Similarity=0.034  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++++||.|.|||++.+.++..
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~   22 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLI   22 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999999854

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=97.38  E-value=0.0016  Score=62.51  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=14.9

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~   69 (202)
                      +++++|+||+|||+..=
T Consensus        84 vvii~g~TGSGKTTqlP  100 (1283)
T TIGR01967        84 VVIIAGETGSGKTTQLP  100 (1283)
T ss_pred             eEEEeCCCCCCcHHHHH
Confidence            68999999999999653

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.38  E-value=0.0024  Score=49.22  Aligned_cols=21  Identities=14%  Similarity=0.173  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .++|+||.|+|||++.+.++.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            589999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=97.38  E-value=0.00053  Score=51.39  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=17.3

Q ss_pred             EEEEecCCCCcHHHHH-HHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVT-DFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la-~~la~~l   75 (202)
                      .+++.||+|+|||..+ ..+.+.+
T Consensus        26 ~~~i~~~~GsGKT~~~~~~~~~~~   49 (201)
T smart00487       26 DVILAAPTGSGKTLAALLPALEAL   49 (201)
T ss_pred             cEEEECCCCCchhHHHHHHHHHHh
Confidence            6799999999999944 4444443

>PRK04040 adenylate kinase; Provisional

Probab=97.38  E-value=0.00019  Score=54.99  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=22.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      |..++++|+||+|||++++.+++.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            4468999999999999999999997

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.38  E-value=0.0013  Score=55.49  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+|||++.+++.+++..
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~  175 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGE  175 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998753

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR00235 udk uridine kinase

Probab=97.37  E-value=0.00022  Score=55.23  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+.+.||+|+||||++++++..+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455688999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.36  E-value=0.00077  Score=58.13  Aligned_cols=28  Identities=18%  Similarity=0.390  Sum_probs=25.3

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+|..+++.|++|+|||++|..+|..+.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg  280 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLG  280 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3688899999999999999999999964

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00021  Score=55.39  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.+|..++|+||+|+|||++++.+.+.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            346777899999999999999999764

>PRK14531 adenylate kinase; Provisional

Probab=97.36  E-value=0.00018  Score=54.70  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||||+|||++++.||+.+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

>PRK00625 shikimate kinase; Provisional

Probab=97.35  E-value=0.00019  Score=54.26  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|+|.||+|||++++.+|+.+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999863

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.35  E-value=0.0051  Score=46.61  Aligned_cols=28  Identities=25%  Similarity=0.490  Sum_probs=24.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..+.+.|++|+|||++|+.++..+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~   44 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLES   44 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5557999999999999999999999754

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14530 adenylate kinase; Provisional

Probab=97.34  E-value=0.00018  Score=56.08  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||||+|||++|+.||+.+.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999853

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.34  E-value=0.00091  Score=50.28  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+|||++.+.++..+.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            588999999999999999988753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.33  E-value=0.0009  Score=55.08  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=23.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .|..+++.||+|+|||++|..||+.+.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~   29 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLN   29 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCC
Confidence            345789999999999999999999863

>KOG0479|consensus

Probab=97.33  E-value=0.0014  Score=57.54  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=86.4

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhH----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcc---ccCcCcc
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHF----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKR---YKDKGTS   85 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~---~~~~~~~   85 (202)
                      ++-|...|-..+.|++.+++.+.-.+....    .+..+-+.-..+|++|.|-|.||-|.|.+-+.....   ++.|  +
T Consensus       292 FdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRG--S  369 (818)
T KOG0479|consen  292 FDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRG--S  369 (818)
T ss_pred             HHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCC--C
Confidence            556667778889999999998877776532    222111112359999999999999999887763210   0011  1


Q ss_pred             chhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc------ccCCc
Q psy1695          86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ------ISFQN  159 (202)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~------~~~~~  159 (202)
                      .-+....+  ...+. ..|   +  .+--.+++--+..+|+-|||+|||+.--.-++..+||.+.++..      .=...
T Consensus       370 SGVGLTAA--VTtD~-eTG---E--RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNAR  441 (818)
T KOG0479|consen  370 SGVGLTAA--VTTDQ-ETG---E--RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNAR  441 (818)
T ss_pred             CCccceeE--Eeecc-ccc---h--hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccc
Confidence            00111000  00011 111   1  11111233334568999999999998878889999999876532      12345


Q ss_pred             eEEEEeeCc
Q psy1695         160 TIFLFLSNS  168 (202)
Q Consensus       160 ~~~Iltsn~  168 (202)
                      +.++..+|.
T Consensus       442 CSVlAAANP  450 (818)
T KOG0479|consen  442 CSVLAAANP  450 (818)
T ss_pred             eeeeeecCc
Confidence            666666664

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.32  E-value=0.0022  Score=47.69  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |...+++||.|+|||++.++++-.+..
T Consensus        21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~   47 (162)
T cd03227          21 GSLTIITGPNGSGKSTILDAIGLALGG   47 (162)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            336899999999999999998777654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.31  E-value=0.00042  Score=54.36  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+++.||||+|||.++..++...
T Consensus        20 s~~li~G~~GsGKT~l~~q~l~~~   43 (226)
T PF06745_consen   20 SVVLISGPPGSGKTTLALQFLYNG   43 (226)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHh
Confidence            369999999999999998777553

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK06217 hypothetical protein; Validated

Probab=97.31  E-value=0.0002  Score=54.36  Aligned_cols=24  Identities=17%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -+++.|++|+|||++|+.|++.+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999999863

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.30  E-value=0.0017  Score=51.49  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..+++.||||+|||++|..++..
T Consensus        22 s~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        22 NVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999877665

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK09354 recA recombinase A; Provisional

Probab=97.30  E-value=0.0018  Score=54.13  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ...++||+|+|||+++..++....
T Consensus        62 IteI~G~~GsGKTtLal~~~~~~~   85 (349)
T PRK09354         62 IVEIYGPESSGKTTLALHAIAEAQ   85 (349)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999988776643

>PRK07667 uridine kinase; Provisional

Probab=97.30  E-value=0.00042  Score=53.18  Aligned_cols=28  Identities=14%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++.+.+.|++|+|||++|+.|++.+..
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~   43 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQ   43 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4467899999999999999999999754

>PRK02496 adk adenylate kinase; Provisional

Probab=97.29  E-value=0.00023  Score=54.02  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      -+++.||||+|||++|+.|++.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999985

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.29  E-value=0.00022  Score=54.34  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||||+|||++|+.||+.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6899999999999999999984

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.29  E-value=0.00071  Score=55.80  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..++|+|++|+|||++++.+|+.+.
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg  158 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLG  158 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            445799999999999999999999863

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.29  E-value=0.00023  Score=53.74  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||+|+|||++++.|+..+.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999854

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.28  E-value=0.00035  Score=52.55  Aligned_cols=28  Identities=18%  Similarity=0.463  Sum_probs=24.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+-.+.|.|++|+|||++|+.++..+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3446899999999999999999999754

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.28  E-value=0.00025  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+.|+||+|||++|+.|++.+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999985

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=97.28  E-value=0.003  Score=60.68  Aligned_cols=16  Identities=25%  Similarity=0.418  Sum_probs=14.1

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      +++++|++|||||+..
T Consensus        91 VviI~GeTGSGKTTql  106 (1294)
T PRK11131         91 VVIVAGETGSGKTTQL  106 (1294)
T ss_pred             eEEEECCCCCCHHHHH
Confidence            6889999999999953

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.28  E-value=0.0013  Score=56.96  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=23.9

Q ss_pred             CceE-EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALA-ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~-~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|.+ +|++||+|+|||++..++.+.++.
T Consensus       256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~  284 (500)
T COG2804         256 RPQGLILVTGPTGSGKTTTLYAALSELNT  284 (500)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence            4445 889999999999999999888766

>PRK13949 shikimate kinase; Provisional

Probab=97.28  E-value=0.00024  Score=53.40  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++|++|+|||++++.+|+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~   27 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGL   27 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4789999999999999999998643

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=97.28  E-value=0.0023  Score=59.14  Aligned_cols=52  Identities=10%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             CCceEEEEecCCCCChh--H-HHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHH
Q psy1695         121 CDRAIFIFDEVDKFPKG--L-LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFL  178 (202)
Q Consensus       121 ~~~~viiiDEid~~~~~--~-~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~  178 (202)
                      ..+++|||||++.=+-+  . +..|.+++...+    .  .=.++|+.+++..+.+.+.+.
T Consensus       161 s~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----~--DLKiIimSATld~~rfs~~f~  215 (845)
T COG1643         161 SGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----D--DLKLIIMSATLDAERFSAYFG  215 (845)
T ss_pred             ccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC----C--CceEEEEecccCHHHHHHHcC
Confidence            34699999999755432  2 222333333322    0  134556666777777766654

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.27  E-value=0.00084  Score=50.50  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=19.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|+|||++|..++..
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~   22 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE   22 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999876

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.27  E-value=0.00026  Score=57.89  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+++.|+||+|||++|+.+++.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            368899999999999999999985

>PRK12338 hypothetical protein; Provisional

Probab=97.27  E-value=0.00031  Score=57.90  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +|..+++.|+||+|||++|+.+|+.+.
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~   29 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLN   29 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence            677899999999999999999999963

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.26  E-value=0.00042  Score=43.05  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+|+||+|+|||++..++.-.|++
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5899999999999999999999877

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.26  E-value=0.002  Score=50.46  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.|+||+|||+++..++....
T Consensus        18 ~~li~G~~G~GKt~~~~~~~~~~~   41 (224)
T TIGR03880        18 VIVVIGEYGTGKTTFSLQFLYQGL   41 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999988877643

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.25  E-value=0.0006  Score=48.47  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.|+=|+|||++++.+++.+..
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            7999999999999999999999743

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.25  E-value=0.0077  Score=51.67  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +-.+.|+||+|+||||+...||...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3368999999999999999998753

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.25  E-value=0.0049  Score=51.94  Aligned_cols=25  Identities=16%  Similarity=0.185  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -.+++||+|||||++++.+++.+..
T Consensus       135 R~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        135 RGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4699999999999999999998754

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.25  E-value=0.00076  Score=54.82  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|.+||+|+|||+...++-.++..
T Consensus       128 ILVTGpTGSGKSTTlAamId~iN~  151 (353)
T COG2805         128 ILVTGPTGSGKSTTLAAMIDYINK  151 (353)
T ss_pred             EEEeCCCCCcHHHHHHHHHHHHhc
Confidence            788999999999999999999776

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=97.24  E-value=0.00078  Score=50.34  Aligned_cols=45  Identities=22%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|.+|++.+.+.+... .      .+...+|.+|+|+|||.++..++..+..
T Consensus         7 ~Q~~ai~~i~~~~~~~-~------~~~~~ll~~~tGsGKT~~~~~~~~~l~~   51 (184)
T PF04851_consen    7 YQQEAIARIINSLENK-K------EERRVLLNAPTGSGKTIIALALILELAR   51 (184)
T ss_dssp             HHHHHHHHHHHHHHTT-S------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc-C------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence            3777777777766654 0      1236899999999999999987776554

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.24  E-value=0.00032  Score=53.59  Aligned_cols=26  Identities=12%  Similarity=0.253  Sum_probs=22.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|+||+|+|||++++.+.+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            56679999999999999999998763

>PRK10646 ADP-binding protein; Provisional

Probab=97.24  E-value=0.00086  Score=49.48  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+....+.+.+...+....      .++|.|+=|+|||++++.+++.+..
T Consensus        10 s~~~t~~l~~~la~~l~~g~------vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         10 DEQATLDLGARVAKACDGAT------VIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CHHHHHHHHHHHHHhCCCCc------EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            44556666677766654322      7899999999999999999999754

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]

Probab=97.23  E-value=0.00031  Score=57.85  Aligned_cols=43  Identities=16%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .||+.|-.++.+.+....          -.+++.-+|.|||.+.-...+....
T Consensus       100 ~~Q~~as~~l~q~i~~k~----------~~lv~AV~GaGKTEMif~~i~~al~  142 (441)
T COG4098         100 PGQKKASNQLVQYIKQKE----------DTLVWAVTGAGKTEMIFQGIEQALN  142 (441)
T ss_pred             hhHHHHHHHHHHHHHhcC----------cEEEEEecCCCchhhhHHHHHHHHh
Confidence            478888888877776542          3688999999999988544444333

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00028  Score=52.20  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.|||||||||+|+.||+.+.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            356889999999999999999953

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.23  E-value=0.00069  Score=57.31  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++||+|+|||++++.+++.+..
T Consensus       172 ~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        172 GLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Confidence            788899999999999999998654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.23  E-value=0.00031  Score=53.90  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+.||+|+|||++|+.|+..|..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            578999999999999999999875

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02840 tRNA dimethylallyltransferase

Probab=97.22  E-value=0.0014  Score=55.96  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+++.||+|+|||++|..||+.+.
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~   46 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLN   46 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCC
Confidence            344689999999999999999999964

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=97.22  E-value=0.0049  Score=46.69  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||.|+|||.+..++.-.+..
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~~~~~~   48 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAICFVLGG   48 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4679999999999999999887655

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.22  E-value=0.0003  Score=56.13  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|+|+||+|||++|+.+++.+..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~   25 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE   25 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999998753

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=97.21  E-value=0.0058  Score=50.26  Aligned_cols=59  Identities=17%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          15 VLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        15 ~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.+-|.+-+-|.++.++.+.+.+...+....  .....++|+|+.|+|||++...+...+
T Consensus        42 ~~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~~--~~~~~~~l~G~g~nGKStl~~~l~~l~  100 (304)
T TIGR01613        42 TWNGFLLETFGGDNELIEYLQRVIGYSLTGNY--TEQKLFFLYGNGGNGKSTFQNLLSNLL  100 (304)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHhHHhcCCC--CceEEEEEECCCCCcHHHHHHHHHHHh
Confidence            34555665555565567777666665554422  234468999999999999999887664

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>TIGR00416 sms DNA repair protein RadA

Probab=97.21  E-value=0.0011  Score=57.48  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|+||+|||+++..++..+..
T Consensus        96 vilI~G~pGsGKTTL~lq~a~~~a~  120 (454)
T TIGR00416        96 LILIGGDPGIGKSTLLLQVACQLAK  120 (454)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999887654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.018  Score=49.17  Aligned_cols=135  Identities=13%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--ccchhhh----------
Q psy1695          28 ELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--TSRFVHK----------   90 (202)
Q Consensus        28 ~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~----------   90 (202)
                      +..++.+.+-+...+...+     ..+.|..++++|--|+||||.+--||.++....+...  ..+.++.          
T Consensus        72 q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La  151 (451)
T COG0541          72 QQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLA  151 (451)
T ss_pred             HHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHH
Confidence            3444555555544444211     1245778999999999999999999999876211100  1111111          


Q ss_pred             ---hcccccC-CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          91 ---FNSRIHF-PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        91 ---~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                         ...-+.. .....+     .+...-.+......++|+|+|-+.+++-  +..+.+..+-+.-      .-..+++++
T Consensus       152 ~q~~v~~f~~~~~~~Pv-----~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~------~P~E~llVv  220 (451)
T COG0541         152 EQVGVPFFGSGTEKDPV-----EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI------NPDETLLVV  220 (451)
T ss_pred             HHcCCceecCCCCCCHH-----HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc------CCCeEEEEE
Confidence               0011111 011111     1223333345556679999999988864  3444444433321      115566666


Q ss_pred             eeCcChHHH
Q psy1695         165 LSNSGGTEI  173 (202)
Q Consensus       165 tsn~~~~~i  173 (202)
                      -+-.+.+..
T Consensus       221 Dam~GQdA~  229 (451)
T COG0541         221 DAMIGQDAV  229 (451)
T ss_pred             ecccchHHH
Confidence            666665443

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0014  Score=52.53  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+-++|++||||||+++.+.....+
T Consensus        41 ~~glVGESG~GKSTlgr~i~~L~~p   65 (268)
T COG4608          41 TLGLVGESGCGKSTLGRLILGLEEP   65 (268)
T ss_pred             EEEEEecCCCCHHHHHHHHHcCcCC
Confidence            5889999999999999999998654

>KOG3347|consensus

Probab=97.20  E-value=0.00031  Score=51.34  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+|++|-||||||+++..+|+.+
T Consensus         9 NILvtGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHh
Confidence            58999999999999999999773

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.19  E-value=0.0044  Score=48.71  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+++.||.|+|||++.+.++.
T Consensus        33 ~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          33 CQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.18  E-value=0.00039  Score=51.13  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=21.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++.|+||+|||++|+.++..+..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            688999999999999999999753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK14528 adenylate kinase; Provisional

Probab=97.18  E-value=0.00037  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.||||+|||++|+.+++.+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999874

>TIGR01351 adk adenylate kinases

Probab=97.16  E-value=0.00036  Score=54.22  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||||+|||++|+.||+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999874

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR00643 recG ATP-dependent DNA helicase RecG

Probab=97.16  E-value=0.0035  Score=56.69  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=19.0

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcc
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFID  147 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le  147 (202)
                      .+++|+||+|++.......|+....
T Consensus       358 l~lvVIDEaH~fg~~qr~~l~~~~~  382 (630)
T TIGR00643       358 LALVIIDEQHRFGVEQRKKLREKGQ  382 (630)
T ss_pred             cceEEEechhhccHHHHHHHHHhcc
Confidence            4899999999998776666665443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.16  E-value=0.00029  Score=53.64  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||+|+|||++++.|+..+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998874

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.16  E-value=0.0015  Score=52.33  Aligned_cols=67  Identities=10%  Similarity=0.135  Sum_probs=45.3

Q ss_pred             CCchHHHHHHHHh---hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          10 SSNVRVLEEQLKQ---HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        10 ~~~~~~l~~~L~~---~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++.+++..+..   -+-=|..+.+.+...+..++.... .+.|..+-+.|++|+|||++|+.++..+..
T Consensus        39 ~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~pfIIgiaGsvavGKST~ar~L~~ll~~  108 (283)
T COG1072          39 PISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNN-QQRPFIIGIAGSVAVGKSTTARILQALLSR  108 (283)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCEEEEeccCccccHHHHHHHHHHHHhh
Confidence            3455555544432   222245566666666666664333 557888999999999999999999999766

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.15  E-value=0.00039  Score=54.18  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++||||+|||++|+.||+.+.
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999853

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.15  E-value=0.00048  Score=53.11  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=23.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|..+++.|+||+|||++|+.+++.+
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35578999999999999999999985

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.14  E-value=0.00041  Score=53.26  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+.||+|+|||++++.|+..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.14  E-value=0.00038  Score=51.75  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=17.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.|+|++|||||++++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            579999999999999999988

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.13  E-value=0.00046  Score=53.18  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+.++||+|+|||++++.++..+
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999999985

>KOG3354|consensus

Probab=97.13  E-value=0.011  Score=43.57  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++.|++|+|||++++++++.|..
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~   38 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGL   38 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCC
Confidence            6889999999999999999999755

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.12  E-value=0.001  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||++.+++...+.+
T Consensus        27 ~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          27 NILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCC
Confidence            6899999999999999999988644

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0482|consensus

Probab=97.11  E-value=0.0013  Score=56.87  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC-CC---CCceEEEEecCCCCcHHHHHHHHHHHhhcc-ccCcCccch
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-HN---TKALAISLHGLPGTGKNYVTDFIVSSIFKR-YKDKGTSRF   87 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~-~~---~~pl~~ll~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~   87 (202)
                      -+.|...+..+++|++++++.+.-.+-....... +.   +.-..++|.|.||+.||-|.+.+.+..-+. +..|..+.-
T Consensus       333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG  412 (721)
T KOG0482|consen  333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG  412 (721)
T ss_pred             HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc
Confidence            4667777888999999999988766655332111 00   111359999999999999999988763321 000000100


Q ss_pred             hhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695          88 VHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      +....+-+..+..+... .+       -+++--+..+|--|||+|||...-...+..+||...+
T Consensus       413 VGLTAAVmkDpvTgEM~-LE-------GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI  468 (721)
T KOG0482|consen  413 VGLTAAVMKDPVTGEMV-LE-------GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI  468 (721)
T ss_pred             cccchhhhcCCCCCeeE-ec-------cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence            11111111111110000 00       0122223457778999999999888899999987543

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.11  E-value=0.00054  Score=51.61  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.|++|+|||++++.+|+.+
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHc
Confidence            58999999999999999999985

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.11  E-value=0.016  Score=45.53  Aligned_cols=119  Identities=17%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh------hhhc-----ccccCCCCchhHHHHHHh----HHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV------HKFN-----SRIHFPNENHVSLYRLQL----TNWI  114 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~l----~~~~  114 (202)
                      .+++++++|-|+.|||++|+.|+++|.=   .|....+.      +...     +.+..+........++++    ...+
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w---~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl   87 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNW---LGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDL   87 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhh---cCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999854   33322111      1111     111111111111122211    1233


Q ss_pred             HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHHHH
Q psy1695         115 ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTFLE  179 (202)
Q Consensus       115 ~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~~~  179 (202)
                      ...+......|-|+|--+. ..+-...|...+.+..       -+++||=.....++.+...+.+
T Consensus        88 ~~~l~~~~G~VAI~DATN~-T~~RR~~l~~~~~~~~-------~~vlFIEsic~D~~ii~~NI~~  144 (222)
T PF01591_consen   88 IEWLQEEGGQVAIFDATNS-TRERRKMLVERFKEHG-------IKVLFIESICDDPEIIERNIRE  144 (222)
T ss_dssp             HHHHHTS--SEEEEES----SHHHHHHHHHHHHHTT--------EEEEEEEE---HHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCC-CHHHHHHHHHHHHHcC-------CcEEEEEEEeCCHHHHHHHHHH
Confidence            4445545567888886543 4455666666666532       3555555555555555555543

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>KOG2228|consensus

Probab=97.10  E-value=0.012  Score=48.84  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=37.4

Q ss_pred             CchHHHHHHHHhhC-------CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHH
Q psy1695          11 SNVRVLEEQLKQHV-------HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI   71 (202)
Q Consensus        11 ~~~~~l~~~L~~~l-------iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~l   71 (202)
                      .++..++..|.+++       .|..+--+.+.+.+++-...+    ....+++.||.|+|||.+....
T Consensus         6 ~dl~siqr~l~~rl~~~~~~l~g~~~~~~~l~~~lkqt~~~g----EsnsviiigprgsgkT~li~~~   69 (408)
T KOG2228|consen    6 SDLSSIQRILRERLCGPHINLFGVQDEQKHLSELLKQTILHG----ESNSVIIIGPRGSGKTILIDTR   69 (408)
T ss_pred             hhHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHHHHHHHhc----CCCceEEEccCCCCceEeeHHH
Confidence            35667777776654       455555666666676643332    2226899999999999976443

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.09  E-value=0.0025  Score=56.86  Aligned_cols=64  Identities=11%  Similarity=0.294  Sum_probs=43.3

Q ss_pred             cCCCchHHHHHHHHhhC-----CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695           8 IQSSNVRVLEEQLKQHV-----HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus         8 ~~~~~~~~l~~~L~~~l-----iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++-..+++.|....     +-..++.+.+.+.....      .++|..++|+|++|+|||++|+.+++.+..
T Consensus       350 ~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r------~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~  418 (568)
T PRK05537        350 VLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPR------HKQGFTVFFTGLSGAGKSTIAKALMVKLME  418 (568)
T ss_pred             eeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccc------cCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence            45566678888787643     33444444333332221      346667999999999999999999999763

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.09  E-value=0.0058  Score=47.79  Aligned_cols=22  Identities=14%  Similarity=0.089  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||+|+|||++.+.++..
T Consensus        32 ~~~l~Gpn~sGKstllr~i~~~   53 (216)
T cd03284          32 ILLITGPNMAGKSTYLRQVALI   53 (216)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            5789999999999999999753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK13975 thymidylate kinase; Provisional

Probab=97.09  E-value=0.00059  Score=52.13  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.|++|+|||++++.|++.+..
T Consensus         4 ~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          4 FIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999999753

>PLN02459 probable adenylate kinase

Probab=97.09  E-value=0.0006  Score=54.68  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|+.++|.||||+||+++|..+|+.+
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~   53 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLL   53 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            45568889999999999999999985

>PRK04328 hypothetical protein; Provisional

Probab=97.09  E-value=0.003  Score=50.49  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.||||+|||.++..++..
T Consensus        25 ~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         25 VVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999887665

>PRK13946 shikimate kinase; Provisional

Probab=97.08  E-value=0.00057  Score=52.02  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+++.|++|+|||++++.+|+.+.
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~Lg   35 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATMLG   35 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999999863

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.07  E-value=0.00049  Score=49.90  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.||+|+|||++++.+++.+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            5789999999999999999874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK13764 ATPase; Provisional

Probab=97.07  E-value=0.0036  Score=55.95  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+||||++++++..+..
T Consensus       259 ~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        259 GILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5899999999999999999999754

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]

Probab=97.06  E-value=0.0023  Score=55.38  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++-|+|+|||.+|..++..+..
T Consensus        58 gvivlpTGaGKT~va~~~~~~~~~   81 (442)
T COG1061          58 GVIVLPTGAGKTVVAAEAIAELKR   81 (442)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHhcC
Confidence            577889999999999999998655

>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides

Probab=97.06  E-value=0.00062  Score=54.97  Aligned_cols=88  Identities=19%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .+.|+||++||||.+|.+|+..+..   -|    .+  +..     ...+              .+..+....+++.|=-
T Consensus       115 ti~~~Gp~~tGKt~la~aI~~~~~~---~G----~v--n~~-----n~nF--------------~f~d~~~k~l~~weE~  166 (271)
T PF01057_consen  115 TIWFYGPASTGKTNLADAIANAVPN---YG----CV--NWN-----NNNF--------------PFQDCFNKRLIWWEEP  166 (271)
T ss_dssp             EEEEESTTTSSHCHCHHCCCHHSCC---EE----EE--ECT-----TTCC--------------CCCCCCCECEEECTCG
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhCCc---cc----Ee--ccC-----CCCC--------------ChhhhhhccEEEeccc
Confidence            6999999999999999999888422   11    11  110     0111              1233444444444444


Q ss_pred             CCChhHHHHHHHhcccCcccc------cccCCceEEEEeeCc
Q psy1695         133 KFPKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNS  168 (202)
Q Consensus       133 ~~~~~~~~~L~~~le~~~~~~------~~~~~~~~~Iltsn~  168 (202)
                      .+.....+.+..++.-..+.-      ......+.+|+|||.
T Consensus       167 ~~~~~~ve~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~  208 (271)
T PF01057_consen  167 NMYPDEVETAKMILGGTPVRVDVKNKDSEELERTPVIITSNN  208 (271)
T ss_dssp             GCCTTCHHHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECC
T ss_pred             CccHHHHHHHHHHhCCCceEeecccCCceEecCCceEEEecc
Confidence            677778888888877554321      235677788889985

Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.06  E-value=0.0019  Score=58.90  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++|++|+||||+++.+.....+
T Consensus       502 vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         502 VAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            889999999999999999887544

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.06  E-value=0.01  Score=47.08  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .|..+++.|++|+|||++...+...+.
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            455689999999999999999887653

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14526 adenylate kinase; Provisional

Probab=97.06  E-value=0.00055  Score=53.39  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++|+||||+|||++++.+|+.+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999874

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.05  E-value=0.00045  Score=52.09  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||+|+|||++++.|++..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.05  E-value=0.0026  Score=55.20  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+++.||+|+|||++|..||..+.
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~   47 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFP   47 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            444688999999999999999999964

>PTZ00301 uridine kinase; Provisional

Probab=97.05  E-value=0.00067  Score=52.83  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.|+||+||||+|+.|++.+.
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH
Confidence            578999999999999999988764

>PLN02674 adenylate kinase

Probab=97.04  E-value=0.0013  Score=52.40  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..++|.||||+||++.|+.||+.+
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999999984

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.03  E-value=0.0042  Score=54.85  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++.+.....+
T Consensus       363 ~vaIvG~SGsGKSTLl~lL~g~~~p  387 (529)
T TIGR02868       363 RVAILGPSGSGKSTLLMLLTGLLDP  387 (529)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999887544

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG2680|consensus

Probab=97.02  E-value=0.0008  Score=54.75  Aligned_cols=55  Identities=25%  Similarity=0.212  Sum_probs=39.6

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+..+||-.|.+...-.++-...+.-   ...++++.|+||+|||.+|..+++.|-.
T Consensus        38 ~s~GmVGQ~~AR~Aagvi~kmi~egki---aGraiLiaG~pgtGKtAiAmg~sksLG~   92 (454)
T KOG2680|consen   38 VSEGMVGQVKARKAAGVILKMIREGKI---AGRAILIAGQPGTGKTAIAMGMSKSLGD   92 (454)
T ss_pred             ccccchhhHHHHHHhHHHHHHHHcCcc---cceEEEEecCCCCCceeeeeehhhhhCC
Confidence            345789998887775444443333321   2337999999999999999999999654

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00054  Score=51.23  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             cCCceEEEEeeCcChHHHHHHHHHHHH
Q psy1695         156 SFQNTIFLFLSNSGGTEIMNTFLELRK  182 (202)
Q Consensus       156 ~~~~~~~Iltsn~~~~~i~~~~~~~~~  182 (202)
                      .+..++.|=|||.+.+.+.+...+...
T Consensus       129 ~~~~v~evdtt~~s~ee~~~~i~~ii~  155 (180)
T COG1936         129 RFEAVIEVDTTNRSPEEVAEEIIDIIG  155 (180)
T ss_pred             hcCceEEEECCCCCHHHHHHHHHHHHc
Confidence            346788889999999998888876544

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.02  E-value=0.0014  Score=53.80  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||+|+|||++++++...+.
T Consensus       134 ~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       134 NILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999998864

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK13948 shikimate kinase; Provisional

Probab=97.01  E-value=0.00079  Score=51.27  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |-.++|.|.+|+|||++++.+|+.+.
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg   35 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALM   35 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            44689999999999999999999863

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=97.00  E-value=0.0071  Score=56.18  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=15.0

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~   69 (202)
                      .+++.||+|+|||+..-
T Consensus        22 ~vvv~A~TGSGKTt~~p   38 (812)
T PRK11664         22 QVLLKAPTGAGKSTWLP   38 (812)
T ss_pred             CEEEEcCCCCCHHHHHH
Confidence            58999999999999764

>PF00488 MutS_V: MutS domain V C-terminus

Probab=97.00  E-value=0.011  Score=46.77  Aligned_cols=25  Identities=20%  Similarity=0.129  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..++++||...|||++.+.++....
T Consensus        44 ~~~iiTGpN~sGKSt~lk~i~~~~i   68 (235)
T PF00488_consen   44 RIIIITGPNMSGKSTFLKQIGLIVI   68 (235)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCccchhhHHHHHHHHhh
Confidence            3689999999999999999988753

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.00  E-value=0.00069  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|+|++|+|||++++.+|+.+
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999985

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=97.00  E-value=0.0043  Score=62.51  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.|++|||||++.+.+.+.+..
T Consensus       448 v~ii~G~aGTGKTt~l~~l~~~~~~  472 (1960)
T TIGR02760       448 FIIINGFGGTGSTEIAQLLLHLASE  472 (1960)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999988654

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 39/239 (16%), Positives = 70/239 (29%), Gaps = 57/239 (23%)

Query: 7   FIQSSNVRV--LEEQLKQHVHGQELAISHICGALKNHFQNRYHN---------TKALAIS 55
            ++  + R   L  ++          +S I           + N         T  +  S
Sbjct: 307 LLKYLDCRPQDLPREVLT---TNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 56  LHGL-PGTGKNYVTDF--------IVSSIFKRY----KDKGTSRFVHKFNSR---IHFPN 99
           L+ L P   +              I + +                V+K +        P 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 100 ENHVSLYRLQLTNWI-ISNVTACDRAIF-------IFDEVDKFPKGLLDVIIPFIDHHAV 151
           E+ +S+  + L   + + N  A  R+I         FD  D  P  L       I HH  
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 152 ----YNQISFQNTIFL---FLSN---------SGGTEIMNTFLELRKSECIEFIFQCQP 194
                 +++    +FL   FL           +    I+NT  +L+  +   +I    P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDP 539

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 47/200 (23%)

Query: 4   TDKFIQSSNVRVLEEQL--KQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPG 61
           T  +I+  +    + Q+  K +V   +  +      L+              + + G+ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLELRPAKN---VLIDGVLG 160

Query: 62  TGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC 121
           +GK +V   +  S           +   K + +I                 W+  N+  C
Sbjct: 161 SGKTWVALDVCLS----------YKVQCKMDFKIF----------------WL--NLKNC 192

Query: 122 DRAIFIFDEVDKFPKGLLDVIIPFIDHHA--VYNQISFQNTIFLFLSNSGGTEIMNTFLE 179
           +    + + + K    +        DH +       S Q  +   L +       N  L 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLV 249

Query: 180 LR---KSECIE-FIFQCQPL 195
           L     ++    F   C+ L
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.85
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.85
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.85
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.76
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.72
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.7
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.7
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.67
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.67
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.66
3co5_A	143	Putative two-component system transcriptional RES	99.64
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.62
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.61
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.6
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.59
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.58
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.58
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.57
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.57
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.57
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.56
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.56
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.55
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.55
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.54
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.54
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.53
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.52
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.52
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.52
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.51
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.51
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.5
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.5
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.48
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.48
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.48
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.47
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.47
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.47
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.47
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.46
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.46
3pvs_A	447	Replication-associated recombination protein A; ma	99.46
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.45
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.45
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.43
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.42
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.42
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.4
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.39
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.37
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.37
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.35
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.33
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.32
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.31
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.31
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.3
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.26
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.25
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.24
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.22
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.21
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.21
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.21
3bos_A	242	Putative DNA replication factor; P-loop containing	99.2
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.2
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.18
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.17
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.17
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.17
2qgz_A	308	Helicase loader, putative primosome component; str	99.12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.11
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.11
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.08
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.03
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.0
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.96
3f8t_A	506	Predicted ATPase involved in replication control,	98.87
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.78
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.76
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.52
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.44
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.42
2fna_A	357	Conserved hypothetical protein; structural genomic	98.41
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.39
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.29
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	98.26
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.15
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.02
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.99
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.94
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.93
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.92
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.9
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.85
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.81
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.8
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.78
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.75
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.73
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.73
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.72
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.72
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.72
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.72
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.7
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.7
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.68
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.68
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.67
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.66
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.66
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.65
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.65
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.64
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.63
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.63
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.6
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.6
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.6
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.58
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.58
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.56
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.55
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.55
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.54
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.54
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.53
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.53
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.52
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.52
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.5
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.5
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.49
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.49
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.49
1via_A	175	Shikimate kinase; structural genomics, transferase	97.48
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.47
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.46
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.46
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.46
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.46
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.46
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.46
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.45
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.43
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.43
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.42
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.42
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.4
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.39
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.39
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.39
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.39
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.39
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.38
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.36
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.35
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.35
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.35
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.34
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.34
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.34
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.33
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.33
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.31
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.31
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.3
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.29
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.29
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.28
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.27
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.27
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.25
2og2_A	359	Putative signal recognition particle receptor; nuc	97.24
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.22
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.21
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.21
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.2
2xxa_A	433	Signal recognition particle protein; protein trans	97.2
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.19
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.19
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.18
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.17
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.17
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.17
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.16
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.16
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.14
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.14
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.14
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.13
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.11
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.1
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.07
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.06
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.05
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.04
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.03
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.03
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.01
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.0
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.0
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.0
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.99
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.98
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.96
3h1t_A	590	Type I site-specific restriction-modification syst	96.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.95
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.93
3io5_A	333	Recombination and repair protein; storage dimer, i	96.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.9
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.89
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.87
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.87
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.85
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.84
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.83
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.82
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.8
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.8
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.8
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.78
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.77
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.77
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.76
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.75
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.75
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.75
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.72
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.72
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	96.71
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.68
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.67
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.66
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.65
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.65
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.64
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.63
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.63
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.59
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.59
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.56
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.55
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.53
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.5
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.49
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.48
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.46
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.45
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	96.45
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.42
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.41
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	96.4
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	96.39
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.39
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.38
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.36
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.32
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.3
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.29
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.29
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.28
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.27
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.27
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.27
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.27
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.25
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.22
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.2
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.2
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.18
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.17
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	96.16
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.14
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.13
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.11
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.11
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.1
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.1
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.09
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.05
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.05
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.05
1g6h_A	257	High-affinity branched-chain amino acid transport	96.05
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.04
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.02
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.02
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.02
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.01
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.01
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.01
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.99
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.97
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.96
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.94
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.91
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.91
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.88
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.87
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.86
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.86
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	95.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.85
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.85
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.84
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.84
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.83
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.83
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.83
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.83
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.82
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.81
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.77
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.76
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.75
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	95.75
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.74
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.73
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.73
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.71
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.71
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.71
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.68
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.68
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	95.68
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.67
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.66
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.66
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.63
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.63
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.62
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.6
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.6
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.58
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	95.58
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.58
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.57
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.56
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.56
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.55
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.54
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.53
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.53
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.53
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.52
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.52
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.52
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.51
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.51
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.5
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.5
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	95.49
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.48
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.47
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.46
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.45
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.45
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.45
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.44
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	95.44
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.43
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.42
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.41
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.4
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.4
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.39
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.37
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	95.37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.37
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.36
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.35
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.35
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.34
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.32
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.31
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.31
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.28
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.24
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.24
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.24
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.24
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.23
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.22
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.21
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.19
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.19
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.18
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.17
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.14
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.13
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.11
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.1
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.09
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.09
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.08
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.06
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.05
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.05
1z63_A	500	Helicase of the SNF2/RAD54 hamily; protein-DNA com	95.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.04
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.03
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.99
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.98
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.94
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.93
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.92
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.89
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.88
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.87

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.85  E-value=5e-21  Score=172.94  Aligned_cols=168  Identities=19%  Similarity=0.308  Sum_probs=124.0

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      .+..+++.|.+.++||+.+++.+..++.....+...+++|. +++|+||||||||++|+++|+.++.   .  ..+++.+
T Consensus       481 ~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~--~~~~i~i  555 (758)
T 3pxi_A          481 KLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---D--EESMIRI  555 (758)
T ss_dssp             CC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---C--TTCEEEE
T ss_pred             HHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CcceEEE
Confidence            35678889999999999999999999998654433355776 5999999999999999999999866   3  3467777


Q ss_pred             hcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEee
Q psy1695          91 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLS  166 (202)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Ilts  166 (202)
                      +++.+.......        .+.+.+.+...+++|++|||++++++++++.|+++|+++.+++.    .++.++++|+||
T Consensus       556 ~~s~~~~~~~~~--------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt  627 (758)
T 3pxi_A          556 DMSEYMEKHSTS--------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS  627 (758)
T ss_dssp             EGGGGCSSCCCC-----------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred             echhcccccccc--------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence            777665443222        12333456677889999999999999999999999999887643    578899999999


Q ss_pred             CcChHHHHHHHHHHHHhhhHHHHhcc
Q psy1695         167 NSGGTEIMNTFLELRKSECIEFIFQC  192 (202)
Q Consensus       167 n~~~~~i~~~~~~~~~~~~~r~~~~~  192 (202)
                      |.+.+............++++|..|+
T Consensus       628 n~~~~~~~~~~~~~~~~f~p~l~~Rl  653 (758)
T 3pxi_A          628 NVGASEKDKVMGELKRAFRPEFINRI  653 (758)
T ss_dssp             SSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred             CCChhhHHHHHHHHHhhCCHHHHhhC
Confidence            98765322222223344566666666

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.85  E-value=6.8e-21  Score=174.02  Aligned_cols=173  Identities=19%  Similarity=0.340  Sum_probs=122.2

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695          14 RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN   92 (202)
Q Consensus        14 ~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~   92 (202)
                      ..+++.+.+.++||+.+++.+..++.....+...+++|. +++|+||||||||++|+++++.+.+   .  ..+++.+++
T Consensus       550 ~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~--~~~~i~i~~  624 (854)
T 1qvr_A          550 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRIDM  624 (854)
T ss_dssp             HSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEEECT
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---C--CCcEEEEec
Confidence            456777888999999999999999988654322244676 6999999999999999999999866   2  223444443


Q ss_pred             cc---------ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCc
Q psy1695          93 SR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQN  159 (202)
Q Consensus        93 ~~---------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~  159 (202)
                      +.         +.+.++++++ +.+  .+.+.+.+...+++||+|||++++++++++.|+++|+++.+++.    +++++
T Consensus       625 ~~~~~~~~~s~l~g~~~~~~G-~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~  701 (854)
T 1qvr_A          625 TEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRN  701 (854)
T ss_dssp             TTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred             hhccchhHHHHHcCCCCCCcC-ccc--cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCC
Confidence            32         2333445555 433  34566777788889999999999999999999999999987643    58899


Q ss_pred             eEEEEeeCcChHHHHHH---------HHH-----HHHhhhHHHHhccch
Q psy1695         160 TIFLFLSNSGGTEIMNT---------FLE-----LRKSECIEFIFQCQP  194 (202)
Q Consensus       160 ~~~Iltsn~~~~~i~~~---------~~~-----~~~~~~~r~~~~~~~  194 (202)
                      +++|+|||.+.+.+.+.         +-+     ....++++|..++..
T Consensus       702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~  750 (854)
T 1qvr_A          702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDE  750 (854)
T ss_dssp             EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSB
T ss_pred             eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCe
Confidence            99999999987766441         111     244567777777744

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.85  E-value=1.1e-20  Score=170.60  Aligned_cols=152  Identities=21%  Similarity=0.320  Sum_probs=117.8

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      .+..+++.|.+.++||+.+++.+..++.....+-..+++|. +++|+||||||||++|+++++.+..        +++.+
T Consensus       448 ~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~--------~~~~i  519 (758)
T 1r6b_X          448 TLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLRF  519 (758)
T ss_dssp             HHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC--------EEEEE
T ss_pred             HHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC--------CEEEE
Confidence            35678889999999999999999999987654332245676 5999999999999999999999732        33444


Q ss_pred             hcc---------cccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNS---------RIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++         .+.+.++++++ +.+  .+.+.+.+...+++|++|||++++++++++.|+++|+++.+++.    +++
T Consensus       520 ~~s~~~~~~~~~~l~g~~~g~~g-~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~  596 (758)
T 1r6b_X          520 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADF  596 (758)
T ss_dssp             EGGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred             echhhcchhhHhhhcCCCCCCcC-ccc--cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence            333         33445566776 544  45567778888999999999999999999999999999887643    578


Q ss_pred             CceEEEEeeCcChHHHH
Q psy1695         158 QNTIFLFLSNSGGTEIM  174 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~  174 (202)
                      .+++||+|||.+.+.+.
T Consensus       597 ~~~~iI~tsN~~~~~~~  613 (758)
T 1r6b_X          597 RNVVLVMTTNAGVRETE  613 (758)
T ss_dssp             TTEEEEEEECSSCC---
T ss_pred             CCeEEEEecCcchhhhh
Confidence            99999999999765443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.85  E-value=1.7e-20  Score=152.23  Aligned_cols=154  Identities=19%  Similarity=0.344  Sum_probs=113.2

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      .+..+++.|.+.++||+.+++.+..++......-..+.+|. +++|+||||||||++|+++++.+.+   .  ..+++.+
T Consensus         7 ~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~--~~~~~~~   81 (311)
T 4fcw_A            7 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIRI   81 (311)
T ss_dssp             HHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---C--GGGEEEE
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---C--CcceEEe
Confidence            46789999999999999999999999998654322234565 5999999999999999999999865   2  1223333


Q ss_pred             hcccc---------cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNSRI---------HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~~~---------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++.+         .+..+++.+ +..  ...+.+.+..++.++++|||++++++.+++.|+++|+++.+...    .++
T Consensus        82 ~~~~~~~~~~~~~l~g~~~~~~~-~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~  158 (311)
T 4fcw_A           82 DMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDF  158 (311)
T ss_dssp             EGGGCCSTTHHHHHHCCCTTSTT-TTT--CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred             ecccccccccHHHhcCCCCcccc-ccc--cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence            33222         112222222 111  23455667777889999999999999999999999999876543    577


Q ss_pred             CceEEEEeeCcChHHH
Q psy1695         158 QNTIFLFLSNSGGTEI  173 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i  173 (202)
                      ++++||+|||.+.+.+
T Consensus       159 ~~~iiI~ttn~~~~~i  174 (311)
T 4fcw_A          159 RNTVIIMTSNLGSPLI  174 (311)
T ss_dssp             TTEEEEEEESTTHHHH
T ss_pred             CCcEEEEecccCHHHH
Confidence            8999999999976533

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.76  E-value=8.2e-18  Score=136.32  Aligned_cols=157  Identities=13%  Similarity=0.173  Sum_probs=103.8

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHh-------ccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQ-------NRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-   83 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~-------~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-   83 (202)
                      .+..+.+.|.++++|++.+++.+.+.+.....       +-.....+.+++|+||||||||++|+++++.+..   .+. 
T Consensus        21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~   97 (309)
T 3syl_A           21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR---LGYV   97 (309)
T ss_dssp             THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH---TTSS
T ss_pred             cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCc
Confidence            46778888988999999999999887765321       0000123447999999999999999999999865   221 


Q ss_pred             -ccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccc
Q psy1695          84 -TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYN  153 (202)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~  153 (202)
                       ..+++.+....+.....+..       ...+.+.+.....+|++|||++.+         +..+++.|+++++++.   
T Consensus        98 ~~~~~~~~~~~~l~~~~~g~~-------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~---  167 (309)
T 3syl_A           98 RKGHLVSVTRDDLVGQYIGHT-------APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR---  167 (309)
T ss_dssp             SSCCEEEECGGGTCCSSTTCH-------HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT---
T ss_pred             CCCcEEEEcHHHhhhhccccc-------HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC---
Confidence             22344444444322222111       112223333345679999999966         7889999999999875   


Q ss_pred             cccCCceEEEEeeCcChHHHHHHHHHHHHhhhHHH
Q psy1695         154 QISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEF  188 (202)
Q Consensus       154 ~~~~~~~~~Iltsn~~~~~i~~~~~~~~~~~~~r~  188 (202)
                          .+.++|+++|....   +.++...+..+.||
T Consensus       168 ----~~~~~i~~~~~~~~---~~~~~~~~~l~~R~  195 (309)
T 3syl_A          168 ----DDLVVILAGYADRM---ENFFQSNPGFRSRI  195 (309)
T ss_dssp             ----TTCEEEEEECHHHH---HHHHHHSTTHHHHE
T ss_pred             ----CCEEEEEeCChHHH---HHHHhhCHHHHHhC
Confidence                78899999987632   22222335555566

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.72  E-value=1.2e-17  Score=138.82  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=95.4

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc-------CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCc
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR-------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT   84 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~-------~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~   84 (202)
                      ++..+++.|++.++||+.+++.+..++.......       .....+.+++|+||||||||++|+++|+.+..       
T Consensus         5 ~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-------   77 (363)
T 3hws_A            5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV-------   77 (363)
T ss_dssp             CHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred             CHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------
Confidence            5788999999999999999999999996533211       00112346999999999999999999999632       


Q ss_pred             cchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-------hCCceEEEEecCCCCChh--------------HHHHHH
Q psy1695          85 SRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------ACDRAIFIFDEVDKFPKG--------------LLDVII  143 (202)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------~~~~~viiiDEid~~~~~--------------~~~~L~  143 (202)
                       +++.++++.+..  ..+++ ...  ...+...+.       .++.+|++|||++++++.              +++.|+
T Consensus        78 -~~~~~~~~~l~~--~~~~g-~~~--~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll  151 (363)
T 3hws_A           78 -PFTMADATTLTE--AGYVG-EDV--ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL  151 (363)
T ss_dssp             -CEEEEEHHHHTT--CHHHH-HHH--THHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred             -CEEEechHHhcc--ccccc-ccH--HHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence             455555443321  22333 111  122222222       234579999999999876              999999


Q ss_pred             HhcccCccc---------------ccccCCceEEEEeeCc
Q psy1695         144 PFIDHHAVY---------------NQISFQNTIFLFLSNS  168 (202)
Q Consensus       144 ~~le~~~~~---------------~~~~~~~~~~Iltsn~  168 (202)
                      ++|+ +...               ..+...|.+||+++|.
T Consensus       152 ~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~  190 (363)
T 3hws_A          152 KLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF  190 (363)
T ss_dssp             HHHH-CC----------------CCCCCTTSSEEEEEECC
T ss_pred             HHhc-CceeeccCccccccCCCceEEEECCCceEEecCCc
Confidence            9999 4311               0125567777777776

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.70  E-value=3.9e-17  Score=118.83  Aligned_cols=119  Identities=11%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +++|++.+++.+.+.+........      +++|+||||||||++|+++++....   .  ..+++ ++++.+... ...
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~------~vll~G~~GtGKt~lA~~i~~~~~~---~--~~~~v-~~~~~~~~~-~~~   68 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDI------AVWLYGAPGTGRMTGARYLHQFGRN---A--QGEFV-YRELTPDNA-PQL   68 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCS------CEEEESSTTSSHHHHHHHHHHSSTT---T--TSCCE-EEECCTTTS-SCH
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCC------CEEEECCCCCCHHHHHHHHHHhCCc---c--CCCEE-EECCCCCcc-hhh
Confidence            589999999999998887754332      6899999999999999999987533   2  23555 555543222 101


Q ss_pred             hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695         103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  173 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i  173 (202)
                              .+    .+.....++++|||++.+++..++.|+++|+...       .+..+|++||...+..
T Consensus        69 --------~~----~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-------~~~~~I~~t~~~~~~~  120 (145)
T 3n70_A           69 --------ND----FIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-------RPFRLIGIGDTSLVEL  120 (145)
T ss_dssp             --------HH----HHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-------CSSCEEEEESSCHHHH
T ss_pred             --------hc----HHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-------CCEEEEEECCcCHHHH
Confidence                    11    1222234789999999999999999999996544       5678999999987643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.7e-16  Score=132.71  Aligned_cols=159  Identities=14%  Similarity=0.168  Sum_probs=101.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|-|.+.+++.+.+++..-+.++.     +...|.++||+||||||||++|+++|.++..        +++.+..+.+.
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--------~f~~v~~s~l~  219 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--------KFIRVSGAELV  219 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--------EEEEEEGGGGS
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--------CceEEEhHHhh
Confidence            4699999999999998876433221     1234568999999999999999999999643        56666666554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------h---HHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~---~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+.   . +.....+..........||||||+|.+.+           .   +.+.|+..|+.-.     ...++++
T Consensus       220 sk~vGe---s-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~V~v  290 (405)
T 4b4t_J          220 QKYIGE---G-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----TSKNIKI  290 (405)
T ss_dssp             CSSTTH---H-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----CCCCEEE
T ss_pred             ccccch---H-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----CCCCeEE
Confidence            433322   2 22234444445555568999999988742           1   3445555555321     2367888


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK  201 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~  201 (202)
                      |+|||.... +-.+   +++.||.         ....+.+.|+.|+++
T Consensus       291 IaATNrpd~-LDpA---llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~  334 (405)
T 4b4t_J          291 IMATNRLDI-LDPA---LLRPGRIDRKIEFPPPSVAARAEILRIHSRK  334 (405)
T ss_dssp             EEEESCSSS-SCHH---HHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred             EeccCChhh-CCHh---HcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence            999998654 2222   3566664         333444557777665

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.67  E-value=3.7e-16  Score=126.25  Aligned_cols=149  Identities=18%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCC------CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYH------NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG   83 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~------~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~   83 (202)
                      +.+++.+.+.|.+.++||+.+++.+..++...+.....      ...|.+++|+||||||||++|+++++.+..      
T Consensus         3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~------   76 (310)
T 1ofh_A            3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------   76 (310)
T ss_dssp             CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC------
T ss_pred             cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence            35789999999999999999999999988773221100      113557999999999999999999999633      


Q ss_pred             ccchhhhhcccccCCCCchhHHHHHHhHHHHHH----hhhh-CCceEEEEecCCCCChhH------------HHHHHHhc
Q psy1695          84 TSRFVHKFNSRIHFPNENHVSLYRLQLTNWIIS----NVTA-CDRAIFIFDEVDKFPKGL------------LDVIIPFI  146 (202)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~-~~~~viiiDEid~~~~~~------------~~~L~~~l  146 (202)
                        +++.++++.+...  ++++.........+..    .+.. .+.+|++|||+|++++..            ++.|++++
T Consensus        77 --~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l  152 (310)
T 1ofh_A           77 --PFIKVEATKFTEV--GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV  152 (310)
T ss_dssp             --CEEEEEGGGGSSC--CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred             --CEEEEcchhcccC--CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence              3344444333211  1221000000111111    1111 125799999999998765            89999999


Q ss_pred             ccCcccc---cccCCceEEEEeeCc
Q psy1695         147 DHHAVYN---QISFQNTIFLFLSNS  168 (202)
Q Consensus       147 e~~~~~~---~~~~~~~~~Iltsn~  168 (202)
                      +.+.+..   .....+.+||+++|.
T Consensus       153 e~~~~~~~~~~~~~~~~~~i~~~~~  177 (310)
T 1ofh_A          153 EGSTVSTKHGMVKTDHILFIASGAF  177 (310)
T ss_dssp             HCCEEEETTEEEECTTCEEEEEECC
T ss_pred             cCCeEecccccccCCcEEEEEcCCc
Confidence            9764321   124457788888753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.67  E-value=1.7e-16  Score=132.34  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=90.5

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc----------------------CCCCCceEEEEecCCCCcHHHHHH
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR----------------------YHNTKALAISLHGLPGTGKNYVTD   69 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~----------------------~~~~~pl~~ll~Gp~GtGKT~la~   69 (202)
                      ++..+++.|++.|+||+.|++.+..++..+....                      .....+.+++|+||||||||++|+
T Consensus        11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~   90 (376)
T 1um8_A           11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ   90 (376)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence            5789999999999999999999998884321100                      001123369999999999999999


Q ss_pred             HHHHHhhccccCcCccchhhhhcccccCCCCchhHHH-HHHhHHHHH---HhhhhCCceEEEEecCCCCChh--------
Q psy1695          70 FIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY-RLQLTNWII---SNVTACDRAIFIFDEVDKFPKG--------  137 (202)
Q Consensus        70 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~---~~l~~~~~~viiiDEid~~~~~--------  137 (202)
                      ++|+.+..        +++.+++..+..  .++.+.. ...+...+.   ..+..+..+|++|||+++++..        
T Consensus        91 ~la~~l~~--------~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~  160 (376)
T 1um8_A           91 TLAKHLDI--------PIAISDATSLTE--AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR  160 (376)
T ss_dssp             HHHHHTTC--------CEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----------
T ss_pred             HHHHHhCC--------CEEEecchhhhh--cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec
Confidence            99998632        344443333211  1121100 000111111   1122335689999999999987        


Q ss_pred             ------HHHHHHHhcccCccc--c-c-----------ccCCceEEEEeeCc
Q psy1695         138 ------LLDVIIPFIDHHAVY--N-Q-----------ISFQNTIFLFLSNS  168 (202)
Q Consensus       138 ------~~~~L~~~le~~~~~--~-~-----------~~~~~~~~Iltsn~  168 (202)
                            +++.|+++|+.+.+.  . +           ...+|.+||+++|.
T Consensus       161 ~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~  211 (376)
T 1um8_A          161 DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF  211 (376)
T ss_dssp             ---CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred             ccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence                  999999999976321  1 0           24577788888874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=9.4e-16  Score=129.88  Aligned_cols=159  Identities=17%  Similarity=0.183  Sum_probs=99.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+.+++.+.+.+...+.++.     +-..|.++||+||||||||++|+++|.++..        +++.+..+.+.
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--------~fi~vs~s~L~  280 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--------TFIRVIGSELV  280 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGGC
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--------CeEEEEhHHhh
Confidence            3699999999999988765332211     1235668999999999999999999999643        56666666554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------h---HHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------G---LLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~---~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..    +.....+..........||||||+|.+..           .   ..+.++..|+...     ...++++
T Consensus       281 sk~vGes----ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~ViV  351 (467)
T 4b4t_H          281 QKYVGEG----ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----PRGNIKV  351 (467)
T ss_dssp             CCSSSHH----HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----CTTTEEE
T ss_pred             cccCCHH----HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----CCCcEEE
Confidence            4433322    12233444444455568999999987732           1   2344455454321     3367888


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK  201 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~  201 (202)
                      |+|||.... +-.+   +++.||.         ....+.+.|+.|+++
T Consensus       352 IaATNrpd~-LDpA---LlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~  395 (467)
T 4b4t_H          352 MFATNRPNT-LDPA---LLRPGRIDRKVEFSLPDLEGRANIFRIHSKS  395 (467)
T ss_dssp             EEECSCTTS-BCHH---HHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred             EeCCCCccc-CChh---hhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence            999987643 2233   3555654         333444557777765

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.64  E-value=9.9e-17  Score=116.45  Aligned_cols=115  Identities=9%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++|++.+++.+.+.+......+.      +++|+||||||||++|+++++...         +++.+++..+       
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~------~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~~~-------   62 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTS------PVFLTGEAGSPFETVARYFHKNGT---------PWVSPARVEY-------   62 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSS------CEEEEEETTCCHHHHHGGGCCTTS---------CEECCSSTTH-------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCC------cEEEECCCCccHHHHHHHHHHhCC---------CeEEechhhC-------
Confidence            589999999999999888764432      689999999999999999876521         3333333221       


Q ss_pred             hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                          ....   ..+.+.....++++|||++.++++.++.|+++++++.      ..+..+|++||...+.
T Consensus        63 ----~~~~---~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------~~~~~iI~~tn~~~~~  119 (143)
T 3co5_A           63 ----LIDM---PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------RCRVRVIASCSYAAGS  119 (143)
T ss_dssp             ----HHHC---HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------TTTCEEEEEEEECTTT
T ss_pred             ----ChHh---hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------CCCEEEEEecCCCHHH
Confidence                0000   1222334446799999999999999999999999752      2568899999987554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=8.4e-15  Score=123.99  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+.+++.+.+++...+.++.     +...|.++||+||||||||++|+++|..+..        +++.+..+.+.
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--------~~~~v~~s~l~  252 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--------NFIFSPASGIV  252 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGTC
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehhhhc
Confidence            4689999999999999876443321     1234568999999999999999999999643        55656555554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..    +.....+..........||||||+|.+..              .+.+.|+..|+...     ...++++
T Consensus       253 sk~~Ges----e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~viv  323 (437)
T 4b4t_L          253 DKYIGES----ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----NLGQTKI  323 (437)
T ss_dssp             CSSSSHH----HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----CTTSSEE
T ss_pred             cccchHH----HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----CCCCeEE
Confidence            4333222    12233444445555668999999987632              13455666665422     2357889


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhH---------HHHhccchhHHHhhc
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECI---------EFIFQCQPLKVYLKK  201 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~---------r~~~~~~~~~~~~~~  201 (202)
                      |+|||.... +-.+   +++.||.         ....+.+.++.|+++
T Consensus       324 I~ATNrp~~-LDpA---llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~  367 (437)
T 4b4t_L          324 IMATNRPDT-LDPA---LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK  367 (437)
T ss_dssp             EEEESSTTS-SCTT---TTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred             EEecCCchh-hCHH---HhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence            999997643 2222   2445543         233344456666665

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.61  E-value=9.9e-15  Score=122.61  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=99.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|-|.+.+++.+.+.+...+.++.     ....|.++||+||||||||++|+++|.++..        +++.+..+.+.
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--------~fi~v~~s~l~  253 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--------TFLRIVGSELI  253 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--------EEEEEESGGGC
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--------CEEEEEHHHhh
Confidence            4689999999999999876543321     1234568999999999999999999999633        56666555554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hH---HHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GL---LDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~---~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..    +.....+..........||+|||+|.+..           ..   .+.|+..++...     ...++++
T Consensus       254 sk~vGes----ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----~~~~ViV  324 (437)
T 4b4t_I          254 QKYLGDG----PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----DRGDVKV  324 (437)
T ss_dssp             CSSSSHH----HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----CSSSEEE
T ss_pred             hccCchH----HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----CCCCEEE
Confidence            4333222    22234444445555568999999986632           22   334444444311     2367889


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhHH---------HHhccchhHHHhhc
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECIE---------FIFQCQPLKVYLKK  201 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~r---------~~~~~~~~~~~~~~  201 (202)
                      |+|||.... +-.+   +++.||.+         ...+.+.|+.|+++
T Consensus       325 IaATNrpd~-LDpA---LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~  368 (437)
T 4b4t_I          325 IMATNKIET-LDPA---LIRPGRIDRKILFENPDLSTKKKILGIHTSK  368 (437)
T ss_dssp             EEEESCSTT-CCTT---SSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred             EEeCCChhh-cCHH---HhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence            999998653 2222   24445442         33344556666665

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.60  E-value=4.1e-15  Score=120.25  Aligned_cols=115  Identities=10%  Similarity=0.066  Sum_probs=67.8

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEE
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI  127 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vii  127 (202)
                      .+.|.+++|+||||||||++|+++|+.+..        +++.+.++.+.....+..............+........||+
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~--------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~  104 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI--------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF  104 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTC--------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            446778999999999999999999999633        455555444433222211111111111111112344568999


Q ss_pred             EecCCCCCh-------------hHHHHHHHhcccCccc------ccccCCceEEEEeeCcCh
Q psy1695         128 FDEVDKFPK-------------GLLDVIIPFIDHHAVY------NQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       128 iDEid~~~~-------------~~~~~L~~~le~~~~~------~~~~~~~~~~Iltsn~~~  170 (202)
                      |||+|++.+             .+++.|+++|+.....      ......++++|+|||...
T Consensus       105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~  166 (293)
T 3t15_A          105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS  166 (293)
T ss_dssp             EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred             EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence            999988765             3568899999854321      112557899999999764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.59  E-value=6e-15  Score=117.19  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=86.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc------
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH------   96 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------   96 (202)
                      .++|++.++..+.+.+......+      .+++|+||||||||++|+++++.+..   .  ..+++.++++.+.      
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~------~~vll~G~~GtGKt~la~~i~~~~~~---~--~~~~~~v~~~~~~~~~~~~   75 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLD------KPVLIIGERGTGKELIASRLHYLSSR---W--QGPFISLNCAALNENLLDS   75 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSC------SCEEEECCTTSCHHHHHHHHHHTSTT---T--TSCEEEEEGGGSCHHHHHH
T ss_pred             cceeCCHHHHHHHHHHHHHhCCC------CCEEEECCCCCcHHHHHHHHHHhcCc---c--CCCeEEEecCCCChhHHHH
Confidence            48899999999988888765432      26899999999999999999998643   2  2244444443321      


Q ss_pred             ---CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcC
Q psy1695          97 ---FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSG  169 (202)
Q Consensus        97 ---~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~  169 (202)
                         +...+.   +... .....+.+.....++++|||++.++.+.++.|+++++++.+...    ....++.+|++||..
T Consensus        76 ~l~g~~~~~---~~g~-~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~  151 (265)
T 2bjv_A           76 ELFGHEAGA---FTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD  151 (265)
T ss_dssp             HHHCCC-------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred             HhcCCcccc---cccc-cccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence               000000   0000 00000112234457999999999999999999999998754321    122467899999997


Q ss_pred             hHHH
Q psy1695         170 GTEI  173 (202)
Q Consensus       170 ~~~i  173 (202)
                      .+.+
T Consensus       152 ~~~~  155 (265)
T 2bjv_A          152 LPAM  155 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.1e-14  Score=121.38  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+.+++.+.+.+...+.++.     +...|.++||+||||||||++|+++|..+..        +++.+..+.+.
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--------~~~~v~~~~l~  243 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--------AFIRVNGSEFV  243 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC--------EEEEEEGGGTC
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CeEEEecchhh
Confidence            4799999999999998876543321     1235668999999999999999999999643        56666665554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------h---hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------K---GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~---~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..   . .....+..........|++|||+|.+.           .   .+.+.|+..|+.-.     +..++++
T Consensus       244 ~~~~Ge~---e-~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----~~~~v~v  314 (428)
T 4b4t_K          244 HKYLGEG---P-RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----QSTNVKV  314 (428)
T ss_dssp             CSSCSHH---H-HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----SSCSEEE
T ss_pred             ccccchh---H-HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----CCCCEEE
Confidence            4333222   1 113334444445556899999995331           1   24555666666421     2367899


Q ss_pred             EEeeCcChHHHHHHHHHHHHhhhHH
Q psy1695         163 LFLSNSGGTEIMNTFLELRKSECIE  187 (202)
Q Consensus       163 Iltsn~~~~~i~~~~~~~~~~~~~r  187 (202)
                      |+|||.... +-.+   +++.||.+
T Consensus       315 I~aTN~~~~-LD~A---llRpGRfd  335 (428)
T 4b4t_K          315 IMATNRADT-LDPA---LLRPGRLD  335 (428)
T ss_dssp             EEEESCSSS-CCHH---HHSSSSEE
T ss_pred             EEecCChhh-cChh---hhcCCcce
Confidence            999997643 2233   34556543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.58  E-value=1.7e-14  Score=117.90  Aligned_cols=134  Identities=18%  Similarity=0.169  Sum_probs=86.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+.+++......+.    ....|.+++|+||||||||++|+++|+.+..        +++.+..+.+..
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~~   89 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSSDLVS   89 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--------EEEEEEHHHHHT
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--------CEEEEchHHHhh
Confidence            4699999999999998865443321    0123457999999999999999999998533        344444443322


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ..   .+... .....+..........||+|||+|.+..           .+++.|+..++...    ....++++|.+|
T Consensus        90 ~~---~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vi~at  161 (322)
T 3eie_A           90 KW---MGESE-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGAT  161 (322)
T ss_dssp             TT---GGGHH-HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCEEEEEEE
T ss_pred             cc---cchHH-HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCceEEEEec
Confidence            22   12111 1133344444555568999999998864           34677777776421    122577888888


Q ss_pred             CcChH
Q psy1695         167 NSGGT  171 (202)
Q Consensus       167 n~~~~  171 (202)
                      |....
T Consensus       162 n~~~~  166 (322)
T 3eie_A          162 NIPWQ  166 (322)
T ss_dssp             SCGGG
T ss_pred             CChhh
Confidence            87543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.6e-14  Score=122.17  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=86.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+.+++.+.+.+...+.++.     +...|.++||+||||||||++|+++|..+..        +++.+..+.+.
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--------~f~~v~~s~l~  252 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--------TFLKLAAPQLV  252 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGGC
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--------CEEEEehhhhh
Confidence            4699999999999998876544322     1234668999999999999999999999643        56666666554


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hh---HHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KG---LLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~---~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..    +.....+..........||||||+|.+.           ..   ..+.|+..|+...     ...++++
T Consensus       253 ~~~vGes----e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----~~~~ViV  323 (434)
T 4b4t_M          253 QMYIGEG----AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----SDDRVKV  323 (434)
T ss_dssp             SSCSSHH----HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----SSCSSEE
T ss_pred             hcccchH----HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----CCCCEEE
Confidence            4433322    1223334444444445799999996541           11   2445565565422     2256788


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |+|||...
T Consensus       324 IaaTNrp~  331 (434)
T 4b4t_M          324 LAATNRVD  331 (434)
T ss_dssp             EEECSSCC
T ss_pred             EEeCCCch
Confidence            89999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=2.3e-14  Score=114.76  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+...+..+.     ....+.+++|+||||||||++|+++|+.+..        +++.+....+.
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~   88 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA--------TFIRVVGSELV   88 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC--------EEEEEEGGGGC
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehHHHH
Confidence            4699999999999988876432210     0124557999999999999999999998533        34444444433


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ....+..   .. ....+..........|++|||+|.+           ....+..|..+++....  .....+.++|+|
T Consensus        89 ~~~~~~~---~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~~~~vI~t  162 (285)
T 3h4m_A           89 KKFIGEG---AS-LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG--FDARGDVKIIGA  162 (285)
T ss_dssp             CCSTTHH---HH-HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT--TCSSSSEEEEEE
T ss_pred             HhccchH---HH-HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC--CCCCCCEEEEEe
Confidence            3322221   11 1223333444455689999999887           44566777776654210  011246788888


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      ||...
T Consensus       163 tn~~~  167 (285)
T 3h4m_A          163 TNRPD  167 (285)
T ss_dssp             CSCGG
T ss_pred             CCCch
Confidence            88653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.57  E-value=3.5e-14  Score=116.18  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      +++.|++.+++.+.+.+...+..+..    ...|.+++|+||||||||++|+++|+.+..       ..++.+..+.+..
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~~i~~~~l~~   84 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVS   84 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-------CEEEEEECCSSCC
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-------CcEEEEEhHHHHh
Confidence            46999999999999988764433210    123457999999999999999999998623       2344444443332


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...+...    .....+..........||||||+|.+.+           .+.+.|+..++.-.    ....++++|.+|
T Consensus        85 ~~~g~~~----~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~v~vI~at  156 (322)
T 1xwi_A           85 KWLGESE----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGAT  156 (322)
T ss_dssp             SSCCSCH----HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----SCCTTEEEEEEE
T ss_pred             hhhhHHH----HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----ccCCCEEEEEec
Confidence            2222211    1123334444455568999999998732           34566666666421    122678888899


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       157 n~~~  160 (322)
T 1xwi_A          157 NIPW  160 (322)
T ss_dssp             SCTT
T ss_pred             CCcc
Confidence            8763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.56  E-value=3.7e-14  Score=116.27  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++|++.+++.+...+........   .+.+++|+||||||||++|+++++.+..        +++.++.....     
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~ia~~~~~--------~~~~~~~~~~~-----   92 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNE---CLDHILFSGPAGLGKTTLANIISYEMSA--------NIKTTAAPMIE-----   92 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTS---CCCCEEEECSTTSSHHHHHHHHHHHTTC--------CEEEEEGGGCC-----
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECcCCCCHHHHHHHHHHHhCC--------CeEEecchhcc-----
Confidence            3699999999999988887654322   3346899999999999999999998533        33333332221     


Q ss_pred             hhHHHHHHhHHHHHHhhh-hCCceEEEEecCCCCChhHHHHHHHhcccCcccc-----------cccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-----------QISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~-~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-----------~~~~~~~~~Iltsn~~  169 (202)
                      ..+        .+...+. .....+++|||++.+++..++.|++.++++.+..           ..+..+.++|.+||..
T Consensus        93 ~~~--------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~  164 (338)
T 3pfi_A           93 KSG--------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRA  164 (338)
T ss_dssp             SHH--------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCG
T ss_pred             chh--------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCc
Confidence            111        1112222 2455899999999999999999999999875321           1234467899999875


Q ss_pred             h
Q psy1695         170 G  170 (202)
Q Consensus       170 ~  170 (202)
                      .
T Consensus       165 ~  165 (338)
T 3pfi_A          165 G  165 (338)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.56  E-value=4.9e-15  Score=122.86  Aligned_cols=133  Identities=18%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+.+++...+..+.    ....+.+++|+||||||||++|+++|+.+..        +++.+..+.+..
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--------~~~~v~~~~l~~  122 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------TFFSVSSSDLVS  122 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC--------EEEEEEHHHHHS
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEeeHHHHhh
Confidence            4699999999999988865433221    0123446999999999999999999999643        344444333322


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...+..   . .....+..........||||||+|.+.+           .+++.|+..|+...    ....++++|.+|
T Consensus       123 ~~~g~~---~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vI~at  194 (355)
T 2qp9_X          123 KWMGES---E-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGVLVLGAT  194 (355)
T ss_dssp             CC---C---H-HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------CCEEEEEEE
T ss_pred             hhcchH---H-HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCCCeEEEeec
Confidence            211111   1 1123333344445568999999998874           24677777776421    112578888899


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       195 n~~~  198 (355)
T 2qp9_X          195 NIPW  198 (355)
T ss_dssp             SCGG
T ss_pred             CCcc
Confidence            8763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.55  E-value=6.2e-14  Score=110.66  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCC-----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~-----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+.. +..+..     ...|.+++|+||||||||++|+++|+.+..        +++.+..+.+.
T Consensus         6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~~~~~~~~   76 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--------PFLAMAGAEFV   76 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------CEEEEETTTTS
T ss_pred             HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEechHHHH
Confidence            4699999999999877654 322210     124557999999999999999999998643        33434333332


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC------------hhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP------------KGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~------------~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                      ....+.   .... ...+..........||+|||+|.+.            ...+..+.++++.-.  ......+.++|.
T Consensus        77 ~~~~~~---~~~~-~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~~~vi~  150 (262)
T 2qz4_A           77 EVIGGL---GAAR-VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD--GMGTTDHVIVLA  150 (262)
T ss_dssp             SSSTTH---HHHH-HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH--TCCTTCCEEEEE
T ss_pred             hhccCh---hHHH-HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh--CcCCCCCEEEEe
Confidence            221111   1111 2223333334446899999999983            233333334433210  001225778888


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      +||...
T Consensus       151 ~tn~~~  156 (262)
T 2qz4_A          151 STNRAD  156 (262)
T ss_dssp             EESCGG
T ss_pred             cCCChh
Confidence            888754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.55  E-value=9.5e-15  Score=127.37  Aligned_cols=147  Identities=19%  Similarity=0.283  Sum_probs=89.4

Q ss_pred             CCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          10 SSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        10 ~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      ..++..+++.|.++++|++.+++.+...+........  -.+.+++|+||||||||++|++++..+..        ++..
T Consensus        69 ~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~--~~g~~vll~Gp~GtGKTtlar~ia~~l~~--------~~~~  138 (543)
T 3m6a_A           69 KLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKS--LKGPILCLAGPPGVGKTSLAKSIAKSLGR--------KFVR  138 (543)
T ss_dssp             CCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS--CCSCEEEEESSSSSSHHHHHHHHHHHHTC--------EEEE
T ss_pred             cccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc--CCCCEEEEECCCCCCHHHHHHHHHHhcCC--------CeEE
Confidence            3456777788899999999999998776654322221  13447999999999999999999999744        2222


Q ss_pred             hhcccccC------CCCchhHHHHHHhHHHHHHhhhhC--CceEEEEecCCCCChh----HHHHHHHhcccCcccc----
Q psy1695          90 KFNSRIHF------PNENHVSLYRLQLTNWIISNVTAC--DRAIFIFDEVDKFPKG----LLDVIIPFIDHHAVYN----  153 (202)
Q Consensus        90 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~l~~~--~~~viiiDEid~~~~~----~~~~L~~~le~~~~~~----  153 (202)
                      +.+.....      ....+++    ...+.+...+...  ..+|++|||++++++.    .++.|+++|+.+....    
T Consensus       139 i~~~~~~~~~~~~g~~~~~ig----~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~  214 (543)
T 3m6a_A          139 ISLGGVRDESEIRGHRRTYVG----AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDH  214 (543)
T ss_dssp             ECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCS
T ss_pred             EEecccchhhhhhhHHHHHhc----cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecc
Confidence            22221111      1111222    1112222222222  3469999999999987    5588999998765321    


Q ss_pred             ----cccCCceEEEEeeCcCh
Q psy1695         154 ----QISFQNTIFLFLSNSGG  170 (202)
Q Consensus       154 ----~~~~~~~~~Iltsn~~~  170 (202)
                          ..+..+++||+|||...
T Consensus       215 ~~~~~~~~~~v~iI~ttN~~~  235 (543)
T 3m6a_A          215 YIEETFDLSKVLFIATANNLA  235 (543)
T ss_dssp             SSCCCCBCSSCEEEEECSSTT
T ss_pred             cCCeeecccceEEEeccCccc
Confidence                13558899999999865

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.54  E-value=3.7e-14  Score=115.20  Aligned_cols=135  Identities=13%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc-----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH-----   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----   96 (202)
                      +.++|++.++..+.+.+......      +.+++|+||||||||++|+++++....   .  ..+++.++++.+.     
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~--~~~~v~v~~~~~~~~l~~   70 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPS------DATVLIHGDSGTGKELVARALHACSAR---S--DRPLVTLNCAALNESLLE   70 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCST------TSCEEEESCTTSCHHHHHHHHHHHSSC---S--SSCCCEEECSSCCHHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHHhCC------CCcEEEECCCCchHHHHHHHHHHhCcc---c--CCCeEEEeCCCCChHHHH
Confidence            46899999999999888876533      236899999999999999999997543   2  2344444443221     


Q ss_pred             ----CCCCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-c---ccCCceEEEEeeC
Q psy1695          97 ----FPNEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q---ISFQNTIFLFLSN  167 (202)
Q Consensus        97 ----~~~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~---~~~~~~~~Iltsn  167 (202)
                          +...+ +.+ ....    ..+.+.....+++||||++.++...+..|+++++++.+.. +   ....++.+|++||
T Consensus        71 ~~lfg~~~g~~tg-~~~~----~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn  145 (304)
T 1ojl_A           71 SELFGHEKGAFTG-ADKR----REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH  145 (304)
T ss_dssp             HHHTCCCSSCCC----CC----CCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred             HHhcCccccccCc-hhhh----hcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence                11110 011 0000    0011222234799999999999999999999999876432 1   1234678999999


Q ss_pred             cChHH
Q psy1695         168 SGGTE  172 (202)
Q Consensus       168 ~~~~~  172 (202)
                      ...+.
T Consensus       146 ~~l~~  150 (304)
T 1ojl_A          146 RDLAE  150 (304)
T ss_dssp             SCHHH
T ss_pred             ccHHH
Confidence            87543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.54  E-value=3.4e-14  Score=115.34  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=82.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+...+...    .   .| +++|+||+|||||++|+++++.+.+   ......++.++.     ..  
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~----~---~~-~~ll~G~~G~GKT~la~~l~~~l~~---~~~~~~~~~~~~-----~~--   86 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNA-----SD--   86 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEET-----TC--
T ss_pred             HHhhCCHHHHHHHHHHHHcC----C---CC-eEEEECcCCCCHHHHHHHHHHHhcC---CcccCceEEeec-----cc--
Confidence            35999999999888776542    1   23 5899999999999999999999765   210111111111     11  


Q ss_pred             hhHHHHHHhHHHHHHhh-----hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         102 HVSLYRLQLTNWIISNV-----TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l-----~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      ..+  ...+...+.+..     ...+..|++|||++.+++..++.|+++++++.       .++.||+++|....
T Consensus        87 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~~  152 (327)
T 1iqp_A           87 ERG--INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSK  152 (327)
T ss_dssp             HHH--HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             cCc--hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCCccc
Confidence            111  011112222211     12456899999999999999999999999876       68889999987543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.54  E-value=1.3e-14  Score=115.71  Aligned_cols=140  Identities=9%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHH---HHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695          15 VLEEQLKQHVHGQELAISHICGA---LKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF   91 (202)
Q Consensus        15 ~l~~~L~~~liGq~~a~~~l~~~---l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~   91 (202)
                      .++..+...++|+..+++.+...   +...+.... ...+.+++|+||||||||++|+++++.+..        +++.+.
T Consensus        26 ~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--------~~~~i~   96 (272)
T 1d2n_A           26 DYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESNF--------PFIKIC   96 (272)
T ss_dssp             CSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHTC--------SEEEEE
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEe
Confidence            34445566799999998888775   333343221 224557999999999999999999998533        334333


Q ss_pred             cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC----------ChhHHHHHHHhcccCcccccccCCceE
Q psy1695          92 NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTI  161 (202)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~----------~~~~~~~L~~~le~~~~~~~~~~~~~~  161 (202)
                      .+.......  ....... ...+.+.....+..+|+|||+|.+          ....++.|..+++...    ....+.+
T Consensus        97 ~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----~~~~~~~  169 (272)
T 1d2n_A           97 SPDKMIGFS--ETAKCQA-MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----PQGRKLL  169 (272)
T ss_dssp             CGGGCTTCC--HHHHHHH-HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----STTCEEE
T ss_pred             CHHHhcCCc--hHHHHHH-HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----CCCCCEE
Confidence            322111111  1101111 122222233355789999999886          4455666666665421    0124566


Q ss_pred             EEEeeCcCh
Q psy1695         162 FLFLSNSGG  170 (202)
Q Consensus       162 ~Iltsn~~~  170 (202)
                      +|.|||...
T Consensus       170 ii~ttn~~~  178 (272)
T 1d2n_A          170 IIGTTSRKD  178 (272)
T ss_dssp             EEEEESCHH
T ss_pred             EEEecCChh
Confidence            778887653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.53  E-value=3.2e-14  Score=116.04  Aligned_cols=117  Identities=13%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++..       .+.|..++++||||||||++|+++++.+..        +++.++.+.     .+
T Consensus        26 ~~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~--------~~~~i~~~~-----~~   85 (324)
T 3u61_B           26 DECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNA--------DMMFVNGSD-----CK   85 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE--------EEEEEETTT-----CC
T ss_pred             HHHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC--------CEEEEcccc-----cC
Confidence            4699999998888777762       124557899999999999999999998633        333333222     11


Q ss_pred             hhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCC-hhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         102 HVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFP-KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~-~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                       ..    .+...+.+....    ....|++|||++.++ .+.++.|+++++++.       .++.||++||...
T Consensus        86 -~~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-------~~~~iI~~~n~~~  147 (324)
T 3u61_B           86 -ID----FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-------SNCSIIITANNID  147 (324)
T ss_dssp             -HH----HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-------GGCEEEEEESSGG
T ss_pred             -HH----HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEeCCcc
Confidence             11    112222222222    245899999999999 999999999999865       6889999999765

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.52  E-value=6.2e-14  Score=119.46  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=82.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+.+++...+..+..    ...|.+++|+||||||||++|+++|+.+..       .+++.+..+.+..
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-------~~~~~v~~~~l~~  206 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-------STFFSISSSDLVS  206 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-------SEEEEECCC----
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-------CCEEEEeHHHHHh
Confidence            46899999999999888653332210    113457999999999999999999999622       2344444333322


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ..   .+ ..+.....+..........||||||+|.+.+           .+++.|+..++...    ....+++||.+|
T Consensus       207 ~~---~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----~~~~~v~vI~at  278 (444)
T 2zan_A          207 KW---LG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----VDNDGILVLGAT  278 (444)
T ss_dssp             ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----CCCSSCEEEEEE
T ss_pred             hh---cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----cCCCCEEEEecC
Confidence            11   11 0011122333344445568999999998832           35677777776521    122678889999


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       279 n~~~  282 (444)
T 2zan_A          279 NIPW  282 (444)
T ss_dssp             SCGG
T ss_pred             CCcc
Confidence            8763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.52  E-value=1.6e-13  Score=104.73  Aligned_cols=122  Identities=18%  Similarity=0.268  Sum_probs=81.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      .+++|++.+++.+...+...        .+.+++|+||+|||||++++.+++.+..   .+....++.+...     ...
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~l~~~~~~---~~~~~~~~~~~~~-----~~~   80 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNAS-----DER   80 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT--------CCCCEEEECSTTSSHHHHHHHHHHHHHG---GGGGGGEEEEETT-----CTT
T ss_pred             HHHcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHhc---cccccceEEeccc-----ccc
Confidence            46899999998887776532        1224899999999999999999998755   2211122222211     111


Q ss_pred             hhHHHHHHhHHHHHHhhh-----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         102 HVSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~-----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ...    .+...+.....     .....+++|||++.+++..++.|+++++...       .++.+|++||...
T Consensus        81 ~~~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~~~~~~  143 (226)
T 2chg_A           81 GID----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS  143 (226)
T ss_dssp             CHH----HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred             ChH----HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence            111    11122222222     2445899999999999999999999999865       6788889988653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.52  E-value=1.4e-13  Score=110.78  Aligned_cols=135  Identities=16%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+.+.+......+..    ...+.+++|+||||||||++|+++++.+..        +++.+..+.+..
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~--------~~~~i~~~~l~~   92 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA--------TFLNISAASLTS   92 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC--------EEEEEESTTTSS
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--------CeEEeeHHHHhh
Confidence            46999999999999888664322110    113457999999999999999999998533        344444443333


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC-----------hhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP-----------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~-----------~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...+...    .....+..........||+|||++.+.           ...++.|+..++.....  ....++++|.+|
T Consensus        93 ~~~~~~~----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~v~vi~~t  166 (297)
T 3b9p_A           93 KYVGDGE----KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--PDGDRIVVLAAT  166 (297)
T ss_dssp             SSCSCHH----HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------CEEEEEEE
T ss_pred             cccchHH----HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--CCCCcEEEEeec
Confidence            2222211    112333344445556899999998874           34566677777654310  112457888888


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       167 n~~~  170 (297)
T 3b9p_A          167 NRPQ  170 (297)
T ss_dssp             SCGG
T ss_pred             CChh
Confidence            8653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.51  E-value=1e-13  Score=113.96  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++||+.+++.+...+...       +.| +++|+||+|||||++|+++++.+.+   ......+...+.     +....
T Consensus        26 ~~~g~~~~~~~L~~~i~~g-------~~~-~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~-----~~~~~   89 (340)
T 1sxj_C           26 EVYGQNEVITTVRKFVDEG-------KLP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNA-----SDDRG   89 (340)
T ss_dssp             GCCSCHHHHHHHHHHHHTT-------CCC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECT-----TSCCS
T ss_pred             HhcCcHHHHHHHHHHHhcC-------CCc-eEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcC-----ccccc
Confidence            5899999988887766531       134 4899999999999999999999876   211111111111     11111


Q ss_pred             hHHHHHHhHHHHHHhhh-----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         103 VSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~-----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      +...    ...+.....     .....|++|||+|.++...++.|++++++++       .++.||+++|...
T Consensus        90 ~~~i----r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~n~~~  151 (340)
T 1sxj_C           90 IDVV----RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYAH  151 (340)
T ss_dssp             HHHH----HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGG
T ss_pred             HHHH----HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-------CCeEEEEEecCcc
Confidence            2111    111211111     1236899999999999999999999999976       7888999998653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.51  E-value=2.2e-13  Score=112.75  Aligned_cols=53  Identities=23%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++||+.+++.+............   .+.+++|+||||||||++|+++++.+..
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKI---AGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCC---CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4689999998887555444333221   2357999999999999999999999754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.50  E-value=9.5e-14  Score=115.11  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=84.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+.+.+...+..+.    ....|.+++|+||||||||++|+++|+.+..        +++.+..+.+..
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--------~~~~i~~~~l~~  155 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA--------TFFSISASSLTS  155 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC--------EEEEEEGGGGCC
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC--------eEEEEehHHhhc
Confidence            4699999999999998876433221    0124557999999999999999999998532        455555544433


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...+.   ... ....+..........||||||+|.+..           .+++.|+..++....   ....+.++|.+|
T Consensus       156 ~~~g~---~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~~v~vI~at  228 (357)
T 3d8b_A          156 KWVGE---GEK-MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---SSEDRILVVGAT  228 (357)
T ss_dssp             SSTTH---HHH-HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------CCCCEEEEEEE
T ss_pred             cccch---HHH-HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---cCCCCEEEEEec
Confidence            22221   111 123333444445568999999987733           356677777764210   112577888899


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       229 n~~~  232 (357)
T 3d8b_A          229 NRPQ  232 (357)
T ss_dssp             SCGG
T ss_pred             CChh
Confidence            8753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=115.82  Aligned_cols=134  Identities=15%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCC----CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYH----NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      ++++|++.+++.+...+......+..    ...+.+++|+||||||||++|+++|+.+..        +++.+....+..
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~--------~~~~v~~~~l~~  186 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA--------TFFNISAASLTS  186 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEECSCCC--
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------cEEEeeHHHhhc
Confidence            36999999999999888664432110    113457999999999999999999998532        455555544433


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC-----------ChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF-----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~-----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                      ...+.   ... ....+..........||||||+|.+           ...+++.|+..++...   .....+++||.+|
T Consensus       187 ~~~g~---~~~-~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~v~vI~at  259 (389)
T 3vfd_A          187 KYVGE---GEK-LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---SAGDDRVLVMGAT  259 (389)
T ss_dssp             --------CHH-HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------CEEEEEEE
T ss_pred             cccch---HHH-HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc---ccCCCCEEEEEec
Confidence            22111   111 1233333444455589999999887           3356667777776421   0112568889999


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       260 n~~~  263 (389)
T 3vfd_A          260 NRPQ  263 (389)
T ss_dssp             SCGG
T ss_pred             CCch
Confidence            8743

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=5.2e-14  Score=114.36  Aligned_cols=120  Identities=8%  Similarity=0.104  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSL  105 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (202)
                      ||+++++.+.+++...        ++.+++|+||+|+|||++|+++++.... . .....++..++.     . ....+ 
T Consensus         1 g~~~~~~~L~~~i~~~--------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~-~-~~~~~d~~~l~~-----~-~~~~~-   63 (305)
T 2gno_A            1 GAKDQLETLKRIIEKS--------EGISILINGEDLSYPREVSLELPEYVEK-F-PPKASDVLEIDP-----E-GENIG-   63 (305)
T ss_dssp             ---CHHHHHHHHHHTC--------SSEEEEEECSSSSHHHHHHHHHHHHHHT-S-CCCTTTEEEECC-----S-SSCBC-
T ss_pred             ChHHHHHHHHHHHHCC--------CCcEEEEECCCCCCHHHHHHHHHHhCch-h-hccCCCEEEEcC-----C-cCCCC-
Confidence            7888888887777642        2347999999999999999999986321 0 000112222211     1 11121 


Q ss_pred             HHHHhHHHHHHhhhhC----CceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         106 YRLQLTNWIISNVTAC----DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       106 ~~~~l~~~~~~~l~~~----~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .. + .+.+.+.+...    ++.|+||||+|+|+.+++|.|++.||+++       .+++||++||...+
T Consensus        64 id-~-ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-------~~t~fIl~t~~~~k  124 (305)
T 2gno_A           64 ID-D-IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWHY  124 (305)
T ss_dssp             HH-H-HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGGG
T ss_pred             HH-H-HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-------CCeEEEEEECChHh
Confidence            11 1 22233334333    35899999999999999999999999988       89999999986543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.48  E-value=3.7e-13  Score=114.98  Aligned_cols=52  Identities=25%  Similarity=0.197  Sum_probs=42.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++||+.+++.+...+.....+..   .|.+++|+||||||||++|+++|+.+.
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~---~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKM---AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCC---TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCC---CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            5799999999998877765543322   445799999999999999999999975

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.48  E-value=1.6e-13  Score=102.46  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~   99 (202)
                      +.++|++..++.+...+..    .    .+.+++|+||+|||||++|+.+++.+.+.....  ....++.+....+... 
T Consensus        22 ~~~~g~~~~~~~l~~~l~~----~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   92 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQR----R----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-   92 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTS----S----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT-
T ss_pred             cccccchHHHHHHHHHHhc----C----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc-
Confidence            4689999988888776654    1    333689999999999999999999975410000  0112222222221111 


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ....+.....+...+..........|++|||++.+.        ..+++.|..+++.         .+..+|++||...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------~~~~~i~~~~~~~  162 (195)
T 1jbk_A           93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------GELHCVGATTLDE  162 (195)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------TSCCEEEEECHHH
T ss_pred             CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------CCeEEEEeCCHHH
Confidence            111221222222222222223345699999999985        4557888888776         4677888887543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.48  E-value=6.3e-14  Score=113.40  Aligned_cols=124  Identities=17%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +++||+.+++.+...+..    .   +.| +++|+||+|||||++|+++++.+.+   .+....++.++.+...+.  ..
T Consensus        18 ~~~g~~~~~~~l~~~l~~----~---~~~-~~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~~~~~~~--~~   84 (319)
T 2chq_A           18 EVVGQDEVIQRLKGYVER----K---NIP-HLLFSGPPGTGKTATAIALARDLFG---ENWRDNFIEMNASDERGI--DV   84 (319)
T ss_dssp             GSCSCHHHHHHHHTTTTT----T---CCC-CEEEESSSSSSHHHHHHHHHHHHHT---TCHHHHCEEEETTSTTCT--TT
T ss_pred             HHhCCHHHHHHHHHHHhC----C---CCC-eEEEECcCCcCHHHHHHHHHHHhcC---CcccCCeEEEeCccccCh--HH
Confidence            599999988877655542    1   133 4899999999999999999999765   221122333322221110  01


Q ss_pred             hHHHHHHhHHHHHHh--hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         103 VSLYRLQLTNWIISN--VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~--l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      +.   +. .......  +...+..|++|||++.++...++.|++++++.+       .++.+|++||...
T Consensus        85 ~~---~~-~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-------~~~~~i~~~~~~~  143 (319)
T 2chq_A           85 VR---HK-IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-------KSCRFILSCNYVS  143 (319)
T ss_dssp             SS---HH-HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-------SSEEEEEEESCGG
T ss_pred             HH---HH-HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChh
Confidence            11   10 1111111  112446899999999999999999999999866       7889999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.47  E-value=8.5e-14  Score=112.78  Aligned_cols=132  Identities=15%  Similarity=0.213  Sum_probs=80.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+...+..+.     .-..|.+++|+||||||||++|+++|+.+..        +++.+..+.+.
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~--------~~i~v~~~~l~   86 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELL   86 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--------EEEEECHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC--------CEEEEEhHHHH
Confidence            3699999999999988875322110     0123457999999999999999999998532        33333322211


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      .   .+.+..... ...+..........|++|||+|.+..              .+++.|+..|+.-.     ...++++
T Consensus        87 ~---~~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----~~~~v~v  157 (301)
T 3cf0_A           87 T---MWFGESEAN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFI  157 (301)
T ss_dssp             H---HHHTTCTTH-HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----TTSSEEE
T ss_pred             h---hhcCchHHH-HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----CCCCEEE
Confidence            0   000000000 12222333334458999999987543              34677888887421     2257889


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.+||...
T Consensus       158 i~atn~~~  165 (301)
T 3cf0_A          158 IGATNRPD  165 (301)
T ss_dssp             EEEESCGG
T ss_pred             EEecCCcc
Confidence            99998763

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.47  E-value=8.2e-14  Score=120.08  Aligned_cols=139  Identities=16%  Similarity=0.164  Sum_probs=86.6

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF   91 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~   91 (202)
                      .+..+.+.+.+.++||+.+++.+..++...    .      +++|+||||||||++|+++|+.+..   .   ..+....
T Consensus        12 ~~~~l~~~l~~~ivGq~~~i~~l~~al~~~----~------~VLL~GpPGtGKT~LAraLa~~l~~---~---~~f~~~~   75 (500)
T 3nbx_X           12 RISRLSSSLEKGLYERSHAIRLCLLAALSG----E------SVFLLGPPGIAKSLIARRLKFAFQN---A---RAFEYLM   75 (500)
T ss_dssp             HHHHHHHHHHTTCSSCHHHHHHHHHHHHHT----C------EEEEECCSSSSHHHHHHHGGGGBSS---C---CEEEEEC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC----C------eeEeecCchHHHHHHHHHHHHHHhh---h---hHHHHHH
Confidence            467888999999999999998876665432    2      6899999999999999999998632   1   1111110


Q ss_pred             c-----ccccCCCCchhHHHHHHhHHHHHHhhhhC---CceEEEEecCCCCChhHHHHHHHhcccCcccc-c--ccCCce
Q psy1695          92 N-----SRIHFPNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--ISFQNT  160 (202)
Q Consensus        92 ~-----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~---~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~--~~~~~~  160 (202)
                      .     +.+.+..... . ...  .+.+ ......   ..+|++|||++++++.+++.|+++|+++.+.. +  ......
T Consensus        76 ~~~~t~~dL~G~~~~~-~-~~~--~g~~-~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~  150 (500)
T 3nbx_X           76 TRFSTPEEVFGPLSIQ-A-LKD--EGRY-ERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMR  150 (500)
T ss_dssp             CTTCCHHHHHCCBC---------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCC
T ss_pred             HhcCCHHHhcCcccHH-H-Hhh--chhH-HhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchh
Confidence            0     1111110000 0 000  0010 001111   13689999999999999999999999887542 2  233344


Q ss_pred             EEEEeeCcChH
Q psy1695         161 IFLFLSNSGGT  171 (202)
Q Consensus       161 ~~Iltsn~~~~  171 (202)
                      ++|++||..++
T Consensus       151 ~iI~ATN~lpe  161 (500)
T 3nbx_X          151 LLVAASNELPE  161 (500)
T ss_dssp             EEEEEESSCCC
T ss_pred             hhhhccccCCC
Confidence            56888986443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.47  E-value=2.3e-13  Score=111.82  Aligned_cols=129  Identities=6%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhh------hcc
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHK------FNS   93 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~------~~~   93 (202)
                      ..|+.+.+.+..++...       +.|.+++|+||+|+|||++|+++|+.+.+....     +.+..+..+      +..
T Consensus         5 pw~~~~~~~l~~~i~~~-------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~   77 (334)
T 1a5t_A            5 PWLRPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY   77 (334)
T ss_dssp             GGGHHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE
T ss_pred             CchHHHHHHHHHHHHcC-------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence            45677777766665531       245579999999999999999999999873111     000111111      111


Q ss_pred             cccCCC-CchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          94 RIHFPN-ENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        94 ~~~~~~-~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      .+.... ....+ . ++ ...+.+.+..    +++.|+||||+|+|+.+++|.|++.+|+++       .+++||++||.
T Consensus        78 ~~~~~~~~~~~~-i-~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-------~~~~~Il~t~~  147 (334)
T 1a5t_A           78 TLAPEKGKNTLG-V-DA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFLATRE  147 (334)
T ss_dssp             EECCCTTCSSBC-H-HH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEEEESC
T ss_pred             EEeccccCCCCC-H-HH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-------CCeEEEEEeCC
Confidence            111110 11121 1 11 2233333333    345899999999999999999999999987       78999999987


Q ss_pred             Ch
Q psy1695         169 GG  170 (202)
Q Consensus       169 ~~  170 (202)
                      ..
T Consensus       148 ~~  149 (334)
T 1a5t_A          148 PE  149 (334)
T ss_dssp             GG
T ss_pred             hH
Confidence            53

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.47  E-value=7.2e-14  Score=114.79  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=79.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++..    ..   .| +++|+||||||||++|+++++.+.+.  ......+...+.     ....
T Consensus        37 ~~i~g~~~~~~~l~~~l~~----~~---~~-~~ll~G~~G~GKT~la~~la~~l~~~--~~~~~~~~~~~~-----~~~~  101 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKS----AN---LP-HMLFYGPPGTGKTSTILALTKELYGP--DLMKSRILELNA-----SDER  101 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTC----TT---CC-CEEEECSTTSSHHHHHHHHHHHHHHH--HHHTTSEEEECS-----SSCC
T ss_pred             HHhhCCHHHHHHHHHHHhc----CC---CC-EEEEECCCCCCHHHHHHHHHHHhCCC--cccccceEEEcc-----cccc
Confidence            4699999998877666542    11   23 48999999999999999999997541  000011111111     1111


Q ss_pred             hhHHHHHHhHHHHHHh------------hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISN------------VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~------------l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ......+. .......            .......|++|||++.+++..++.|+++++++.       .++.||+++|..
T Consensus       102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------~~~~~il~~~~~  173 (353)
T 1sxj_D          102 GISIVREK-VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYV  173 (353)
T ss_dssp             CHHHHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCG
T ss_pred             chHHHHHH-HHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------CCceEEEEeCch
Confidence            11111111 1111110            011234799999999999999999999999876       678899999866


Q ss_pred             hH
Q psy1695         170 GT  171 (202)
Q Consensus       170 ~~  171 (202)
                      ..
T Consensus       174 ~~  175 (353)
T 1sxj_D          174 TR  175 (353)
T ss_dssp             GG
T ss_pred             hh
Confidence            53

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.47  E-value=2.7e-13  Score=110.20  Aligned_cols=124  Identities=13%  Similarity=0.157  Sum_probs=83.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++|++.+++.+...+........   .+.+++|+||+|||||++|+++++.+..        +++.+..+.+     .
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~---~~~~vll~G~~GtGKT~la~~i~~~~~~--------~~~~~~~~~~-----~   75 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELGV--------NLRVTSGPAI-----E   75 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCS---CCCCCEEECCTTCCCHHHHHHHHHHHTC--------CEEEECTTTC-----C
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCC---CCCcEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEecccc-----C
Confidence            3699999999999888876543321   3346899999999999999999998633        2222222211     1


Q ss_pred             hhHHHHHHhHHHHHHhhhh--CCceEEEEecCCCCChhHHHHHHHhcccCcccc--c---------ccCCceEEEEeeCc
Q psy1695         102 HVSLYRLQLTNWIISNVTA--CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN--Q---------ISFQNTIFLFLSNS  168 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~--~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~--~---------~~~~~~~~Iltsn~  168 (202)
                      ..        ..+.+.+..  ....++||||++.++...++.|+++++++.+..  +         ....+..+|++||.
T Consensus        76 ~~--------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~  147 (324)
T 1hqc_A           76 KP--------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR  147 (324)
T ss_dssp             SH--------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred             Ch--------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence            11        112223333  345799999999999999999999999865321  0         12235678888885


Q ss_pred             C
Q psy1695         169 G  169 (202)
Q Consensus       169 ~  169 (202)
                      .
T Consensus       148 ~  148 (324)
T 1hqc_A          148 P  148 (324)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.46  E-value=1.9e-13  Score=110.69  Aligned_cols=125  Identities=15%  Similarity=0.275  Sum_probs=81.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+...+..    .   +.|. ++|+||+|+|||++|+.+++.+.+   ......++..+.     ....
T Consensus        21 ~~~~g~~~~~~~l~~~l~~----~---~~~~-~ll~G~~G~GKt~la~~l~~~l~~---~~~~~~~~~~~~-----~~~~   84 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKD----G---NMPH-MIISGMPGIGKTTSVHCLAHELLG---RSYADGVLELNA-----SDDR   84 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHS----C---CCCC-EEEECSTTSSHHHHHHHHHHHHHG---GGHHHHEEEECT-----TSCC
T ss_pred             HHHHCCHHHHHHHHHHHHc----C---CCCe-EEEECcCCCCHHHHHHHHHHHhcC---CcccCCEEEecC-----cccc
Confidence            3699999999888777653    1   1343 899999999999999999999765   211111221111     1111


Q ss_pred             hhHHHHHHhHHHHHH---hhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         102 HVSLYRLQLTNWIIS---NVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~---~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      ......+ +...+..   .+...+..|+||||++.++...++.|+++++++.       .++.||++||...
T Consensus        85 ~~~~i~~-~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-------~~~~~il~~~~~~  148 (323)
T 1sxj_B           85 GIDVVRN-QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQSN  148 (323)
T ss_dssp             SHHHHHT-HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCGG
T ss_pred             ChHHHHH-HHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-------CCceEEEEeCChh
Confidence            1221111 1111110   0102346899999999999999999999999876       7888999987643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.46  E-value=1.2e-13  Score=103.03  Aligned_cols=130  Identities=15%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc--CccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK--GTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~   99 (202)
                      +.++|++.+++.+.+.+..    .    .+.+++|+||+|||||++|+.+++.+.......  ....++.+....+... 
T Consensus        22 ~~~~g~~~~~~~l~~~l~~----~----~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   92 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSR----R----TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG-   92 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTS----S----SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH-
T ss_pred             chhhcchHHHHHHHHHHhC----C----CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC-
Confidence            4689999988888776643    1    233689999999999999999999975410000  0111221211111100 


Q ss_pred             CchhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC---------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         100 ENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP---------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~---------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      ....+.....+. .+...+... ...+++|||++.+.         ..+++.|..++++         .+..+|+++|..
T Consensus        93 ~~~~~~~~~~~~-~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------~~~~ii~~~~~~  162 (187)
T 2p65_A           93 AKYRGDFEERLK-SILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------GELRCIGATTVS  162 (187)
T ss_dssp             CCSHHHHHHHHH-HHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------TCSCEEEEECHH
T ss_pred             CCchhHHHHHHH-HHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------CCeeEEEecCHH
Confidence            011111111112 222233333 44699999999986         5678888888876         567788888865


Q ss_pred             h
Q psy1695         170 G  170 (202)
Q Consensus       170 ~  170 (202)
                      .
T Consensus       163 ~  163 (187)
T 2p65_A          163 E  163 (187)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.46  E-value=2.4e-13  Score=115.82  Aligned_cols=105  Identities=24%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             hhCCChHHHH---HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCC
Q psy1695          22 QHVHGQELAI---SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFP   98 (202)
Q Consensus        22 ~~liGq~~a~---~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
                      ++++||+.++   ..+...+...        ++.+++|+||||||||++|+++++.+..        .++.+....    
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~~--------~f~~l~a~~----   85 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYANA--------DVERISAVT----   85 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTTC--------EEEEEETTT----
T ss_pred             HHhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEEecc----
Confidence            4699999998   6666666542        2237999999999999999999998643        233222111    


Q ss_pred             CCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695          99 NENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus        99 ~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                        .......+. ..............|+||||+++++...++.|++.++++
T Consensus        86 --~~~~~ir~~-~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~  133 (447)
T 3pvs_A           86 --SGVKEIREA-IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG  133 (447)
T ss_dssp             --CCHHHHHHH-HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT
T ss_pred             --CCHHHHHHH-HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC
Confidence              111111111 111112222345689999999999999999999999984

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.45  E-value=2.5e-13  Score=116.97  Aligned_cols=132  Identities=16%  Similarity=0.195  Sum_probs=86.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+...+..+.     ....|.+++|+||||||||++|+++++.+.        .+++.++++.+.
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--------~~fv~vn~~~l~  275 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPEIM  275 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--------SEEEEEEHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--------CCEEEEEchHhh
Confidence            3699999999999988876432210     012455799999999999999999999852        355555554443


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ....+.   ....+...+ .........+|||||+|.+.+           .+++.|+.+|+...     ...+.++|.+
T Consensus       276 ~~~~g~---~~~~~~~~f-~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaa  346 (489)
T 3hu3_A          276 SKLAGE---SESNLRKAF-EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAA  346 (489)
T ss_dssp             TSCTTH---HHHHHHHHH-HHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEE
T ss_pred             hhhcch---hHHHHHHHH-HHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEe
Confidence            322221   111222222 223344457999999965543           57888999988532     2257888899


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      ||...
T Consensus       347 Tn~~~  351 (489)
T 3hu3_A          347 TNRPN  351 (489)
T ss_dssp             ESCGG
T ss_pred             cCCcc
Confidence            98763

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.45  E-value=6.7e-13  Score=112.51  Aligned_cols=67  Identities=22%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC---C---CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY---H---NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~---~---~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .....+.+.|++.|+||+.+++.+..++...+....   .   ...|.+++|+||||||||++|+++|+.+..
T Consensus         4 ~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A            4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            467889999999999999999999999866422110   0   013457999999999999999999998643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.43  E-value=5e-13  Score=110.50  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccC-----cCccchhhhhc----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKD-----KGTSRFVHKFN----   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~-----~~~~~~~~~~~----   92 (202)
                      ++++||+.+++.+..++...       +.|..++|+||+|||||++|+++++.+.+....     +....+..+..    
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~-------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV   88 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHT-------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCS
T ss_pred             hhccCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCC
Confidence            35999999999888877642       134478999999999999999999998652110     00001111100    


Q ss_pred             --ccccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          93 --SRIHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        93 --~~~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                        ..+.........    . ...+.+.+..    ....|++|||++.++...++.|++.+++.+       .++++|++|
T Consensus        89 ~~~~~~~~~~~~~~----~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-------~~~~~Il~~  156 (373)
T 1jr3_A           89 DLIEIDAASRTKVE----D-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLAT  156 (373)
T ss_dssp             SCEEEETTCSCCSS----C-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-------SSEEEEEEE
T ss_pred             ceEEecccccCCHH----H-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-------CceEEEEEe
Confidence              000000001111    1 1222233332    235899999999999999999999999866       788899998


Q ss_pred             CcCh
Q psy1695         167 NSGG  170 (202)
Q Consensus       167 n~~~  170 (202)
                      |...
T Consensus       157 ~~~~  160 (373)
T 1jr3_A          157 TDPQ  160 (373)
T ss_dssp             SCGG
T ss_pred             CChH
Confidence            7544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.42  E-value=2.3e-12  Score=110.42  Aligned_cols=131  Identities=20%  Similarity=0.200  Sum_probs=81.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhcc-----CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNR-----YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~-----~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+... ..+     -+...|.+++|+||||||||++|++++..+..        +++.+..+.+.
T Consensus        16 ~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--------~f~~is~~~~~   86 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--------PFFHISGSDFV   86 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--------CEEEEEGGGTT
T ss_pred             HHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--------CeeeCCHHHHH
Confidence            36999999999998877653 211     01234557999999999999999999998532        34444444332


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+..   ... ...+..........||||||+|.+..              ..++.|+..|+.-.     ...+.++
T Consensus        87 ~~~~g~~---~~~-~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----~~~~viV  157 (476)
T 2ce7_A           87 ELFVGVG---AAR-VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----SKEGIIV  157 (476)
T ss_dssp             TCCTTHH---HHH-HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----GGGTEEE
T ss_pred             HHHhccc---HHH-HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----CCCCEEE
Confidence            2222111   111 22233333344457999999988754              24566776666311     1257888


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.+||...
T Consensus       158 IaaTn~~~  165 (476)
T 2ce7_A          158 MAATNRPD  165 (476)
T ss_dssp             EEEESCGG
T ss_pred             EEecCChh
Confidence            99998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.42  E-value=8.7e-13  Score=101.78  Aligned_cols=132  Identities=14%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhcc---
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNS---   93 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~---   93 (202)
                      +.++|++.+++.+..++...       +.|..++|+||+|+|||++++.+++.+........     ...+......   
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~-------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV   95 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHT-------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCS
T ss_pred             HHHhCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCc
Confidence            46999999999888777642       13346899999999999999999998755110000     0000000000   


Q ss_pred             ccc-CCCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          94 RIH-FPNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        94 ~~~-~~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      .+. ........  ... ...+...+.    .....+|+|||++.+++..++.|++.+++..       .+..+|++||.
T Consensus        96 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-------~~~~~i~~t~~  165 (250)
T 1njg_A           96 DLIEIDAASRTK--VED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLATTD  165 (250)
T ss_dssp             SEEEEETTCGGG--HHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEESC
T ss_pred             ceEEecCccccc--HHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-------CceEEEEEeCC
Confidence            000 00011111  111 122222222    1234799999999999999999999998764       67888888876


Q ss_pred             Ch
Q psy1695         169 GG  170 (202)
Q Consensus       169 ~~  170 (202)
                      ..
T Consensus       166 ~~  167 (250)
T 1njg_A          166 PQ  167 (250)
T ss_dssp             GG
T ss_pred             hH
Confidence            44

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.40  E-value=7.6e-13  Score=119.33  Aligned_cols=132  Identities=15%  Similarity=0.175  Sum_probs=86.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|-|.+.+++.+.+.+.-.+.++.     ....|.++||+||||||||++|+++|+.+..        .++.+..+.+.
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--------~~~~v~~~~l~  275 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--------FFFLINGPEIM  275 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--------EEEEEEHHHHH
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--------eEEEEEhHHhh
Confidence            4689999999999988876444332     1235678999999999999999999998533        45555544443


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ....+.   .... ...+.+........||+|||+|.+-+           .+.+.|+..|+.-.     +..++++|.+
T Consensus       276 sk~~ge---se~~-lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----~~~~V~VIaa  346 (806)
T 3cf2_A          276 SKLAGE---SESN-LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAA  346 (806)
T ss_dssp             SSCTTH---HHHH-HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----GGGCEEEEEE
T ss_pred             cccchH---HHHH-HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----ccCCEEEEEe
Confidence            332222   2222 23333334445568999999987743           25666777776532     2256788888


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      ||...
T Consensus       347 TN~~d  351 (806)
T 3cf2_A          347 TNRPN  351 (806)
T ss_dssp             CSSTT
T ss_pred             cCChh
Confidence            88764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.40  E-value=2e-12  Score=102.06  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+.. +..+.     ....|.+++|+||||||||++|+++++.+..        +++.+....+.
T Consensus        12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~i~~~~~~   82 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--------PFFTISGSDFV   82 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--------CEEEECSCSST
T ss_pred             HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--------CEEEEeHHHHH
Confidence            4699999999999877654 22211     0123557999999999999999999998532        23333333332


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+...   .. ...+.+........+++|||+|.+..              ..++.++..++...     ...+.++
T Consensus        83 ~~~~~~~~---~~-~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~v  153 (257)
T 1lv7_A           83 EMFVGVGA---SR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIV  153 (257)
T ss_dssp             TSCCCCCH---HH-HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEE
T ss_pred             HHhhhhhH---HH-HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEE
Confidence            21111111   11 12222223333457999999966543              24455665555321     2256788


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.+||...
T Consensus       154 I~~tn~~~  161 (257)
T 1lv7_A          154 IAATNRPD  161 (257)
T ss_dssp             EEEESCTT
T ss_pred             EEeeCCch
Confidence            88888763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.39  E-value=1.3e-13  Score=109.53  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.+++.+.+.+.. +..+.     ....|.+++|+||||||||++|+++|+.+..        +++.+....+.
T Consensus        11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~   81 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--------PFFSMGGSSFI   81 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--------CCCCCCSCTTT
T ss_pred             HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------CEEEechHHHH
Confidence            3599999999999887764 21110     0123446899999999999999999998643        23333322221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh---------------HHHHHHHhcccCcccccccCCceE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG---------------LLDVIIPFIDHHAVYNQISFQNTI  161 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~---------------~~~~L~~~le~~~~~~~~~~~~~~  161 (202)
                      ....+...   ..+. .+.+........|++|||+|.+...               .++.|+..++...    ....+.+
T Consensus        82 ~~~~~~~~---~~~~-~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~  153 (268)
T 2r62_A           82 EMFVGLGA---SRVR-DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----SENAPVI  153 (268)
T ss_dssp             TSCSSSCS---SSSS-TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----CSCSCCE
T ss_pred             HhhcchHH---HHHH-HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----cCCCCEE
Confidence            11111000   0000 1111122334579999999988653               3444555554321    1224578


Q ss_pred             EEEeeCcCh
Q psy1695         162 FLFLSNSGG  170 (202)
Q Consensus       162 ~Iltsn~~~  170 (202)
                      +|.|||...
T Consensus       154 vi~ttn~~~  162 (268)
T 2r62_A          154 VLAATNRPE  162 (268)
T ss_dssp             EEECBSCCT
T ss_pred             EEEecCCch
Confidence            888988774

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.37  E-value=1.5e-12  Score=106.43  Aligned_cols=134  Identities=15%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN   92 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~   92 (202)
                      +..+...+.+.++||+.+++.+..++..    ..      +++|+||||||||++|+++++.+..        ++..+.+
T Consensus        18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~----~~------~vll~G~pGtGKT~la~~la~~~~~--------~~~~i~~   79 (331)
T 2r44_A           18 IKEVIDEVGKVVVGQKYMINRLLIGICT----GG------HILLEGVPGLAKTLSVNTLAKTMDL--------DFHRIQF   79 (331)
T ss_dssp             HHHHHHHHTTTCCSCHHHHHHHHHHHHH----TC------CEEEESCCCHHHHHHHHHHHHHTTC--------CEEEEEC
T ss_pred             HHHHHHHhccceeCcHHHHHHHHHHHHc----CC------eEEEECCCCCcHHHHHHHHHHHhCC--------CeEEEec
Confidence            5667788888999999999888776654    22      6899999999999999999998643        1111111


Q ss_pred             ccccCCCCchhHH--HHHHhHHHHHHhhhhCC--ceEEEEecCCCCChhHHHHHHHhcccCcccc-c--c-cCCceEEEE
Q psy1695          93 SRIHFPNENHVSL--YRLQLTNWIISNVTACD--RAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-Q--I-SFQNTIFLF  164 (202)
Q Consensus        93 ~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~--~~viiiDEid~~~~~~~~~L~~~le~~~~~~-~--~-~~~~~~~Il  164 (202)
                      .... ......+.  +... .+..  .+...+  .+|++|||++++++..++.|++.++++.+.. +  . .-.+.++|.
T Consensus        80 ~~~~-~~~~l~g~~~~~~~-~~~~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via  155 (331)
T 2r44_A           80 TPDL-LPSDLIGTMIYNQH-KGNF--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA  155 (331)
T ss_dssp             CTTC-CHHHHHEEEEEETT-TTEE--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred             CCCC-ChhhcCCceeecCC-CCce--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence            0000 00000000  0000 0000  011111  2699999999999999999999999876432 1  1 123456677


Q ss_pred             eeCc
Q psy1695         165 LSNS  168 (202)
Q Consensus       165 tsn~  168 (202)
                      |+|.
T Consensus       156 t~np  159 (331)
T 2r44_A          156 TQNP  159 (331)
T ss_dssp             EECT
T ss_pred             ecCC
Confidence            7774

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.37  E-value=1.2e-13  Score=124.58  Aligned_cols=143  Identities=15%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      .+.|.+.+++.+.+.+...+.++.     ....|.++||+||||||||.+|+++|.++..        +++.+..+.+..
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------~f~~v~~~~l~s  549 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELLT  549 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--------EEEECCHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--------ceEEeccchhhc
Confidence            577889999998888765433321     1234557999999999999999999999533        455554444433


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEEE
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                      .+.+...    .....+....+.....||||||+|.+-.              .+.+.|+..|+.-.     ...++++|
T Consensus       550 ~~vGese----~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----~~~~V~vi  620 (806)
T 3cf2_A          550 MWFGESE----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII  620 (806)
T ss_dssp             TTCSSCH----HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----SSSSEEEE
T ss_pred             cccchHH----HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----CCCCEEEE
Confidence            3322211    1133444445555568999999987632              25677887777532     22567778


Q ss_pred             EeeCcChHHHHHHHHHHHHhhhH
Q psy1695         164 FLSNSGGTEIMNTFLELRKSECI  186 (202)
Q Consensus       164 ltsn~~~~~i~~~~~~~~~~~~~  186 (202)
                      .+||... .+-.+   +++.||.
T Consensus       621 ~aTN~p~-~lD~A---llRpgRf  639 (806)
T 3cf2_A          621 GATNRPD-IIDPA---ILRPGRL  639 (806)
T ss_dssp             CC-CCSS-SSCHH---HHSTTTS
T ss_pred             EeCCCch-hCCHh---HcCCCcc
Confidence            8888764 33333   3455554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.35  E-value=2.7e-12  Score=105.62  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC--c
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG--T   84 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~--~   84 (202)
                      |+.+|+...+     ++++||+.+++.+.+++.   ..   .+.|. ++|+||+|+|||++++++++.+.+......  .
T Consensus         4 w~~kyrP~~~-----~~~vg~~~~~~~l~~~~~---~~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~   71 (354)
T 1sxj_E            4 WVDKYRPKSL-----NALSHNEELTNFLKSLSD---QP---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID   71 (354)
T ss_dssp             CTTTTCCCSG-----GGCCSCHHHHHHHHTTTT---CT---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred             chhccCCCCH-----HHhcCCHHHHHHHHHHHh---hC---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence            3445555544     359999988877655541   22   12444 899999999999999999997655210000  0


Q ss_pred             -cch-------hhh------hcccccCCCCchhHHHHHHhHHHHHHhhh-------------hCCceEEEEecCCCCChh
Q psy1695          85 -SRF-------VHK------FNSRIHFPNENHVSLYRLQLTNWIISNVT-------------ACDRAIFIFDEVDKFPKG  137 (202)
Q Consensus        85 -~~~-------~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------------~~~~~viiiDEid~~~~~  137 (202)
                       ..+       ...      ....+.....+...  ...+...+.....             ..+..|++|||++.+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~  149 (354)
T 1sxj_E           72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNND--RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD  149 (354)
T ss_dssp             --------------CCEECSSEEEECCC----CC--HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH
T ss_pred             ceeecccccccceeeeecccceEEecHhhcCCcc--hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH
Confidence             000       000      00000001000000  0001111211111             124579999999999999


Q ss_pred             HHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         138 LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       138 ~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .++.|++.+++..       .++.||++||....
T Consensus       150 ~~~~L~~~le~~~-------~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          150 AQAALRRTMEKYS-------KNIRLIMVCDSMSP  176 (354)
T ss_dssp             HHHHHHHHHHHST-------TTEEEEEEESCSCS
T ss_pred             HHHHHHHHHHhhc-------CCCEEEEEeCCHHH
Confidence            9999999999865       67889999987543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.33  E-value=5.7e-12  Score=102.68  Aligned_cols=137  Identities=8%  Similarity=0.058  Sum_probs=82.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCc-C-ccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G-TSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~  100 (202)
                      .+.|++.-++.+..++...+...    .|.+++++||||||||++++.+++.+....... . .-.++.+++..+..+..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~----~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~   96 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSS----QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA   96 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT----CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence            48899999999999999887653    566899999999999999999999986411010 0 11223333222111000


Q ss_pred             ch-------------hHHHHHHhHHHHHHhh--hhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695         101 NH-------------VSLYRLQLTNWIISNV--TACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus       101 ~~-------------~~~~~~~l~~~~~~~l--~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      .+             .+...+.+ ..+...+  ......|++|||+|.+.  .++.|..+++-..    .+..+.++|++
T Consensus        97 ~~~~I~~~L~g~~~~~~~~~~~L-~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----~~~s~~~vI~i  169 (318)
T 3te6_A           97 LYEKIWFAISKENLCGDISLEAL-NFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----SKNSKLSIICV  169 (318)
T ss_dssp             HHHHHHHHHSCCC--CCCCHHHH-HHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----CSSCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCchHHHHHH-HHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc----ccCCcEEEEEE
Confidence            00             00000111 1111221  22345799999999998  5677777765211    12367899999


Q ss_pred             eCcCh
Q psy1695         166 SNSGG  170 (202)
Q Consensus       166 sn~~~  170 (202)
                      +|...
T Consensus       170 ~n~~d  174 (318)
T 3te6_A          170 GGHNV  174 (318)
T ss_dssp             CCSSC
T ss_pred             ecCcc
Confidence            98763

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.32  E-value=1.9e-12  Score=107.35  Aligned_cols=137  Identities=18%  Similarity=0.183  Sum_probs=80.2

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc--CcC-ccchhhhhccccc
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK--DKG-TSRFVHKFNSRIH   96 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~--~~~-~~~~~~~~~~~~~   96 (202)
                      ..+.++|++..++.+...+.......    .|.+++|+||+|||||++|+.+++.+.....  .+. ...++.+++....
T Consensus        18 ~p~~l~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~   93 (384)
T 2qby_B           18 VFKEIPFREDILRDAAIAIRYFVKNE----VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG   93 (384)
T ss_dssp             HCSSCTTCHHHHHHHHHHHHHHHTTC----CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence            34789999999999999988876542    3447999999999999999999998743100  000 1122222221111


Q ss_pred             ---------------CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhH-HHH-HHHhcccCcccccccCCc
Q psy1695          97 ---------------FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGL-LDV-IIPFIDHHAVYNQISFQN  159 (202)
Q Consensus        97 ---------------~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~-~~~-L~~~le~~~~~~~~~~~~  159 (202)
                                     +......+.....+...+...+...+. ||+|||++.+.... ++. +..+++..        .+
T Consensus        94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~--------~~  164 (384)
T 2qby_B           94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD--------AN  164 (384)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS--------SC
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC--------cc
Confidence                           000000000001112333344444433 99999999987542 455 44444432        57


Q ss_pred             eEEEEeeCcC
Q psy1695         160 TIFLFLSNSG  169 (202)
Q Consensus       160 ~~~Iltsn~~  169 (202)
                      ..+|+|||..
T Consensus       165 ~~iI~~t~~~  174 (384)
T 2qby_B          165 ISVIMISNDI  174 (384)
T ss_dssp             EEEEEECSST
T ss_pred             eEEEEEECCC
Confidence            8888888865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.31  E-value=1.5e-11  Score=101.92  Aligned_cols=137  Identities=15%  Similarity=0.210  Sum_probs=85.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCce--EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcc------
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKAL--AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNS------   93 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl--~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------   93 (202)
                      +.++|++..++.+..++.....+.    .+.  +++|+||+|||||++++.+++.+..   .. ...++.+++.      
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~----~~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~-~~~~~~i~~~~~~~~~   88 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWELYKD---KT-TARFVYINGFIYRNFT   88 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHHHTT---SC-CCEEEEEETTTCCSHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCC----CCCCCeEEEECCCCCCHHHHHHHHHHHHhh---hc-CeeEEEEeCccCCCHH
Confidence            569999999999999998876543    233  7899999999999999999998754   20 0111111111      


Q ss_pred             --------cccCCCCchhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          94 --------RIHFPNENHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        94 --------~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                              .+....+.. +.....+...+...+... ...||+|||++.+++..++.|+.+++...-   ....+..+|+
T Consensus        89 ~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~---~~~~~~~iI~  164 (389)
T 1fnn_A           89 AIIGEIARSLNIPFPRR-GLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK---LGAFRIALVI  164 (389)
T ss_dssp             HHHHHHHHHTTCCCCSS-CCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH---HSSCCEEEEE
T ss_pred             HHHHHHHHHhCccCCCC-CCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC---CCcCCEEEEE
Confidence                    010000000 000111223333333333 357999999999999999999999876320   0013778889


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      +||...
T Consensus       165 ~~~~~~  170 (389)
T 1fnn_A          165 VGHNDA  170 (389)
T ss_dssp             EESSTH
T ss_pred             EECCch
Confidence            888753

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.31  E-value=2.6e-13  Score=119.42  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=87.7

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc---CCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR---YHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFV   88 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~---~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~   88 (202)
                      .+..+.+.+...++||+.+++.+..++.......   ...+...+++|+||||||||++|+++|+.+..   ...... .
T Consensus       285 ~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~-~  360 (595)
T 3f9v_A          285 IRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR---AVYTTG-K  360 (595)
T ss_dssp             GGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---EECCCT-T
T ss_pred             HHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC---ceecCC-C
Confidence            4677888899999999998877654443221000   00012236999999999999999999988533   100000 0


Q ss_pred             hhhcccccCCCC-c-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc---c---ccCCce
Q psy1695          89 HKFNSRIHFPNE-N-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN---Q---ISFQNT  160 (202)
Q Consensus        89 ~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~---~---~~~~~~  160 (202)
                      ......+..... . ..+.+.. ..+    .+..+..+|++|||++++++..++.|+++|+++.++.   +   .-..++
T Consensus       361 ~~~~~~l~~~~~~~~~~g~~~~-~~G----~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~  435 (595)
T 3f9v_A          361 GSTAAGLTAAVVREKGTGEYYL-EAG----ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARA  435 (595)
T ss_dssp             CSTTTTSEEECSSGGGTSSCSE-EEC----HHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred             ccccccccceeeeccccccccc-cCC----eeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence            000011100000 0 0000000 001    1112235799999999999999999999999987541   2   123567


Q ss_pred             EEEEeeCcC
Q psy1695         161 IFLFLSNSG  169 (202)
Q Consensus       161 ~~Iltsn~~  169 (202)
                      .+|.|||..
T Consensus       436 ~vIaatNp~  444 (595)
T 3f9v_A          436 AVIAAGNPK  444 (595)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEcCCc
Confidence            899999975

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.30  E-value=8.2e-12  Score=108.24  Aligned_cols=125  Identities=18%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhcc-------C--CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNR-------Y--HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~-------~--~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~   92 (202)
                      ++++|++.+++.+..++..+....       .  ....+.+++|+||||||||++|+++|+.+..        .++.++.
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--------~~i~in~  110 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--------DILEQNA  110 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--------EEEEECT
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--------CEEEEeC
Confidence            369999999999999988754221       0  0012347999999999999999999999632        2222222


Q ss_pred             ccccCCCCchhHHHHHHhHH-----HHHHh--------hhhCCceEEEEecCCCCChhH---HHHHHHhcccCccccccc
Q psy1695          93 SRIHFPNENHVSLYRLQLTN-----WIISN--------VTACDRAIFIFDEVDKFPKGL---LDVIIPFIDHHAVYNQIS  156 (202)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~-----~~~~~--------l~~~~~~viiiDEid~~~~~~---~~~L~~~le~~~~~~~~~  156 (202)
                      +.....   ..  ....+..     .+.+.        .......||||||+|.++...   .+.|.+++++.       
T Consensus       111 s~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------  178 (516)
T 1sxj_A          111 SDVRSK---TL--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------  178 (516)
T ss_dssp             TSCCCH---HH--HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------
T ss_pred             CCcchH---HH--HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------
Confidence            211000   00  0000000     00000        112345899999999997744   47888888873       


Q ss_pred             CCceEEEEeeCc
Q psy1695         157 FQNTIFLFLSNS  168 (202)
Q Consensus       157 ~~~~~~Iltsn~  168 (202)
                        +..+|+++|.
T Consensus       179 --~~~iIli~~~  188 (516)
T 1sxj_A          179 --STPLILICNE  188 (516)
T ss_dssp             --SSCEEEEESC
T ss_pred             --CCCEEEEEcC
Confidence              3445566654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.28  E-value=3.1e-11  Score=90.24  Aligned_cols=127  Identities=14%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHH
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLY  106 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (202)
                      |..+++.+.+.+..+...     .+..++|+||+|+|||+++++++..+...  .+....++  ....+..   .....+
T Consensus        19 ~~~~~~~~~~~~~~~~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~g~~~~~~--~~~~~~~---~~~~~~   86 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPE-----EGKGLTFVGSPGVGKTHLAVATLKAIYEK--KGIRGYFF--DTKDLIF---RLKHLM   86 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGG-----GCCEEEECCSSSSSHHHHHHHHHHHHHHH--SCCCCCEE--EHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHhcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHH--cCCeEEEE--EHHHHHH---HHHHHh
Confidence            455555554444433211     23368999999999999999999997531  22111111  1110000   000000


Q ss_pred             HHHhHHHHHHhhhhCCceEEEEecCC--CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695         107 RLQLTNWIISNVTACDRAIFIFDEVD--KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  173 (202)
Q Consensus       107 ~~~l~~~~~~~l~~~~~~viiiDEid--~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i  173 (202)
                      .......+...+.  ..++++|||++  .+++...+.|.++++...      .++..+|+|||...+.+
T Consensus        87 ~~~~~~~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~------~~~~~ii~tsn~~~~~~  147 (180)
T 3ec2_A           87 DEGKDTKFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRY------NNLKSTIITTNYSLQRE  147 (180)
T ss_dssp             HHTCCSHHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH------HTTCEEEEECCCCSCC-
T ss_pred             cCchHHHHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH------HcCCCEEEEcCCChhHh
Confidence            0000001111222  34799999998  567777888888886531      14578899999987753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.27  E-value=5.1e-12  Score=104.56  Aligned_cols=140  Identities=16%  Similarity=0.140  Sum_probs=79.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-CcCccchhhhhcccc-----
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DKGTSRFVHKFNSRI-----   95 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~-----   95 (202)
                      +.++|++..++.+...+.......    .+.+++|+||+|||||++++.+++.+..... .+....++.+++...     
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~----~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   94 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGE----KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR   94 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSC----CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCC----CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence            579999999999988877654322    3447899999999999999999998743100 000112222221110     


Q ss_pred             ---------cCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCCCCChh--HHHHHHHhcccCccccccc-CCceEE
Q psy1695          96 ---------HFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQIS-FQNTIF  162 (202)
Q Consensus        96 ---------~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~-~~~~~~  162 (202)
                               ....+. .+.....+...+...+.... ..||+|||++.+...  .++.|..+++....   .. ..+..+
T Consensus        95 ~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~---~~~~~~~~~  170 (387)
T 2v1u_A           95 VASAIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE---LGDRVWVSL  170 (387)
T ss_dssp             HHHHHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC---C-----CEE
T ss_pred             HHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh---cCCCceEEE
Confidence                     000000 00001112333444443332 469999999999876  67777776654210   00 257788


Q ss_pred             EEeeCcC
Q psy1695         163 LFLSNSG  169 (202)
Q Consensus       163 Iltsn~~  169 (202)
                      |++||..
T Consensus       171 I~~t~~~  177 (387)
T 2v1u_A          171 VGITNSL  177 (387)
T ss_dssp             EEECSCS
T ss_pred             EEEECCC
Confidence            8888876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.26  E-value=4.9e-11  Score=95.37  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=74.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|.+.+++.+.+.+...+.++.     +-..|.+++|+||||||||++++++|..+..        .++.+....+.
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--------~~i~i~g~~l~   81 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--------NFISVKGPELL   81 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------EEEEEETTTTC
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--------CEEEEEcHHHH
Confidence            3588899999988877643221110     0223446999999999999999999998532        23333332221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh-----------hHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK-----------GLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~-----------~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ..   +.+..... ...+.+........++++||++.+..           ...+.++..|+.+.     .....+++.+
T Consensus        82 ~~---~~~~~~~~-i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----~~~~~i~ia~  152 (274)
T 2x8a_A           82 NM---YVGESERA-VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----ARQQVFIMAA  152 (274)
T ss_dssp             SS---TTHHHHHH-HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----STTCEEEEEE
T ss_pred             hh---hhhHHHHH-HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----ccCCEEEEee
Confidence            11   12211111 22233333233457999999987532           23455555555442     2234555666


Q ss_pred             eCcChHHHHH
Q psy1695         166 SNSGGTEIMN  175 (202)
Q Consensus       166 sn~~~~~i~~  175 (202)
                      +|.. +.+.+
T Consensus       153 tn~p-~~LD~  161 (274)
T 2x8a_A          153 TNRP-DIIDP  161 (274)
T ss_dssp             ESCG-GGSCH
T ss_pred             cCCh-hhCCH
Confidence            6654 44433

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.25  E-value=2.4e-12  Score=105.57  Aligned_cols=48  Identities=10%  Similarity=0.193  Sum_probs=36.4

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcccCccc---ccc---cCCceEEEEeeCcCh
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDHHAVY---NQI---SFQNTIFLFLSNSGG  170 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~~~~~---~~~---~~~~~~~Iltsn~~~  170 (202)
                      .++++|||++++++..++.|+++++++...   .+.   ...+.++|.++|...
T Consensus       145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~  198 (350)
T 1g8p_A          145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE  198 (350)
T ss_dssp             TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS
T ss_pred             CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC
Confidence            579999999999999999999999986421   111   113678889999643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.24  E-value=6e-12  Score=95.70  Aligned_cols=133  Identities=15%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc----cCCC
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI----HFPN   99 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~   99 (202)
                      +++.......+.+.+..++........|.+++|+||+|||||++|+++++.+..   .+.  .++.+....+    ....
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~--~~~~~~~~~~~~~~~~~~  101 (202)
T 2w58_A           27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RNV--SSLIVYVPELFRELKHSL  101 (202)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTC--CEEEEEHHHHHHHHHHC-
T ss_pred             ccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCC--eEEEEEhHHHHHHHHHHh
Confidence            454433333333444444433210112357899999999999999999999765   321  1111111110    0000


Q ss_pred             -CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC--ChhHHHHHH-HhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         100 -ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF--PKGLLDVII-PFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       100 -~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~--~~~~~~~L~-~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                       ....        ..+.+.+..  .++++|||++..  +...+..++ .+++...      ..+..+|+|||...+.+..
T Consensus       102 ~~~~~--------~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~------~~~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          102 QDQTM--------NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRM------FENLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             --CCC--------HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHH------HTTCCEEEEESSCHHHHHH
T ss_pred             ccchH--------HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHH------hCCCCEEEEcCCCHHHHHH
Confidence             0000        111122232  259999999664  333344333 4554321      1456789999999887766


Q ss_pred             HH
Q psy1695         176 TF  177 (202)
Q Consensus       176 ~~  177 (202)
                      .+
T Consensus       166 ~~  167 (202)
T 2w58_A          166 HL  167 (202)
T ss_dssp             HS
T ss_pred             HH
Confidence            53

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.22  E-value=1.8e-11  Score=104.08  Aligned_cols=131  Identities=11%  Similarity=0.083  Sum_probs=72.1

Q ss_pred             HHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCC
Q psy1695          20 LKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPN   99 (202)
Q Consensus        20 L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   99 (202)
                      +++.++|+....  ...++......+.   .+.+++|+||+|+|||++|+++++.+..   ......++.+....+    
T Consensus       104 fd~fv~g~~n~~--a~~~~~~~a~~~~---~~~~lll~Gp~G~GKTtLa~aia~~l~~---~~~~~~v~~v~~~~~----  171 (440)
T 2z4s_A          104 FENFVVGPGNSF--AYHAALEVAKHPG---RYNPLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITSEKF----  171 (440)
T ss_dssp             GGGCCCCTTTHH--HHHHHHHHHHSTT---SSCCEEEECSSSSSHHHHHHHHHHHHHH---HCCSSCEEEEEHHHH----
T ss_pred             hhhcCCCCchHH--HHHHHHHHHhCCC---CCCeEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeHHHH----
Confidence            334455765443  2233444443332   2447899999999999999999999754   100111222211111    


Q ss_pred             CchhHHHHHHhH----HHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         100 ENHVSLYRLQLT----NWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       100 ~~~~~~~~~~l~----~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                         ...+...+.    ..+..... ...+|++|||++.+..  ..++.|+.+++...      ..+..+|++|+.....
T Consensus       172 ---~~~~~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~------~~~~~iIitt~~~~~~  240 (440)
T 2z4s_A          172 ---LNDLVDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELH------DSGKQIVICSDREPQK  240 (440)
T ss_dssp             ---HHHHHHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH------TTTCEEEEEESSCGGG
T ss_pred             ---HHHHHHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHH------HCCCeEEEEECCCHHH
Confidence               000111001    11111111 1457999999999986  67888888876521      0345677788775544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.21  E-value=1.1e-10  Score=100.65  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++++|++.++..+.+.+... ..+.     +...|.+++|+||||||||++|++++..+..        .++.+....+.
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--------~~i~i~g~~~~  101 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------PFITASGSDFV  101 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--------CEEEEEGGGGT
T ss_pred             HHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--------CEEEEehhHHH
Confidence            46999999999998776653 2211     1224557999999999999999999998532        34444443332


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhC---CceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCc
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTAC---DRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQN  159 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~---~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~  159 (202)
                      ...   .+..    ...+...+...   ...+++|||+|.+..              ..++.|+..|+.+.     ....
T Consensus       102 ~~~---~g~~----~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----~~~~  169 (499)
T 2dhr_A          102 EMF---VGVG----AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTA  169 (499)
T ss_dssp             SSC---TTHH----HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----SSCC
T ss_pred             Hhh---hhhH----HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----cCcc
Confidence            211   1211    12233333332   237999999987642              24456666666443     1134


Q ss_pred             eEEEEeeCcC
Q psy1695         160 TIFLFLSNSG  169 (202)
Q Consensus       160 ~~~Iltsn~~  169 (202)
                      .++|.+||..
T Consensus       170 viviAatn~p  179 (499)
T 2dhr_A          170 IVVMAATNRP  179 (499)
T ss_dssp             CEEEECCSCG
T ss_pred             EEEEEecCCh
Confidence            5666666654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.21  E-value=8.3e-11  Score=98.44  Aligned_cols=135  Identities=15%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC-----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF-----   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----   97 (202)
                      .++|+..+++.+.+.+.......      ..++++|++||||+++|++++.....   .  ..+|+.++++.+..     
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~------~~vli~Ge~GtGK~~lAr~ih~~s~r---~--~~~fv~v~~~~~~~~~~~~  206 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAE------CPVLITGESGVGKEVVARLIHKLSDR---S--KEPFVALNVASIPRDIFEA  206 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCC------SCEEEECSTTSSHHHHHHHHHHHSTT---T--TSCEEEEETTTSCHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcCCC------CCeEEecCCCcCHHHHHHHHHHhcCC---C--CCCeEEEecCCCCHHHHHH
Confidence            47888888888888777744322      24699999999999999999887433   1  34566555543211     


Q ss_pred             ----CCCc-hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCc
Q psy1695          98 ----PNEN-HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNS  168 (202)
Q Consensus        98 ----~~~~-~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~  168 (202)
                          ...+ +.+..     ....+.+.....++++||||+.++++.|..|+++|+++.+...    ....++.+|.+||.
T Consensus       207 elfg~~~g~~tga~-----~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~  281 (387)
T 1ny5_A          207 ELFGYEKGAFTGAV-----SSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR  281 (387)
T ss_dssp             HHHCBCTTSSTTCC-----SCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred             HhcCCCCCCCCCcc-----cccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence                0000 00000     0000122334458999999999999999999999999875421    23346789999998


Q ss_pred             ChHHH
Q psy1695         169 GGTEI  173 (202)
Q Consensus       169 ~~~~i  173 (202)
                      ..+.+
T Consensus       282 ~l~~~  286 (387)
T 1ny5_A          282 NIKEL  286 (387)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            76543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.21  E-value=3.1e-11  Score=103.42  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCc-CccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDK-GTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~  100 (202)
                      .++|++..++.+...+.+.        .+.+++|+||||||||++|+++|+.+.... +.. ....++.++++      .
T Consensus       181 ~iiGr~~~i~~l~~~l~r~--------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------~  246 (468)
T 3pxg_A          181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------T  246 (468)
T ss_dssp             CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred             CccCcHHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------c
Confidence            5999999999988777652        222679999999999999999999975510 000 01223333322      1


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                      .+.+.+... ...+.+.+......|+|||    ...++++.|++.|++         .+..+|.+||...
T Consensus       247 ~~~g~~e~~-~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~---------g~v~vI~at~~~e  302 (468)
T 3pxg_A          247 KYRGEFEDR-LKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR---------GELQCIGATTLDE  302 (468)
T ss_dssp             ------CTT-HHHHHHHHHTCCCCEEEEC----C--------CCCTTS---------SSCEEEEECCTTT
T ss_pred             cccchHHHH-HHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC---------CCEEEEecCCHHH
Confidence            111211111 2233344455556799999    556788999999987         4577888888764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.20  E-value=6.4e-12  Score=97.32  Aligned_cols=96  Identities=11%  Similarity=0.028  Sum_probs=58.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecC
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEV  131 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEi  131 (202)
                      .+++|+||+|||||++|+++++.+..   .+.  .+..+....+.....       +. .    ..+  ....+++|||+
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~---~~~--~~~~~~~~~~~~~~~-------~~-~----~~~--~~~~vliiDe~  113 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANE---LER--RSFYIPLGIHASIST-------AL-L----EGL--EQFDLICIDDV  113 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTC--CEEEEEGGGGGGSCG-------GG-G----TTG--GGSSEEEEETG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCC--eEEEEEHHHHHHHHH-------HH-H----Hhc--cCCCEEEEecc
Confidence            37899999999999999999999765   211  112222221111000       00 0    011  12479999999


Q ss_pred             CCCChhH--HHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         132 DKFPKGL--LDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       132 d~~~~~~--~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      +.++...  ++.|+.+++...     +.....+|++||...+
T Consensus       114 ~~~~~~~~~~~~l~~~l~~~~-----~~~~~~ii~~~~~~~~  150 (242)
T 3bos_A          114 DAVAGHPLWEEAIFDLYNRVA-----EQKRGSLIVSASASPM  150 (242)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHH-----HHCSCEEEEEESSCTT
T ss_pred             ccccCCHHHHHHHHHHHHHHH-----HcCCCeEEEEcCCCHH
Confidence            9998765  888888876532     0022247788876553

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.20  E-value=1.2e-11  Score=100.79  Aligned_cols=105  Identities=12%  Similarity=0.056  Sum_probs=59.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  130 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE  130 (202)
                      +.+++|+||||||||++|+++++.+..   .+  ..++.+....+.   ..............+.....  ..++++|||
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~~--~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~vL~iDE  106 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---RG--YRVIYSSADDFA---QAMVEHLKKGTINEFRNMYK--SVDLLLLDD  106 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH---TT--CCEEEEEHHHHH---HHHHHHHHHTCHHHHHHHHH--TCSEEEEEC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH---CC--CEEEEEEHHHHH---HHHHHHHHcCcHHHHHHHhc--CCCEEEEcC
Confidence            346899999999999999999999754   21  122222221110   00000000000111122222  257999999


Q ss_pred             CCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         131 VDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       131 id~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      ++.++.  ..++.++.+++...     + .+..+|++|+....
T Consensus       107 i~~l~~~~~~~~~l~~~l~~~~-----~-~~~~iii~~~~~~~  143 (324)
T 1l8q_A          107 VQFLSGKERTQIEFFHIFNTLY-----L-LEKQIILASDRHPQ  143 (324)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHH-----H-TTCEEEEEESSCGG
T ss_pred             cccccCChHHHHHHHHHHHHHH-----H-CCCeEEEEecCChH
Confidence            999986  67777877776421     0 34467777776554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.18  E-value=1e-11  Score=109.49  Aligned_cols=46  Identities=30%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++||+.+++.+..++...    .      +++|+||+|||||++|++++..+.+
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g----~------~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK----R------HVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT----C------CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ceEECchhhHhhccccccCC----C------EEEEEeCCCCCHHHHHHHHhccCCc
Confidence            46999999998877666532    1      6899999999999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.17  E-value=4.5e-11  Score=109.28  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~  100 (202)
                      .++|++..++.+.+.+.+.        .+.+++|+||||||||++|+.+|+.+.... +... ...++.++++.+... .
T Consensus       171 ~viGr~~~i~~l~~~l~~~--------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-~  241 (854)
T 1qvr_A          171 PVIGRDEEIRRVIQILLRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-A  241 (854)
T ss_dssp             CCCSCHHHHHHHHHHHHCS--------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred             ccCCcHHHHHHHHHHHhcC--------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-C
Confidence            5899999888888776542        222579999999999999999999975410 0000 122333333322110 1


Q ss_pred             chhHHHHHHhHHHHHHhhhhC-CceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         101 NHVSLYRLQLTNWIISNVTAC-DRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~-~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      .+.+.+...+.. +...+... ...|+||||++.+.        .++.+.|.++++.+         +..+|.++|..
T Consensus       242 ~~~g~~~~~l~~-~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---------~i~~I~at~~~  309 (854)
T 1qvr_A          242 KYRGEFEERLKA-VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---------ELRLIGATTLD  309 (854)
T ss_dssp             ----CHHHHHHH-HHHHHHTTCSSEEEEECCC-------------------HHHHHTT---------CCCEEEEECHH
T ss_pred             ccchHHHHHHHH-HHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC---------CeEEEEecCch
Confidence            111212222222 22333333 45799999999987        45677888888774         44566666543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.17  E-value=8e-11  Score=97.95  Aligned_cols=137  Identities=14%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc-
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN-  101 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  101 (202)
                      .++|+..+...+...+........      .++++|++||||+.+|+++++....   .   ..++.++++.+...... 
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a~~~~------~vli~GesGtGKe~lAr~ih~~s~r---~---~~fv~vnc~~~~~~~~~~  197 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIAKSKA------PVLITGESGTGKEIVARLIHRYSGR---K---GAFVDLNCASIPQELAES  197 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHTSCS------CEEEECCTTSSHHHHHHHHHHHHCC---C---SCEEEEESSSSCTTTHHH
T ss_pred             cccccchHHHHHHhhhhhhhccch------hheEEeCCCchHHHHHHHHHHhccc---c---CCcEEEEcccCChHHHHH
Confidence            468888888888777776554322      5889999999999999999987433   2   23666666544211100 


Q ss_pred             -hhH----HHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeCcChHH
Q psy1695         102 -HVS----LYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       102 -~~~----~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn~~~~~  172 (202)
                       .++    .+... ...-.+.+..+..++++|||++.+++..|..|+++|+++.+...    ....++.+|.+||.....
T Consensus       198 ~lfg~~~g~~tga-~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~  276 (368)
T 3dzd_A          198 ELFGHEKGAFTGA-LTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE  276 (368)
T ss_dssp             HHHEECSCSSSSC-CCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH
T ss_pred             HhcCccccccCCc-ccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence             000    00000 00000112334457899999999999999999999999875421    123467799999987654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.17  E-value=7.2e-11  Score=106.58  Aligned_cols=125  Identities=11%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~~~~   96 (202)
                      +.++|++..++.+.+.+.+.        .+.+++|+||||||||++|+++++.+.+   ...     ...++..++..+.
T Consensus       186 d~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~---~~v~~~~~~~~~~~~~~~~l~  254 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIGSLL  254 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHH---TCSCGGGTTCEEEECCCC---
T ss_pred             CCccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHh---CCCChhhcCCEEEEEcHHHHh
Confidence            35899999998887766542        2336899999999999999999999754   211     1112222222221


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC---------ChhHHHHHHHhcccCcccccccCCceEEEEeeC
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF---------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSN  167 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~---------~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn  167 (202)
                      .. ..+.+.+...+ ..+.+.+......|+||||++.+         ..++.+.|.++++++         +..+|.+||
T Consensus       255 ~~-~~~~g~~e~~l-~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~---------~~~~I~at~  323 (758)
T 1r6b_X          255 AG-TKYRGDFEKRF-KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------KIRVIGSTT  323 (758)
T ss_dssp             CC-CCCSSCHHHHH-HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------CCEEEEEEC
T ss_pred             cc-ccccchHHHHH-HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---------CeEEEEEeC
Confidence            11 11222122222 23334444555689999999988         335677777877764         455666665


Q ss_pred             c
Q psy1695         168 S  168 (202)
Q Consensus       168 ~  168 (202)
                      .
T Consensus       324 ~  324 (758)
T 1r6b_X          324 Y  324 (758)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.12  E-value=1.3e-10  Score=94.46  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh-ccccCcCccchhhhh--cccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEE
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF-KRYKDKGTSRFVHKF--NSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIF  128 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viii  128 (202)
                      .+++|+||||||||++|.++++.+. .   .+....++...  ...+......  +.+..     ....+.  ..++|||
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~---~g~~v~~~~~~~l~~~l~~~~~~--~~~~~-----~~~~~~--~~~lLii  220 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEK---KGVSTTLLHFPSFAIDVKNAISN--GSVKE-----EIDAVK--NVPVLIL  220 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHH---SCCCEEEEEHHHHHHHHHCCCC------CC-----TTHHHH--TSSEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEEHHHHHHHHHHHhcc--chHHH-----HHHHhc--CCCEEEE
Confidence            4789999999999999999999987 5   33211111110  1111000000  00000     011122  2369999


Q ss_pred             ecCCCC--ChhHHHHH-HHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         129 DEVDKF--PKGLLDVI-IPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       129 DEid~~--~~~~~~~L-~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      ||++..  ++..++.| ..+++...      ..+..+|+|||...+.+.+.
T Consensus       221 Ddig~~~~~~~~~~~ll~~ll~~r~------~~~~~~IitSN~~~~~l~~~  265 (308)
T 2qgz_A          221 DDIGAEQATSWVRDEVLQVILQYRM------LEELPTFFTSNYSFADLERK  265 (308)
T ss_dssp             ETCCC------CTTTTHHHHHHHHH------HHTCCEEEEESSCHHHHHTT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHH------HCCCcEEEECCCCHHHHHHH
Confidence            999554  33344433 33555421      13567899999998887654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.11  E-value=1.3e-10  Score=104.97  Aligned_cols=117  Identities=14%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~~~~~   97 (202)
                      .++|++..++.+...+.+.        .+.+++|+||||||||++|+++|+.+.+   ...     ...++.+++     
T Consensus       181 ~iiG~~~~i~~l~~~l~~~--------~~~~vLL~G~pGtGKT~la~~la~~l~~---~~~p~~l~~~~~~~~~~-----  244 (758)
T 3pxi_A          181 PVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIIN---NEVPEILRDKRVMTLDM-----  244 (758)
T ss_dssp             CCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHS---SCSCTTTSSCCEECC-------
T ss_pred             CccCchHHHHHHHHHHhCC--------CCCCeEEECCCCCCHHHHHHHHHHHHhc---CCCChhhcCCeEEEecc-----
Confidence            5999999999988877642        2236899999999999999999999755   211     112222222     


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcCh
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGG  170 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~  170 (202)
                       ...+.+.+...+ ..+.+.+......|+|||    ...++++.|++.|++         .+..+|.+||...
T Consensus       245 -g~~~~G~~e~~l-~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~---------~~v~~I~at~~~~  302 (758)
T 3pxi_A          245 -GTKYRGEFEDRL-KKVMDEIRQAGNIILFID----AAIDASNILKPSLAR---------GELQCIGATTLDE  302 (758)
T ss_dssp             ---------CTTH-HHHHHHHHTCCCCEEEEC----C--------CCCTTS---------SSCEEEEECCTTT
T ss_pred             -cccccchHHHHH-HHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhc---------CCEEEEeCCChHH
Confidence             011112122222 233334444556899999    556788899999987         4677888888765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.09  E-value=5.2e-10  Score=87.96  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=38.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhH-----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          22 QHVHGQELAISHICGALKNHF-----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~-----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++++|++.++..+.+....+.     .... ...|.+++|+||||||||+++++++..+
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999888877655421     1111 1234469999999999999999999985

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.08  E-value=1.7e-10  Score=95.22  Aligned_cols=135  Identities=21%  Similarity=0.303  Sum_probs=77.6

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc---------
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN---------   92 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---------   92 (202)
                      +.++|++..++.+...+.......    .+..++|+||+|||||++++.+++.+......+  ..++.+++         
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~----~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~--~~~~~i~~~~~~~~~~~   93 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREE----KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGK--FKHVYINTRQIDTPYRV   93 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTC----CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSS--CEEEEEEHHHHCSHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCC----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC--ceEEEEECCCCCCHHHH
Confidence            579999999999888777654332    344689999999999999999999864310001  01111111         


Q ss_pred             -----ccccCCCCchhHHHHHHhHHHHHHhhhhCC-ceEEEEecCCCCC----hhHHHHHHHhcccCcccccccCCceEE
Q psy1695          93 -----SRIHFPNENHVSLYRLQLTNWIISNVTACD-RAIFIFDEVDKFP----KGLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        93 -----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~viiiDEid~~~----~~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                           ..+....+. .+.....+...+...+.... ..||+|||++.+.    ...+..|+..++..      ...+..+
T Consensus        94 ~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------~~~~~~~  166 (386)
T 2qby_A           94 LADLLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------NKSKISF  166 (386)
T ss_dssp             HHHHTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------CC--EEE
T ss_pred             HHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------CCCeEEE
Confidence                 111000000 00001122333444444433 5799999998875    45667777766532      1157788


Q ss_pred             EEeeCcC
Q psy1695         163 LFLSNSG  169 (202)
Q Consensus       163 Iltsn~~  169 (202)
                      |++||..
T Consensus       167 I~~~~~~  173 (386)
T 2qby_A          167 IGITNDV  173 (386)
T ss_dssp             EEEESCG
T ss_pred             EEEECCC
Confidence            8888754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.04  E-value=1.2e-09  Score=89.60  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      .++||+.+++.+..++........   .+.+++|+||||+|||+++++++..+..   .     +.....     +....
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~~~~---~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~-----~~~~sg-----~~~~~   89 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKMRGE---VLDHVLLAGPPGLGKTTLAHIIASELQT---N-----IHVTSG-----PVLVK   89 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHTC---CCCCEEEESSTTSSHHHHHHHHHHHHTC---C-----EEEEET-----TTCCS
T ss_pred             HccCcHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCcHHHHHHHHHHHhCC---C-----EEEEec-----hHhcC
Confidence            588999999988887776432211   3346899999999999999999999743   1     000000     00000


Q ss_pred             hHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         103 VSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       103 ~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      ..    .+.. +...  .....|+++||++.+.+.+++.|+..++..
T Consensus        90 ~~----~l~~-~~~~--~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~  129 (334)
T 1in4_A           90 QG----DMAA-ILTS--LERGDVLFIDEIHRLNKAVEELLYSAIEDF  129 (334)
T ss_dssp             HH----HHHH-HHHH--CCTTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred             HH----HHHH-HHHH--ccCCCEEEEcchhhcCHHHHHHHHHHHHhc
Confidence            11    1111 1111  124579999999999998888888877654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.03  E-value=1.4e-09  Score=86.71  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhH-----hccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          22 QHVHGQELAISHICGALKNHF-----QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~-----~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++++|++.+++.+.+....+.     .... ...|.+++|+||+|||||+++++++..+
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence            469999999888877665431     1111 1234469999999999999999999985

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.00  E-value=1.7e-10  Score=84.05  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++|+||+|+|||+++++++..+..   .+..  .+.+....+...         .        .+.  ..++++|||++
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~--~~~~~~~~~~~~---------~--------~~~--~~~lLilDE~~   93 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQALE---AGKN--AAYIDAASMPLT---------D--------AAF--EAEYLAVDQVE   93 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHHHT---TTCC--EEEEETTTSCCC---------G--------GGG--GCSEEEEESTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh---cCCc--EEEEcHHHhhHH---------H--------HHh--CCCEEEEeCcc
Confidence            5889999999999999999998754   3211  111111111000         0        011  24799999999


Q ss_pred             CCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHH
Q psy1695         133 KFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEI  173 (202)
Q Consensus       133 ~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i  173 (202)
                      .+....++.|+++++...     +...+.+|+|||..++.+
T Consensus        94 ~~~~~~~~~l~~li~~~~-----~~g~~~iiits~~~p~~l  129 (149)
T 2kjq_A           94 KLGNEEQALLFSIFNRFR-----NSGKGFLLLGSEYTPQQL  129 (149)
T ss_dssp             CCCSHHHHHHHHHHHHHH-----HHTCCEEEEEESSCTTTS
T ss_pred             ccChHHHHHHHHHHHHHH-----HcCCcEEEEECCCCHHHc
Confidence            998877888888877532     001234788999876544

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.96  E-value=5.9e-10  Score=84.95  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             HHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          35 CGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        35 ~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...++.++...+   +..+++|+||||||||++|.++++.+..
T Consensus        45 ~~~l~~~~~~iP---kkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           45 LGALKSFLKGTP---KKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             HHHHHHHHHTCT---TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCC---cccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            344455444321   2236999999999999999999999744

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.87  E-value=2.2e-09  Score=91.17  Aligned_cols=142  Identities=14%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHH-HHHhhccc-cCcCccchhhh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFI-VSSIFKRY-KDKGTSRFVHK   90 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~l-a~~l~~~~-~~~~~~~~~~~   90 (202)
                      ++.+.+.+.. ++||+.++..+.-++......   .+...++|+.|+||| ||.+|+++ ++.+.+.. ..+..+....+
T Consensus       205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gL  279 (506)
T 3f8t_A          205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVGK---NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDL  279 (506)
T ss_dssp             HHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHH
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCc
Confidence            5677888889 999999877776555432100   001226999999999 99999999 77642200 00000000001


Q ss_pred             hcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-c-cCCceEEEEeeCc
Q psy1695          91 FNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-I-SFQNTIFLFLSNS  168 (202)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-~-~~~~~~~Iltsn~  168 (202)
                      ..+ ...+ .+ .. .+   .    +.+..+..+++++||++++++..+..|++.|+++.++.. . --.+..+|.++|.
T Consensus       280 t~s-~r~~-tG-~~-~~---~----G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP  348 (506)
T 3f8t_A          280 TAV-LKED-RG-WA-LR---A----GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP  348 (506)
T ss_dssp             SEE-EEES-SS-EE-EE---E----CHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred             eEE-EEcC-CC-cc-cC---C----CeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence            101 1011 11 00 00   1    112233458999999999999999999999999875422 1 1235678888887


Q ss_pred             Ch
Q psy1695         169 GG  170 (202)
Q Consensus       169 ~~  170 (202)
                      ..
T Consensus       349 ~~  350 (506)
T 3f8t_A          349 GE  350 (506)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.78  E-value=1.5e-08  Score=84.51  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             hhCCChHHHHHHHHHHH-HHhHhccCCCCCceEEEE--ecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGAL-KNHFQNRYHNTKALAISL--HGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l-~~~~~~~~~~~~pl~~ll--~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++|++..++.+...+ .....+..  ..+..+++  +||+|+|||++++.+++.+..
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            57999999999999888 76554310  13446788  999999999999999988643

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.76  E-value=3.6e-08  Score=78.12  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=61.1

Q ss_pred             HHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHH
Q psy1695          33 HICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTN  112 (202)
Q Consensus        33 ~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  112 (202)
                      .+..++..++....  .+..+++|+||||||||++|.++|+.+.-   .|   . +  +.+.     ...          
T Consensus        88 ~~~~~l~~~l~~~~--~~~n~~~l~GppgtGKt~~a~ala~~~~l---~G---~-v--n~~~-----~~f----------  141 (267)
T 1u0j_A           88 YAASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTVPF---YG---C-V--NWTN-----ENF----------  141 (267)
T ss_dssp             HHHHHHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHHSSC---EE---E-C--CTTC-----SSC----------
T ss_pred             HHHHHHHHHHhCCC--CCCcEEEEECCCCCCHHHHHHHHHhhhcc---cc---e-e--eccc-----ccc----------
Confidence            34455666665431  12347999999999999999999997321   11   0 0  0110     000          


Q ss_pred             HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc-c-----cccCCceEEEEeeCc
Q psy1695         113 WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY-N-----QISFQNTIFLFLSNS  168 (202)
Q Consensus       113 ~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~-~-----~~~~~~~~~Iltsn~  168 (202)
                          .+.......|+++|-..+..++++.+..+++-..+. +     ......+.+|+|||.
T Consensus       142 ----~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~  199 (267)
T 1u0j_A          142 ----PFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT  199 (267)
T ss_dssp             ----TTGGGSSCSEEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred             ----ccccccccEEEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence                011122233445555556667777888888744322 1     124578889999998

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.52  E-value=3.3e-07  Score=75.03  Aligned_cols=98  Identities=7%  Similarity=-0.037  Sum_probs=66.5

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEec
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDE  130 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDE  130 (202)
                      +.+++|+||+|+||++.+..+++.+.+   .+.. ++..+   .+..  ...+.    .+.......-..+++.|++|||
T Consensus        18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~---~~~~-~~~~~---~~~~--~~~~~----~l~~~~~~~plf~~~kvvii~~   84 (343)
T 1jr3_D           18 RAAYLLLGNDPLLLQESQDAVRQVAAA---QGFE-EHHTF---SIDP--NTDWN----AIFSLCQAMSLFASRQTLLLLL   84 (343)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHHH---HTCC-EEEEE---ECCT--TCCHH----HHHHHHHHHHHCCSCEEEEEEC
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHHh---CCCC-eeEEE---EecC--CCCHH----HHHHHhcCcCCccCCeEEEEEC
Confidence            337999999999999999999998765   2211 11001   1111  11111    1222222222235678999999


Q ss_pred             CCC-CChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695         131 VDK-FPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       131 id~-~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      ++. ++.+.++.|++.+++++       .+++||++++.
T Consensus        85 ~~~kl~~~~~~aLl~~le~p~-------~~~~~il~~~~  116 (343)
T 1jr3_D           85 PENGPNAAINEQLLTLTGLLH-------DDLLLIVRGNK  116 (343)
T ss_dssp             CSSCCCTTHHHHHHHHHTTCB-------TTEEEEEEESC
T ss_pred             CCCCCChHHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            999 99999999999999977       78888888864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.44  E-value=1e-06  Score=71.54  Aligned_cols=43  Identities=16%  Similarity=0.205  Sum_probs=36.3

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..++|++..++.+.+++...    .      .++++||+|+|||++++.+++.
T Consensus        12 ~~~~gR~~el~~L~~~l~~~----~------~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY----P------LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC----S------EEEEECCTTSSHHHHHHHHHHH
T ss_pred             HhcCChHHHHHHHHHHHhcC----C------eEEEECCCcCCHHHHHHHHHHH
Confidence            46899999998888777641    2      7899999999999999999886

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.44  E-value=1.1e-06  Score=71.44  Aligned_cols=72  Identities=7%  Similarity=0.080  Sum_probs=39.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVD  132 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid  132 (202)
                      .++++||||+|||++|..++.. ..   .  ...|+...............    +.....+.+.+...+  ++|||+++
T Consensus       125 viLI~GpPGsGKTtLAlqlA~~-~G---~--~VlyIs~~~eE~v~~~~~~l----e~~l~~i~~~l~~~~--LLVIDsI~  192 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGEA-LG---G--KDKYATVRFGEPLSGYNTDF----NVFVDDIARAMLQHR--VIVIDSLK  192 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHHH-HH---T--TSCCEEEEBSCSSTTCBCCH----HHHHHHHHHHHHHCS--EEEEECCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh-CC---C--CEEEEEecchhhhhhhhcCH----HHHHHHHHHHHhhCC--EEEEeccc
Confidence            4789999999999999999886 21   1  11222220011000001111    112333444555544  99999998


Q ss_pred             CCCh
Q psy1695         133 KFPK  136 (202)
Q Consensus       133 ~~~~  136 (202)
                      .+..
T Consensus       193 aL~~  196 (331)
T 2vhj_A          193 NVIG  196 (331)
T ss_dssp             TTC-
T ss_pred             cccc
Confidence            8754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.42  E-value=2.6e-07  Score=69.93  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=65.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-----------cccc---------cCCCCchh-HH---HHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-----------NSRI---------HFPNENHV-SL---YRL  108 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-----------~~~~---------~~~~~~~~-~~---~~~  108 (202)
                      .+++++++|.|||++|-.+|-....   .|...-++.+.           ...+         .+...... ..   ...
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~  106 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM  106 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence            3788889999999999999988766   44322222110           0111         01111100 00   001


Q ss_pred             HhHHHHHHhhhhCCceEEEEecC------CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         109 QLTNWIISNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       109 ~l~~~~~~~l~~~~~~viiiDEi------d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                      .......+.+....+++||+||+      +.++   .+.+++++.+.+       .+..+|+|+|..++.+.+.
T Consensus       107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---~~ev~~~l~~Rp-------~~~~vIlTGr~ap~~l~e~  170 (196)
T 1g5t_A          107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP---LEEVISALNARP-------GHQTVIITGRGCHRDILDL  170 (196)
T ss_dssp             HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---HHHHHHHHHTSC-------TTCEEEEECSSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC---HHHHHHHHHhCc-------CCCEEEEECCCCcHHHHHh
Confidence            11223444555567899999999      3444   345667777655       7889999999998876553

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.41  E-value=1.1e-06  Score=71.53  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..++|.+..++.+.. +..     .      .++++||+|+|||++++.+++.+
T Consensus        13 ~~~~gR~~el~~L~~-l~~-----~------~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA-----P------ITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS-----S------EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH-hcC-----C------cEEEECCCCCCHHHHHHHHHHhc
Confidence            468999888777765 432     2      78999999999999999999875

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.39  E-value=8.1e-07  Score=88.89  Aligned_cols=102  Identities=12%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-------------
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-------------  119 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------------  119 (202)
                      +++|+||||||||.+|+.+......       ..+..++.+     ......    .+.+.+...+.             
T Consensus      1269 ~vLL~GPpGtGKT~la~~~l~~~~~-------~~~~~infs-----a~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A         1269 GIILCGPPGSGKTMIMNNALRNSSL-------YDVVGINFS-----KDTTTE----HILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCSS-------CEEEEEECC-----TTCCHH----HHHHHHHHHBCCEEETTTEEEEEB
T ss_pred             eEEEECCCCCCHHHHHHHHHhcCCC-------CceEEEEee-----cCCCHH----HHHHHHHHHhhhccccCCccccCC
Confidence            7899999999999999665544211       112222221     111111    11222222211             


Q ss_pred             -hCCceEEEEecCCCCChh------HHHHHHHhcccCccccc-----ccCCceEEEEeeCcCh
Q psy1695         120 -ACDRAIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSGG  170 (202)
Q Consensus       120 -~~~~~viiiDEid~~~~~------~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~~  170 (202)
                       .....|+||||++....+      ..+.|.+++|.+...+.     ....+..+|.++|..+
T Consensus      1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A         1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp             SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred             CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence             111258999998765443      78899999988654432     2446788999998864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.29  E-value=1.8e-06  Score=66.80  Aligned_cols=93  Identities=16%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh---------hhcccccCCCCc-hhHHHHHHhHHHHHHhhhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH---------KFNSRIHFPNEN-HVSLYRLQLTNWIISNVTA  120 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~  120 (202)
                      ....+++||+|+|||+++..++..+..   .+...-++.         ...+.+....+. .+. ....+...+.+.+..
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~-~~~~i~~~i~~~~~~   87 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE-SAPEILNYIMSNSFN   87 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES-STHHHHHHHHSTTSC
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccC-CHHHHHHHHHHHhhC
Confidence            345889999999999999888887654   221111110         001111111111 011 001122233333333


Q ss_pred             CCceEEEEecCCCCChhHHHHHHHhcc
Q psy1695         121 CDRAIFIFDEVDKFPKGLLDVIIPFID  147 (202)
Q Consensus       121 ~~~~viiiDEid~~~~~~~~~L~~~le  147 (202)
                      .+.++|+|||++.++.+..+.+..+.+
T Consensus        88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~  114 (223)
T 2b8t_A           88 DETKVIGIDEVQFFDDRICEVANILAE  114 (223)
T ss_dssp             TTCCEEEECSGGGSCTHHHHHHHHHHH
T ss_pred             CCCCEEEEecCccCcHHHHHHHHHHHh
Confidence            456899999999998887776655444

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=98.26  E-value=3.2e-06  Score=72.01  Aligned_cols=43  Identities=30%  Similarity=0.586  Sum_probs=33.6

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..|++.+...+..    +    .+ .+++.|++|||||+++..++..+..
T Consensus        29 ~Q~~av~~~~~~i~~----~----~~-~~li~G~aGTGKT~ll~~~~~~l~~   71 (459)
T 3upu_A           29 GQKNAFNIVMKAIKE----K----KH-HVTINGPAGTGATTLTKFIIEALIS   71 (459)
T ss_dssp             HHHHHHHHHHHHHHS----S----SC-EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc----C----CC-EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            577777777655543    1    22 6899999999999999999999866

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.15  E-value=2.3e-06  Score=64.12  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=22.9

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +.++|+|||++.++++..+.|..+.+.
T Consensus        76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~  102 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPSLFEVVKDLLDR  102 (184)
T ss_dssp             TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence            468999999999988888888877765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.11  E-value=1.4e-05  Score=59.54  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|.||+|+||||+++.++..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            468999999999999999998863

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.02  E-value=0.00019  Score=60.69  Aligned_cols=49  Identities=22%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          29 LAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.+.+.+...+....     ....|..++++||+|+||||++..+|..+..
T Consensus        70 ~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           70 WFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             HHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            344555555554443211     0124667999999999999999999998765

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.99  E-value=6.1e-06  Score=62.65  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+...+++|+||+|||+.|..++...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~   29 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAND   29 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35578999999999999998875553

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.98  E-value=1.3e-05  Score=78.51  Aligned_cols=28  Identities=14%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++-.++|+||||||||++|.+++.....
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~ 1453 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR 1453 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3446999999999999999999888654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.94  E-value=2.8e-05  Score=59.30  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||++++.++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~~~   49 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKGLR   49 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999976543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.93  E-value=2.9e-05  Score=67.96  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh------hcccccCCCCchhHHHHHHhHHHHHHh----h----
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK------FNSRIHFPNENHVSLYRLQLTNWIISN----V----  118 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~----l----  118 (202)
                      .+++.||||||||+++..++..+..   .+...-+...      .+..........+        ..+.+.    +    
T Consensus       206 ~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Ti--------h~ll~~~~~~~~~~~  274 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTGRTASTV--------HRLLGYGPQGFRHNH  274 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTSCEEEH--------HHHTTEETTEESCSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhcccHHHH--------HHHHcCCcchhhhhh
Confidence            6889999999999999999988654   2210000000      0000000000000        000000    0    


Q ss_pred             -hhCCceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         119 -TACDRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       119 -~~~~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                       ...+.++||+||+..++...+..|++.+..+
T Consensus       275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~  306 (574)
T 3e1s_A          275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG  306 (574)
T ss_dssp             SSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred             cccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence             1113589999999999999999888877654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.92  E-value=0.00042  Score=58.62  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++++|++|+||||++..+|..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999998766

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.90  E-value=2.1e-05  Score=62.99  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ...|..++|.||||+||||+++.+++.+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467789999999999999999999875

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.85  E-value=1.2e-05  Score=81.34  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             eEEEEecCCCCChh------HHHHHHHhcccCccccc-----ccCCceEEEEeeCcC
Q psy1695         124 AIFIFDEVDKFPKG------LLDVIIPFIDHHAVYNQ-----ISFQNTIFLFLSNSG  169 (202)
Q Consensus       124 ~viiiDEid~~~~~------~~~~L~~~le~~~~~~~-----~~~~~~~~Iltsn~~  169 (202)
                      -|+++||++...++      ....|.+++|.+...+.     ....+..||.+.|..
T Consensus      1376 ~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A         1376 LVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp             EEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred             EEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence            58889999877654      88999999998765432     345677888888864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.81  E-value=0.00092  Score=54.44  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|-.+.|.||+|+||||+++.|+..+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4667999999999999999999998765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.80  E-value=0.00015  Score=52.60  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|.||||+|||++|+.+ +.
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHH-HH
Confidence            5789999999999999999 55

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.78  E-value=0.00015  Score=56.30  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=20.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+++||+|+|||.+|..++..+
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            37899999999999998888764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.75  E-value=1.8e-05  Score=58.17  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |..++++|+||+|||++++.|++.+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34689999999999999999999853

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.73  E-value=0.0002  Score=58.95  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||+++..++..+..
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5889999999999999999988654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.73  E-value=0.0001  Score=60.67  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||+++..++..+..
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~   87 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQA   87 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999877543

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.72  E-value=4.2e-05  Score=57.63  Aligned_cols=89  Identities=12%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh---------h-cccccCCCCc-hhHHHHHHhHHHHHHhhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK---------F-NSRIHFPNEN-HVSLYRLQLTNWIISNVT  119 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~-~~~~~~~~~~-~~~~~~~~l~~~~~~~l~  119 (202)
                      ....+++||.|+|||+.+..++..+..   .+...-++..         . .+.+....+. .+.   .  ...+.+.+.
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~---~--~~~i~~~~~   79 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---N--SREILKYFE   79 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTTSCEEECEEES---S--STHHHHHCC
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeC---C--HHHHHHHHh
Confidence            446889999999999998888877644   2211111100         0 0011000000 000   0  011222222


Q ss_pred             hCCceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         120 ACDRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       120 ~~~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                       .++++|+|||++.++++..+.+..+.+.
T Consensus        80 -~~~dvViIDEaqfl~~~~v~~l~~l~~~  107 (191)
T 1xx6_A           80 -EDTEVIAIDEVQFFDDEIVEIVNKIAES  107 (191)
T ss_dssp             -TTCSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred             -ccCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence             2468999999999988877776665443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.72  E-value=0.00019  Score=56.65  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+||||+.++++..+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhCCC
Confidence            5889999999999999999998654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.72  E-value=2.7e-05  Score=57.83  Aligned_cols=26  Identities=23%  Similarity=0.448  Sum_probs=23.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|..++|.|+||+||||+++.+++.+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            56679999999999999999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.72  E-value=0.00012  Score=60.44  Aligned_cols=87  Identities=11%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCc-C----ccchhhhh----cccccCCCCchhHHHHHHhHHHHHHhhhhCCc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDK-G----TSRFVHKF----NSRIHFPNENHVSLYRLQLTNWIISNVTACDR  123 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~-~----~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  123 (202)
                      .+++.||+|+||||+.++++..+....... .    ..++....    ....... ..... +    ...+..++... .
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~-~~~~~-~----~~~La~aL~~~-P  197 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVH-RDTLG-F----SEALRSALRED-P  197 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBT-TTBSC-H----HHHHHHHTTSC-C
T ss_pred             EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeec-cccCC-H----HHHHHHHhhhC-c
Confidence            589999999999999999999875510000 0    00000000    0000000 00011 1    23444555544 4


Q ss_pred             eEEEEecCCCCChhHHHHHHHhccc
Q psy1695         124 AIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       124 ~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +++++||+-  +.+..+.+++..+.
T Consensus       198 dvillDEp~--d~e~~~~~~~~~~~  220 (356)
T 3jvv_A          198 DIILVGEMR--DLETIRLALTAAET  220 (356)
T ss_dssp             SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred             CEEecCCCC--CHHHHHHHHHHHhc
Confidence            799999996  46677777776655

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.70  E-value=0.0012  Score=51.81  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..++|.|+||+|||++|+.+++.+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            355689999999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.70  E-value=0.00012  Score=55.29  Aligned_cols=21  Identities=14%  Similarity=-0.007  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .++++||+|+|||+++..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.68  E-value=0.00014  Score=55.88  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||||+|||+++..++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~   49 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLK   49 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999888776543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.68  E-value=5.7e-05  Score=59.10  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ...|..++|.|+||+|||++|+.|++.+.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34677799999999999999999999863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.67  E-value=3.3e-05  Score=58.07  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.3

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..|..++|.|+||+|||++|+.|++.+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            466679999999999999999999985

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.66  E-value=0.00017  Score=59.41  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||++|..++..+..
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~   89 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQR   89 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999887644

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.66  E-value=7.2e-05  Score=57.74  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+++.|++|||||+++..+|..+..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~   32 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLR   32 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            46899999999999999999999766

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.65  E-value=8.5e-05  Score=57.83  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|.||||+||||+|+.|++.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            67789999999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.65  E-value=3.3e-05  Score=56.68  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      |..++|.|+||+||||+|+.+++
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            44689999999999999999998

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.64  E-value=3.5e-05  Score=57.03  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..++|+||+|+|||++|+.+|+.+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688999999999999999999863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.63  E-value=0.00038  Score=56.18  Aligned_cols=27  Identities=22%  Similarity=0.122  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .|..+++.||+|+|||++|..+|+.+.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            455688999999999999999999853

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.63  E-value=0.00032  Score=58.01  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||++|..++..+..
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~  100 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQK  100 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHH
Confidence            5888999999999999999887543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.60  E-value=4.5e-05  Score=56.57  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=22.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|.|+||+||||+|+.+++.+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35578999999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.60  E-value=4.3e-05  Score=58.31  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|.|+||+||||+|+.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.60  E-value=4.3e-05  Score=56.56  Aligned_cols=26  Identities=15%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +..++|.|++|+||||+++.|++.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.60  E-value=2.7e-05  Score=57.41  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=19.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +|..++|.|++|+||||+|+.|++.+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            556789999999999999999998853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.58  E-value=4e-05  Score=55.76  Aligned_cols=23  Identities=22%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.||+|+||||+++.|++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.58  E-value=5e-05  Score=56.14  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++..++|.|++|+||||+++.|++.+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45568999999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.56  E-value=5.6e-05  Score=56.86  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.||+|+|||++++.|++.+.
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999999863

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.55  E-value=5.4e-05  Score=56.33  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++..++|.|++|+||||+++.|++.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999999985

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.55  E-value=0.00057  Score=57.40  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|..++++|+||+||||+|+.+++.+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            45578999999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.54  E-value=5.4e-05  Score=56.95  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..++|.|++|+||||+|+.|++.+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34468999999999999999999985

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.54  E-value=5.1e-05  Score=55.44  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|+||+|+||||+++.++..+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.53  E-value=5.6e-05  Score=55.74  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..++|+|++|+|||++++.+++.+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            3358899999999999999999885

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.53  E-value=7.4e-05  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=23.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..+.|.||+|+||||+++.++..+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455789999999999999999999875

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.52  E-value=0.00053  Score=60.43  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.|+||||||+++..+...+.
T Consensus       166 ~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          166 ISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHH
Confidence            589999999999999988887765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.52  E-value=7.1e-05  Score=56.30  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +..++|.|++|+||||+++.|++.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            456899999999999999999998644

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.52  E-value=0.00021  Score=57.25  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          30 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++.+.+.+..+....  .++|..+.+.||+|+||||+++.|+..+..
T Consensus        12 ~~~~l~~~i~~~~~~~--~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           12 TIEFLDKYIPEWFETG--NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             HHHHHHHHHHHHHTTT--CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3444545554432211  346777999999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.50  E-value=0.00022  Score=57.94  Aligned_cols=29  Identities=14%  Similarity=0.195  Sum_probs=25.8

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|..+.+.||+|+||||+++.|+..+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45788899999999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.50  E-value=8.4e-05  Score=57.08  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+|..+++.||||+||+|.|+.|++.+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            466678899999999999999999985

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.49  E-value=7.9e-05  Score=55.95  Aligned_cols=27  Identities=26%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++..++|.|++|+|||++++.|++.+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356678999999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.49  E-value=6.1e-05  Score=57.56  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +|..++|.||+|+||||+++.|++.+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            455689999999999999999999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.49  E-value=8.3e-05  Score=55.21  Aligned_cols=25  Identities=36%  Similarity=0.705  Sum_probs=22.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++..++|+|++|+|||++++.+++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3446899999999999999999998

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.48  E-value=7e-05  Score=54.99  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.||||+|||++|+.||+.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.47  E-value=8.6e-05  Score=57.26  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..++|.|++|+||||+|+.|++.+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            455789999999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.46  E-value=8.1e-05  Score=56.18  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|.|++|+||||+++.|++.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4667999999999999999999998643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.46  E-value=6.6e-05  Score=57.58  Aligned_cols=26  Identities=31%  Similarity=0.545  Sum_probs=22.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|.|++|+|||++++.|++.+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45578999999999999999999885

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.46  E-value=0.0001  Score=54.49  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=23.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .|..++|.|++|+|||++|+.+++.+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999999875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.46  E-value=6.8e-05  Score=55.49  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.|+||+||||+++.|++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.46  E-value=0.00045  Score=55.86  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=22.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +..+++.||+|+|||++|..+|+.+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            33678999999999999999999853

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.46  E-value=0.00017  Score=69.93  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||||||||.+|.+++.+-.
T Consensus      1084 ~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A         1084 IVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHhh
Confidence            499999999999999999998743

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.45  E-value=8.9e-05  Score=55.90  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|.|++|+||||+++.|++.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4667999999999999999999998643

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.43  E-value=8.6e-05  Score=55.34  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |..++|.|++|+|||++|+.|++.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33689999999999999999999853

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.43  E-value=7.6e-05  Score=56.31  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..++|.||+|+|||++++.|++.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            44568999999999999999999985

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.43  E-value=0.0024  Score=64.58  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  103 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
                      ++=-++|++.+.+..+- +..+.     -++||+|+.|+||+++++..|.....        .+..+..+     ..-..
T Consensus      1588 LVlF~dai~Hi~RI~Ri-l~~p~-----G~~LLvGvgGsGkqSltrLaa~i~~~--------~~fqi~~~-----~~Y~~ 1648 (2695)
T 4akg_A         1588 MVIHESMVDHILRIDRA-LKQVQ-----GHMMLIGASRTGKTILTRFVAWLNGL--------KIVQPKIH-----RHSNL 1648 (2695)
T ss_dssp             CCCCHHHHHHHHHHHHH-HHSSS-----EEEEEECTTTSCHHHHHHHHHHHTTC--------EEECCCCC-----TTCCH
T ss_pred             eeeHHHHHHHHHHHHHH-HcCCC-----CCEEEECCCCCcHHHHHHHHHHHhCC--------eeEEEEee-----CCCCH
Confidence            45557788888654443 33322     16999999999999999987766211        12222211     11113


Q ss_pred             HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      ..++++++..+..+-......+++|+|.+-..+..+..+..+|..|.+
T Consensus      1649 ~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEV 1696 (2695)
T 4akg_A         1649 SDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADI 1696 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCC
Confidence            346666666665554455668899999999999998888888888764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.42  E-value=0.00025  Score=58.28  Aligned_cols=47  Identities=19%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+..++.+...+...+...    ....++|.||+|+|||+++++++..+.
T Consensus         3 ~~~~L~~~il~~l~~~i~~g----~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            3 DTHKLADDVLQLLDNRIEDN----YRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTTTC----SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccC----CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            34455566656555544322    223588999999999999999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.42  E-value=0.00011  Score=55.31  Aligned_cols=25  Identities=16%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..+.|.||+|+||||+++.|+..+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4468899999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.40  E-value=0.0009  Score=54.49  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+||||+.++++..+.+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            5889999999999999999988644

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.40  E-value=0.0001  Score=54.69  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+-.+.+.||+|+||||+++.|+..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3446899999999999999999886

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.39  E-value=8.6e-05  Score=56.63  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.++|.|+||+||||+|+.|++.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568999999999999999999986

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.39  E-value=0.00031  Score=52.89  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..+.+.|++|+|||++++.++..+..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5667899999999999999999998643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.39  E-value=0.0082  Score=51.63  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhHhccCC-----CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          30 AISHICGALKNHFQNRYH-----NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~~-----~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++.+.+.+...+.....     ..+|..++|+|++|+||||++..||..+..
T Consensus        75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W           75 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            444455555554432110     134557899999999999999999988754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.39  E-value=9e-05  Score=54.75  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|+|+||+|||++|+.|++.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999853

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.39  E-value=0.00015  Score=53.07  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..+.|.||+|+|||++++.++..+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.39  E-value=0.00011  Score=55.14  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..+.|.|++|+||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45578999999999999999999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.39  E-value=0.0046  Score=52.19  Aligned_cols=28  Identities=32%  Similarity=0.383  Sum_probs=24.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++++|++|+|||+++..+|..+..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4557899999999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.38  E-value=0.00016  Score=53.52  Aligned_cols=28  Identities=32%  Similarity=0.596  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..++|.|++|+|||++++.++..+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4556899999999999999999999754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.37  E-value=0.0018  Score=49.73  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=16.2

Q ss_pred             EEEEecCCCCcHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la   72 (202)
                      .+++.||+|+|||++...+.
T Consensus        78 ~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           78 VVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHhHHHHH
Confidence            68999999999998665443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.37  E-value=0.00012  Score=55.52  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..+.|.||+|+|||++++.|+..+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34468899999999999999999885

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.36  E-value=0.00012  Score=53.36  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.|++|+|||++|+.|++.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999853

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.36  E-value=0.00013  Score=53.05  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.|++|+|||++++.||+.+.
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999863

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.35  E-value=0.00015  Score=54.85  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..+.+.||+|+||||+++.|+..+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4456889999999999999999998763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.35  E-value=0.00061  Score=56.41  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+||||+.++++..+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcCc
Confidence            5899999999999999999998654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.35  E-value=0.0004  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+++.||+|+|||+++..||+.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            444689999999999999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.34  E-value=0.00014  Score=56.45  Aligned_cols=26  Identities=35%  Similarity=0.509  Sum_probs=22.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..+.|.||+|+||||+++.|++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45578999999999999999999775

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=0.00016  Score=53.56  Aligned_cols=23  Identities=17%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+||||+++.|+..+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.34  E-value=0.00014  Score=56.47  Aligned_cols=26  Identities=27%  Similarity=0.501  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..+.+.||+|+|||++++.|++.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56679999999999999999999875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.34  E-value=0.00058  Score=54.94  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|-.+.|.||+|+||||+++.+|..+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3446899999999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.34  E-value=0.00012  Score=55.45  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36889999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.33  E-value=0.00012  Score=57.31  Aligned_cols=24  Identities=17%  Similarity=0.016  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||+|+|||++|+.||+.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            478999999999999999999853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.33  E-value=0.00011  Score=55.65  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|+||||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36889999999999999999874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.31  E-value=0.00033  Score=56.82  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||||+|||+++..++...
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHhHHHHHHHHHH
Confidence            58999999999999999999874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.31  E-value=0.0091  Score=47.79  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |..+++.|++|+|||+++..+|..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            556888999999999999999988754

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.31  E-value=0.00024  Score=54.36  Aligned_cols=27  Identities=15%  Similarity=-0.156  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ....+++||.|+|||+.+..++.....
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~   54 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQF   54 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            345778999999999998888777544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.31  E-value=0.00018  Score=54.82  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.2

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..+.|.||+|+||||+++.+++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.30  E-value=0.0002  Score=52.74  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|+|++|+|||++++.++..+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4556889999999999999999998743

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.29  E-value=0.00016  Score=55.00  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||||+||+|.|+.|++.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999985

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.29  E-value=0.00015  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|.|++|+||||+++.|++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            478999999999999999999853

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.29  E-value=0.00015  Score=54.32  Aligned_cols=25  Identities=36%  Similarity=0.433  Sum_probs=22.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..+.|.||+|+||||+++.|+..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4468899999999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.28  E-value=0.00018  Score=53.69  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=23.4

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++|..+.++|++|+|||++++.|++.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            36777999999999999999999986

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.27  E-value=0.00017  Score=52.24  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|.|++|+|||++|+.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.27  E-value=0.00019  Score=55.95  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=24.2

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++|..+.+.|++|+|||++|+.|++.+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3666799999999999999999999754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.25  E-value=0.00058  Score=67.09  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||||||++|..++.....
T Consensus      1083 ~vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A         1083 IVEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6999999999999999999987654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.24  E-value=0.00086  Score=55.28  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|-.+.|.||+|+||||+++.|+..+.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            4556899999999999999999998765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.22  E-value=0.0054  Score=52.17  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=24.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++++|.||+|||++++.+++.+..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5667999999999999999999998753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.21  E-value=0.00026  Score=52.97  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      -.+.|.||+|+||||+++.++..+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999999874

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.21  E-value=0.0037  Score=51.22  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.++|+||+|||+++..++..+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4557899999999999999999988654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.20  E-value=0.0077  Score=50.83  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++++|++|+|||+++..||..+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~  126 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE  126 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4667889999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.20  E-value=0.00022  Score=52.78  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|.|++|+||||+++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.19  E-value=0.00056  Score=54.88  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=24.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++-.++|+||+|+||||++..+|..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3447899999999999999999998753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.19  E-value=0.00031  Score=53.19  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=23.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..++|.|++|+|||++++.+++.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455688999999999999999999876

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.18  E-value=0.0012  Score=49.74  Aligned_cols=25  Identities=12%  Similarity=-0.025  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHH-HHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKN-YVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT-~la~~la~~l~~   77 (202)
                      ..+++||.|+||| +|.+++.++...
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~   47 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIA   47 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            4789999999999 899999888654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.17  E-value=0.0013  Score=54.93  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+++.||+|+|||++|..||+.+.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCC
Confidence            578999999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.17  E-value=0.00024  Score=54.41  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.|++|+||||+++.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.17  E-value=0.0014  Score=54.77  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.|+||||+|||+++..++-.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHH
Confidence            5889999999999999977644

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.16  E-value=0.0013  Score=53.31  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++++||+|+|||+++..+|..+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4557899999999999999999998765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.16  E-value=0.00023  Score=54.04  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.|+||+||||+|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999975

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.14  E-value=0.00024  Score=52.66  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.|.||+|+||||+++.++..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            4789999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.14  E-value=0.00042  Score=54.29  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |...+++.+.-.+...+.+.       .+.|.|++|+|||++++.+++.+.
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~-------~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGR-------SMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTC-------CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcchhhhhhhhhhhhhcCCC-------EEEEECCCCCCHHHHHHHHHHhcC
Confidence            33445555544444433221       589999999999999999999753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.14  E-value=0.00032  Score=52.90  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..+.+.||+|+||||+++.|+..+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445688999999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.14  E-value=0.0054  Score=46.04  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..+++.|++|+|||++...+....+
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            344699999999999999999987643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.13  E-value=0.0016  Score=63.28  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||++|..++..+..
T Consensus       734 lVlI~G~PG~GKTtLal~lA~~aa~  758 (1706)
T 3cmw_A          734 IVEIYGPESSGKTTLTLQVIAAAQR  758 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCcHHHHHHHHHHHHH
Confidence            5899999999999999999988654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.12  E-value=0.00034  Score=56.81  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +..++++||+|+|||++|..||+.+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34689999999999999999999863

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.11  E-value=0.00098  Score=53.87  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=24.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..+.+.||+|+||||+++.|+..+.+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            5557889999999999999999998754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.07  E-value=0.00043  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +|..+.|.|++|+|||++++.|++
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999999999988

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.07  E-value=0.00036  Score=55.62  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      |..++|.|+||+||||+|+.+++.
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999986

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.06  E-value=0.00059  Score=60.45  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.||||||||+++-.+...+..
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~  231 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVK  231 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999876665555443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.05  E-value=0.00033  Score=52.63  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+.|.||+|+||||+++.++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.04  E-value=0.00051  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..+.|.||+|+|||++++.|++..
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3358899999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.03  E-value=0.0013  Score=52.94  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+..+.+.||+|+||||+++.|+..+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            556789999999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.03  E-value=0.00058  Score=52.65  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+.|.||+|+||||+++.+++.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            455689999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.02  E-value=0.0026  Score=54.50  Aligned_cols=49  Identities=10%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          29 LAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...+.+.+.+...+....     ....+-.++|.||+|+||||+++.|+..+..
T Consensus       266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            344555555555443211     0134557899999999999999999998755

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.01  E-value=0.00034  Score=52.68  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..+.++|++|+|||++++.|++.+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            44568899999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.01  E-value=0.00048  Score=54.78  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+|..+.++|++|+||||+|+.|++
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566799999999999999999995

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.00  E-value=0.001  Score=55.17  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..++++||+|+|||+++++++..+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34468999999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.00  E-value=0.00041  Score=52.15  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+||||+++.+...+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.00  E-value=0.002  Score=51.90  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|-.++++||+|+||||++..+|..+..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            4556899999999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.99  E-value=0.00053  Score=53.55  Aligned_cols=24  Identities=25%  Similarity=0.464  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+.+.||+|+||||+++.|++.+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            368899999999999999999764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.98  E-value=0.00046  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++|.||+|+|||++++.|.+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5899999999999999987763

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.96  E-value=0.00061  Score=59.36  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=35.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      ..++|.+..++.+...+...-      ..+..+.++||+|+|||++|..+++
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLK------GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTST------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CeecccHHHHHHHHHHHhccc------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            358999988888877765321      1233688999999999999998864

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=96.95  E-value=0.0016  Score=56.89  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++++|+|+|||.++-.++..+..
T Consensus       200 ~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          200 RSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCChHHHHHHHHHHHHh
Confidence            4688899999999999888877654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.95  E-value=0.00043  Score=51.86  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+.++|++|+||||+++.|+.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            478999999999999999998

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.93  E-value=0.00073  Score=52.40  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..+.+.||+|+||||+++.|+..+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34468899999999999999999975

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.93  E-value=0.0025  Score=51.68  Aligned_cols=24  Identities=25%  Similarity=0.135  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||||+|||+++..++....
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            479999999999999988777654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.90  E-value=0.00067  Score=50.76  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.+.|++|+|||++++.+++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            67899999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.89  E-value=0.00025  Score=53.41  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.|++|+||||+++.|++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999998753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.87  E-value=0.0008  Score=56.90  Aligned_cols=26  Identities=12%  Similarity=0.101  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      .+++|+||+..+++..+..++..+..
T Consensus       235 ~d~liiDE~sm~~~~~l~~l~~~~~~  260 (446)
T 3vkw_A          235 FKRLFIDEGLMLHTGCVNFLVEMSLC  260 (446)
T ss_dssp             CSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred             CCEEEEeCcccCCHHHHHHHHHhCCC
Confidence            68999999999999988888777654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.87  E-value=0.0017  Score=55.92  Aligned_cols=63  Identities=10%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             cCCCchHHHHHHHHhhC-----CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695           8 IQSSNVRVLEEQLKQHV-----HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus         8 ~~~~~~~~l~~~L~~~l-----iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.-..+++.|....     +-..++.+.+    ++.....  .+++..++|.|.+|+||||+|++||+.|.
T Consensus       353 ~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vL----r~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          353 TLNISGTELRRRLRVGGEIPEWFSYPEVVKIL----RESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHH----HHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHhCCCCCCccccChhhHHHH----HHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            34555666766666432     2233343333    3322110  12456799999999999999999999975

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.85  E-value=0.00064  Score=51.50  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      |..+.+.|++|+|||++++.+++.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4568999999999999999999975

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.84  E-value=0.0029  Score=48.83  Aligned_cols=26  Identities=15%  Similarity=-0.124  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...+++||.|+|||+.+...+.....
T Consensus        20 ~l~v~~G~MgsGKTT~lL~~~~r~~~   45 (234)
T 2orv_A           20 QIQVILGPMFSGKSTELMRRVRRFQI   45 (234)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            35788999999999777666655443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.83  E-value=0.0006  Score=51.56  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..++|.||+|+|||++|..+++...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3689999999999999999998743

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.82  E-value=0.0011  Score=48.61  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=16.2

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~   69 (202)
                      .+.+.||+|+||||+++
T Consensus        11 i~~l~G~nGsGKSTl~~   27 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAK   27 (171)
T ss_dssp             EEEEECCTTSCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            58899999999999999

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.80  E-value=0.00046  Score=55.22  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=20.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+.+.||+|+||||+|+.+++.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455789999999999999999999764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.80  E-value=0.001  Score=51.27  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+..+.|.|++|+|||++++.+++.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45578999999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.80  E-value=0.00085  Score=51.81  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=23.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |..+.|.|++|+||||+++.|++.+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            55689999999999999999999863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.78  E-value=0.00093  Score=50.38  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+||||+++.|+..+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999886

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.77  E-value=0.00093  Score=54.62  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=22.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+++.||+|+|||++|..||+.+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3688999999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.77  E-value=0.0008  Score=51.36  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+||||+++.|+..+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.76  E-value=0.0011  Score=53.35  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=23.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |-.+.+.||+|+||||+++.++..+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            446889999999999999999998765

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.76  E-value=0.012  Score=43.75  Aligned_cols=18  Identities=22%  Similarity=0.277  Sum_probs=15.0

Q ss_pred             EEEEecCCCCcHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDF   70 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~   70 (202)
                      .+++.+|+|+|||..+-.
T Consensus        40 ~~li~~~TGsGKT~~~~~   57 (207)
T 2gxq_A           40 DLIGQARTGTGKTLAFAL   57 (207)
T ss_dssp             CEEEECCTTSCHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHH
Confidence            478999999999987544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.75  E-value=0.0011  Score=48.74  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.|++|+|||+++..++..+..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHh
Confidence            6889999999999999999998755

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.75  E-value=0.0012  Score=47.88  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||.|+|||++.+.++..+ +
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l-~   58 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI-G   58 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT-T
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC-C
Confidence            58899999999999999999997 5

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.75  E-value=0.0011  Score=57.34  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .|..++++|.||+|||++|+.|++.+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456789999999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.72  E-value=0.0011  Score=50.74  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+||||+.+.++..+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            588999999999999999998753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.72  E-value=0.0025  Score=55.24  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=35.0

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +|.+..++.+.+.+...-     ...+..+.++|+.|+|||++|+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            699999999988885431     11234688999999999999999996

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=96.71  E-value=0.0074  Score=47.53  Aligned_cols=23  Identities=9%  Similarity=0.183  Sum_probs=19.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++.+|+|+|||.++.+++....
T Consensus       131 ~ll~~~tGsGKT~~~~~~~~~~~  153 (282)
T 1rif_A          131 RILNLPTSAGRSLIQALLARYYL  153 (282)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEcCCCCCcHHHHHHHHHHHH
Confidence            46799999999999987777643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.67  E-value=0.00071  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=15.0

Q ss_pred             EEEEecCCCCcHHHHHHHHH-HHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIV-SSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la-~~l   75 (202)
                      .+.|.||+|+||||+++.|+ ..+
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            58899999999999999999 664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.66  E-value=0.00088  Score=50.82  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+|||++++.++..+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999998643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.65  E-value=0.0012  Score=49.33  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+||||+.+.++..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            368999999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.65  E-value=0.0016  Score=49.73  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+|||++++.+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3456889999999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.64  E-value=0.0012  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.++|++|+||||+++.+++.+
T Consensus        14 iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            48899999999999999999984

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.63  E-value=0.0018  Score=49.49  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +..+|+|||++-++++..+.+..+.+.
T Consensus       101 ~~dvV~IDEaQFf~~~~v~~l~~la~~  127 (219)
T 3e2i_A          101 NVDVIGIDEVQFFDDEIVSIVEKLSAD  127 (219)
T ss_dssp             TCSEEEECCGGGSCTHHHHHHHHHHHT
T ss_pred             CCCEEEEechhcCCHHHHHHHHHHHHC
Confidence            568999999999999888888887754

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.63  E-value=0.013  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.+|+|+|||..+...+...
T Consensus        46 ~~l~~~~TGsGKT~~~~~~~~~~   68 (367)
T 1hv8_A           46 NIVAQARTGSGKTASFAIPLIEL   68 (367)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHHHHHHH
Confidence            67899999999999876655443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.59  E-value=0.0019  Score=49.66  Aligned_cols=28  Identities=18%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+|||++++.+++.+..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5667899999999999999999998743

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.59  E-value=0.0013  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.|+||+|+|||++++.++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.56  E-value=0.0028  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|+||+|+|||++++.|+..+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            58899999999999999999986

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.55  E-value=0.00062  Score=53.34  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++..+.|.|++|+||||+++.|++.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            56678999999999999999999886

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.54  E-value=0.014  Score=59.76  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             CCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchh
Q psy1695          24 VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHV  103 (202)
Q Consensus        24 liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (202)
                      ++=-++|++.+.+..+ .+..+.    + +.||+|..|+||++++|..|.. ..     .  .+..+..+.     .-..
T Consensus      1625 LVlF~daleHv~RI~R-IL~qp~----G-haLLVGvgGSGkqSLtrLAa~i-~~-----~--~vfqi~i~k-----~Y~~ 1685 (3245)
T 3vkg_A         1625 LVLFNEVLDHILRIDR-VFRQPQ----G-HALLIGVSGGGKSVLSRFVAWM-NG-----L--SIYTIKVNN-----NYKS 1685 (3245)
T ss_dssp             CCCCHHHHHHHHHHHH-HHTSTT----C-CEEEEESTTSSHHHHHHHHHHH-TT-----C--EEECCC---------CCH
T ss_pred             EEeHHHHHHHHHHHHH-HHccCC----C-CeEEecCCCCcHHHHHHHHHHH-hC-----C--eeEEEeeeC-----CCCH
Confidence            3445778888865444 333322    1 5899999999999999877665 22     1  122221110     1112


Q ss_pred             HHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcc
Q psy1695         104 SLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAV  151 (202)
Q Consensus       104 ~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~  151 (202)
                      ..++++++..+..+-......+++|+|.+-..+..+..+..+|..|.+
T Consensus      1686 ~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEV 1733 (3245)
T 3vkg_A         1686 SDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEV 1733 (3245)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCc
Confidence            346666666655554445568899999998888888888888887764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.53  E-value=0.0014  Score=50.55  Aligned_cols=28  Identities=18%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+||||+++.+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4556899999999999999999998754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.50  E-value=0.0021  Score=56.23  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=25.5

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|..++|.|++|+|||++|+.|++.+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            35667999999999999999999999763

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.49  E-value=0.014  Score=43.37  Aligned_cols=18  Identities=28%  Similarity=0.178  Sum_probs=14.9

Q ss_pred             EEEEecCCCCcHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDF   70 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~   70 (202)
                      .+++.+|+|+|||..+..
T Consensus        42 ~~lv~apTGsGKT~~~~~   59 (206)
T 1vec_A           42 DILARAKNGTGKSGAYLI   59 (206)
T ss_dssp             CEEEECCSSSTTHHHHHH
T ss_pred             CEEEECCCCCchHHHHHH
Confidence            478999999999976543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.48  E-value=0.0022  Score=56.55  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|..++|+|.+|+||||+|+.|++.+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~   78 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC   78 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5667999999999999999999999743

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.47  E-value=0.002  Score=49.96  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=24.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+|||++++.+++.+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4556899999999999999999999755

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.46  E-value=0.0042  Score=46.79  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+++.|++|+|||+++..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999999988753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.45  E-value=0.002  Score=47.62  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.|++|+|||++|..+.+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            47999999999999999998875

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=96.45  E-value=0.0072  Score=50.80  Aligned_cols=20  Identities=30%  Similarity=0.326  Sum_probs=16.3

Q ss_pred             EEEEecCCCCcHHHHH-HHHH
Q psy1695          53 AISLHGLPGTGKNYVT-DFIV   72 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la-~~la   72 (202)
                      .+++.||+|+|||..+ ..+.
T Consensus         4 ~~lv~a~TGsGKT~~~l~~~l   24 (431)
T 2v6i_A            4 LTVLDLHPGAGKTRRVLPQLV   24 (431)
T ss_dssp             EEEEECCTTSCTTTTHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999986 4444

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.44  E-value=0.0023  Score=48.92  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+|||+.++.+++.+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4556899999999999999999999753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.42  E-value=0.016  Score=47.22  Aligned_cols=28  Identities=29%  Similarity=0.552  Sum_probs=23.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..+.+.||||+|||++.+.++..+.+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            3446889999999999999999987654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.41  E-value=0.0024  Score=47.09  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.|++|+|||++++.+...+..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhccc
Confidence            5889999999999999999988654

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=96.40  E-value=0.022  Score=48.55  Aligned_cols=24  Identities=8%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+++||+|+|||..+..++....
T Consensus       130 ~~ll~~~tGsGKT~~~~~~~~~~~  153 (510)
T 2oca_A          130 RRILNLPTSAGRSLIQALLARYYL  153 (510)
T ss_dssp             EEEEECCSTTTHHHHHHHHHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHH
Confidence            479999999999999977776644

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=96.39  E-value=0.026  Score=53.29  Aligned_cols=25  Identities=24%  Similarity=0.053  Sum_probs=19.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +|...+++||+|+|||.++...+-.
T Consensus       623 ~p~d~ll~~~TGsGKT~val~aa~~  647 (1151)
T 2eyq_A          623 LAMDRLVCGDVGFGKTEVAMRAAFL  647 (1151)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             CcCcEEEECCCCCCHHHHHHHHHHH
Confidence            5567899999999999988655543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.39  E-value=0.0021  Score=47.09  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+|+||+|+|||++.++|.-.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5789999999999999999988765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.39  E-value=0.0042  Score=52.09  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.|.||+|+||||+.++|+....
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            688999999999999999988543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.38  E-value=0.0047  Score=52.57  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++|+||+|+|||+++..++....
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhhhh
Confidence            478999999999999999887753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0044  Score=45.47  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.-+++.|++|+|||++...+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3446899999999999999998775

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.32  E-value=0.017  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+|||++++.++..+..
T Consensus       283 i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          283 IILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999987654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.30  E-value=0.0025  Score=50.28  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||+|+|||+++..++..+.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999997654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.30  E-value=0.003  Score=48.18  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.-+.|.|++|+||||.++.+++.+..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.29  E-value=0.002  Score=49.89  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5789999999999999999887544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.29  E-value=0.0015  Score=48.04  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++|++|+||||+++.|+..+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4789999999999999999999765

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.28  E-value=0.027  Score=50.90  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=16.7

Q ss_pred             EEEEecCCCCcHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la   72 (202)
                      .+++.||+|+|||++...+.
T Consensus       111 ~vii~gpTGSGKTtllp~ll  130 (773)
T 2xau_A          111 IMVFVGETGSGKTTQIPQFV  130 (773)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68999999999999665553

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.27  E-value=0.0028  Score=48.92  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -+-|.||||+|||+.|+.|++.+.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999853

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.27  E-value=0.015  Score=49.80  Aligned_cols=25  Identities=8%  Similarity=-0.164  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|+||+|||+++..+|..+..
T Consensus       244 l~li~G~pG~GKT~lal~~a~~~a~  268 (503)
T 1q57_A          244 VIMVTSGSGMVMSTFVRQQALQWGT  268 (503)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEeecCCCCchHHHHHHHHHHHH
Confidence            5899999999999999999988654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.27  E-value=0.0087  Score=45.18  Aligned_cols=27  Identities=19%  Similarity=0.440  Sum_probs=22.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +..+++.|++|+|||+++..++...+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            346888899999999999999988654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.27  E-value=0.0019  Score=49.52  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~p   56 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDAP   56 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.27  E-value=0.0024  Score=49.63  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999987644

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.27  E-value=0.0024  Score=50.72  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||||+|||++++.++..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.25  E-value=0.0034  Score=44.73  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..+-+++.|++|+|||++...+...-
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence            45568999999999999999987753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.22  E-value=0.0022  Score=55.86  Aligned_cols=28  Identities=18%  Similarity=0.510  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++..+.|.|++|+||||++++|+..+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            3446899999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.20  E-value=0.0019  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++.. .+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl-~p   47 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ-AL   47 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC-CC
Confidence            5788999999999999999987 54

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.20  E-value=0.0029  Score=52.02  Aligned_cols=25  Identities=12%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+++.|+..+.+
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4889999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.20  E-value=0.0032  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999988644

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.18  E-value=0.0053  Score=54.17  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.||||||||+++..+...+..
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~  221 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLAR  221 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999998888777653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.17  E-value=0.0022  Score=49.62  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMDK   57 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=96.16  E-value=0.023  Score=46.13  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=16.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+++.+|+|+|||..+-..+-
T Consensus        46 ~~lv~a~TGsGKT~~~~~~~~   66 (395)
T 3pey_A           46 NMIAQSQSGTGKTAAFSLTML   66 (395)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999987654443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.14  E-value=0.01  Score=49.90  Aligned_cols=28  Identities=21%  Similarity=0.131  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++++|++|+|||+++..+|..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3556888999999999999999999765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.13  E-value=0.0027  Score=49.94  Aligned_cols=25  Identities=28%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.11  E-value=0.0045  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++-+++.|++|+|||++...+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999888765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.11  E-value=0.0044  Score=44.49  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            445899999999999999988654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.10  E-value=0.004  Score=53.71  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.||+|+||||+.++++..+.+
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            5899999999999999999887644

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.10  E-value=0.0026  Score=48.50  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~p   61 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLKP   61 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999887543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.09  E-value=0.0035  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.+.||+|+||||+.+.++..
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.08  E-value=0.0034  Score=46.46  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .-+.+.|++|+|||++.+.++...+
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            3589999999999999999988644

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.05  E-value=0.0038  Score=46.34  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .-+.+.|++|+|||++.+.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            358899999999999999998763

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.05  E-value=0.0043  Score=46.76  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.|++|+|||++++.||+.|.-
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            6889999999999999999999643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.05  E-value=0.0028  Score=50.27  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            5789999999999999999887543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.05  E-value=0.0034  Score=49.46  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.+.||+|+||||+.+.++..+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999863

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.05  E-value=0.003  Score=49.46  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999887543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.05  E-value=0.0038  Score=52.44  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+||||+.++++..+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4889999999999999999998755

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.04  E-value=0.003  Score=51.99  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||+|+||||+.+.|+-.+.+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCCC
Confidence            5789999999999999999987544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.02  E-value=0.0029  Score=49.85  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.02  E-value=0.03  Score=51.65  Aligned_cols=22  Identities=14%  Similarity=-0.111  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||.|+|||++.+.++-.
T Consensus       664 i~~ItGpNGsGKSTlLr~ial~  685 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQTGVI  685 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.02  E-value=0.0032  Score=48.78  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~p   58 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999887543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.01  E-value=0.0029  Score=49.26  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.01  E-value=0.0033  Score=49.52  Aligned_cols=25  Identities=16%  Similarity=0.096  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            5789999999999999999887543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.01  E-value=0.0027  Score=48.66  Aligned_cols=25  Identities=16%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++..+.|.|++|+||||+++.|+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4556889999999999999999876

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.00  E-value=0.0057  Score=44.59  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446899999999999999999764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.00  E-value=0.0057  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+||||+.++++..+.+
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5889999999999999999987544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.00  E-value=0.0054  Score=57.47  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=35.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|.+..++.+.+.+...-      ..+..+.++|+.|+|||+||..+++.
T Consensus       125 ~~vgR~~~~~~l~~~l~~~~------~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKLN------GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTTT------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             eeccHHHHHHHHHHHHhhcc------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            48999998888887775321      13336889999999999999888765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.99  E-value=0.0043  Score=48.14  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5889999999999999999887543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.98  E-value=0.0032  Score=48.43  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELEP   60 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            5789999999999999999887543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.97  E-value=0.0055  Score=44.17  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.-+++.|++|+|||++...+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3446999999999999999988765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.97  E-value=0.007  Score=46.84  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=24.1

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++..+++.|.+|+|||+++..++..+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3555689999999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.96  E-value=0.0033  Score=49.08  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~p   52 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTSG   52 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.96  E-value=0.0052  Score=43.42  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .-+++.|++|+|||++...+...-
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999997653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.96  E-value=0.0052  Score=44.12  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+.+.|++|+|||++.+.+...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.95  E-value=0.0049  Score=44.81  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++-+++.|++|+|||++...+...-
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence            34568999999999999999997653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.95  E-value=0.0039  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||+|+||||+.+.|+-.+.+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCCC
Confidence            5789999999999999999987544

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.95  E-value=0.0037  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~p   67 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIKP   67 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.94  E-value=0.0039  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999987543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.94  E-value=0.0048  Score=47.22  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.|+||+|||++|..++..
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5899999999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.94  E-value=0.0049  Score=43.57  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+++.|++|+|||++...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.93  E-value=0.0067  Score=43.68  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++-+++.|++|+|||++...+...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4456999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.93  E-value=0.0067  Score=42.95  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.93  E-value=0.0052  Score=43.86  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-+++.|++|+|||++...+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3446899999999999999998765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.92  E-value=0.0041  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCCC
Confidence            5789999999999999999987544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.92  E-value=0.0037  Score=45.80  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      -+++.|++|+|||++.+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.91  E-value=0.0035  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999887643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.91  E-value=0.0035  Score=49.57  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+..+.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.91  E-value=0.0041  Score=51.20  Aligned_cols=25  Identities=20%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCCC
Confidence            5789999999999999999987543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.90  E-value=0.0056  Score=43.60  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++-+++.|++|+|||++...+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            345899999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.90  E-value=0.0068  Score=43.26  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4556999999999999999998654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.88  E-value=0.0043  Score=51.32  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            5789999999999999999987543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.88  E-value=0.004  Score=49.06  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~p   59 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIEP   59 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999887543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.87  E-value=0.031  Score=51.47  Aligned_cols=22  Identities=14%  Similarity=0.099  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||.|+|||++.+.++..
T Consensus       675 i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          675 VMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHHHHHHHHHH
Confidence            5889999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.86  E-value=0.0072  Score=43.51  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999998754

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.86  E-value=0.0073  Score=46.33  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...+.+.|++|+|||++|+.||+.+.-
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~   40 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence            457899999999999999999998643

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=95.86  E-value=0.0088  Score=54.30  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.||||||||+++..++..+..
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l~~  397 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHLAR  397 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999998888777654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.85  E-value=0.0048  Score=48.43  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+||||+.+.|+..+.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCC
Confidence            588999999999999999988753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.85  E-value=0.0064  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999988754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.85  E-value=0.0042  Score=48.55  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~p   57 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHRP   57 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999887543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.84  E-value=0.0045  Score=51.21  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEEP   55 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCCC
Confidence            5789999999999999999987543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.84  E-value=0.044  Score=51.06  Aligned_cols=22  Identities=14%  Similarity=0.043  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~   73 (202)
                      -.++++||.|+|||++.+.++-
T Consensus       790 ~i~~ItGpNgsGKSTlLr~iGl  811 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQAGL  811 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            3588999999999999999943

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.83  E-value=0.0064  Score=44.30  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-+++.|++|+|||++...+...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.83  E-value=0.0069  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .-+++.|++|+|||++...+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.83  E-value=0.0086  Score=43.84  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=21.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-+++.|++|+|||++...+...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4556999999999999999998775

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.83  E-value=0.0036  Score=51.34  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCCC
Confidence            5789999999999999999987543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.82  E-value=0.0062  Score=52.94  Aligned_cols=28  Identities=21%  Similarity=0.522  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..++|+|++|+|||++|+.|++.+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            4557899999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.81  E-value=0.007  Score=43.56  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3446999999999999999998776

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.78  E-value=0.0059  Score=43.41  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999988765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.77  E-value=0.0044  Score=48.78  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+ +
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~-p   55 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL-P   55 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS-C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-C
Confidence            57899999999999999999876 5

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.76  E-value=0.0057  Score=44.01  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.75  E-value=0.007  Score=44.20  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.-+++.|++|+|||++...+...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            4556999999999999999888644

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.75  E-value=0.0068  Score=49.62  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.++||+|+|||++++.++..+
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999875

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=95.75  E-value=0.026  Score=47.54  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..++.+|+|+|||..+..++..+
T Consensus       110 ~~ll~~~TGsGKT~~~l~~i~~~  132 (472)
T 2fwr_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (472)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            47899999999999997777764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.74  E-value=0.0065  Score=43.27  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+-+++.|++|+|||++.+.+...-
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3458999999999999999987653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.73  E-value=0.0099  Score=42.48  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||.|+|||++..++.-.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4789999999999999999887755

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.73  E-value=0.083  Score=43.13  Aligned_cols=22  Identities=23%  Similarity=0.111  Sum_probs=16.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.+|+|+|||..+...+-.
T Consensus        60 ~~li~a~TGsGKT~~~~~~~~~   81 (400)
T 1s2m_A           60 DILARAKNGTGKTAAFVIPTLE   81 (400)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHHHH
Confidence            4789999999999876554433

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.71  E-value=0.0069  Score=43.93  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+.+.|++|+|||++...+...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999999764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.71  E-value=0.0073  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +.|.|+.|+||||.++.|++.|.
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.71  E-value=0.0073  Score=44.06  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ...-+++.|++|+|||++...+...-
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34458999999999999999988753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.68  E-value=0.0092  Score=48.68  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||||+|||+++..++...
T Consensus       124 i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          124 ITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998873

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.68  E-value=0.0051  Score=44.58  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la   72 (202)
                      ++.-+++.|++|+|||++...+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            55679999999999999998875

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.071  Score=50.12  Aligned_cols=22  Identities=14%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.||+|+|||..+...+..
T Consensus       201 dvLV~ApTGSGKTlva~l~i~~  222 (1108)
T 3l9o_A          201 SVLVSAHTSAGKTVVAEYAIAQ  222 (1108)
T ss_dssp             CEEEECCSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHH
Confidence            5799999999999987554443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.67  E-value=0.0093  Score=47.65  Aligned_cols=28  Identities=21%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+-.+.++|++|+|||+++..+|..+..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3446888899999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.66  E-value=0.0054  Score=51.08  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+||||+.++|+..+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999999764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.66  E-value=0.0085  Score=44.57  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446899999999999999988754

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.63  E-value=0.0081  Score=45.06  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=21.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.|.|+.|+||||.++.|++.|..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~   26 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEK   26 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            568899999999999999999865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.63  E-value=0.0085  Score=43.94  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+-+++.|++|+|||++...+...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            445999999999999999988765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.62  E-value=0.0083  Score=43.26  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-+++.|++|+|||++...+...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3446999999999999999998765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.60  E-value=0.0037  Score=51.36  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.|+-.+.+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~p   57 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999987543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.60  E-value=0.0077  Score=42.80  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.60  E-value=0.0073  Score=43.07  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=18.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      -+++.|++|+|||++...+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998853

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.58  E-value=0.034  Score=45.44  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=22.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ...+.|.|+||+|||++...+...+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999998653

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=95.58  E-value=0.14  Score=47.62  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=17.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.+|+|+|||.++......
T Consensus        56 ~vlv~apTGsGKTlv~~~~i~~   77 (997)
T 4a4z_A           56 SVFVAAHTSAGKTVVAEYAIAM   77 (997)
T ss_dssp             EEEEECCTTSCSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHH
Confidence            6899999999999865544443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.58  E-value=0.0076  Score=43.28  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .-+++.|++|+|||++...+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.57  E-value=0.0064  Score=43.23  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      -+++.|++|+|||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999988853

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.56  E-value=0.023  Score=44.46  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++.+++.|++|+|||++...+...
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4556999999999999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.56  E-value=0.0079  Score=43.96  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .-+++.|++|+|||+++..+...-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458999999999999999998653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.56  E-value=0.0083  Score=42.55  Aligned_cols=22  Identities=23%  Similarity=0.221  Sum_probs=19.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|++|+|||++...+...-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999987653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.56  E-value=0.0087  Score=43.17  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            345999999999999999988765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.55  E-value=0.017  Score=47.01  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=23.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++..+.+.|++|+|||+++..++..+.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            445688999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.55  E-value=0.0082  Score=43.21  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=20.0

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999888543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.54  E-value=0.011  Score=43.57  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +..-+++.|++|+|||++...+...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999998765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.54  E-value=0.011  Score=43.59  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            345999999999999999988765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.53  E-value=0.0093  Score=47.97  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||||+|||++|..++...
T Consensus       100 i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A          100 VTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.53  E-value=0.012  Score=42.67  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+-+++.|++|+|||++...+....
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3458999999999999999988653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.53  E-value=0.0074  Score=44.77  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++++|++|+|||++|..++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            588999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.52  E-value=0.01  Score=42.64  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.2

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ..-+++.|++|+|||++...+...-
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3459999999999999999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.52  E-value=0.011  Score=43.33  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++-+++.|++|+|||++...+...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3446999999999999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.52  E-value=0.0093  Score=45.69  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-++|.|++|+|||++..++...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            3456999999999999999988764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.51  E-value=0.009  Score=43.78  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446899999999999999988654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.51  E-value=0.011  Score=42.82  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45999999999999999998765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.50  E-value=0.011  Score=43.81  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ...-+++.|++|+|||++...+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3446999999999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.50  E-value=0.011  Score=42.72  Aligned_cols=25  Identities=16%  Similarity=0.069  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +..-+++.|++|+|||++...+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999888764

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.013  Score=53.12  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..++.||||||||+++..+...+.
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l~  400 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHLS  400 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999998877766553

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.48  E-value=0.011  Score=43.74  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4456999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.48  E-value=0.013  Score=42.99  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+-+++.|++|+|||++...+...-
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3459999999999999998877653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.47  E-value=0.0059  Score=48.76  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~p   90 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELEP   90 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            5789999999999999999887543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.46  E-value=0.011  Score=42.77  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+-+++.|++|+|||++...+...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999988764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.45  E-value=0.016  Score=46.82  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.|++|+|||++|..+.+.
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            36999999999999999998775

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.45  E-value=0.012  Score=47.38  Aligned_cols=25  Identities=12%  Similarity=0.099  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|+||+|||+++..+|..+..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999877543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.45  E-value=0.0092  Score=43.94  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=20.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.-+++.|++|+|||++...+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.44  E-value=0.011  Score=43.07  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4556999999999999999888643

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=95.44  E-value=0.041  Score=45.14  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=16.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+++.+|+|+|||..+...+-
T Consensus        79 ~~lv~a~TGsGKT~~~~~~~~   99 (414)
T 3eiq_A           79 DVIAQAQSGTGKTATFAISIL   99 (414)
T ss_dssp             CEEECCCSCSSSHHHHHHHHH
T ss_pred             CEEEECCCCCcccHHHHHHHH
Confidence            378999999999987544333

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.43  E-value=0.0089  Score=43.40  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+-+++.|++|+|||++...+...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            345899999999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.42  E-value=0.011  Score=43.36  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++-+++.|++|+|||++...+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            345999999999999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.41  E-value=0.029  Score=43.72  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=21.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.+++.|++|+|||++..++...
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.41  E-value=0.012  Score=43.11  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            345999999999999999888765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.40  E-value=0.0085  Score=49.42  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCCC
Confidence            5789999999999999999887544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.40  E-value=0.0056  Score=45.59  Aligned_cols=25  Identities=12%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+..+.+.|++|+|||++.+.+...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3445899999999999999888654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.39  E-value=0.014  Score=42.85  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ...-+++.|++|+|||++...+...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3456999999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.0077  Score=51.22  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+++.|+..+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCcccc
Confidence            4789999999999999999998643

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=95.37  E-value=0.13  Score=44.81  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++.|.+|+|||++.+.+...+..
T Consensus       216 HlLIaG~TGSGKS~~L~tlI~sLl~  240 (574)
T 2iut_A          216 HLLVAGTTGSGKSVGVNAMLLSILF  240 (574)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eeEEECCCCCCHHHHHHHHHHHHHH
Confidence            6999999999999999998776543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.37  E-value=0.011  Score=43.49  Aligned_cols=26  Identities=27%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++-+++.|++|+|||++...+...-
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            34469999999999999999987753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.36  E-value=0.13  Score=41.01  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.++|+||+|||+|..++...
T Consensus        13 v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           13 VAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            889999999999999988654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.35  E-value=0.015  Score=43.71  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||.|+|||++..+|.-.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5789999999999999999988876

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.013  Score=42.82  Aligned_cols=24  Identities=17%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +..-+++.|++|+|||++...+..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            455699999999999999998874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.35  E-value=0.0091  Score=49.12  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+|||+|.++|+..+
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            57899999999999999997654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.34  E-value=0.011  Score=43.17  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++-+++.|++|+|||++...+...
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            345999999999999999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.32  E-value=0.0093  Score=47.77  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+|||++.++|+ .+
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999999 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.32  E-value=0.02  Score=53.46  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHH
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +|.+..++.+.+.+...    .   ....+.++|+.|+|||++|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~----d---~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL----R---PAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC----C---SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc----C---CCeEEEEEcCCCccHHHHHHHHHH
Confidence            89998888887777631    1   122688999999999999999885

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.31  E-value=0.013  Score=43.01  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35999999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.31  E-value=0.0058  Score=49.21  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++.|+..+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCCC
Confidence            4789999999999999999887543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.28  E-value=0.013  Score=43.26  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +..-+++.|++|+|||++...+..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            445699999999999999998853

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.26  E-value=0.013  Score=43.43  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=21.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+-+++.|++|+|||++...+...-
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34459999999999999999988753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.24  E-value=0.012  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++.+.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHhh
Confidence            35999999999999999877665

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.24  E-value=0.012  Score=43.33  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.+-+++.|++|+|||++...+...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3446999999999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.24  E-value=0.01  Score=42.77  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999998775

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.24  E-value=0.0098  Score=43.00  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..-+++.|++|+|||++...+...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            345899999999999999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.23  E-value=0.013  Score=43.75  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..-+++.|++|+|||++...+...-+
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~~   32 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQY   32 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34689999999999999999876533

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.21  E-value=0.013  Score=42.76  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .-+++.|++|+|||++...+...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45999999999999999998765

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.19  E-value=0.01  Score=47.83  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.|++|+|||++|..+.+.
T Consensus       148 ~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46999999999999999887553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.19  E-value=0.0099  Score=43.24  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+++.|++|+|||++...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.18  E-value=0.041  Score=52.68  Aligned_cols=103  Identities=12%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcC------------ccchhhhhcccccCCCCchhHHHHHHh----------H
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKG------------TSRFVHKFNSRIHFPNENHVSLYRLQL----------T  111 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~  111 (202)
                      +.++||+|+||||++.+|.+...+   ...            ....++-.++-....+.-+.+..++.+          .
T Consensus      1108 vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A         1108 LALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp             EEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred             EEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH


Q ss_pred             HHHHHhhhhCC----------------------------------------ceEEEEecC-CCCChhHHHHHHHhcccCc
Q psy1695         112 NWIISNVTACD----------------------------------------RAIFIFDEV-DKFPKGLLDVIIPFIDHHA  150 (202)
Q Consensus       112 ~~~~~~l~~~~----------------------------------------~~viiiDEi-d~~~~~~~~~L~~~le~~~  150 (202)
                      ..+.+++..+.                                        .+|+++||+ -.++++.-..+.+.+++..
T Consensus      1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A         1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc


Q ss_pred             ccccccCCceEEEEee
Q psy1695         151 VYNQISFQNTIFLFLS  166 (202)
Q Consensus       151 ~~~~~~~~~~~~Ilts  166 (202)
                             .+.++|++|
T Consensus      1265 -------~~~TvI~IA 1273 (1321)
T 4f4c_A         1265 -------EGRTCIVIA 1273 (1321)
T ss_dssp             -------SSSEEEEEC
T ss_pred             -------CCCEEEEec

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.17  E-value=0.012  Score=43.66  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      ++.-+++.|++|+|||++...+..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344589999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.14  E-value=0.014  Score=43.72  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++-+++.|++|+|||++...+...
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            4456999999999999999988754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.13  E-value=0.0053  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+.||+|+|||++.++|+-.+.+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhccccc
Confidence            357899999999999999998766

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.11  E-value=0.013  Score=49.51  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|+||+|||+++..++..+..
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999987653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.10  E-value=0.013  Score=45.76  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +..-+++.|++|+|||++...+...
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC
Confidence            3446899999999999999998653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.09  E-value=0.014  Score=42.63  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999998765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.09  E-value=0.015  Score=43.44  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ...-+++.|++|+|||++...+...-
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34459999999999999999998753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.08  E-value=0.0093  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.|.||+|+|||++.++|+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999997654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.07  E-value=0.013  Score=43.44  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+-+++.|++|+|||++...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999998765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.07  E-value=0.011  Score=47.22  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=19.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.+++.||+|+|||++.+.|+..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            345799999999999999997654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.06  E-value=0.013  Score=42.64  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=20.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +..-+++.|++|+|||++...+...
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3446999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.05  E-value=0.013  Score=42.91  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +-+++.|++|+|||++...+...-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            359999999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.05  E-value=0.013  Score=48.02  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||+|+|||++.+.|+..+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999998654

>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A

Probab=95.04  E-value=0.054  Score=45.93  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.-|+|+|||..+-+++..+..
T Consensus        58 ~~ilad~~GlGKT~~ai~~i~~~~~   82 (500)
T 1z63_A           58 GICLADDMGLGKTLQTIAVFSDAKK   82 (500)
T ss_dssp             CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            4678899999999998888777653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.04  E-value=0.017  Score=42.60  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=20.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ...-+++.|++|+|||++...+...
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3445899999999999999888754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.03  E-value=0.014  Score=43.60  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..-+++.|++|+|||++...+....+
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            34589999999999999999876533

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.00  E-value=0.016  Score=42.17  Aligned_cols=22  Identities=14%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+++.|++|+|||++...+...
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999888654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.99  E-value=0.017  Score=42.39  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .-+++.|++|+|||++...+...
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999888654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.98  E-value=0.014  Score=43.05  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999888654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.97  E-value=0.016  Score=45.32  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.|.|++|+|||++..++...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.96  E-value=0.016  Score=42.78  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      -+++.|++|+|||++...+..
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.95  E-value=0.018  Score=42.87  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++-+++.|++|+|||++...+...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            4556999999999999999888764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.95  E-value=0.014  Score=43.27  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la   72 (202)
                      .-+++.|++|+|||++...+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999998874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.95  E-value=0.02  Score=43.42  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++.-+++.|++|+|||++...+...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456999999999999999888654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.94  E-value=0.014  Score=43.22  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++-+++.|++|+|||++...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3446999999999999999988643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.93  E-value=0.014  Score=49.30  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+|||++.+.|+.....
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            5789999999999999999998644

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.92  E-value=0.016  Score=48.71  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.+.||+|+|||++.+.++....
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34589999999999999999987644

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.89  E-value=0.012  Score=42.93  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=19.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la   72 (202)
                      ++.-+++.|++|+|||++...+.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45569999999999999998874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.88  E-value=0.013  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+.||+|+|||||.++|+...
T Consensus        45 vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCcc
Confidence            7899999999999999998763

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.87  E-value=0.016  Score=42.53  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +-+++.|++|+|||++...+...
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            34899999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1qvra3	315	c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus	1e-12
d1r6bx3	315	c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A	2e-07
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	4e-06
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	0.002

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 14/179 (7%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 74
           LEE+L + V GQ+ AI  +  A++          + +      G  G GK  +   + ++
Sbjct: 17  LEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 76

Query: 75  IF----KRYKDKGTSRFVHKFNSRIHFPNENHV-SLYRLQLTNWIISNVTACDRAIFIFD 129
           +F       +   T        SR+      +V      QLT      V     ++ +FD
Sbjct: 77  LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA----VRRRPYSVILFD 132

Query: 130 EVDKFPKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSE 184
           E++K    + ++++  +D   +       + F+NT+ +  SN G   I+    +    E
Sbjct: 133 EIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYE 191

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 16  LEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA-ISLHGLPGTGKNYVTDFIVSS 74
           L ++LK  V GQ+ AI  +  A+K       H  K +      G  G GK  VT  +  +
Sbjct: 16  LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 75

Query: 75  IFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF 134
           +         S ++ +               +       +   V     A+ + DE++K 
Sbjct: 76  LGIELLRFDMSEYMERHTVSRLIGAPPGYVGF--DQGGLLTDAVIKHPHAVLLLDEIEKA 133

Query: 135 PKGLLDVIIPFIDHHAV----YNQISFQNTIFLFLSNSGGTEIMNTFLELRKSECIEFIF 190
              + ++++  +D+  +      +  F+N + +  +N+G  E     + L   +      
Sbjct: 134 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 193

Query: 191 Q 191
           +
Sbjct: 194 E 194

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 11/129 (8%)

Query: 14  RVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALA------ISLHGLPGTGKNYV 67
           R +  +L QH+ GQ  A   +  AL+N ++                I + G  G GK  +
Sbjct: 6   REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 65

Query: 68  TDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFI 127
              +       +     ++F           +       R    +   +        I  
Sbjct: 66  ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII-----RDLTDSAGGAIDAVEQNGIVF 120

Query: 128 FDEVDKFPK 136
            DE+DK  K
Sbjct: 121 IDEIDKICK 129

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 28/157 (17%)

Query: 24  VHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG 83
           V GQE  ++ +   L      R H+    A    G  G GK  +   +   +        
Sbjct: 14  VVGQEHVLTALANGLSL---GRIHH----AYLFSGTRGVGKTSIARLLAKGLNCETGITA 66

Query: 84  TSRFVHKFNSRIHFPNENHVSLYRL------------QLTNWIISNVTACDRAIFIFDEV 131
           T   V      I       V L  +             L + +          +++ DEV
Sbjct: 67  TPCGVCDNCREIE--QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 124

Query: 132 DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS 168
               +   + ++  ++          ++  FL  +  
Sbjct: 125 HMLSRHSFNALLKTLEEPP-------EHVKFLLATTD 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.96
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.96
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.82
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.81
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.69
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.68
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.65
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.65
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.64
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.63
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.63
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.6
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.56
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.54
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.52
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.5
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.49
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.44
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.34
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.32
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.3
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.17
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.16
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.08
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.07
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.9
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.65
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.46
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.39
d1okkd2	207	GTPase domain of the signal recognition particle r	98.37
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.34
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.29
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.26
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.24
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.21
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.16
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.13
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.11
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.09
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.06
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.05
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.05
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.04
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.01
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.97
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.94
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.88
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.81
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.81
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.8
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.8
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.78
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.76
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.71
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.71
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.7
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.69
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.69
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.69
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	97.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.63
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.61
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.58
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.55
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.55
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.54
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.52
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.5
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.45
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.45
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.44
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.42
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.31
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.28
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.26
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	97.23
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	97.21
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.2
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.17
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.14
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.13
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.02
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.02
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.97
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.95
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.94
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.93
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.92
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.91
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.83
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.81
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	96.8
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.74
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.59
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.57
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.51
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.49
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.46
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.41
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.41
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.37
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.35
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.35
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.31
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.31
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.3
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.29
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.28
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.26
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.25
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.24
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.23
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.22
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.19
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.17
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.14
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.13
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.12
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.11
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.09
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.04
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	96.04
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.04
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.03
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.01
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.94
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.84
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.83
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.77
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.72
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.67
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.67
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.6
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.59
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.59
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.59
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.58
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.55
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.55
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.54
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.54
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.52
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.51
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.5
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.46
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.45
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	95.42
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.38
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.37
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.36
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.34
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.2
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.18
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.15
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.13
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.13
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.11
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.08
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.06
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.04
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.03
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.95
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	94.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.9
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.72
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	94.69
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.63
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.62
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.6
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.51
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.27
d1z3ix2	298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	94.24
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.22
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.13
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.06
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	94.04
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	94.01
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.89
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.62
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.54
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.41
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.31
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.28
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.27
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.23
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.22
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	93.22
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.19
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.17
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.14
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.13
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	93.06
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.88
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.83
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.71
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.68
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	92.66
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.56
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	92.35
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.35
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.16
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.05
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.63
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	91.61
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.04
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	90.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.99
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	89.47
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	89.28
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	89.27
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	89.18
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	89.05
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.61
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	87.55
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.49
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.25
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.93
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	85.8
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.67
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	85.49
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	84.76
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	84.25
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.11
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	83.0
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	82.82
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	81.54
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	81.04
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	80.95
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.63
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	80.39

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.8e-29  Score=204.49  Aligned_cols=178  Identities=20%  Similarity=0.341  Sum_probs=133.5

Q ss_pred             CchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhh
Q psy1695          11 SNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVH   89 (202)
Q Consensus        11 ~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~   89 (202)
                      .++.+|++.|++.|+||+.|++.+.+++.....+-..+++|. +++|+||+|||||++|+.+|+.++.   .  ..+++.
T Consensus        12 ~~l~~l~~~L~~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~---~--~~~~~~   86 (315)
T d1qvra3          12 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---T--EEAMIR   86 (315)
T ss_dssp             HHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---S--GGGEEE
T ss_pred             HHHHHHHHHhcCeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcC---C--CcceEE
Confidence            357889999999999999999999999988755433356888 4889999999999999999999976   2  234444


Q ss_pred             hhc---------ccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----cc
Q psy1695          90 KFN---------SRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----IS  156 (202)
Q Consensus        90 ~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~  156 (202)
                      +++         +.+.+++++|++ +.+  .+.+.+.+..+|++||+|||+|++++++++.|++++++|.+++.    ++
T Consensus        87 ~~~~~~~~~~~~~~L~g~~~gyvG-~~~--~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~  163 (315)
T d1qvra3          87 IDMTEYMEKHAVSRLIGAPPGYVG-YEE--GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVD  163 (315)
T ss_dssp             ECTTTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred             EeccccccchhhhhhcCCCCCCcC-ccc--CChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEec
Confidence            444         334456677877 554  56678889999999999999999999999999999999987753    79


Q ss_pred             CCceEEEEeeCcChHHHHHHHH--------------HHHHhhhHHHHhccchhH
Q psy1695         157 FQNTIFLFLSNSGGTEIMNTFL--------------ELRKSECIEFIFQCQPLK  196 (202)
Q Consensus       157 ~~~~~~Iltsn~~~~~i~~~~~--------------~~~~~~~~r~~~~~~~~~  196 (202)
                      +++++||+|||.+.+.+.+...              .....++++|..+++.+.
T Consensus       164 ~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii  217 (315)
T d1qvra3         164 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV  217 (315)
T ss_dssp             CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCC
T ss_pred             CcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeee
Confidence            9999999999999887755422              234567888888877643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=4.5e-29  Score=202.26  Aligned_cols=175  Identities=20%  Similarity=0.284  Sum_probs=137.9

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK   90 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~   90 (202)
                      ++.+|++.|++.|+||+.|++.+..++.....+-..+++|. .++|+||||||||++|+.||+.+..        +++.+
T Consensus        12 ~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~--------~~i~~   83 (315)
T d1r6bx3          12 TLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--------ELLRF   83 (315)
T ss_dssp             HHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC--------EEEEE
T ss_pred             HHHHHHHHhCCeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC--------CeeEe
Confidence            58899999999999999999999999988655433356887 4999999999999999999999754        45555


Q ss_pred             hccc---------ccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccC
Q psy1695          91 FNSR---------IHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISF  157 (202)
Q Consensus        91 ~~~~---------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~  157 (202)
                      +++.         +.++.+++++ +..  ...+.+.+..++++|++|||+|++++++++.|++++++|.++++    +++
T Consensus        84 d~s~~~~~~~~~~l~g~~~gy~g-~~~--~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf  160 (315)
T d1r6bx3          84 DMSEYMERHTVSRLIGAPPGYVG-FDQ--GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADF  160 (315)
T ss_dssp             EGGGCSSSSCCSSSCCCCSCSHH-HHH--TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred             ccccccchhhhhhhcccCCCccc-ccc--CChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCc
Confidence            5443         3455677776 544  45677778899999999999999999999999999999998764    599


Q ss_pred             CceEEEEeeCcChHHHHHHHH-------------HHHHhhhHHHHhccchhHH
Q psy1695         158 QNTIFLFLSNSGGTEIMNTFL-------------ELRKSECIEFIFQCQPLKV  197 (202)
Q Consensus       158 ~~~~~Iltsn~~~~~i~~~~~-------------~~~~~~~~r~~~~~~~~~~  197 (202)
                      +++++|+|||.+...+.+...             .....++++|..|++.+.+
T Consensus       161 ~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~  213 (315)
T d1r6bx3         161 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW  213 (315)
T ss_dssp             TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEE
T ss_pred             cceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhc
Confidence            999999999998766543322             1356788999999886433

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.82  E-value=1.2e-20  Score=154.95  Aligned_cols=144  Identities=20%  Similarity=0.205  Sum_probs=93.9

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhcc---------------------CCCCCce-EEEEecCCCCcHHHHHH
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNR---------------------YHNTKAL-AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~---------------------~~~~~pl-~~ll~Gp~GtGKT~la~   69 (202)
                      -...+.++|++.|+||++|++.+..|+++++...                     .++..|. .+||.||+|||||.+|+
T Consensus         7 tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk   86 (364)
T d1um8a_           7 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ   86 (364)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHH
Confidence            4678999999999999999999999996532110                     0012454 59999999999999999


Q ss_pred             HHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHh-------hhhCCceEEEEecCCC---------
Q psy1695          70 FIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISN-------VTACDRAIFIFDEVDK---------  133 (202)
Q Consensus        70 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------l~~~~~~viiiDEid~---------  133 (202)
                      +||+.+.        .+++.++++.+..  .++++ +..  .+.+.+.       +...+++++++||+++         
T Consensus        87 ~LA~~~~--------~~~ir~D~s~~~e--~gyvg-~dv--~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~  153 (364)
T d1um8a_          87 TLAKHLD--------IPIAISDATSLTE--AGYVG-EDV--ENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS  153 (364)
T ss_dssp             HHHHHTT--------CCEEEEEGGGCC-----------C--THHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred             HHHhhcc--------cceeehhhhhccc--chhhH-hhh--ccchhhhhhhchhHHHHhhcccchhhhhhhhcccccccc
Confidence            9999853        3566676665533  34554 221  2233332       4455678999999999         


Q ss_pred             -----CChhHHHHHHHhcccCcc--cc----cccCCceEEEEeeCc
Q psy1695         134 -----FPKGLLDVIIPFIDHHAV--YN----QISFQNTIFLFLSNS  168 (202)
Q Consensus       134 -----~~~~~~~~L~~~le~~~~--~~----~~~~~~~~~Iltsn~  168 (202)
                           +++++++.|+++++.+..  ++    ..++.++++|.|+|.
T Consensus       154 ~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i  199 (364)
T d1um8a_         154 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDI  199 (364)
T ss_dssp             ------CHHHHHHHHHHHHCCEEC---------------CEECTTC
T ss_pred             ccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhh
Confidence                 778899999999996542  22    246788888888887

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=7e-20  Score=147.44  Aligned_cols=145  Identities=18%  Similarity=0.242  Sum_probs=93.3

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccC-----C-CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQNRY-----H-NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS   85 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~-----~-~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~   85 (202)
                      ....++++|++.|+||++|++.+..++.++.....     . ...|.++||+||||||||++|+++|+.+..        
T Consensus         4 ~p~~i~~~L~~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~--------   75 (309)
T d1ofha_           4 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA--------   75 (309)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC--------
T ss_pred             CHHHHHHHhcCcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc--------
Confidence            67899999999999999999999999965422110     0 113447999999999999999999999654        


Q ss_pred             chhhhhcccccCCCCchhHHHHHHhHHHHHHhhh-----hCCceEEEEecCCCCChh------------HHHHHHHhccc
Q psy1695          86 RFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVT-----ACDRAIFIFDEVDKFPKG------------LLDVIIPFIDH  148 (202)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-----~~~~~viiiDEid~~~~~------------~~~~L~~~le~  148 (202)
                      +++.++++.+.....  +....+...+.+.....     .+..+||+|||+|++++.            +++.|+.+++.
T Consensus        76 ~~~~i~~s~~~~~~~--~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg  153 (309)
T d1ofha_          76 PFIKVEATKFTEVGY--VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG  153 (309)
T ss_dssp             CEEEEEGGGGSSCCS--GGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred             chhccccccccccee--EeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcC
Confidence            455666665543211  10010111111111111     112479999999999763            66778888875


Q ss_pred             Cccccc---ccCCceEEEEee
Q psy1695         149 HAVYNQ---ISFQNTIFLFLS  166 (202)
Q Consensus       149 ~~~~~~---~~~~~~~~Ilts  166 (202)
                      ......   ++.++..||.+.
T Consensus       154 ~~~~~~~~~i~~s~ilfi~~g  174 (309)
T d1ofha_         154 STVSTKHGMVKTDHILFIASG  174 (309)
T ss_dssp             CEEEETTEEEECTTCEEEEEE
T ss_pred             CEEecCCeEEEccceeEEecc
Confidence            432221   356677777764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.4e-16  Score=122.71  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++........   .+.+++|+||||||||++|+++|+++..   .     +......     ...
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~---~~~~~L~~GPpGtGKT~lA~~la~~~~~---~-----~~~~~~~-----~~~   72 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGE---VLDHVLLAGPPGLGKTTLAHIIASELQT---N-----IHVTSGP-----VLV   72 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTC---CCCCEEEESSTTSSHHHHHHHHHHHHTC---C-----EEEEETT-----TCC
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCcHHHHHHHHHhccCC---C-----cccccCc-----ccc
Confidence            4699999999999999887654322   3337999999999999999999999755   1     1111111     111


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc-----------ccCCceEEEEeeCcCh
Q psy1695         102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ-----------ISFQNTIFLFLSNSGG  170 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~-----------~~~~~~~~Iltsn~~~  170 (202)
                      ..+    .+...+.   ......++++||++++++..++.++..++.+.....           ...++++||++||...
T Consensus        73 ~~~----~~~~~~~---~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~  145 (238)
T d1in4a2          73 KQG----DMAAILT---SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG  145 (238)
T ss_dssp             SHH----HHHHHHH---HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG
T ss_pred             cHH----HHHHHHH---hhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCc
Confidence            111    1111111   123457899999999999999999999988653211           1456788999998876


Q ss_pred             HH
Q psy1695         171 TE  172 (202)
Q Consensus       171 ~~  172 (202)
                      ..
T Consensus       146 ~~  147 (238)
T d1in4a2         146 LL  147 (238)
T ss_dssp             GS
T ss_pred             cc
Confidence            53

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=5.8e-17  Score=125.49  Aligned_cols=131  Identities=15%  Similarity=0.233  Sum_probs=85.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhhccc--
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKFNSR--   94 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~~~~--   94 (202)
                      ++++||+.+++.+..++...       +.|.+++|+||||+|||++|+++++.+........     ...+..+..+.  
T Consensus        12 ~dlig~~~~~~~L~~~i~~~-------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~   84 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLG-------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV   84 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTT-------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCT
T ss_pred             HHccChHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCC
Confidence            36999999998887666532       24557999999999999999999999876311100     00111111110  


Q ss_pred             ----ccCCCCchhHHHHHHhHHHHHHhhhh----CCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEee
Q psy1695          95 ----IHFPNENHVSLYRLQLTNWIISNVTA----CDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLS  166 (202)
Q Consensus        95 ----~~~~~~~~~~~~~~~l~~~~~~~l~~----~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilts  166 (202)
                          +.......+.    .+ ..+.+.+..    .++.|+||||+|.|+.+.++.|++.||++.       .++.||++|
T Consensus        85 ~~~~~~~~~~~~i~----~i-r~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~-------~~~~~il~t  152 (239)
T d1njfa_          85 DLIEIDAASRTKVE----DT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------EHVKFLLAT  152 (239)
T ss_dssp             TEEEEETTCSSSHH----HH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-------TTEEEEEEE
T ss_pred             eEEEecchhcCCHH----HH-HHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCC-------CCeEEEEEc
Confidence                0011111111    11 223333222    234799999999999999999999999977       789999999


Q ss_pred             CcChH
Q psy1695         167 NSGGT  171 (202)
Q Consensus       167 n~~~~  171 (202)
                      |....
T Consensus       153 n~~~~  157 (239)
T d1njfa_         153 TDPQK  157 (239)
T ss_dssp             SCGGG
T ss_pred             CCccc
Confidence            87544

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=6e-16  Score=119.30  Aligned_cols=126  Identities=12%  Similarity=0.159  Sum_probs=82.7

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++..+.....   .+.++||+||||||||++|+++|+.+..        ++.....+     ...
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~---~~~~~Ll~GPpG~GKTtla~~la~~~~~--------~~~~~~~~-----~~~   72 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKE---PLEHLLLFGPPGLGKTTLAHVIAHELGV--------NLRVTSGP-----AIE   72 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSS---CCCCEEEECCTTSCHHHHHHHHHHHHTC--------CEEEEETT-----TCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEECCCCCCHHHHHHHHHHHhCC--------CeEeccCC-----ccc
Confidence            3699999999999888876554322   3447999999999999999999999654        11111111     111


Q ss_pred             hhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc-----------cccCCceEEEEeeCcC
Q psy1695         102 HVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN-----------QISFQNTIFLFLSNSG  169 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~-----------~~~~~~~~~Iltsn~~  169 (202)
                      ..+..    ...+...+.  ...|+++||++.+++..++.++..++.+....           ..+..+.++|+++|..
T Consensus        73 ~~~~~----~~~~~~~~~--~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  145 (239)
T d1ixsb2          73 KPGDL----AAILANSLE--EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP  145 (239)
T ss_dssp             SHHHH----HHHHHTTCC--TTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCC
T ss_pred             cchhh----HHHHHhhcc--CCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCc
Confidence            11111    112222221  23699999999999999999999998753211           1244566788877754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=4e-16  Score=119.71  Aligned_cols=128  Identities=16%  Similarity=0.280  Sum_probs=84.1

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++...    .   .| +++|+||||+|||++|+++|+.+.+   ......++.++.+     ...
T Consensus        24 ~diig~~~~~~~l~~~i~~~----~---~~-~lll~Gp~G~GKTtla~~iak~l~~---~~~~~~~~e~n~s-----~~~   87 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKTG----S---MP-HLLFAGPPGVGKTTAALALARELFG---ENWRHNFLELNAS-----DER   87 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----C---CC-EEEEESCTTSSHHHHHHHHHHHHHG---GGHHHHEEEEETT-----CHH
T ss_pred             HHccCcHHHHHHHHHHHHcC----C---CC-eEEEECCCCCcHHHHHHHHHHHHHh---cccCCCeeEEecC-----ccc
Confidence            46999999999888777642    1   23 6899999999999999999999866   2111112222111     111


Q ss_pred             hhHHHHHHhHHHH-HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHH
Q psy1695         102 HVSLYRLQLTNWI-ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTE  172 (202)
Q Consensus       102 ~~~~~~~~l~~~~-~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~  172 (202)
                      ............. ..........|+++||++.+....++.|+.+++.+.       .++.||+++|.....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~-------~~~~~i~~~n~~~~i  152 (231)
T d1iqpa2          88 GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------SNVRFILSCNYSSKI  152 (231)
T ss_dssp             HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGGS
T ss_pred             chhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCC-------cceEEEeccCChhhc
Confidence            1110011001110 011223345899999999999999999999999876       788999999876543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=2.1e-16  Score=122.87  Aligned_cols=137  Identities=9%  Similarity=0.114  Sum_probs=85.2

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHhHhccC-CCCCc-eEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccc
Q psy1695          18 EQLKQHVHGQELAISHICGALKNHFQNRY-HNTKA-LAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRI   95 (202)
Q Consensus        18 ~~L~~~liGq~~a~~~l~~~l~~~~~~~~-~~~~p-l~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   95 (202)
                      +++...++|+...++.+.+....+..... ....| .++||+||||||||++|+++|+.+..        +++.+..+..
T Consensus         5 ~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~--------~~~~i~~~~~   76 (246)
T d1d2na_           5 SYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--------PFIKICSPDK   76 (246)
T ss_dssp             TTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--------SEEEEECGGG
T ss_pred             HhhccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccc--------cccccccccc
Confidence            45566799988888888777776442210 02234 46999999999999999999998633        4555544332


Q ss_pred             cCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC----------ChhHHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          96 HFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF----------PKGLLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~----------~~~~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ....   .+.........+.+........|++|||+|++          ...+.+.|+..++...    ...+++++|.|
T Consensus        77 ~~g~---~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v~vi~t  149 (246)
T d1d2na_          77 MIGF---SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----PQGRKLLIIGT  149 (246)
T ss_dssp             CTTC---CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----STTCEEEEEEE
T ss_pred             cccc---cccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCC----ccccceeeeec
Confidence            2111   11111111233444445556689999999754          2345677777777642    12346788889


Q ss_pred             eCcC
Q psy1695         166 SNSG  169 (202)
Q Consensus       166 sn~~  169 (202)
                      ||..
T Consensus       150 Tn~~  153 (246)
T d1d2na_         150 TSRK  153 (246)
T ss_dssp             ESCH
T ss_pred             cCCh
Confidence            9863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=6.7e-16  Score=118.08  Aligned_cols=127  Identities=18%  Similarity=0.289  Sum_probs=81.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+++++.+..++...    .   .| +++|+||||+|||++|+++++.+..   ......+.     ....+...
T Consensus        14 ~divg~~~~~~~L~~~i~~~----~---~~-~lLl~Gp~G~GKttl~~~la~~l~~---~~~~~~~~-----e~~~~~~~   77 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEG----K---LP-HLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVL-----ELNASDDR   77 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT----C---CC-CEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEE-----EECTTSCC
T ss_pred             HHccCcHHHHHHHHHHHHcC----C---CC-eEEEECCCCCChhHHHHHHHHHhhc---CCCcceeE-----EecccccC
Confidence            36999999988887766532    1   33 5899999999999999999999876   21111111     11111111


Q ss_pred             hhHHHHHHhHHHHH-HhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         102 HVSLYRLQLTNWII-SNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       102 ~~~~~~~~l~~~~~-~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .............. .........++||||++.++...++.|+..+++..       .+++|++++|...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~-------~~~~~~~~~~~~~~  141 (227)
T d1sxjc2          78 GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-------KNTRFCVLANYAHK  141 (227)
T ss_dssp             SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             CeeeeecchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcc-------cceeeccccCcHHH
Confidence            11111110011100 01112234799999999999999999999999876       78899999987654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=4.6e-16  Score=118.96  Aligned_cols=126  Identities=16%  Similarity=0.283  Sum_probs=82.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNEN  101 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (202)
                      ++++||+.+++.+..++...    .   .| +++|+||||+|||++|+.+|+.+.+   ..     ..............
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~----~---~~-~~ll~Gp~G~GKTt~a~~la~~l~~---~~-----~~~~~~~~n~~~~~   78 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDG----N---MP-HMIISGMPGIGKTTSVHCLAHELLG---RS-----YADGVLELNASDDR   78 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSC----C---CC-CEEEECSTTSSHHHHHHHHHHHHHG---GG-----HHHHEEEECTTSCC
T ss_pred             HHhcCCHHHHHHHHHHHHcC----C---CC-eEEEECCCCCCchhhHHHHHHHHhc---cc-----cccccccccccccC
Confidence            36999999888877666532    1   33 5899999999999999999999876   21     11111111112222


Q ss_pred             hhHHHHHHhHHHHHHh---hhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         102 HVSLYRLQLTNWIISN---VTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       102 ~~~~~~~~l~~~~~~~---l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .......... .....   .......++|+||+|.++...++.|+..+++..       .++.||+++|....
T Consensus        79 ~~~~i~~~~~-~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~-------~~~~~i~~~~~~~~  143 (224)
T d1sxjb2          79 GIDVVRNQIK-HFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-------NSTRFAFACNQSNK  143 (224)
T ss_dssp             SHHHHHTHHH-HHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             CceehhhHHH-HHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccc-------cceeeeeccCchhh
Confidence            1211111111 11111   111234799999999999999999999999876       78888888876544

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.6e-15  Score=114.94  Aligned_cols=130  Identities=6%  Similarity=0.077  Sum_probs=83.0

Q ss_pred             CChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcC-----ccchhhhh------cc
Q psy1695          25 HGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKG-----TSRFVHKF------NS   93 (202)
Q Consensus        25 iGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----~~~~~~~~------~~   93 (202)
                      .+|+.+.+.+.+.+..       .+.|.+++|+||+|+|||++|+.+|+.+.+..+.+.     ...+..+.      ..
T Consensus         5 Pw~~~~~~~l~~~~~~-------~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           5 PWLRPDFEKLVASYQA-------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY   77 (207)
T ss_dssp             GGGHHHHHHHHHHHHT-------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE
T ss_pred             cccHHHHHHHHHHHHc-------CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccc
Confidence            4677777777666553       225667999999999999999999999976322111     11111110      00


Q ss_pred             cccC-CCCchhHHHHHHhHHHHHHhhh----hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695          94 RIHF-PNENHVSLYRLQLTNWIISNVT----ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus        94 ~~~~-~~~~~~~~~~~~l~~~~~~~l~----~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      .+.. .....+.  .++ .+.+.+.+.    .+...|+||||+|+|+.++++.|+++||+++       .++.||++||.
T Consensus        78 ~~~~~~~~~~i~--~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~-------~~~~fIl~t~~  147 (207)
T d1a5ta2          78 TLAPEKGKNTLG--VDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------AETWFFLATRE  147 (207)
T ss_dssp             EECCCTTCSSBC--HHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-------TTEEEEEEESC
T ss_pred             hhhhhhcccccc--cch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhc-------ccceeeeeecC
Confidence            1100 1111121  111 222333333    2345899999999999999999999999987       89999999987


Q ss_pred             ChH
Q psy1695         169 GGT  171 (202)
Q Consensus       169 ~~~  171 (202)
                      ...
T Consensus       148 ~~~  150 (207)
T d1a5ta2         148 PER  150 (207)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.7e-15  Score=117.79  Aligned_cols=129  Identities=16%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      +|+|.+.+++.+.+.+.- +.++.     +...|.++||+||||||||++|+++|+.+..        +++.+.++.+..
T Consensus        10 di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~--------~~~~i~~~~l~~   80 (247)
T d1ixza_          10 DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------PFITASGSDFVE   80 (247)
T ss_dssp             GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC--------CEEEEEHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCC--------CEEEEEhHHhhh
Confidence            699999999998776643 21110     1234568999999999999999999998643        455554444332


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEEE
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                      ..   ++..... ...+..........||+|||+|.+..              .+.+.|+..|+.-.     ...+++||
T Consensus        81 ~~---~g~~~~~-l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~-----~~~~vivi  151 (247)
T d1ixza_          81 MF---VGVGAAR-VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----KDTAIVVM  151 (247)
T ss_dssp             SC---TTHHHHH-HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-----TTCCEEEE
T ss_pred             cc---ccHHHHH-HHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC-----CCCCEEEE
Confidence            22   2211111 22333333444457999999975411              24566777776422     22567888


Q ss_pred             EeeCcC
Q psy1695         164 FLSNSG  169 (202)
Q Consensus       164 ltsn~~  169 (202)
                      .|||..
T Consensus       152 ~tTn~~  157 (247)
T d1ixza_         152 AATNRP  157 (247)
T ss_dssp             EEESCG
T ss_pred             EeCCCc
Confidence            888864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.4e-15  Score=116.59  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=82.9

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      +++.|.+.+++.+.+.+.. +..+.     +...|.++||+||||||||++|+++|+++..        +++.+..+.+.
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~--------~~~~i~~~~l~   82 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--------PFFTISGSDFV   82 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--------CEEEECSCSST
T ss_pred             HHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC--------CEEEEEhHHhh
Confidence            4799999999999877653 22211     1234668999999999999999999999643        45555555544


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCCh--------------hHHHHHHHhcccCcccccccCCceEE
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPK--------------GLLDVIIPFIDHHAVYNQISFQNTIF  162 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~--------------~~~~~L~~~le~~~~~~~~~~~~~~~  162 (202)
                      ....+...   .. ...+.+........|++|||+|.+..              .+.+.|+..++...     +..++++
T Consensus        83 ~~~~g~~~---~~-l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~-----~~~~v~v  153 (256)
T d1lv7a_          83 EMFVGVGA---SR-VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIV  153 (256)
T ss_dssp             TSCCCCCH---HH-HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEE
T ss_pred             hcchhHHH---HH-HHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC-----CCCCEEE
Confidence            33222211   11 22333344445557999999976421              23556777676432     2256788


Q ss_pred             EEeeCcCh
Q psy1695         163 LFLSNSGG  170 (202)
Q Consensus       163 Iltsn~~~  170 (202)
                      |.|||...
T Consensus       154 IatTn~~~  161 (256)
T d1lv7a_         154 IAATNRPD  161 (256)
T ss_dssp             EEEESCTT
T ss_pred             EEeCCCcc
Confidence            88998654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.1e-14  Score=112.20  Aligned_cols=133  Identities=16%  Similarity=0.174  Sum_probs=81.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhccccc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIH   96 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   96 (202)
                      ++|.|.+.+++.+.+.+...+.++.     +...|.++||+||||||||++++++|+++..        +++.+..+.+.
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~--------~~~~i~~~~l~   75 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--------FFFLINGPEIM   75 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--------EEEEECHHHHT
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCC--------eEEEEEchhhc
Confidence            4699999999999998764332211     1234568999999999999999999999533        34444444333


Q ss_pred             CCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh-----------HHHHHHHhcccCcccccccCCceEEEEe
Q psy1695          97 FPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG-----------LLDVIIPFIDHHAVYNQISFQNTIFLFL  165 (202)
Q Consensus        97 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~-----------~~~~L~~~le~~~~~~~~~~~~~~~Ilt  165 (202)
                      ....+.   .... ...+..........||+|||+|.+-..           +.+.++..++..     ....++++|.|
T Consensus        76 ~~~~g~---~~~~-l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vlvi~t  146 (258)
T d1e32a2          76 SKLAGE---SESN-LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----KQRAHVIVMAA  146 (258)
T ss_dssp             TSCTTH---HHHH-HHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTC-----CCSSCEEEEEE
T ss_pred             cccccc---HHHH-HHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccc-----cccCCccEEEe
Confidence            322221   1111 223333334445579999999888532           233444433322     23356788889


Q ss_pred             eCcChH
Q psy1695         166 SNSGGT  171 (202)
Q Consensus       166 sn~~~~  171 (202)
                      ||....
T Consensus       147 Tn~~~~  152 (258)
T d1e32a2         147 TNRPNS  152 (258)
T ss_dssp             ESCGGG
T ss_pred             CCCccc
Confidence            987654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.2e-15  Score=115.67  Aligned_cols=144  Identities=14%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             ccCCCchHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCc--
Q psy1695           7 FIQSSNVRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGT--   84 (202)
Q Consensus         7 ~~~~~~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~--   84 (202)
                      |+.+|+...++     +++|++.+++.+...+.    ..   ..+.+++|+||||||||++|+++|+.+.........  
T Consensus         1 W~eky~P~~~~-----diig~~~~~~~L~~~~~----~~---~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~   68 (252)
T d1sxje2           1 WVDKYRPKSLN-----ALSHNEELTNFLKSLSD----QP---RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID   68 (252)
T ss_dssp             CTTTTCCCSGG-----GCCSCHHHHHHHHTTTT----CT---TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred             CCcccCCCCHH-----HccCcHHHHHHHHHHHH----cC---CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccc
Confidence            34556666554     59999887777654332    22   133369999999999999999999997541100000  


Q ss_pred             --------cchhhhh--c----ccccCCCCchhHHHHHHhHHHHHH-------------hhhhCCceEEEEecCCCCChh
Q psy1695          85 --------SRFVHKF--N----SRIHFPNENHVSLYRLQLTNWIIS-------------NVTACDRAIFIFDEVDKFPKG  137 (202)
Q Consensus        85 --------~~~~~~~--~----~~~~~~~~~~~~~~~~~l~~~~~~-------------~l~~~~~~viiiDEid~~~~~  137 (202)
                              .......  .    ........+...  ..........             ........+++|||+|.++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~  146 (252)
T d1sxje2          69 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNND--RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD  146 (252)
T ss_dssp             --------------CCEECSSEEEECCC----CC--HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH
T ss_pred             cccccccccchhhhhhccCCccceeeecccccCC--cceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc
Confidence                    0000000  0    000000000000  0000111100             011123469999999999999


Q ss_pred             HHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         138 LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       138 ~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .++.|++.++++.       .++.||++||....
T Consensus       147 ~~~~l~~~~e~~~-------~~~~~Il~tn~~~~  173 (252)
T d1sxje2         147 AQAALRRTMEKYS-------KNIRLIMVCDSMSP  173 (252)
T ss_dssp             HHHHHHHHHHHST-------TTEEEEEEESCSCS
T ss_pred             cchhhhccccccc-------ccccceeeeccccc
Confidence            9999999999876       78889999987643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=7.2e-15  Score=112.64  Aligned_cols=129  Identities=22%  Similarity=0.242  Sum_probs=79.7

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +++||+.+++.+..++.    ...   .| +++|+||||+|||++++++++.+......  .......+.+     ....
T Consensus        13 diig~~~~~~~l~~~i~----~~~---~~-~lll~Gp~G~GKTtl~~~i~~~l~~~~~~--~~~~~~~~~~-----~~~~   77 (237)
T d1sxjd2          13 EVTAQDHAVTVLKKTLK----SAN---LP-HMLFYGPPGTGKTSTILALTKELYGPDLM--KSRILELNAS-----DERG   77 (237)
T ss_dssp             TCCSCCTTHHHHHHHTT----CTT---CC-CEEEECSTTSSHHHHHHHHHHHHHHHHHH--TTSEEEECSS-----SCCC
T ss_pred             HccCcHHHHHHHHHHHH----cCC---CC-eEEEECCCCCChHHHHHHHHHHHcCCccc--ccchhheecc-----cccc
Confidence            58999988877765553    221   23 58999999999999999999997541000  0000111110     0000


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      .......+..           ...+.....+..|+||||++.++...++.+..+++...       .+..||+++|...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~-------~~~~~i~~~~~~~~  150 (237)
T d1sxjd2          78 ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------GVTRFCLICNYVTR  150 (237)
T ss_dssp             HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------TTEEEEEEESCGGG
T ss_pred             chHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcccccc-------cccccccccccccc
Confidence            1000000000           01112233445799999999999999999999999876       78888888877655


Q ss_pred             HH
Q psy1695         172 EI  173 (202)
Q Consensus       172 ~i  173 (202)
                      .+
T Consensus       151 ~~  152 (237)
T d1sxjd2         151 II  152 (237)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=6e-14  Score=105.39  Aligned_cols=104  Identities=9%  Similarity=0.094  Sum_probs=71.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhC----CceE
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTAC----DRAI  125 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~v  125 (202)
                      .+.+++|+||+|+|||++|..+++++......  +.+++.+.      +....++ .+ + .+.+...+...    .+.|
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~--h~D~~~i~------~~~~~I~-Id-~-IR~i~~~~~~~~~~~~~Kv   82 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPK--ASDVLEID------PEGENIG-ID-D-IRTIKDFLNYSPELYTRKY   82 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC--TTTEEEEC------CSSSCBC-HH-H-HHHHHHHHTSCCSSSSSEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccC--CCCEEEEe------CCcCCCC-HH-H-HHHHHHHHhhCcccCCCEE
Confidence            45589999999999999999999987541000  11222211      1111222 11 2 22344444433    3489


Q ss_pred             EEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChH
Q psy1695         126 FIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGT  171 (202)
Q Consensus       126 iiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~  171 (202)
                      +||||+|+|+.+++|+|++.||+++       .+++||++||....
T Consensus        83 iIId~ad~l~~~aqNaLLK~LEEPp-------~~t~fiLit~~~~~  121 (198)
T d2gnoa2          83 VIVHDCERMTQQAANAFLKALEEPP-------EYAVIVLNTRRWHY  121 (198)
T ss_dssp             EEETTGGGBCHHHHHHTHHHHHSCC-------TTEEEEEEESCGGG
T ss_pred             EEEeCccccchhhhhHHHHHHhCCC-------CCceeeeccCChhh
Confidence            9999999999999999999999988       89999999987643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.9e-14  Score=112.82  Aligned_cols=132  Identities=15%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccC-----CCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRY-----HNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHF   97 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~-----~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~   97 (202)
                      +|.|.+++++.+.+.+...+..+.     +...|.++||+||||||||++|+++|..+..        +++.+..+.+..
T Consensus         8 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~--------~~~~~~~~~l~~   79 (265)
T d1r7ra3           8 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELLT   79 (265)
T ss_dssp             SCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC--------EEEEECHHHHHT
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC--------cEEEEEHHHhhh
Confidence            588999988888887765432210     0124457999999999999999999999643        445444444333


Q ss_pred             CCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCChh--------------HHHHHHHhcccCcccccccCCceEEE
Q psy1695          98 PNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFPKG--------------LLDVIIPFIDHHAVYNQISFQNTIFL  163 (202)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~~~--------------~~~~L~~~le~~~~~~~~~~~~~~~I  163 (202)
                      ...+..   ... ...+..........|++|||+|.+-..              +.+.|+..|+.-.     ...+.++|
T Consensus        80 ~~~~~~---~~~-l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~v~vi  150 (265)
T d1r7ra3          80 MWFGES---EAN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----TKKNVFII  150 (265)
T ss_dssp             SCTTTH---HHH-HHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------CCEEE
T ss_pred             ccccch---HHH-HHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC-----CCCCEEEE
Confidence            322221   111 222333334444589999999877531              3466776665421     22567889


Q ss_pred             EeeCcChH
Q psy1695         164 FLSNSGGT  171 (202)
Q Consensus       164 ltsn~~~~  171 (202)
                      +|||....
T Consensus       151 ~ttn~~~~  158 (265)
T d1r7ra3         151 GATNRPDI  158 (265)
T ss_dssp             ECCBSCTT
T ss_pred             EeCCCchh
Confidence            99987653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.44  E-value=1.2e-13  Score=107.03  Aligned_cols=133  Identities=16%  Similarity=0.125  Sum_probs=86.2

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCch
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENH  102 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (202)
                      +.|||..+++.+.+.+.+....+.      +++++||+||||+++|++|+.....   .  ...++..++..+.     .
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~------pvlI~Ge~GtGK~~~A~~ih~~s~~---~--~~~~~~~~~~~~~-----~   64 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAEC------PVLITGESGVGKEVVARLIHKLSDR---S--KEPFVALNVASIP-----R   64 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCS------CEEEECSTTSSHHHHHHHHHHHSTT---T--TSCEEEEETTTSC-----H
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCC------CEEEECCCCcCHHHHHHHHHHhcCC---c--ccccccchhhhhh-----h
Confidence            368999999999999998765543      5799999999999999999887433   1  1223322222110     0


Q ss_pred             hHHHHHHhHH-----------HHHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccccc----ccCCceEEEEeeC
Q psy1695         103 VSLYRLQLTN-----------WIISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQ----ISFQNTIFLFLSN  167 (202)
Q Consensus       103 ~~~~~~~l~~-----------~~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~----~~~~~~~~Iltsn  167 (202)
                      .. +...+.+           ...+.+..+..+.++|||+|.++...|..|+++++++.+...    ....++.+|++|+
T Consensus        65 ~~-~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~  143 (247)
T d1ny5a2          65 DI-FEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATN  143 (247)
T ss_dssp             HH-HHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEES
T ss_pred             cc-cHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecC
Confidence            00 0000000           000123344567899999999999999999999998764321    1223567899998


Q ss_pred             cChHH
Q psy1695         168 SGGTE  172 (202)
Q Consensus       168 ~~~~~  172 (202)
                      ...+.
T Consensus       144 ~~l~~  148 (247)
T d1ny5a2         144 RNIKE  148 (247)
T ss_dssp             SCHHH
T ss_pred             CCHHH
Confidence            77544

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.38  E-value=2.5e-13  Score=109.53  Aligned_cols=144  Identities=11%  Similarity=0.087  Sum_probs=80.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhcccc-Cc--C---ccchhhhhc----
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYK-DK--G---TSRFVHKFN----   92 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~-~~--~---~~~~~~~~~----   92 (202)
                      .|+||+.+++.+.-++...  +      ..++||.||||||||++|++++..|-.-.. .+  .   .........    
T Consensus         8 ~I~Gq~~~kral~laa~~~--~------~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVDP--G------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS   79 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHCG--G------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred             hccCcHHHHHHHHHHHhcc--C------CCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccc
Confidence            5999999998765444311  1      126999999999999999999987622000 00  0   000000000    


Q ss_pred             -----------ccccCCCC-chhHHHHHHhHHHH--------HHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCccc
Q psy1695          93 -----------SRIHFPNE-NHVSLYRLQLTNWI--------ISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVY  152 (202)
Q Consensus        93 -----------~~~~~~~~-~~~~~~~~~l~~~~--------~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~  152 (202)
                                 ....+... ..++...  .....        .+.+..+..+|+++||++++++.+++.|++.|+++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~G~~d--~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~  157 (333)
T d1g8pa_          80 TNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV  157 (333)
T ss_dssp             CCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred             cCcccccCceeeccCCCCcccccCcch--hhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEE
Confidence                       00000000 0000000  00000        01122233589999999999999999999999998764


Q ss_pred             c---cc--c-CCceEEEEeeCcChHHHHHH
Q psy1695         153 N---QI--S-FQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       153 ~---~~--~-~~~~~~Iltsn~~~~~i~~~  176 (202)
                      -   +.  . -.+..+|.|+|..+..+...
T Consensus       158 i~r~g~~~~~p~~f~liaa~Np~~~~l~~~  187 (333)
T d1g8pa_         158 VERDGLSIRHPARFVLVGSGNPEEGDLRPQ  187 (333)
T ss_dssp             ECCTTCCEEEECCEEEEEEECSCSCCCCHH
T ss_pred             ecccCceecCCCCEEEEEecCccccccccc
Confidence            2   21  1 23557788888866544443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.34  E-value=2.4e-12  Score=102.80  Aligned_cols=99  Identities=8%  Similarity=0.059  Sum_probs=60.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK  133 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~  133 (202)
                      ++|+||||||||.+|+++|..+..      ..+++.+..+.+...   +++.+...+.. +.+....  ..||||||+|.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~------~~~~~~~~~~~~~~~---~~G~~e~~~~~-~f~~a~~--~~ilf~DEid~  193 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGG------KDKYATVRFGEPLSG---YNTDFNVFVDD-IARAMLQ--HRVIVIDSLKN  193 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHT------TSCCEEEEBSCSSTT---CBCCHHHHHHH-HHHHHHH--CSEEEEECCTT
T ss_pred             EEEECCCCccHHHHHHHHHHHhcC------CCCeEEEEhhHhhhc---ccchHHHHHHH-HHHHHhh--ccEEEeehhhh
Confidence            667999999999999999999653      234444444444333   33323333332 3333333  35999999998


Q ss_pred             CChh------------HHHHHHHhcccCcccccccCCceEEEEeeCcC
Q psy1695         134 FPKG------------LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSG  169 (202)
Q Consensus       134 ~~~~------------~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~  169 (202)
                      +...            +.+.|+.-|+.-.     +.+++++|.+||..
T Consensus       194 ~~~~r~~~~~~~~~~r~v~~lL~e~dg~~-----~~~~v~viaatN~~  236 (321)
T d1w44a_         194 VIGAAGGNTTSGGISRGAFDLLSDIGAMA-----ASRGCVVIASLNPT  236 (321)
T ss_dssp             TC-----------CCHHHHHHHHHHHHHH-----HHHTCEEEEECCCC
T ss_pred             hccccccCCCCCcchhhhhhhhhhccccc-----cCCCeEEEEeCCCc
Confidence            8542            3455555554221     22678999999963

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.4e-12  Score=97.02  Aligned_cols=129  Identities=14%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCC
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPN   99 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~   99 (202)
                      +-++|++.-++.+...+.+.-.+        +.+|+||||||||.+++.+|+.+.... +... ...++.++.+.+... 
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~--------n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg-   92 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-   92 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSC--------EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT-
T ss_pred             CCCcCcHHHHHHHHHHHhccCCC--------CeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhcc-
Confidence            35899999998888777654322        579999999999999999999876510 0101 233444444433221 


Q ss_pred             CchhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC--------hhHHHHHHHhcccCcccccccCCceEEEEeeCc
Q psy1695         100 ENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP--------KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNS  168 (202)
Q Consensus       100 ~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~--------~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~  168 (202)
                      ..+.+.+++.+...+.+.....+..|+||||++.+-        .++.+.|.+.|++|         ...+|.+|+.
T Consensus        93 ~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg---------~l~~IgatT~  160 (195)
T d1jbka_          93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------ELHCVGATTL  160 (195)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT---------SCCEEEEECH
T ss_pred             CCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCC---------CceEEecCCH
Confidence            234455665555544443333445689999997662        24679999999985         4556666654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.30  E-value=2.2e-11  Score=93.95  Aligned_cols=137  Identities=15%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-----------
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-----------   90 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-----------   90 (202)
                      +.++|++..++.+.+++..++.++.  ..|.+++|+||||||||++++.+++.+..   ... ..++..           
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~--~~~~~lll~GppGtGKT~l~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~   89 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPG--HHYPRATLLGRPGTGKTVTLRKLWELYKD---KTT-ARFVYINGFIYRNFTAI   89 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTT--SSCCEEEEECCTTSSHHHHHHHHHHHHTT---SCC-CEEEEEETTTCCSHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCC--CCCCceEEECCCCCCHHHHHHHHHHHHhc---ccC-CcEEEecchhhhhhhhh
Confidence            5689999999999999998876643  34557999999999999999999999865   211 001100           


Q ss_pred             ---hccccc--CCCCchhHHHHHHhHHHHHHhhh-hCCceEEEEecCCCCChhHHHHHHHhcccCcccccccCCceEEEE
Q psy1695          91 ---FNSRIH--FPNENHVSLYRLQLTNWIISNVT-ACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLF  164 (202)
Q Consensus        91 ---~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~-~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Il  164 (202)
                         ......  .......   ...+...+...+. .....++++|+++.+.....+.+..++....   .....+..+|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~  163 (276)
T d1fnna2          90 IGEIARSLNIPFPRRGLS---RDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD---KLGAFRIALVI  163 (276)
T ss_dssp             HHHHHHHTTCCCCSSCCC---HHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH---HHSSCCEEEEE
T ss_pred             hhhhHHhhhhhhhhhccc---hhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccc---cccccceEEee
Confidence               000000  1111111   1111223333333 3345788899999999888777776665421   12335667788


Q ss_pred             eeCcCh
Q psy1695         165 LSNSGG  170 (202)
Q Consensus       165 tsn~~~  170 (202)
                      ++|...
T Consensus       164 ~~~~~~  169 (276)
T d1fnna2         164 VGHNDA  169 (276)
T ss_dssp             EESSTH
T ss_pred             cCCchh
Confidence            887653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=6.5e-12  Score=104.73  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=59.5

Q ss_pred             chHHHHHHHHhhCCChHHHHHHHHHHHHHhHhc---cCCC---CCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCcc
Q psy1695          12 NVRVLEEQLKQHVHGQELAISHICGALKNHFQN---RYHN---TKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTS   85 (202)
Q Consensus        12 ~~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~---~~~~---~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~   85 (202)
                      .+..+.++|++.|+||++|++.+.-++.+++..   +...   -.|..+||.||||||||++|+.||+.+.        .
T Consensus         4 tP~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~--------V   75 (443)
T d1g41a_           4 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--------A   75 (443)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--------C
T ss_pred             CHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhC--------C
Confidence            578899999999999999999999999876421   1101   1255799999999999999999999863        4


Q ss_pred             chhhhhcccc
Q psy1695          86 RFVHKFNSRI   95 (202)
Q Consensus        86 ~~~~~~~~~~   95 (202)
                      +|+..+.+.+
T Consensus        76 PFv~~daT~f   85 (443)
T d1g41a_          76 PFIKVEATKF   85 (443)
T ss_dssp             CEEEEEGGGG
T ss_pred             CEEEeeccee
Confidence            6766665544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=2e-12  Score=99.75  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhcc---------CCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          22 QHVHGQELAISHICGALKNHFQNR---------YHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~---------~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++++|++.+++.+...+..+....         .....+.+++|+||||||||++|+++|+++..
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            469999999999999887643110         00112337999999999999999999999654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.9e-11  Score=92.47  Aligned_cols=118  Identities=12%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cC-cCccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KD-KGTSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~  100 (202)
                      -++|.+.-++.+...+.+...        .+.+|+||||||||.+++.+|+.+.... +. .....++..+.+.+... .
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~k--------~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag-~   89 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRRK--------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG-T   89 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSSS--------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC-C
T ss_pred             cccChHHHHHHHHHHHhcCcc--------CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhcc-C
Confidence            589999999988887765322        2578999999999999999999876510 00 01223333443333221 1


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCCC---------hhHHHHHHHhcccCc
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKFP---------KGLLDVIIPFIDHHA  150 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~~---------~~~~~~L~~~le~~~  150 (202)
                      .+.+.+.+.+. .+.+.+...+..|+||||++.+-         .++.+.|.+.|.+|.
T Consensus        90 ~~~g~~e~r~~-~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~  147 (268)
T d1r6bx2          90 KYRGDFEKRFK-ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK  147 (268)
T ss_dssp             CCSSCHHHHHH-HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCC
T ss_pred             ccchhHHHHHH-HHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCC
Confidence            22333544433 33444556666899999998772         257888888998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.16  E-value=1.9e-11  Score=92.51  Aligned_cols=105  Identities=11%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHHHHHhhhhCCceEEEEecCCC
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNWIISNVTACDRAIFIFDEVDK  133 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~  133 (202)
                      ++++||+|||||||+.++++.+..   .+....++.  ...+..   .............+.+.+.  ..++++|||++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~---~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~  108 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK---RGYRVIYSS--ADDFAQ---AMVEHLKKGTINEFRNMYK--SVDLLLLDDVQF  108 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH---TTCCEEEEE--HHHHHH---HHHHHHHHTCHHHHHHHHH--TCSEEEEECGGG
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc---CccceEEec--hHHHHH---HHHHHHHccchhhHHHHHh--hccchhhhhhhh
Confidence            789999999999999999999765   321111111  110000   0000000000112222233  247999999998


Q ss_pred             CC--hhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695         134 FP--KGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  174 (202)
Q Consensus       134 ~~--~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~  174 (202)
                      ..  +..+..|..++..-.      .++..+|+||+..++.+.
T Consensus       109 i~~~~~~~~~lf~lin~~~------~~~~~iiits~~~p~~l~  145 (213)
T d1l8qa2         109 LSGKERTQIEFFHIFNTLY------LLEKQIILASDRHPQKLD  145 (213)
T ss_dssp             GTTCHHHHHHHHHHHHHHH------HTTCEEEEEESSCGGGCT
T ss_pred             hcCchHHHHHHHHHHHHHh------hccceEEEecCCcchhcc
Confidence            75  456666777666421      156678889998877664

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=1.6e-10  Score=94.49  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccc-cCcC-ccchhhhhcccccCCCC
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRY-KDKG-TSRFVHKFNSRIHFPNE  100 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~  100 (202)
                      -++|.+.-++.+...+.+.-.+        ..+|+||||||||.++..+|+.+.... +... ...++.++.+.+... .
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~--------n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag-~   93 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKN--------NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-A   93 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCC--------CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred             CCcCcHHHHHHHHHHHhcCCCC--------CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcc-c
Confidence            4899999999998888765332        347899999999999999999876510 0111 223333443333211 1


Q ss_pred             chhHHHHHHhHHHHHHhhhhCCceEEEEecCCCC--------ChhHHHHHHHhcccCc
Q psy1695         101 NHVSLYRLQLTNWIISNVTACDRAIFIFDEVDKF--------PKGLLDVIIPFIDHHA  150 (202)
Q Consensus       101 ~~~~~~~~~l~~~~~~~l~~~~~~viiiDEid~~--------~~~~~~~L~~~le~~~  150 (202)
                      .+.+.+.+.+..-+.+.....+..|+||||++.+        +.++.+.|.+.|..|.
T Consensus        94 ~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~  151 (387)
T d1qvra2          94 KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE  151 (387)
T ss_dssp             ----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTC
T ss_pred             CcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCC
Confidence            2333455444333333323333467899999877        2367899999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.07  E-value=3.9e-10  Score=87.23  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=43.7

Q ss_pred             HhhCCChHHHHHHHHHHHHHhHhccCCCCCce-EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          21 KQHVHGQELAISHICGALKNHFQNRYHNTKAL-AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        21 ~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl-~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.|++..++.+...+...+..+..+..+. +++|+||||||||++++++++.+..
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            35789999999999988877655433122333 4778999999999999999999754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.90  E-value=6.7e-09  Score=79.89  Aligned_cols=48  Identities=21%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          30 AISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        30 a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+.+.+++.....+....+.|.+++|+||||||||++|+++|..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            334444444444444433568889999999999999999999999754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.89  E-value=5.2e-09  Score=84.75  Aligned_cols=60  Identities=12%  Similarity=0.011  Sum_probs=40.0

Q ss_pred             chHHHHHHHH---hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          12 NVRVLEEQLK---QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        12 ~~~~l~~~L~---~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +...+...++   ..+.|++..   +..++..++.+.+   ++.+++|+||||||||++|+++|+.+..
T Consensus       118 d~~~~~~il~~l~~~~~~~~~~---i~~~l~~~~~~~~---~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         118 DIEEWMAGVAWLHCLLPKMDSV---VYDFLKCMVYNIP---KKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             CHHHHHHHHHHHTTTSTTHHHH---HHHHHHHHHHCCT---TCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhcccchHHH---HHHHHHHHHhCCC---CcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4455554444   345555544   4444555554433   4448999999999999999999999744

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=1e-07  Score=68.59  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -++++||+|+||||+++.++..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            3789999999999999999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.4e-06  Score=64.81  Aligned_cols=122  Identities=10%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-------------cccc-----cCCCCchhHHHHHH
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------------NSRI-----HFPNENHVSLYRLQ  109 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~-----~~~~~~~~~~~~~~  109 (202)
                      .+.|.+++|+||+|+|||+.+--||..+..   .+....++..+             ...+     ....+...   ...
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~---~~~   79 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS---ASV   79 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCH---HHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCH---HHH
Confidence            346888999999999999999889988654   32111111110             0000     00111111   011


Q ss_pred             hHHHHHHhhhhCCceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHH
Q psy1695         110 LTNWIISNVTACDRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNT  176 (202)
Q Consensus       110 l~~~~~~~l~~~~~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~  176 (202)
                       .....+......+++++||=+.+.+.+  ..+.|.++.+--...+...-...++++.++.+.+.+.+.
T Consensus        80 -l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~  147 (211)
T d2qy9a2          80 -IFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA  147 (211)
T ss_dssp             -HHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH
Confidence             111122223345689999999988763  334444443321100111124677778788887766554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=1.8e-06  Score=64.33  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++|.+++|+||+|+|||+.+--||..+..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~   37 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD   37 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            458888999999999999998888887654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.39  E-value=8.9e-08  Score=70.61  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHh
Q psy1695          31 ISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQL  110 (202)
Q Consensus        31 ~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (202)
                      .-....++..++.+.+   +-..++|+|||+||||++|.+|.+.+..   ..     +...     .. .+... ...  
T Consensus        36 ~~~Fl~~l~~~l~~~P---Kkn~i~~~GP~~TGKS~f~~sl~~~l~G---~v-----is~~-----N~-~s~F~-Lq~--   95 (205)
T d1tuea_          36 FITFLGALKSFLKGTP---KKNCLVFCGPANTGKSYFGMSFIHFIQG---AV-----ISFV-----NS-TSHFW-LEP--   95 (205)
T ss_dssp             HHHHHHHHHHHHHTCT---TCSEEEEESCGGGCHHHHHHHHHHHHTC---EE-----CCCC-----CS-SSCGG-GGG--
T ss_pred             HHHHHHHHHHHHcCCC---CceEEEEECCCCccHHHHHHHHHHHhCC---EE-----Eecc-----CC-CCCcc-ccc--
Confidence            3344566677665533   3347999999999999999999999755   21     1100     00 00111 110  


Q ss_pred             HHHHHHhhhhCCceEEEEecCCCCChhHHHH-HHHhcccCcccc------cccCCceEEEEeeCcCh
Q psy1695         111 TNWIISNVTACDRAIFIFDEVDKFPKGLLDV-IIPFIDHHAVYN------QISFQNTIFLFLSNSGG  170 (202)
Q Consensus       111 ~~~~~~~l~~~~~~viiiDEid~~~~~~~~~-L~~~le~~~~~~------~~~~~~~~~Iltsn~~~  170 (202)
                             +  ....++++||+........+. +..+++...+.-      .+......+|+|||...
T Consensus        96 -------l--~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~  153 (205)
T d1tuea_          96 -------L--TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP  153 (205)
T ss_dssp             -------G--TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred             -------c--cCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCC
Confidence                   1  123688999987765555555 455555443321      12344456889999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.37  E-value=3.1e-06  Score=62.78  Aligned_cols=121  Identities=11%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhc-------------cccc-----CCCCchhHHHHHHhH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFN-------------SRIH-----FPNENHVSLYRLQLT  111 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------~~~~-----~~~~~~~~~~~~~l~  111 (202)
                      +|..++|+||+|+|||+++--||..+..   .+....++..+.             ..+.     ........   ..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~---~~~~   78 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPA---ALAY   78 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHH---HHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHH---HHHH
Confidence            5668999999999999999889988654   321111111111             0000     00101000   0001


Q ss_pred             HHHHHhhhhCCceEEEEecCCCCChh--HHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHHHH
Q psy1695         112 NWIISNVTACDRAIFIFDEVDKFPKG--LLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMNTF  177 (202)
Q Consensus       112 ~~~~~~l~~~~~~viiiDEid~~~~~--~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~~~  177 (202)
                      .. .........++|+||=+.+.+.+  ....|..+.+.....+...-..+++++.++.+.+.+.+..
T Consensus        79 ~~-~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~  145 (207)
T d1okkd2          79 DA-VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAK  145 (207)
T ss_dssp             HH-HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHH
T ss_pred             HH-HHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHH
Confidence            11 11122234689999999988753  3333433332210001111256778888888877665543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=4.3e-06  Score=61.24  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |..++++|.||+||||+|+.|++.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            667999999999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.29  E-value=4.8e-06  Score=63.16  Aligned_cols=43  Identities=21%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             hhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          22 QHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        22 ~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++|++..++.+.+.      .      +.+++++||+|+|||++++.+++.+.
T Consensus        12 ~~f~GR~~el~~l~~~------~------~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL------R------APITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             GGSCCCHHHHHHHHHT------C------SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             hhCCChHHHHHHHHhc------c------CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            5799999888877532      1      12688999999999999999988753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.28  E-value=9.1e-06  Score=60.36  Aligned_cols=29  Identities=28%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.+++|+||+|+|||+++--||..+..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46878999999999999998888887654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.26  E-value=7e-06  Score=60.85  Aligned_cols=112  Identities=10%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhh-------------ccccc-----CCCCchhHHHHHHhH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKF-------------NSRIH-----FPNENHVSLYRLQLT  111 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~l~  111 (202)
                      .+..++|+||+|+|||+++--||..+..   .+....++..+             ...+.     ...+....    ...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~----~~~   81 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE----SIR   81 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH----HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhh----HHH
Confidence            4556899999999999999999988654   32211111110             00000     00111110    001


Q ss_pred             HHHHHhhhhCCceEEEEecCCCCCh--hHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHH
Q psy1695         112 NWIISNVTACDRAIFIFDEVDKFPK--GLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIM  174 (202)
Q Consensus       112 ~~~~~~l~~~~~~viiiDEid~~~~--~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~  174 (202)
                      ............+++++|=+.+.+.  ...+.|..+.+...      -..+++++.++.+.+.+.
T Consensus        82 ~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~------~~~~llv~~a~~~~~~~~  140 (207)
T d1ls1a2          82 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALS  140 (207)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC------CSEEEEEEEGGGTHHHHH
T ss_pred             HHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcC------CceEEEEeccccchhHHH
Confidence            1111122333458999999998876  34444554443321      156777888877766554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.24  E-value=3.9e-07  Score=65.09  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++..++|+|+||+||||+|++||+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46677999999999999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5e-07  Score=65.63  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++..++|+|+||+||||+|+.||+.+..
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36778899999999999999999999755

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=5e-07  Score=63.39  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|+|||||||||+|+.||+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4788899999999999999999743

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.13  E-value=6.9e-07  Score=63.63  Aligned_cols=27  Identities=33%  Similarity=0.632  Sum_probs=24.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +|..++|+||||+||||+|+.||+.+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            556799999999999999999999863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.1e-06  Score=62.43  Aligned_cols=28  Identities=21%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..++|.||||+||||+|+.|++.+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5657889999999999999999999754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=7.9e-07  Score=63.64  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=23.0

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +..++|.|||||||||+|++||+.+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33689999999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.06  E-value=1.4e-06  Score=63.54  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=24.8

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+|..+++.||||+||||+|+.||+.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            478889999999999999999999985

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.1e-05  Score=64.72  Aligned_cols=27  Identities=11%  Similarity=0.257  Sum_probs=22.0

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +.+++|+||+..++......++..+..
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~ll~~~~~  287 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSRLIDALPD  287 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred             ccceeeehhhhccCHHHHHHHHHHhcC
Confidence            458999999999998877777777654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.05  E-value=1.2e-06  Score=62.21  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++|||||||||+|+.||+.+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            77999999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.04  E-value=1.2e-06  Score=63.77  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=24.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .|+.++|.||||+||||+|+.|++.+.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            577899999999999999999999964

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.01  E-value=1.3e-06  Score=61.79  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||||+||||+|+.|++.+.
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999853

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.9e-06  Score=61.52  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++++||||||||++++.+++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5899999999999999999999865

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.94  E-value=5.7e-06  Score=56.35  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=17.7

Q ss_pred             eEEEEecCCCCcHHHHHH-HHHHHh
Q psy1695          52 LAISLHGLPGTGKNYVTD-FIVSSI   75 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~-~la~~l   75 (202)
                      ...++.+|+|+|||..+- ++....
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHh
Confidence            367999999999997764 444443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.92  E-value=3.1e-06  Score=60.04  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.||||+||||+|+.|++.+..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            6889999999999999999999643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.5e-06  Score=61.29  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      |+.+++.||||+||||.|+.||+.+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            6678999999999999999999985

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.88  E-value=1.1e-05  Score=58.08  Aligned_cols=29  Identities=17%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..|+.+.+.||+|+||||+|+.|++.+..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46888889999999999999999998655

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.81  E-value=5.9e-06  Score=57.43  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||||+||||+|+.|++.
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999988765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.81  E-value=3.7e-06  Score=59.68  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +..++|.||||+||||+|+.+++.+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=5.4e-06  Score=58.87  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.|+|||||||+++.+|+.+.-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            567799999999999999999744

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=7.7e-06  Score=59.58  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||||+||||+|+.|++.+
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999999985

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.80  E-value=6e-06  Score=58.93  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.|+||+||||+|+.+|+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            567899999999999999999744

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.78  E-value=8.4e-06  Score=59.39  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=24.2

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +.+.+-++|.||||+||||+|+.||+.+
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3466678889999999999999999985

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.76  E-value=7.3e-06  Score=58.08  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++|.|+||+|||++++.||+.+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            678899999999999999999743

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=9.2e-06  Score=57.20  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=23.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++.|+|++|+|||||++.|++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999999866

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.71  E-value=1.2e-05  Score=58.31  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -++|.||||+||||.|+.||+.+.
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999999853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=4.3e-05  Score=59.82  Aligned_cols=45  Identities=13%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          32 SHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        32 ~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+......++.... .+.|..+.+.|++|+||||+|+.|+..|..
T Consensus        62 ~~~~~~~~~fl~~~~-~k~P~iIGIaG~sgSGKSTla~~L~~lL~~  106 (308)
T d1sq5a_          62 LRRQAVLEQFLGTNG-QRIPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             HHHHHHHHHHHTCC--CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccC-CCCCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence            333344444555443 678989999999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.71  E-value=1.3e-05  Score=59.28  Aligned_cols=29  Identities=24%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++..++|+|.||+|||++|+.|++.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~   50 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVR   50 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            37888999999999999999999988753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.70  E-value=1.1e-05  Score=58.76  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|..++|.||||+||||.|+.||+.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            44478999999999999999999984

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.69  E-value=5.1e-05  Score=51.78  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=16.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      ..++.+|+|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999998754443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=1e-05  Score=57.89  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -+++.||||+||||+|+.||+.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            368999999999999999999963

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=9.3e-06  Score=58.33  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .|..++++|+||+||||+|+.++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            5667999999999999999887654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.68  E-value=0.00017  Score=52.81  Aligned_cols=23  Identities=17%  Similarity=0.119  Sum_probs=19.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++.+|+|+|||.+|-.++..+.
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSC
T ss_pred             cEEEeCCCCCceehHHhHHHHhc
Confidence            46788999999999988887753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=1.2e-05  Score=57.76  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -++|.||||+||||+|+.|++.+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~   26 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGI   26 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            3688999999999999999999643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.63  E-value=1.6e-05  Score=56.55  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.|+||+||||+++.|++.+..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.63  E-value=1.5e-05  Score=57.37  Aligned_cols=24  Identities=46%  Similarity=0.577  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -++|.||||+||||+|+.||+.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367899999999999999999963

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.7e-05  Score=56.98  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -++|.||||+||||+|+.||+.+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            367889999999999999999853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.59  E-value=2.1e-05  Score=58.12  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++.+.+.||||+||||.|+.||+.+.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44567889999999999999999863

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.58  E-value=9.7e-05  Score=55.04  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..+++||||+|||+++..+|.....
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~~~   52 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENACA   52 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999998654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.55  E-value=0.00021  Score=54.63  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             HHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhhhcccccCCCCchhHHHHHHhHHH
Q psy1695          34 ICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHKFNSRIHFPNENHVSLYRLQLTNW  113 (202)
Q Consensus        34 l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (202)
                      +..++..++....  .+-..++|+||+++|||+++.+|.+.+..   .   ..   +.     .....+ . .       
T Consensus        89 f~~~l~~~L~~~~--~k~n~~~l~G~~~tGKS~f~~~i~~~lg~---~---~~---~~-----~~~~~f-~-l-------  143 (267)
T d1u0ja_          89 AASVFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHTVPF---Y---GC---VN-----WTNENF-P-F-------  143 (267)
T ss_dssp             HHHHHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHHSSC---E---EE---CC-----TTCSSC-T-T-------
T ss_pred             HHHHHHHHHcCCC--CccEEEEEEcCCCCCHHHHHHHHHHHhcc---h---hh---cc-----ccCCCc-c-c-------
Confidence            3345555553321  13337899999999999999999998622   1   00   00     000000 0 0       


Q ss_pred             HHHhhhhCCceEEEEecCCCCChhHHHHHHHhcccCcccc------cccCCceEEEEeeCc
Q psy1695         114 IISNVTACDRAIFIFDEVDKFPKGLLDVIIPFIDHHAVYN------QISFQNTIFLFLSNS  168 (202)
Q Consensus       114 ~~~~l~~~~~~viiiDEid~~~~~~~~~L~~~le~~~~~~------~~~~~~~~~Iltsn~  168 (202)
                          ..-....++++||...- ....+.+.++++...+.-      ...+..+.++++||.
T Consensus       144 ----~~l~~k~~~~~~e~~~~-~~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n  199 (267)
T d1u0ja_         144 ----NDCVDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT  199 (267)
T ss_dssp             ----GGGSSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred             ----cccCCCEEEEEeCCCcc-ccHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCC
Confidence                00112368899998654 445567777777544331      235555556666654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.1e-05  Score=56.36  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      -++|.||||+||||.|+.||+.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999985

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=8.8e-05  Score=57.36  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          29 LAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        29 ~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ..++.+...+..+....  .++|+.+-+.|++|+||||++..|...|..
T Consensus         7 ~~~~~~~~~~~~~~~~~--~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_           7 YTIEFLDKYIPEWFETG--NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             HHHHHHHHHHHHHHTTT--CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            34455555555554433  357888899999999999999999887644

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.8e-05  Score=57.21  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=24.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|+.+.+.||+|+||||+|+.|++.+..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            3778899999999999999999998644

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00011  Score=55.54  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++++...+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4889999999999999999987654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=8.7e-05  Score=57.08  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=37.8

Q ss_pred             hCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          23 HVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        23 ~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|++.-++.+.+.+...-..     ....+.++|+.|+|||++|+.+.+.
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~-----~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDL-----DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTS-----SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCC-----CceEEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999998888764322     2235889999999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=4.2e-05  Score=56.13  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||||+||+|.|+.||+.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            678889999999999999999963

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.45  E-value=3.4e-05  Score=55.08  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|.|++|+||||+++.|++.|..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.00053  Score=53.78  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=46.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhccccCcCccchhhh-hcccccCCC---------CchhHHHHHHhHHHHHHhhhhCC
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFKRYKDKGTSRFVHK-FNSRIHFPN---------ENHVSLYRLQLTNWIISNVTACD  122 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~~~~  122 (202)
                      .++++||+|+|||++.+++..++..   .   ..++.+ +..++....         ...+.     +...+...++.. 
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~---~---~rivtiEd~~El~l~~~~~~~~~~~~~~~~-----~~~ll~~~lR~~-  235 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK---E---ERIISIEDTEEIVFKHHKNYTQLFFGGNIT-----SADCLKSCLRMR-  235 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT---T---CCEEEEESSCCCCCSSCSSEEEEECBTTBC-----HHHHHHHHTTSC-
T ss_pred             CEEEEeeccccchHHHHHHhhhccc---c---cceeeccchhhhhcccccccceeccccchh-----HHHHHHHHhccC-
Confidence            5899999999999999999988543   1   111111 111111110         11111     133344455544 


Q ss_pred             ceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      .+.+++.|+--  +++.+ +++.+..|
T Consensus       236 pd~iivgEiR~--~ea~~-~l~a~~tG  259 (323)
T d1g6oa_         236 PDRIILGELRS--SEAYD-FYNVLCSG  259 (323)
T ss_dssp             CSEEEESCCCS--THHHH-HHHHHHTT
T ss_pred             CCcccCCccCc--hhHHH-HHHHHHhc
Confidence            46788999963  45665 45677775

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=0.00018  Score=54.68  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++.++..+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             EEEEECCCCChHHHHHHHHhcccCC
Confidence            5889999999999999999887544

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.00025  Score=49.87  Aligned_cols=50  Identities=20%  Similarity=0.246  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+...+.+.+.+.+.... .+.+..++|.|+=|+|||++++.+++.+..
T Consensus        10 ~e~~t~~lg~~la~~l~~~~-~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          10 DEFSMLRFGKKFAEILLKLH-TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC-CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHhcc-CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45566666666666553211 123446889999999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.28  E-value=4.5e-05  Score=55.23  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=26.4

Q ss_pred             CCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          48 NTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        48 ~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++|+.+.+.|+.|+||||+++.|++.+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            458988999999999999999999988643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.26  E-value=0.00021  Score=54.32  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++.++..+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~p   70 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYDV   70 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCCc
Confidence            5889999999999999999876543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.005  Score=45.76  Aligned_cols=28  Identities=21%  Similarity=0.045  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +|...|++|.+|+|||.++-..+.....
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            5667899999999999999777666554

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.00069  Score=51.59  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..-||.|.+|+|||.+|-..+.....
T Consensus       103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~  130 (264)
T d1gm5a3         103 KPMNRLLQGDVGSGKTVVAQLAILDNYE  130 (264)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CcceeeeeccccccccHHHHHHHHHHHh
Confidence            5656799999999999999777766554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.0001  Score=53.34  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++|.||+|+|||++++.|++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.20  E-value=0.0028  Score=50.98  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||+|+||||+..++.+.+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcC
Confidence            3899999999999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00011  Score=52.96  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      ++|+||+|+|||++++.|++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5899999999999999998874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0013  Score=49.03  Aligned_cols=23  Identities=13%  Similarity=0.011  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||...|||++.+.++-..
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHHHHH
Confidence            58999999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0008  Score=51.19  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...|+||||+|||+++..++.....
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~   80 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQR   80 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHc
Confidence            5899999999999999888887644

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00016  Score=51.71  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++|.||+|+|||++++.+.+..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999998873

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00021  Score=50.22  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++|++|+||||++..++.+|..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4679999999999999999999876

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00023  Score=51.17  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .|+.+-++|++|+|||++|+.+.+.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5888889999999999999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0006  Score=53.56  Aligned_cols=61  Identities=16%  Similarity=0.362  Sum_probs=40.4

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHh-----------H--hccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          16 LEEQLKQHVHGQELAISHICGALKNH-----------F--QNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        16 l~~~L~~~liGq~~a~~~l~~~l~~~-----------~--~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++.+..-.-|...++..+...+...           +  ..+. .++...+-++||||+|||++...+++.+..
T Consensus         7 ~~~~~~~~~~g~~~~la~~it~vE~~~~~~~~~~~~ll~~~~~~-~~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1           7 LAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPY-CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGG-CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhc-cCCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            44444445567776666666555420           1  0111 235667999999999999999999988765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.97  E-value=0.00085  Score=45.98  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999998765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.95  E-value=0.0018  Score=47.16  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++|+||+|||++|..++..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999766543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.94  E-value=0.00095  Score=52.30  Aligned_cols=28  Identities=29%  Similarity=0.552  Sum_probs=24.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +...+-++||||+|||++...+.+.+..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            5667999999999999999999987644

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.93  E-value=0.0032  Score=47.82  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...++||+|+|||++|..++.....
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk   83 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK   83 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh
Confidence            5889999999999999888887544

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.92  E-value=0.0027  Score=46.96  Aligned_cols=23  Identities=13%  Similarity=0.036  Sum_probs=20.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++++||...|||++.+.++-..
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHHH
Confidence            58999999999999999888764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00033  Score=51.39  Aligned_cols=22  Identities=14%  Similarity=0.282  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|+||+|+|||++.+.|.+.
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999998877

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00034  Score=51.39  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.2

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++.-+.|.|+.|+||||+++.|++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4445788899999999999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0032  Score=43.29  Aligned_cols=22  Identities=18%  Similarity=0.440  Sum_probs=18.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+++.|+||+|||+|..++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.82  E-value=0.00036  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -++|.|++|+|||+|.+.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999987553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00041  Score=49.65  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|.||+|+||+++++.|.+.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            3678999999999999998876

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.80  E-value=0.0072  Score=42.05  Aligned_cols=51  Identities=12%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             HHhhhhCCceEEEEecC------CCCChhHHHHHHHhcccCcccccccCCceEEEEeeCcChHHHHH
Q psy1695         115 ISNVTACDRAIFIFDEV------DKFPKGLLDVIIPFIDHHAVYNQISFQNTIFLFLSNSGGTEIMN  175 (202)
Q Consensus       115 ~~~l~~~~~~viiiDEi------d~~~~~~~~~L~~~le~~~~~~~~~~~~~~~Iltsn~~~~~i~~  175 (202)
                      .+.+....+++||+||+      +.++.   +.+..+++..+       .+.-+|+|-...++.+.+
T Consensus        87 ~~~~~~~~~dllILDEi~~Ai~~gli~~---~~v~~ll~~rp-------~~~evVlTGr~~p~~L~e  143 (157)
T d1g5ta_          87 KRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARP-------GHQTVIITGRGCHRDILD  143 (157)
T ss_dssp             HHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSC-------TTCEEEEECSSCCHHHHH
T ss_pred             HHHhhcCccCEEeHHHHHHHHHcCCCCH---HHHHHHHHhCC-------CCCEEEEECCCCCHHHHH
Confidence            34456667899999999      44443   45556666655       788899999887776544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00047  Score=49.52  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++||||+|||+++..+|.....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999877543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.67  E-value=0.00061  Score=50.28  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++++.||+|+||||+...+.+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            678999999999999999988753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00043  Score=50.98  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++++||||+|||+++..++..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999888754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.57  E-value=0.00074  Score=50.07  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||||+|||+++..++....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            589999999999999998887653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0009  Score=48.71  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -+.|.|+.|+||||+++.|++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00092  Score=49.07  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++.-+.|.|+.|+||||+++.|++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4556889999999999999999999754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0011  Score=49.05  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .++++||||+|||++|..++....
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999987643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.41  E-value=0.0014  Score=45.08  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.+-++|+|++|||||+|.+.+...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC
Confidence            4456899999999999999988664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.41  E-value=0.0012  Score=47.02  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.|++|+|||++|..+.+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            37999999999999999887664

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.37  E-value=0.0014  Score=45.85  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +..=++|.|++|+|||+|...+...
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4545899999999999999887543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.0012  Score=47.59  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -+.|.|+.|+||||+++.|++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999998755

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0011  Score=49.03  Aligned_cols=27  Identities=15%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |.-+.|.|+.|+||||+++.|++.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            456889999999999999999999754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0019  Score=47.90  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      ..+|.|++|||||+|..+|.-
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHST
T ss_pred             eEEEECCCCCCHHHHHHhhcc
Confidence            578999999999999998843

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.31  E-value=0.013  Score=40.89  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.|.|.+|+|||++.+++...
T Consensus         8 I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           8 VAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999988653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.30  E-value=0.0014  Score=48.16  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++++|+||+|||+++..+|..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999987654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0011  Score=49.50  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~p   52 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLETI   52 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            5789999999999999999887644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.28  E-value=0.00087  Score=49.96  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++....+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~p   57 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDKP   57 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCcchhhHhccCCCCC
Confidence            5889999999999999999887544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.26  E-value=0.0011  Score=49.67  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+++.++..+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            5789999999999999999887544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0013  Score=44.99  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++|.|+||||||+|...+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999988764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.25  E-value=0.0012  Score=49.51  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            3568899999999999999998654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.24  E-value=0.0012  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.||+|+|||++|..+.+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            37999999999999999887654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.23  E-value=0.00073  Score=52.05  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++|++|+|||++++++.+.+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            6899999999999999999998654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.22  E-value=0.00074  Score=49.23  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            4789999999999999999987654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.0072  Score=45.84  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ...|+||+|+|||++|..++.....
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q~   86 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQA   86 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHhc
Confidence            5889999999999999777766443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.17  E-value=0.0018  Score=45.25  Aligned_cols=25  Identities=28%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             CceE-EEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALA-ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~-~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .|+. +++.|++|||||++...+...
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            4666 899999999999999887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.14  E-value=0.0011  Score=49.42  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC
Confidence            5889999999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.001  Score=49.83  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=21.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+++.++-.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~~p   57 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLERP   57 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCccc
Confidence            5789999999999999999887544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=45.74  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+++..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            688999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.12  E-value=0.0015  Score=48.92  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++..+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            5789999999999999999988654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.11  E-value=0.002  Score=45.61  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++|.|++|+|||++|-.+.+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            37999999999999999777665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.09  E-value=0.0066  Score=46.01  Aligned_cols=16  Identities=19%  Similarity=0.162  Sum_probs=13.4

Q ss_pred             ceEEEEecCCCCChhH
Q psy1695         123 RAIFIFDEVDKFPKGL  138 (202)
Q Consensus       123 ~~viiiDEid~~~~~~  138 (202)
                      .+++|+||++.+....
T Consensus       101 ~~~vViDE~H~~~~~~  116 (305)
T d2bmfa2         101 YNLIIMDEAHFTDPAS  116 (305)
T ss_dssp             CSEEEEESTTCCSHHH
T ss_pred             eeEEEeeeeeecchhh
Confidence            4889999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0019  Score=44.89  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+++..+...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887754

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.04  E-value=0.012  Score=44.79  Aligned_cols=24  Identities=8%  Similarity=0.192  Sum_probs=19.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .++.-|+|+|||.++.++++.+..
T Consensus       131 ~il~~pTGsGKT~i~~~i~~~~~~  154 (282)
T d1rifa_         131 RILNLPTSAGRSLIQALLARYYLE  154 (282)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ceeEEEcccCccHHHHHHHHHhhh
Confidence            466779999999999888876544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.04  E-value=0.0019  Score=49.14  Aligned_cols=28  Identities=7%  Similarity=0.179  Sum_probs=23.0

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhcccC
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDHH  149 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~~  149 (202)
                      ++++|++||++.+++.....+..+...+
T Consensus       206 ~~~~i~vDE~QD~~~~~~~~l~~~~~~~  233 (306)
T d1uaaa1         206 KIRYLLVDEYQDTNTSQYELVKLLVGSR  233 (306)
T ss_dssp             TCSEEEESCGGGCBHHHHHHHHHHHTTT
T ss_pred             HhhHHHHHHHHHhhHHHHhhhhhcccCC
Confidence            5689999999999998888877776553

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.00064  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      -+.|.|+.|+||||+++.|++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999999999999998643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.002  Score=45.04  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=19.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0021  Score=44.78  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      =+++.|++|||||++...+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999888764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0025  Score=44.66  Aligned_cols=26  Identities=27%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CCceE-EEEecCCCCcHHHHHHHHHHH
Q psy1695          49 TKALA-ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        49 ~~pl~-~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.|+- +++.|++|||||++...+...
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34553 899999999999999887664

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.002  Score=45.66  Aligned_cols=20  Identities=20%  Similarity=0.139  Sum_probs=17.9

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      +++.|++|||||+++..+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.94  E-value=0.0027  Score=44.32  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+-+++.|.+|+|||++...+...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345899999999999999888654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0023  Score=48.17  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ..+++|++|+|||+++..+|..+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.94  E-value=0.0025  Score=44.60  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+.+-+++.|++|+|||++...+..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3555699999999999999987743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.90  E-value=0.0012  Score=49.60  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+.+.++....+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcCC
Confidence            5889999999999999999987544

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.90  E-value=0.0017  Score=48.65  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||+++.++..+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            4789999999999999999887654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0017  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.++||+|+||||+++.+...+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC
Confidence            5889999999999999999887544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0024  Score=44.86  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -+++.|++|||||+++..+...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999888654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=44.28  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ++|.|.+|||||+++..+...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.85  E-value=0.0025  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -++|.|++|+|||++...+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3788999999999999988654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0026  Score=44.44  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+++..+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.003  Score=45.26  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|.|+||+|||+|..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.83  E-value=0.0021  Score=48.66  Aligned_cols=24  Identities=29%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      .+.+.||+|+|||+++++++-.+.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc
Confidence            578999999999999999987643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0035  Score=43.90  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      =+++.|++|||||+|...+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999887654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0025  Score=44.59  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++.+.+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0022  Score=49.17  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.+.||+|+||||++++|+..+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCcC
Confidence            4789999999999999999887654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0029  Score=44.11  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999888764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0028  Score=44.29  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|.+|||||+|.+.+...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0031  Score=44.04  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=18.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.0032  Score=43.53  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      =+++.|++|||||++...+...
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.003  Score=43.86  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999888764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.0032  Score=43.94  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+.+.|++|+|||++.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.66  E-value=0.0025  Score=44.61  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +.+-+++.|++|+|||++.+.+..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            455689999999999999988754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0033  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=17.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999877653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0033  Score=44.00  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+++..+...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0037  Score=44.19  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|.+|||||+++..+...
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999888654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0034  Score=43.44  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|.+|||||++++.+...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578899999999999988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0034  Score=43.62  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         7 v~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999988654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.59  E-value=0.0098  Score=44.60  Aligned_cols=24  Identities=29%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .++.++|.|.||+|||++..+|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            567899999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0034  Score=43.56  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|+|||++...+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.0029  Score=44.49  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++|.|+||+|||+|..+|...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0038  Score=43.38  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      =+++.|.+|||||++.+.+...-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999887653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0035  Score=43.99  Aligned_cols=22  Identities=14%  Similarity=0.080  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|++|||||++...+...-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5788999999999998887653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0034  Score=44.52  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=19.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|.+|||||++...+...-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            8999999999999998887653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0039  Score=43.43  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++++.+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0041  Score=43.21  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      =+++.|.+|||||++.+.+...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0039  Score=45.25  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.++|++|+|||++|+.+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            4679999999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0039  Score=43.44  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+++..+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999887553

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0044  Score=44.60  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+++.|++|+|||++...+...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999888764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.50  E-value=0.0033  Score=44.84  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+.+.|+||+|||++..+|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            488999999999999999963

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.50  E-value=0.004  Score=45.05  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+-++|++|+|||++|+.+.+
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0042  Score=43.50  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=17.8

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      ++|.|++|||||+|+..+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.45  E-value=0.0056  Score=43.03  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la   72 (202)
                      +.+-+++.|++|+|||++.+.+.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45569999999999999998764

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.42  E-value=0.17  Score=36.11  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=17.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .++...|+|+|||..+....-.
T Consensus        44 d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          44 NIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHH
T ss_pred             Ceeeechhcccccceeeccccc
Confidence            5788999999999987655544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0048  Score=42.89  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||+|...+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999998877654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.37  E-value=0.0038  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||+|+||||+.++++-.+.+
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5789999999999999999887644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0048  Score=43.54  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      =+++.|.+|||||++...+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999888765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.36  E-value=0.022  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la   72 (202)
                      .|+.+.+.|.||+|||++..+|-
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            57789999999999999999885

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0046  Score=43.66  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++|.|++|||||++...+...-+
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f   27 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCF   27 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            68999999999999988876533

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0051  Score=43.14  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.0049  Score=44.01  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0085  Score=41.68  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999888764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.18  E-value=0.0057  Score=46.84  Aligned_cols=26  Identities=8%  Similarity=0.124  Sum_probs=19.9

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      +++|++||++.+++..+..+..+...
T Consensus       217 ~~~i~iDE~QD~s~~q~~~~~~l~~~  242 (318)
T d1pjra1         217 FQYIHIDEYQDTNRAQYTLVKKLAER  242 (318)
T ss_dssp             CSEEEESSGGGCCHHHHHHHHHHHTT
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999766666655444

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0055  Score=43.56  Aligned_cols=22  Identities=14%  Similarity=0.040  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|++|||||++...+...-
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999998876653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.16  E-value=0.0063  Score=45.74  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+++.|+||+|||+++..++..+
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhh
Confidence            58899999999999999988654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0018  Score=45.74  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+|+||.|+|||++..+|.-.+..
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            578999999999999999988765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.13  E-value=0.005  Score=46.35  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+.|.||+|+|||++++.++-.+.+
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCcC
Confidence            5789999999999999999887544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.009  Score=39.59  Aligned_cols=29  Identities=10%  Similarity=0.209  Sum_probs=25.8

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +++..++|.|-+|+||+++|+++...+..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999888765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0047  Score=45.83  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.+.||+|+||||+.+.++..
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999874

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0086  Score=45.19  Aligned_cols=28  Identities=14%  Similarity=0.140  Sum_probs=24.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .|..++|.|.=||||||+|..+|..+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~   34 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAE   34 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHH
Confidence            5667889999999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.06  E-value=0.0071  Score=44.52  Aligned_cols=22  Identities=41%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.|+|+.|+||||+|+.+++.
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.0057  Score=45.58  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+-+.||+|+||||+.+.++..+.+
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5779999999999999999988655

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.03  E-value=0.035  Score=37.55  Aligned_cols=22  Identities=14%  Similarity=-0.060  Sum_probs=16.8

Q ss_pred             EEEecCCCCcHHH-HHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNY-VTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~-la~~la~~l   75 (202)
                      -+++||=.+|||+ |.+.+.++-
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEccccCHHHHHHHHHHHHHH
Confidence            3678999999999 666665553

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0065  Score=42.34  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.|.|.||+|||+|..+|...
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.004  Score=43.56  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=8.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|.+|||||++...+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999877654

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.1  Score=37.94  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             eEEEEecCCCCCh-hHHHHHHHhccc
Q psy1695         124 AIFIFDEVDKFPK-GLLDVIIPFIDH  148 (202)
Q Consensus       124 ~viiiDEid~~~~-~~~~~L~~~le~  148 (202)
                      ..+|+||+|++-. +..+.+..+++.
T Consensus       161 ~~lVlDEaD~ll~~~f~~~i~~I~~~  186 (222)
T d2j0sa1         161 KMLVLDEADEMLNKGFKEQIYDVYRY  186 (222)
T ss_dssp             CEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred             eeeeecchhHhhhcCcHHHHHHHHHh
Confidence            7899999987754 355556666554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0041  Score=43.44  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=16.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|||||++...+...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999998876544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.90  E-value=0.0058  Score=47.85  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=23.3

Q ss_pred             ceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++-+.|-|+-|+||||+++.+++.+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhcc
Confidence            345889999999999999999998644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.88  E-value=0.003  Score=46.90  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=18.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..+|.|++|+|||+|..+|.-.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999888543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.87  E-value=0.011  Score=41.56  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .++-+.+.|.+|+|||++..++..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            445688999999999999988864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.72  E-value=0.0062  Score=42.89  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=17.5

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      +.|.|+||+|||+|..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999988743

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.11  Score=37.03  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=17.2

Q ss_pred             eEEEEecCCCCChh-HHHHHHHhccc
Q psy1695         124 AIFIFDEVDKFPKG-LLDVIIPFIDH  148 (202)
Q Consensus       124 ~viiiDEid~~~~~-~~~~L~~~le~  148 (202)
                      ..+|+||+|++-.. ....+..+++.
T Consensus       145 ~~lV~DEaD~l~~~~f~~~v~~I~~~  170 (206)
T d1s2ma1         145 SLFIMDEADKMLSRDFKTIIEQILSF  170 (206)
T ss_dssp             CEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred             eEEEeechhhhhhhhhHHHHHHHHHh
Confidence            67899999988653 45555555554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0088  Score=42.36  Aligned_cols=18  Identities=28%  Similarity=0.307  Sum_probs=17.2

Q ss_pred             EEEecCCCCcHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFI   71 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~l   71 (202)
                      +++.|.+|||||++...+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.01  Score=42.53  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=21.9

Q ss_pred             EEEEecC-CCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGL-PGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp-~GtGKT~la~~la~~l~~   77 (202)
                      -++++|- +|||||+++-.||..|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~   28 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKA   28 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHH
Confidence            3678898 599999999999999876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0065  Score=42.36  Aligned_cols=22  Identities=14%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             ceEEEEecCCCCcHHHHHHHHH
Q psy1695          51 ALAISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        51 pl~~ll~Gp~GtGKT~la~~la   72 (202)
                      +.-+.|.|+|++|||+|.++|.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3458999999999999998874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.51  E-value=0.007  Score=42.44  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=17.7

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      +.|.|.||+|||++..+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67889999999999988854

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.022  Score=39.90  Aligned_cols=21  Identities=14%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|++|+|||++...+...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999887665

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=94.24  E-value=0.059  Score=40.83  Aligned_cols=46  Identities=11%  Similarity=0.148  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |.++++.+.+.+.....     ....+.+|.=+.|+|||..|-++...+..
T Consensus        60 Q~~gv~~l~~~~~~~~~-----~~~~g~iLaDemGlGKT~qaia~l~~l~~  105 (298)
T d1z3ix2          60 QREGVKFLWDCVTGRRI-----ENSYGCIMADEMGLGKTLQCITLIWTLLK  105 (298)
T ss_dssp             HHHHHHHHHHHHTTSSS-----TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhh-----ccCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            56666655544432211     13336788889999999877666555443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.22  E-value=0.0041  Score=42.62  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.|.|.||+|||++..++...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999765

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.13  E-value=0.031  Score=40.90  Aligned_cols=54  Identities=15%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             hHHHHHHHHhhCCChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          13 VRVLEEQLKQHVHGQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        13 ~~~l~~~L~~~liGq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      +..+++.+. ..+|+.-.++.  .++...+.+.       .+++.+|+|+|||.++...+..+.
T Consensus        30 ~~~~~~~~~-~~~~~p~~~Q~--~~i~~~l~g~-------~~~i~apTGsGKT~~~~~~~~~~~   83 (237)
T d1gkub1          30 LKEFVEFFR-KCVGEPRAIQK--MWAKRILRKE-------SFAATAPTGVGKTSFGLAMSLFLA   83 (237)
T ss_dssp             HHHHHHHHH-TTTCSCCHHHH--HHHHHHHTTC-------CEECCCCBTSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hccCCCCHHHH--HHHHHHHCCC-------CEEEEecCCChHHHHHHHHHHHHH
Confidence            344555443 45665544333  3444444432       478899999999987766655543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.11  E-value=0.017  Score=40.97  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=17.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .++.+|+|+|||.++..++...
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHH
Confidence            5788999999999877776654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.06  E-value=0.014  Score=42.61  Aligned_cols=20  Identities=20%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      +++.|++|+|||++.+.+..
T Consensus         9 illlG~~~vGKTsll~~~~~   28 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            79999999999999988753

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.04  E-value=0.14  Score=36.95  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.+|.=+.|+|||..|-+++..+..
T Consensus        33 g~iLaDe~GlGKT~~~i~~~~~~~~   57 (230)
T d1z63a1          33 GICLADDMGLGKTLQTIAVFSDAKK   57 (230)
T ss_dssp             CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCChHHHHHHhhhhhhh
Confidence            5677779999999999888877654

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.14  Score=36.59  Aligned_cols=16  Identities=31%  Similarity=0.262  Sum_probs=13.5

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .+++..|+|+|||...
T Consensus        42 dvl~~a~TGsGKTlay   57 (206)
T d1veca_          42 DILARAKNGTGKSGAY   57 (206)
T ss_dssp             CEEEECCSSSTTHHHH
T ss_pred             CEEeeccCcccccccc
Confidence            4889999999999644

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.92  E-value=0.016  Score=41.48  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=14.8

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~   69 (202)
                      .+++.+|+|+|||++|.
T Consensus        42 ~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CEEEECSSHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHH
Confidence            47899999999999874

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.017  Score=40.67  Aligned_cols=21  Identities=19%  Similarity=0.166  Sum_probs=18.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|..|||||++...+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988665

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.018  Score=45.89  Aligned_cols=25  Identities=20%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      |+++.|++|+|||+++..+...+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~   76 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLL   76 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHh
Confidence            6999999999999998776665543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.54  E-value=0.013  Score=45.77  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.|-|+-|+||||+++.+++.+..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            789999999999999999998754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.41  E-value=0.021  Score=39.86  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=18.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +++.|..|||||++.+.+...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999887554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.31  E-value=0.016  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -+.|-|+-|+|||++++.+++.+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            378899999999999999988754

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.28  E-value=0.051  Score=46.57  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.-++++.|.+|+|||+.++.+-++|..
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL~~  151 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYLAS  151 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            3448999999999999999999888743

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.27  E-value=0.051  Score=46.72  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++-++++.|++|+|||+.++.+-++|.
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            455899999999999999999988874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.023  Score=41.58  Aligned_cols=22  Identities=27%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..+++|.-|+||||+.+.+.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4899999999999999888775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=0.024  Score=44.67  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .-+++||.|+|||++..||.-.|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999997654

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.027  Score=40.19  Aligned_cols=20  Identities=15%  Similarity=0.074  Sum_probs=15.8

Q ss_pred             EEEEecCCCCcHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIV   72 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la   72 (202)
                      .+++.-|+|+|||.++....
T Consensus        42 ~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhh
Confidence            46889999999998875443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.19  E-value=0.045  Score=46.69  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=23.5

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++-++++.|.+|+|||+.++.+-++|.
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            344799999999999999999988874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.015  Score=44.00  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .-+|+||.|+|||++..||.-.+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            46899999999999999996654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.14  E-value=0.055  Score=46.35  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++-++++.|.+|+|||+.++.+-++|.
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344899999999999999999999874

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.13  E-value=0.051  Score=47.15  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      ++-++++.|.+|+|||+.++.+-++|..
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL~~  149 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYFAT  149 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4448999999999999999999988743

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=93.06  E-value=0.052  Score=42.21  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      |+++.+.+...+...+.+.+     ..++-+|.+|+|||+..
T Consensus        64 q~~vy~~v~~~v~~~l~G~n-----~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          64 NVDVFKEVGQLVQSSLDGYN-----VCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHHHHHHHHHHHGGGGGTCC-----EEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHhhhhhcchhcccc-----cceeeeeccCCcccccc
Confidence            66666666554444554432     25888999999999976

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.048  Score=40.61  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+++.|.=|||||++|-.||..+..
T Consensus        22 iii~sGKGGVGKTT~a~nLA~~lA~   46 (279)
T d1ihua2          22 LIMLMGKGGVGKTTMAAAIAVRLAD   46 (279)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6889999999999999999998766

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.83  E-value=0.18  Score=37.96  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|++|+|||+++..+++..
T Consensus        71 ~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          71 IGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            7889999999999999998874

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.71  E-value=0.062  Score=46.56  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.7

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      ++-++++.|.+|+|||+.++.+-++|.
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344799999999999999999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.68  E-value=0.034  Score=42.40  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      -.++.|++|||||+++..+++...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHh
Confidence            378999999999999999998754

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=92.66  E-value=0.038  Score=43.43  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=25.5

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      .|+++.+.+...+...+.+.+     ..++-+|++|+|||+..
T Consensus        55 ~q~~vy~~v~~lv~~~l~G~n-----~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          55 TQDDVFEDTKYLVQSAVDGYN-----VCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             CHHHHHHTTTHHHHHHHTTCE-----EEEEEECSTTSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCc-----eeeeccccCCCCccccc
Confidence            355666655554555554432     25888999999999985

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.56  E-value=0.022  Score=44.02  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=15.0

Q ss_pred             EEEEecCCCCcHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTD   69 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~   69 (202)
                      +.+|.|.+|||||||+.
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            57999999999999863

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.35  E-value=0.044  Score=43.12  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             ChHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          26 GQELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        26 Gq~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      .|+++.+.+...+...+.+.+     ..++-+|++|+|||+..
T Consensus       105 ~Q~~Vy~~v~plv~~vl~G~n-----~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         105 SQSDIFEMVSPLIQSALDGYN-----ICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             CHHHHHTTTHHHHHHHHTTCE-----EEEEEECSTTSSHHHHH
T ss_pred             CccchHHHHHHHHHHHhcccc-----eeEEeeccCCCccceEe
Confidence            366666665555555554432     25889999999999875

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.026  Score=43.41  Aligned_cols=16  Identities=38%  Similarity=0.667  Sum_probs=14.6

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      +-+|.|-+|||||+|+
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            5689999999999987

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.16  E-value=0.4  Score=34.01  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      +.+.+.|-+++|||+|+.+|...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHH
Confidence            45889999999999999998654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.05  E-value=0.25  Score=36.89  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .+.+.|..|+|||+|+.++...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4678899999999999999655

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.63  E-value=0.45  Score=33.60  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=21.5

Q ss_pred             Cce-EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          50 KAL-AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        50 ~pl-~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +|+ .+.+.|-.+.|||+|+.+|...+
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHH
Confidence            453 58899999999999999987653

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.11  Score=39.98  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             ChHHHHHHHHHHH-HHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          26 GQELAISHICGAL-KNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        26 Gq~~a~~~l~~~l-~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      .|+++.+.+...+ ...+.+.+     ..++-+|++|+|||+..
T Consensus        55 ~q~~vf~~~~~~lv~~~l~G~n-----~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          55 SQEQVYNDCAKKIVKDVLEGYN-----GTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CHHHHHHHHTHHHHHHHHTTCC-----EEEEEECSTTSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC-----cceeeecccCCCCceec
Confidence            3566666554433 34454432     35889999999999986

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.47  E-value=0.046  Score=42.16  Aligned_cols=16  Identities=38%  Similarity=0.671  Sum_probs=14.7

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      +.+|.|-+|||||||+
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            5689999999999998

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.04  E-value=0.25  Score=36.79  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=22.2

Q ss_pred             CCceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          49 TKALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        49 ~~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      ..++.++++|-|.||||+++.++...
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            35667999999999999999998764

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=90.93  E-value=0.14  Score=39.76  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             hHHHHHHHHH-HHHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          27 QELAISHICG-ALKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        27 q~~a~~~l~~-~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      |+++.+.+.. .+...+.+.+     ..++-+|++|+|||++.
T Consensus        60 q~~vy~~~~~plv~~~l~G~n-----~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          60 QSDIFDFSIKPTVDDILNGYN-----GTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             HHHHHHHHTHHHHHHHTTTCC-----EEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCc-----eeEEecccCCCCcceee
Confidence            5666555433 3334444322     25889999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.99  E-value=0.098  Score=36.33  Aligned_cols=22  Identities=14%  Similarity=0.389  Sum_probs=19.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy1695          52 LAISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        52 l~~ll~Gp~GtGKT~la~~la~   73 (202)
                      +.+-+.|.|++|||+|..+|..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            3588999999999999999864

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=89.47  E-value=0.24  Score=38.25  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHH-HHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          27 QELAISHICGA-LKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        27 q~~a~~~l~~~-l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      |+++.+.+... +...+.+.     ...++-+|.+|+|||+..
T Consensus        61 q~~vy~~~~~~lv~~~l~G~-----n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          61 QIDVYRSVVCPILDEVIMGY-----NCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-----EEEEEEEECTTSSHHHHH
T ss_pred             HHHHHHHHHHHhHHHHhccC-----CceEEeeeeccccceEEe
Confidence            55665554333 34444432     235889999999999875

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=89.28  E-value=0.27  Score=39.10  Aligned_cols=41  Identities=24%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |..|++.+.+.+....   .      ..++.|-+|+|||+++..+++...
T Consensus        16 QP~aI~~l~~~l~~g~---~------~q~l~GltGS~ka~~iA~l~~~~~   56 (413)
T d1t5la1          16 QPQAIAKLVDGLRRGV---K------HQTLLGATGTGKTFTISNVIAQVN   56 (413)
T ss_dssp             HHHHHHHHHHHHHHTC---S------EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCC---C------cEEEeCCCCcHHHHHHHHHHHHhC
Confidence            7788888877776431   1      467899999999999988888754

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=89.27  E-value=0.24  Score=38.37  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=25.4

Q ss_pred             ChHHHHHHHHHHHH-HhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          26 GQELAISHICGALK-NHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        26 Gq~~a~~~l~~~l~-~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      -|+++.+.+..-+- ..+.+.     ...++-+|.+|+|||+..
T Consensus        66 sQ~~vy~~~~~plv~~~l~G~-----n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          66 SQKQVYRDIGEEMLQHAFEGY-----NVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTC-----CEEEEEECSTTSSHHHHH
T ss_pred             cHHHHHHHhhHHHHHHHHhcc-----CceeeeeccCCCCCceee
Confidence            36666666544443 344432     235889999999999987

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.18  E-value=0.2  Score=38.47  Aligned_cols=16  Identities=31%  Similarity=0.511  Sum_probs=14.4

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .++-+|.+|+|||+..
T Consensus        87 ~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          87 SCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEeeeccccccceee
Confidence            5888999999999986

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=89.05  E-value=0.18  Score=39.40  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=23.8

Q ss_pred             hHHHHHHHHH-HHHHhHhccCCCCCceEEEEecCCCCcHHHHH
Q psy1695          27 QELAISHICG-ALKNHFQNRYHNTKALAISLHGLPGTGKNYVT   68 (202)
Q Consensus        27 q~~a~~~l~~-~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la   68 (202)
                      |+++.+.+.. .+...+.+.+     ..++-+|.+|+|||+..
T Consensus        94 Q~~Vy~~~~~plv~~~l~G~n-----~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_          94 NEVVYRFTARPLVQTIFEGGK-----ATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCE-----EEEEEEESTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccC-----ceEEeeccCCCCCceee
Confidence            5666655433 3344444432     25888899999999876

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.98  E-value=0.78  Score=34.43  Aligned_cols=22  Identities=18%  Similarity=0.040  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHh
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      +++.|++|+|||+++..++...
T Consensus        71 ~~If~~~g~GKt~ll~~~~~~~   92 (285)
T d2jdia3          71 ELIIGDRQTGKTSIAIDTIINQ   92 (285)
T ss_dssp             CEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEeecCCCCChHHHHHHHHHhH
Confidence            6788999999999988777663

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.61  E-value=0.14  Score=37.78  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++|.=|||||++|--+|..|..
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~   27 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHA   27 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHh
Confidence            557899999999999999999876

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.55  E-value=0.33  Score=34.26  Aligned_cols=16  Identities=25%  Similarity=0.287  Sum_probs=13.7

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .+++..|+|+|||...
T Consensus        40 dvii~a~TGSGKTlay   55 (209)
T d1q0ua_          40 SMVGQSQTGTGKTHAY   55 (209)
T ss_dssp             CEEEECCSSHHHHHHH
T ss_pred             CeEeecccccccceee
Confidence            4899999999999743

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.25  E-value=0.25  Score=35.15  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      .+..|.-|+|||++|..+|..+..
T Consensus         5 av~s~KGGvGKTtia~nlA~~la~   28 (232)
T d1hyqa_           5 TVASGKGGTGKTTITANLGVALAQ   28 (232)
T ss_dssp             EEEESSSCSCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCChHHHHHHHHHHHHHh
Confidence            345589999999999999999765

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.93  E-value=0.41  Score=32.06  Aligned_cols=27  Identities=19%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             CceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         122 DRAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       122 ~~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      ..++|+|||++-++......+..+.+.
T Consensus        80 ~~dvI~IDE~QFf~d~~~~~~~~l~~~  106 (141)
T d1xx6a1          80 DTEVIAIDEVQFFDDEIVEIVNKIAES  106 (141)
T ss_dssp             TCSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred             cccEEEEeehhhccccHHHHHHhheeC
Confidence            358999999999987666666665444

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.80  E-value=0.34  Score=34.84  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             CceEEEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALAISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .| .+.+.|.+++|||+|..+|...
T Consensus         5 ~p-~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SP-IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CC-EEEEEeCCCccHHHHHHHHHhh
Confidence            35 3778899999999999988665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.67  E-value=0.32  Score=34.61  Aligned_cols=24  Identities=38%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             EEEe-cCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLH-GLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~-Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++ +.-|||||++|..+|..+..
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la~   29 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALGD   29 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHh
Confidence            4444 78999999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.26  Score=36.96  Aligned_cols=25  Identities=24%  Similarity=0.543  Sum_probs=21.0

Q ss_pred             CceE-EEEecCCCCcHHHHHHHHHHH
Q psy1695          50 KALA-ISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        50 ~pl~-~ll~Gp~GtGKT~la~~la~~   74 (202)
                      .|++ +.+.||.++|||++...+...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            5664 779999999999999888654

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.76  E-value=0.78  Score=32.59  Aligned_cols=16  Identities=25%  Similarity=0.277  Sum_probs=14.0

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .++..+|+|+|||...
T Consensus        49 dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          49 DVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             CEEEECCTTSSHHHHH
T ss_pred             CEEeecccccchhhhh
Confidence            4899999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.73  E-value=0.34  Score=36.17  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSS   74 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~   74 (202)
                      -++++|..++|||++..+|...
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Confidence            3789999999999999999764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.25  E-value=0.36  Score=36.20  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHh
Q psy1695          53 AISLHGLPGTGKNYVTDFIVSSI   75 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la~~la~~l   75 (202)
                      .+.+.|..|+|||+|+.++....
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhc
Confidence            57899999999999999997653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.11  E-value=0.3  Score=36.36  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHhhc
Q psy1695          54 ISLHGLPGTGKNYVTDFIVSSIFK   77 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~~l~~   77 (202)
                      +.++|.=|||||++|--+|..|..
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~   28 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAE   28 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            456899999999999888888765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.00  E-value=0.37  Score=33.73  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=17.5

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy1695          54 ISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        54 ~ll~Gp~GtGKT~la~~la~   73 (202)
                      +|++|+..+|||..|..++.
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            58899999999999988763

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=0.96  Score=31.89  Aligned_cols=16  Identities=25%  Similarity=0.304  Sum_probs=13.6

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .+++..|+|+|||...
T Consensus        40 dvl~~A~TGsGKTla~   55 (207)
T d1t6na_          40 DVLCQAKSGMGKTAVF   55 (207)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEecccccccccc
Confidence            5899999999998654

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=81.54  E-value=0.98  Score=35.61  Aligned_cols=41  Identities=27%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHhHhccCCCCCceEEEEecCCCCcHHHHHHHHHHHhh
Q psy1695          27 QELAISHICGALKNHFQNRYHNTKALAISLHGLPGTGKNYVTDFIVSSIF   76 (202)
Q Consensus        27 q~~a~~~l~~~l~~~~~~~~~~~~pl~~ll~Gp~GtGKT~la~~la~~l~   76 (202)
                      |..|++.+.+.+..   +..      ...+.|.+|+||++++.++++.+.
T Consensus        13 qp~aI~~l~~~L~~---g~~------~~~L~GlsgS~ka~~~A~l~~~~~   53 (408)
T d1c4oa1          13 QPKAIAGLVEALRD---GER------FVTLLGATGTGKTVTMAKVIEALG   53 (408)
T ss_dssp             HHHHHHHHHHHHHT---TCS------EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhc---CCC------cEEEecCCCCHHHHHHHHHHHHhC
Confidence            56677777666653   111      468999999999999988888754

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.04  E-value=0.71  Score=32.98  Aligned_cols=16  Identities=25%  Similarity=0.320  Sum_probs=13.9

Q ss_pred             EEEEecCCCCcHHHHH
Q psy1695          53 AISLHGLPGTGKNYVT   68 (202)
Q Consensus        53 ~~ll~Gp~GtGKT~la   68 (202)
                      .++...|+|+|||...
T Consensus        51 dvl~~a~TGsGKTlay   66 (218)
T d2g9na1          51 DVIAQAQSGTGKTATF   66 (218)
T ss_dssp             CEEEECCTTSSHHHHH
T ss_pred             CEEEEcccchhhhhhh
Confidence            4889999999999765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.95  E-value=0.64  Score=32.34  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             CCce-EEEEecCCCCcHHHHHHHHHH
Q psy1695          49 TKAL-AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        49 ~~pl-~~ll~Gp~GtGKT~la~~la~   73 (202)
                      ++|. .+.+.|-...|||+|..+|..
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHh
Confidence            3554 488999999999999999954

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=2.4  Score=27.61  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=17.3

Q ss_pred             ceEEEEecCCCCChhHHHHHHHhccc
Q psy1695         123 RAIFIFDEVDKFPKGLLDVIIPFIDH  148 (202)
Q Consensus       123 ~~viiiDEid~~~~~~~~~L~~~le~  148 (202)
                      .++|+|||++-++ ++.+.+..+.+.
T Consensus        74 ~d~I~IDEaQFf~-dl~~~~~~~~~~   98 (133)
T d1xbta1          74 VAVIGIDEGQFFP-DIVEFCEAMANA   98 (133)
T ss_dssp             CSEEEESSGGGCT-THHHHHHHHHHT
T ss_pred             cceEEeehhHHHH-HHHHHHHHHHhc
Confidence            4799999999996 455555444444

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=80.39  E-value=0.69  Score=32.49  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             CCce-EEEEecCCCCcHHHHHHHHHH
Q psy1695          49 TKAL-AISLHGLPGTGKNYVTDFIVS   73 (202)
Q Consensus        49 ~~pl-~~ll~Gp~GtGKT~la~~la~   73 (202)
                      .+|. .+.+.|....|||||+.+|..
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            3674 599999999999999999853