Psyllid ID: psy16960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MSTSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS
Secondary Structure (PSIPRED)
ccccccEEEEEccEEEEEEEccccEEEEEcccccccccccccEEEEEccEEccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccEEEEEEEccccEEEEEccccccccccEcHHHHHHccccHHccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mstspshmidlkGYCIIIAetpdgkvklygspadksdleIGDEILEVngktfkdncnhnevithihdps
Flexible Loop (DISEMBL)
mstspshmiDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNgktfkdncnhnevithihdps
Low Complexity Region (SEG)
MSTSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS
Disordered region (IsUnstruct)
*******MIDLKGYCIIIAETPDGKVKLYGS*****DLEIGDEILEVNGKTFKDNCNHNEVITH*****
Disordered Region (DISOPRED)
***********KGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH***
Disordered Region (DISEMBL)
********IDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS
Disordered Region (DISPRO)
*****SHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
321476637	124	hypothetical protein DAPPUDRAFT_5846 [Da	0.840	0.467	0.711	2e-16
189236143	1043	PREDICTED: similar to AGAP002711-PA [Tri	0.840	0.055	0.711	3e-16
391329472	992	PREDICTED: MAGUK p55 subfamily member 5-	0.840	0.058	0.644	9e-15
270005716	64	hypothetical protein TcasGA2_TC007819 [T	0.840	0.906	0.688	3e-14
443731073	220	hypothetical protein CAPTEDRAFT_170318,	0.840	0.263	0.593	4e-13
39840964	180	RH69430p [Drosophila melanogaster]	0.942	0.361	0.545	7e-13
195447696	1626	GK25185 [Drosophila willistoni] gi|19416	0.942	0.039	0.560	9e-13
195048984	997	GH24103 [Drosophila grimshawi] gi|193893	0.942	0.065	0.530	1e-12
194762494	288	GF20361 [Drosophila ananassae] gi|190629	0.869	0.208	0.590	1e-12
242012465	86	conserved hypothetical protein [Pediculu	0.855	0.686	0.616	1e-12

>gi|321476637|gb|EFX87597.1| hypothetical protein DAPPUDRAFT_5846 [Daphnia pulex]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          M+DL GY II+ ET D K+KLYGSPADK+DLEIGDEILEVNGK+  D   H EVI+HIH
Sbjct: 1  MVDLGGYVIILVETRDQKIKLYGSPADKADLEIGDEILEVNGKSL-DGATHTEVISHIH 58

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236143|ref|XP_974746.2| PREDICTED: similar to AGAP002711-PA [Tribolium castaneum]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          M+DL GY II+AET D K+KLYGSPAD  +LE+GDEILEVNGKT +D C H EVI+HIH
Sbjct: 1  MVDLGGYVIILAETKDKKIKLYGSPADNDNLEVGDEILEVNGKTLEDAC-HAEVISHIH 58

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391329472|ref|XP_003739197.1| PREDICTED: MAGUK p55 subfamily member 5-like [Metaseiulus occidentalis]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          M+DL GY II+ ET D K++L+GSPAD++DLE+GDEILEVNGK+  +N +H EVI+HIH
Sbjct: 1  MVDLGGYVIILVETKDHKIRLFGSPADRADLEVGDEILEVNGKSL-ENLSHKEVISHIH 58

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005716|gb|EFA02164.1| hypothetical protein TcasGA2_TC007819 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 3/61 (4%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGS--PADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          M+DL GY II+AET D K+KLYGS  PAD  +LE+GDEILEVNGKT +D C H EVI+HI
Sbjct: 1  MVDLGGYVIILAETKDKKIKLYGSGSPADNDNLEVGDEILEVNGKTLEDAC-HAEVISHI 59

Query: 66 H 66
          H
Sbjct: 60 H 60

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443731073|gb|ELU16311.1| hypothetical protein CAPTEDRAFT_170318, partial [Capitella teleta]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          MIDL+GY I++  T DG ++L+GSPAD++DLE+GDEILEVNG+   + C H E+I+HIH
Sbjct: 1  MIDLEGYVILVVGTSDGNIRLFGSPADRADLEVGDEILEVNGQAL-EGCTHAEIISHIH 58

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|39840964|gb|AAR31118.1| RH69430p [Drosophila melanogaster]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 2  STSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
          S     +++L GY II+ E  +GK+KLYGSP D+ +LE+GDEILEVNG T  +N +  EV
Sbjct: 26 SQGKQQVVELSGYVIILVENVEGKIKLYGSPPDRDNLEVGDEILEVNGLTL-ENISRTEV 84

Query: 62 ITHIHD 67
          I HIHD
Sbjct: 85 IRHIHD 90

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447696|ref|XP_002071329.1| GK25185 [Drosophila willistoni] gi|194167414|gb|EDW82315.1| GK25185 [Drosophila willistoni]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 2  STSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
          S     +++L GY II+ E  +GK+KLYGSP D+ +LE+GDEILEVNG T  DN +  EV
Sbjct: 26 SQGKQQVVELSGYVIILVENVEGKIKLYGSPPDRDNLEVGDEILEVNGLTL-DNISRTEV 84

Query: 62 ITHIHD 67
          I HIHD
Sbjct: 85 IRHIHD 90

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195048984|ref|XP_001992629.1| GH24103 [Drosophila grimshawi] gi|193893470|gb|EDV92336.1| GH24103 [Drosophila grimshawi]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 2  STSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
          S     +++L GY II+ E  +GK+KLYGSP+D+ +LE+GDEILEVNG +  DN +  E 
Sbjct: 26 SQGKQQVVELSGYVIILVENAEGKIKLYGSPSDRDNLEVGDEILEVNGLSL-DNISRGEA 84

Query: 62 ITHIHD 67
          I HIHD
Sbjct: 85 IRHIHD 90

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762494|ref|XP_001963369.1| GF20361 [Drosophila ananassae] gi|190629028|gb|EDV44445.1| GF20361 [Drosophila ananassae]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 7  HMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
           +++L GY II+ E  +GK+KLYGSP D+ +LE+GDEILEVNG T  DN +  EVI HIH
Sbjct: 31 QVVELSGYVIILVENVEGKIKLYGSPPDRDNLEVGDEILEVNGLTL-DNISRTEVIRHIH 89

Query: 67 D 67
          D
Sbjct: 90 D 90

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012465|ref|XP_002426953.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511182|gb|EEB14215.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 8  MIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
          M+DL GY III ET D K+KLYGSP DK++L++G+EILEVNGK+  D  +H +VI+HIH 
Sbjct: 1  MVDLGGYVIIIVETKDKKIKLYGSPPDKANLKVGNEILEVNGKSM-DEPSHTKVISHIHQ 59

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0261873	2020	sdt "stardust" [Drosophila mel	0.942	0.032	0.545	1.8e-13
UNIPROTKB|Q17550	153	C01B7.5 "Protein C01B7.5" [Cae	0.797	0.359	0.368	6.3e-05

FB|FBgn0261873 sdt "stardust" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 36/66 (54%), Positives = 47/66 (71%)

Query:     2 STSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
             S     +++L GY II+ E  +GK+KLYGSP D+ +LE+GDEILEVNG T  +N +  EV
Sbjct:    26 SQGKQQVVELSGYVIILVENVEGKIKLYGSPPDRDNLEVGDEILEVNGLTL-ENISRTEV 84

Query:    62 ITHIHD 67
             I HIHD
Sbjct:    85 IRHIHD 90

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0016020 "membrane" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016324 "apical plasma membrane" evidence=NAS;IDA;TAS

GO:0045186 "zonula adherens assembly" evidence=IMP;TAS

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEP;IMP;IPI

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=IEP;IMP

GO:0045179 "apical cortex" evidence=IDA

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0035003 "subapical complex" evidence=TAS;IPI

GO:0005918 "septate junction" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q17550 C01B7.5 "Protein C01B7.5" [Caenorhabditis elegans (taxid:6239)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query:    11 LKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
             L G+ +I+ E  +  V+LYG+ A+++ L IGDEI+ VN    +   ++ EV T+I +
Sbjct:    41 LSGF-VILVEREEKVVRLYGTAAERAGLSIGDEIVGVNDMKIEGK-SYEEVTTYIQE 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 23  0.39    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  489 (52 KB)
  Total size of DFA:  97 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  8.80u 0.09s 8.89t   Elapsed:  00:00:21
  Total cpu time:  8.80u 0.09s 8.89t   Elapsed:  00:00:23
  Start:  Thu Aug 15 13:14:53 2013   End:  Thu Aug 15 13:15:16 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	4e-07
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	4e-07
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-06
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	6e-06
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	2e-04
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	2e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	3e-04
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	5e-04
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	6e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	7e-04
TIGR02860	402	TIGR02860, spore_IV_B, stage IV sporulation protei	0.004

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 42.3 bits (100), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA+++ L+ GD IL VNG   K+     +V   +
Sbjct: 23 GSPAERAGLQAGDVILAVNGTDVKNL-TLEDVAELL 57

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 42.2 bits (100), Expect = 4e-07
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          G PA++  L +GD ILEVNG +  +   H E +
Sbjct: 36 GGPAERGGLRVGDRILEVNGVSV-EGLTHEEAV 67

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          GSPA K+ L +GD ILEVNG + +    H E +
Sbjct: 36 GSPAAKAGLRVGDVILEVNGTSVE-GLTHLEAV 67

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 39.5 bits (93), Expect = 6e-06
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54
          L GSPA K+ ++ GD I+ ++G+    
Sbjct: 21 LPGSPAAKAGIKAGDIIVAIDGEPVDG 47

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
          GSPA K+ L+ GD IL +NG+  K 
Sbjct: 22 GSPAAKAGLKAGDRILAINGQKIKS 46

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 18  IAETPDGKVK----LYGSPADKSDLEIGDEILEVNGKTFKDN 55
           +     G VK    + GSPA K+ ++ GD I++++GK+    
Sbjct: 106 LQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGV 147

Length = 406

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 15/25 (60%), Positives = 17/25 (68%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
          GSPA K+ L+ GD IL VNGK  K 
Sbjct: 34 GSPAAKAGLKPGDVILAVNGKPVKS 58

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 34.5 bits (80), Expect = 5e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
          G  A+   L+ GD IL +NG+  ++
Sbjct: 34 GGAAEAGGLQEGDRILSINGQDLEN 58

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
           GSPA+K+ L+ GD I  VNGK    
Sbjct: 267 GSPAEKAGLKAGDVITSVNGKPISS 291

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 33.8 bits (78), Expect = 7e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 29 YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
           GSPA K+ L+ GD IL ++GK         EVI
Sbjct: 22 EGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVI 55

Length = 81

>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 20  ETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFK 53
           ET  GK+    SP +++ ++IGD IL++NG+  K
Sbjct: 116 ETEKGKIH---SPGEEAGIQIGDRILKINGEKIK 146

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else [Cellular processes, Sporulation and germination]. Length = 402

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.29
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.28
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.13
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.08
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.03
KOG3209|consensus	984		98.9
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.87
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.86
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.83
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.83
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.81
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.8
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.8
PRK11186	667	carboxy-terminal protease; Provisional	98.69
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.64
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.63
KOG3553|consensus	124		98.58
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.49
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.43
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.41
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.39
PRK10139	455	serine endoprotease; Provisional	98.31
PRK10139	455	serine endoprotease; Provisional	98.3
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.3
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.28
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.23
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.23
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.21
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	98.19
PRK10898	353	serine endoprotease; Provisional	98.19
PRK10942	473	serine endoprotease; Provisional	98.19
KOG3580|consensus	1027		98.18
PRK10942	473	serine endoprotease; Provisional	98.14
KOG3209|consensus	984		98.12
KOG3550|consensus	207		98.12
KOG3542|consensus	1283		97.86
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.69
KOG3552|consensus	1298		97.64
KOG3551|consensus	506		97.5
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.37
KOG3129|consensus	231		97.3
KOG3651|consensus	429		97.22
PF12812	78	PDZ_1: PDZ-like domain	97.04
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.98
KOG3532|consensus	1051		96.84
KOG0609|consensus	542		96.8
KOG1892|consensus	1629		96.72
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.69
KOG0606|consensus	1205		96.63
KOG1320|consensus	473		96.61
KOG3605|consensus	829		96.59
KOG3605|consensus	829		96.55
PRK09681	276	putative type II secretion protein GspC; Provision	96.52
KOG3549|consensus	505		96.5
KOG3606|consensus	358		96.41
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.29
KOG3571|consensus	626		96.16
KOG3580|consensus	1027		96.01
KOG1738|consensus	638		95.39
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.21
COG3031	275	PulC Type II secretory pathway, component PulC [In	93.43
KOG2921|consensus	484		91.68
KOG1421|consensus	955		88.87
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	88.64
KOG3938|consensus	334		88.16
PF07497	78	Rho_RNA_bind: Rho termination factor, RNA-binding	85.16
cd04459	68	Rho_CSD Rho_CSD: Rho protein cold-shock domain (CS	84.01
KOG4407|consensus	1973		82.07
KOG3834|consensus	462		81.77

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.29  E-value=8.7e-12  Score=72.51  Aligned_cols=57  Identities=30%  Similarity=0.543  Sum_probs=49.1

Q ss_pred             cCCeEEEEEEcCCC---eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG---KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+....+.   .+    +.+++||+++||++||+|++|||+++.+|+ +++++.+++..
T Consensus         9 ~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~-~~~~~~~l~~~   72 (81)
T PF00595_consen    9 NGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMS-HDEVVQLLKSA   72 (81)
T ss_dssp             TSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSB-HHHHHHHHHHS
T ss_pred             CCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCC-HHHHHHHHHCC
Confidence            57788888887764   32    458999999999999999999999999999 99999988754

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.28  E-value=2.4e-11  Score=68.28  Aligned_cols=55  Identities=33%  Similarity=0.474  Sum_probs=45.4

Q ss_pred             CeEEEEEEcCC-CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         13 GYCIIIAETPD-GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        13 g~~i~l~~~~~-~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ++||.+....+ +.+   +.+++||+++||++||+|++|||+++.+|+ ++++.++++..
T Consensus         2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~~   60 (70)
T cd00136           2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLT-LEDVAELLKKE   60 (70)
T ss_pred             CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhhC
Confidence            56777766655 332   458999999999999999999999999998 88999988753

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.13  E-value=3.9e-10  Score=65.41  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=43.9

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.|.|+.+.....+.+   +.+++||+++||++||+|++|||.++.+|. ++++...+++
T Consensus         1 ~~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~-~~~~~~~l~~   59 (85)
T cd00988           1 FGGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLS-LEDVVKLLRG   59 (85)
T ss_pred             CeEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHhcC
Confidence            4567777765444333   458999999999999999999999999996 6688777743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.08  E-value=2.4e-10  Score=66.90  Aligned_cols=48  Identities=33%  Similarity=0.569  Sum_probs=36.6

Q ss_pred             EEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         15 CIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        15 ~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      |+.+....+  +..   +.++|||+++||++||+|++|||+++.++.   ++.+.+
T Consensus         4 Gv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l   56 (82)
T PF13180_consen    4 GVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSE---DLVNIL   56 (82)
T ss_dssp             SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHH---HHHHHH
T ss_pred             CeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHH---HHHHHH
Confidence            555555544  332   468999999999999999999999998777   666665

...

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.03  E-value=1.2e-09  Score=62.62  Aligned_cols=56  Identities=30%  Similarity=0.490  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++|+.+....+   +.+   +.+++||+++||++||+|++|||+++.+++ ++++...++.
T Consensus        11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~-~~~~~~~l~~   72 (82)
T cd00992          11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLT-HEEAVELLKN   72 (82)
T ss_pred             CCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccC-HHHHHHHHHh
Confidence            4678888876543   332   458999999999999999999999999887 8899988865

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3209|consensus

Probab=98.90  E-value=2.5e-09  Score=84.88  Aligned_cols=59  Identities=31%  Similarity=0.631  Sum_probs=50.8

Q ss_pred             eccCCeEEEEEEcCCC---eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          9 IDLKGYCIIIAETPDG---KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         9 ~~~~g~~i~l~~~~~~---~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+-.||||++....+.   .|  +++||||++.| |++||+|++|||++|.+.+ |.+++++|+..
T Consensus       762 ~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~ls-Hadiv~LIKda  826 (984)
T KOG3209|consen  762 KENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLS-HADIVSLIKDA  826 (984)
T ss_pred             ccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccC-chhHHHHHHhc
Confidence            3467999999777542   24  68999999998 9999999999999999999 99999999864

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.87  E-value=1.4e-08  Score=57.85  Aligned_cols=56  Identities=36%  Similarity=0.513  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ...+|+.+.....   +.+   +.+++||+++||++||+|++|||+++.+++ ..+....++.
T Consensus        11 ~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~-~~~~~~~~~~   72 (85)
T smart00228       11 GGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLT-HLEAVDLLKK   72 (85)
T ss_pred             CCcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            3577888766542   332   458999999999999999999999999998 7676666543

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.86  E-value=3.5e-09  Score=61.79  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=31.9

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++...+.
T Consensus        17 V~~~spa~~aGL~~GDiI~~Ing~~v~~~~---d~~~~l~   53 (79)
T cd00991          17 VIVGSPAENAVLHTGDVIYSINGTPITTLE---DFMEALK   53 (79)
T ss_pred             ECCCChHHhcCCCCCCEEEEECCEEcCCHH---HHHHHHh
Confidence            357999999999999999999999999888   6655554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.83  E-value=1.4e-08  Score=72.73  Aligned_cols=56  Identities=29%  Similarity=0.505  Sum_probs=45.0

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|.|+.+....++.+   +.++|||+++||++||+|++|||+++.+|+ .+++...+++
T Consensus        50 ~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~-~~~~~~~l~~  108 (334)
T TIGR00225        50 LEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMS-LDDAVALIRG  108 (334)
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhccC
Confidence            4567888866544333   458999999999999999999999999997 7788777644

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.83  E-value=8e-09  Score=58.97  Aligned_cols=36  Identities=36%  Similarity=0.622  Sum_probs=31.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++...+
T Consensus        19 v~~~s~a~~~gl~~GD~I~~ing~~i~~~~---~~~~~l   54 (79)
T cd00989          19 VVPGSPAAKAGLKAGDRILAINGQKIKSWE---DLVDAV   54 (79)
T ss_pred             ECCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            458999999999999999999999999887   555554

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=1.9e-08  Score=74.64  Aligned_cols=58  Identities=26%  Similarity=0.438  Sum_probs=50.5

Q ss_pred             ccCCeEEEEEEcC-CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         10 DLKGYCIIIAETP-DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        10 ~~~g~~i~l~~~~-~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|.|.|+.+...+ +...   .++|+||+++||++||+|++|||+++.+.. .++++..|++.
T Consensus        98 ~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~-~~~av~~irG~  159 (406)
T COG0793          98 EFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVS-LDEAVKLIRGK  159 (406)
T ss_pred             cccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCC-HHHHHHHhCCC
Confidence            5889999998877 4433   357999999999999999999999999999 89999999864

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.80  E-value=2.2e-08  Score=73.48  Aligned_cols=56  Identities=21%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             cCCeEEEEEEcCC------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+|+.+...+.      +.+   +.+||||+++||++||+|++|||+++.++. .+++..++++
T Consensus        84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~-~~~~~~~l~g  148 (389)
T PLN00049         84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLS-LYEAADRLQG  148 (389)
T ss_pred             ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            6788888865443      222   458999999999999999999999999987 7788877754

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.80  E-value=1.1e-08  Score=58.72  Aligned_cols=35  Identities=34%  Similarity=0.425  Sum_probs=30.1

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITH   64 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~   64 (69)
                      +.++|||+++||++||+|++|||+++.+|.   ++.+.
T Consensus        19 V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~---~~l~~   53 (80)
T cd00990          19 VRDDSPADKAGLVAGDELVAVNGWRVDALQ---DRLKE   53 (80)
T ss_pred             ECCCChHHHhCCCCCCEEEEECCEEhHHHH---HHHHh
Confidence            468999999999999999999999999866   55544

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.69  E-value=4.5e-08  Score=76.70  Aligned_cols=57  Identities=32%  Similarity=0.480  Sum_probs=47.0

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhc-CCCCCCEEEEEC--C---EEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKS-DLEIGDEILEVN--G---KTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~a-GLk~GD~Il~Vn--g---~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.|.|+.+....+..+   +++||||+++ ||++||+|++||  |   .++.+|. +++++.+|+++
T Consensus       243 ~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~-~~~vv~lirG~  308 (667)
T PRK11186        243 LEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWR-LDDVVALIKGP  308 (667)
T ss_pred             eeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCC-HHHHHHHhcCC
Confidence            7789999977555433   4689999998 999999999999  4   3567898 99999999875

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.64  E-value=4.7e-08  Score=56.52  Aligned_cols=35  Identities=43%  Similarity=0.703  Sum_probs=29.5

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+||||++ ||++||+|++|||+++.+|+   ++...+.
T Consensus        16 ~~~s~A~~-gL~~GD~I~~Ing~~v~~~~---~~~~~l~   50 (79)
T cd00986          16 VEGMPAAG-KLKAGDHIIAVDGKPFKEAE---ELIDYIQ   50 (79)
T ss_pred             CCCCchhh-CCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence            57899987 79999999999999999888   5555543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.63  E-value=4.3e-08  Score=56.89  Aligned_cols=34  Identities=44%  Similarity=0.551  Sum_probs=29.5

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      .+++||+++||++||+|++|||+++.+|+++.++
T Consensus        32 ~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~   65 (90)
T cd00987          32 DPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRA   65 (90)
T ss_pred             CCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHH
Confidence            5799999999999999999999999998834333

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3553|consensus

Probab=98.58  E-value=6.4e-08  Score=61.65  Aligned_cols=39  Identities=38%  Similarity=0.583  Sum_probs=35.9

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+||||+.|||+.+|+|+.+||-.+.-.+ ++.+++.|+.
T Consensus        67 ~eGsPA~~AGLrihDKIlQvNG~DfTMvT-Hd~Avk~i~k  105 (124)
T KOG3553|consen   67 SEGSPAEIAGLRIHDKILQVNGWDFTMVT-HDQAVKRITK  105 (124)
T ss_pred             ccCChhhhhcceecceEEEecCceeEEEE-hHHHHHHhhH
Confidence            57999999999999999999999998888 9999988864

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.49  E-value=1.2e-07  Score=70.46  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=29.4

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCCh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNH   58 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~   58 (69)
                      +.++|||++||||+||+|++|||+++.+|+|+
T Consensus       133 V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l  164 (449)
T PRK10779        133 IAPNSIAAQAQIAPGTELKAVDGIETPDWDAV  164 (449)
T ss_pred             cCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH
Confidence            46899999999999999999999999999843

>TIGR00054 RIP metalloprotease RseP

Probab=98.43  E-value=2.1e-07  Score=68.89  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=31.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||+++|||+||+|++|||+++.+|+   ++.+.+
T Consensus       210 V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~---dl~~~l  245 (420)
T TIGR00054       210 VTPNSPAEKAGLKEGDYIQSINGEKLRSWT---DFVSAV  245 (420)
T ss_pred             ECCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            458999999999999999999999999998   555544

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.41  E-value=2.6e-07  Score=68.73  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||++|||++||+|++|||+++.+|+   ++.+.+
T Consensus       228 V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~---dl~~~l  263 (449)
T PRK10779        228 VQPNSAASKAGLQAGDRIVKVDGQPLTQWQ---TFVTLV  263 (449)
T ss_pred             eCCCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHH
Confidence            458999999999999999999999999998   555544

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.39  E-value=3.2e-07  Score=69.17  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||+++||++||+|++|||+++.+|.   ++...+
T Consensus         5 V~pgSpAe~AGLe~GD~IlsING~~V~Dw~---D~~~~l   40 (433)
T TIGR03279         5 VLPGSIAEELGFEPGDALVSINGVAPRDLI---DYQFLC   40 (433)
T ss_pred             cCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHh
Confidence            468999999999999999999999999998   554443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PRK10139 serine endoprotease; Provisional

Probab=98.31  E-value=6.3e-07  Score=67.22  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||+++|||+||+|++|||+++.+|+   ++...+
T Consensus       297 V~~~SpA~~AGL~~GDvIl~InG~~V~s~~---dl~~~l  332 (455)
T PRK10139        297 VLPNSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRI  332 (455)
T ss_pred             ECCCChHHHCCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            458999999999999999999999999999   554444

>PRK10139 serine endoprotease; Provisional

Probab=98.30  E-value=6.4e-07  Score=67.19  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++.+.++
T Consensus       397 V~~~spA~~aGL~~GD~I~~Ing~~v~~~~---~~~~~l~  433 (455)
T PRK10139        397 VVKGSPAAQAGLQKDDVIIGVNRDRVNSIA---EMRKVLA  433 (455)
T ss_pred             eCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            357999999999999999999999999999   5555543

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.30  E-value=1.9e-06  Score=60.87  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      .+++||+++|||+||+|++|||+++.++++..++...+
T Consensus       199 ~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~  236 (259)
T TIGR01713       199 KDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQML  236 (259)
T ss_pred             CCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhc
Confidence            46899999999999999999999999998444444433

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.28  E-value=7.2e-07  Score=65.66  Aligned_cols=36  Identities=44%  Similarity=0.633  Sum_probs=30.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHH
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI   62 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~   62 (69)
                      +.+||||+++||++||+|++|||+++.+|.++.+++
T Consensus       264 V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l  299 (428)
T TIGR02037       264 VLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAI  299 (428)
T ss_pred             ccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHH
Confidence            358999999999999999999999999988444433

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.23  E-value=1.2e-06  Score=63.58  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=29.7

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      .+++||+++||++||+|++|||+++.+|+|+.+.
T Consensus       286 ~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~  319 (351)
T TIGR02038       286 DPNGPAARAGILVRDVILKYDGKDVIGAEELMDR  319 (351)
T ss_pred             CCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHH
Confidence            5799999999999999999999999999844333

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR00054 RIP metalloprotease RseP

Probab=98.23  E-value=1.2e-06  Score=64.86  Aligned_cols=32  Identities=34%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCCh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNH   58 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~   58 (69)
                      +.++|||++||||+||+|++|||+++.++.++
T Consensus       135 V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl  166 (420)
T TIGR00054       135 LDKNSIALEAGIEPGDEILSVNGNKIPGFKDV  166 (420)
T ss_pred             cCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH
Confidence            46899999999999999999999999999833

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.21  E-value=1.5e-06  Score=64.05  Aligned_cols=37  Identities=32%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.+++   ++.+.++
T Consensus       369 V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~---d~~~~l~  405 (428)
T TIGR02037       369 VVSGSPAARAGLQPGDVILSVNQQPVSSVA---ELRKVLD  405 (428)
T ss_pred             eCCCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            357999999999999999999999999888   5555443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=98.19  E-value=4.4e-06  Score=62.60  Aligned_cols=33  Identities=33%  Similarity=0.662  Sum_probs=29.1

Q ss_pred             CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      ++||+++|||+||+|++|||+++.+|+   ++.+.+
T Consensus       123 ~SPAa~AGLq~GDiIvsING~~V~s~~---DL~~iL  155 (402)
T TIGR02860       123 HSPGEEAGIQIGDRILKINGEKIKNMD---DLANLI  155 (402)
T ss_pred             CCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            599999999999999999999999999   555444

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10898 serine endoprotease; Provisional

Probab=98.19  E-value=1.7e-06  Score=62.97  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      +.++|||+++||++||+|++|||+++.+|.++.+.
T Consensus       286 V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~  320 (353)
T PRK10898        286 VSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQ  320 (353)
T ss_pred             ECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHH
Confidence            35899999999999999999999999998733333

>PRK10942 serine endoprotease; Provisional

Probab=98.19  E-value=1.6e-06  Score=65.34  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHH
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNE   60 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~e   60 (69)
                      +.++|||+++||+.||+|++|||+++.+|+++..
T Consensus       318 V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~  351 (473)
T PRK10942        318 VLPNSSAAKAGIKAGDVITSLNGKPISSFAALRA  351 (473)
T ss_pred             ECCCChHHHcCCCCCCEEEEECCEECCCHHHHHH
Confidence            4589999999999999999999999999984433

>KOG3580|consensus

Probab=98.18  E-value=2.6e-06  Score=67.56  Aligned_cols=59  Identities=25%  Similarity=0.374  Sum_probs=49.8

Q ss_pred             EeccCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MIDLKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+...+|+.|...++-.|    +.+|+||++.||+.||+|++||.+++.+.. .++++.++-+
T Consensus       413 F~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~-REeAVlfLL~  475 (1027)
T KOG3580|consen  413 FKKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLV-REEAVLFLLE  475 (1027)
T ss_pred             eecCCeeeeEeccCCceeEEEeecccCCchhhccccccceeEEeccccchhhh-HHHHHHHHhc
Confidence            4456678888888777554    458999999999999999999999999999 9999987754

>PRK10942 serine endoprotease; Provisional

Probab=98.14  E-value=2.3e-06  Score=64.47  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++.+.++
T Consensus       415 V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~---dl~~~l~  451 (473)
T PRK10942        415 VKPGTPAAQIGLKKGDVIIGANQQPVKNIA---ELRKILD  451 (473)
T ss_pred             eCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            357999999999999999999999999998   5555543

>KOG3209|consensus

Probab=98.12  E-value=2.5e-06  Score=68.17  Aligned_cols=56  Identities=27%  Similarity=0.436  Sum_probs=48.0

Q ss_pred             cCCeEEEEEEcCCCeE------EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV------KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i------v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      -+||||-+-..+....      ..+.+||.+.| +++||+|++|||++..+++ |++++++|++
T Consensus       908 ~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmt-H~rAIelIk~  970 (984)
T KOG3209|consen  908 AKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMT-HDRAIELIKQ  970 (984)
T ss_pred             ccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCc-HHHHHHHHHh
Confidence            5789998877654331      35799999998 9999999999999999999 9999999975

>KOG3550|consensus

Probab=98.12  E-value=3.2e-06  Score=57.47  Aligned_cols=56  Identities=21%  Similarity=0.397  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      -.|.||.+...+..  .|    +++|+-|++- |||.||++++|||.++++-. ++.++++++.
T Consensus       100 deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~-hekavellka  162 (207)
T KOG3550|consen  100 DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEH-HEKAVELLKA  162 (207)
T ss_pred             ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchh-hHHHHHHHHH
Confidence            56777777666532  23    5799999987 69999999999999999999 9999999864

>KOG3542|consensus

Probab=97.86  E-value=8.8e-06  Score=65.40  Aligned_cols=50  Identities=36%  Similarity=0.584  Sum_probs=43.2

Q ss_pred             cCCeEEEEEEcCCCeEEecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+||||++.+      +.+|+.|+++|||.||+|++|||+++++.+ ...+.++++.
T Consensus       559 EkGfgifV~~------V~pgskAa~~GlKRgDqilEVNgQnfenis-~~KA~eiLrn  608 (1283)
T KOG3542|consen  559 EKGFGIFVAE------VFPGSKAAREGLKRGDQILEVNGQNFENIS-AKKAEEILRN  608 (1283)
T ss_pred             cccceeEEee------ecCCchHHHhhhhhhhhhhhccccchhhhh-HHHHHHHhcC
Confidence            5677777765      368999999999999999999999999998 8888888765

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.69  E-value=0.00015  Score=47.21  Aligned_cols=51  Identities=24%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCeEEEEEEcCC---C--eE--EecCChHhhcCCCC-CCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         12 KGYCIIIAETPD---G--KV--KLYGSPADKSDLEI-GDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        12 ~g~~i~l~~~~~---~--~i--v~~gspA~~aGLk~-GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      -|..+.......   .  +|  |.+||||++|||++ .|.|+.+++..+.+.+   ++.+++
T Consensus        28 LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~---~l~~~v   86 (138)
T PF04495_consen   28 LGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED---DLFELV   86 (138)
T ss_dssp             S-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC---HHHHHH
T ss_pred             CcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH---HHHHHH
Confidence            355555555441   1  12  56999999999999 6999999999998766   555544

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG3552|consensus

Probab=97.64  E-value=3.5e-05  Score=63.19  Aligned_cols=54  Identities=28%  Similarity=0.406  Sum_probs=41.6

Q ss_pred             CCeEEEEEEcCCCeEEecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      =||||+-..----+.|.+|+|+.-. |++||+|++|||.++.+.. .|.++.+++.
T Consensus        67 lGFgfvagrPviVr~VT~GGps~GK-L~PGDQIl~vN~Epv~dap-rervIdlvRa  120 (1298)
T KOG3552|consen   67 LGFGFVAGRPVIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAP-RERVIDLVRA  120 (1298)
T ss_pred             ccceeecCCceEEEEecCCCCcccc-ccCCCeEEEecCccccccc-HHHHHHHHHH
Confidence            3788876511001125689998864 9999999999999999999 9999998863

>KOG3551|consensus

Probab=97.50  E-value=8.9e-05  Score=56.28  Aligned_cols=57  Identities=33%  Similarity=0.550  Sum_probs=50.0

Q ss_pred             ccCCeEEEEEEcCCCeE------EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPDGKV------KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~~~i------v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+|-||-+....+|+.      +.+|-+|++.+ |..||.|++|||.+..+.+ |+++++.+++
T Consensus        94 d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~At-HdeAVqaLKr  157 (506)
T KOG3551|consen   94 DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDAT-HDEAVQALKR  157 (506)
T ss_pred             cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcc-hHHHHHHHHh
Confidence            37899999988888763      35799999886 9999999999999999999 9999998875

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00023  Score=50.99  Aligned_cols=36  Identities=36%  Similarity=0.570  Sum_probs=31.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+++||+++|++.||.|+++||+++.+..   ++...+
T Consensus       277 v~~~spa~~agi~~Gdii~~vng~~v~~~~---~l~~~v  312 (347)
T COG0265         277 VLPGSPAAKAGIKAGDIITAVNGKPVASLS---DLVAAV  312 (347)
T ss_pred             cCCCChHHHcCCCCCCEEEEECCEEccCHH---HHHHHH
Confidence            458999999999999999999999999887   555444

>KOG3129|consensus

Probab=97.30  E-value=0.00026  Score=49.81  Aligned_cols=35  Identities=31%  Similarity=0.435  Sum_probs=27.8

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      +.++|||++|||+.||+|+++.+..--++..+..+
T Consensus       146 V~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i  180 (231)
T KOG3129|consen  146 VVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNI  180 (231)
T ss_pred             cCCCChhhhhCcccCceEEEecccccccchhHHHH
Confidence            46899999999999999999988776655533333

>KOG3651|consensus

Probab=97.22  E-value=0.00038  Score=51.72  Aligned_cols=40  Identities=35%  Similarity=0.474  Sum_probs=35.8

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +..++||++-| ++.||+|++|||.++.+.. -.++.++|+.
T Consensus        37 vFD~tPAa~dG~i~~GDEi~avNg~svKGkt-KveVAkmIQ~   77 (429)
T KOG3651|consen   37 VFDKTPAAKDGRIRCGDEIVAVNGISVKGKT-KVEVAKMIQV   77 (429)
T ss_pred             eccCCchhccCccccCCeeEEecceeecCcc-HHHHHHHHHH
Confidence            35799999987 9999999999999999999 8888888864

>PF12812 PDZ_1: PDZ-like domain

Probab=97.04  E-value=0.00094  Score=39.69  Aligned_cols=37  Identities=32%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             cCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         29 YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        29 ~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      .|+++.+.|+..|-.|.+||++++.+.+++.++++.|
T Consensus        39 ~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~~vvk~i   75 (78)
T PF12812_consen   39 GGSLAFAGGISKGFIITSVNGKPTPDLDDFIKVVKKI   75 (78)
T ss_pred             CCChhhhCCCCCCeEEEeECCcCCcCHHHHHHHHHhC
Confidence            5788888889999999999999999877455544443

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.98  E-value=0.00087  Score=52.13  Aligned_cols=24  Identities=42%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCE
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGK   50 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~   50 (69)
                      |.+||||++|||.+||+|++|||.
T Consensus       469 V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         469 VFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             cCCCChhHhccCCCccEEEEEcCc
Confidence            468999999999999999999999

>KOG3532|consensus

Probab=96.84  E-value=0.0016  Score=52.63  Aligned_cols=49  Identities=16%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         13 GYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        13 g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      ..|++.-..-+..+    |.+++||.++.|++||.+++|||+||.+..+...+
T Consensus       387 ~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~~q~~~~  439 (1051)
T KOG3532|consen  387 PIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSERQATRF  439 (1051)
T ss_pred             ceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhHHHHHHH
Confidence            34666644332222    45899999999999999999999999988733333

>KOG0609|consensus

Probab=96.80  E-value=0.0018  Score=50.32  Aligned_cols=53  Identities=34%  Similarity=0.493  Sum_probs=42.3

Q ss_pred             EEEEEEcCCCe-E---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         15 CIIIAETPDGK-V---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        15 ~i~l~~~~~~~-i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      |+.+...+.+. +   ++.|+.+++.| |+.||+|.+|||.++.+.+ .+++..+++..
T Consensus       137 G~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~-~~e~q~~l~~~  194 (542)
T KOG0609|consen  137 GATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKS-PEELQELLRNS  194 (542)
T ss_pred             ceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCC-HHHHHHHHHhC
Confidence            55555544433 3   45799999998 9999999999999999998 99999888654

>KOG1892|consensus

Probab=96.72  E-value=0.0038  Score=52.12  Aligned_cols=60  Identities=22%  Similarity=0.382  Sum_probs=46.6

Q ss_pred             EeccCCeEEEEEEcCCC---e--E----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          8 MIDLKGYCIIIAETPDG---K--V----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~~~---~--i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.|-+|.|+-++..+..   +  |    |++|+||+..| |++||++++|||++.-+.+ -|++..+|.+.
T Consensus       939 L~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGis-QErAA~lmtrt 1008 (1629)
T KOG1892|consen  939 LKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGIS-QERAARLMTRT 1008 (1629)
T ss_pred             EeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCccccccc-HHHHHHHHhcc
Confidence            34457777766655431   1  2    57899999887 9999999999999999999 88988887553

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.69  E-value=0.0029  Score=38.55  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             CChHhhcC--CCCCCEEEEECCEEeCCCC
Q psy16960         30 GSPADKSD--LEIGDEILEVNGKTFKDNC   56 (69)
Q Consensus        30 gspA~~aG--Lk~GD~Il~Vng~~i~~~~   56 (69)
                      .||-.+.|  +++||.|++|||+++..-.
T Consensus        30 ~sPL~~pGv~v~~GD~I~aInG~~v~~~~   58 (88)
T PF14685_consen   30 RSPLAQPGVDVREGDYILAINGQPVTADA   58 (88)
T ss_dssp             B-GGGGGS----TT-EEEEETTEE-BTTB
T ss_pred             cCCccCCCCCCCCCCEEEEECCEECCCCC
Confidence            48888887  5599999999999999776

>KOG0606|consensus

Probab=96.63  E-value=0.0015  Score=54.44  Aligned_cols=39  Identities=36%  Similarity=0.448  Sum_probs=36.4

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+|+||..+||+++|.|+.|||+++.+.. |.++++++-
T Consensus       665 v~egsPA~~agls~~DlIthvnge~v~gl~-H~ev~~Lll  703 (1205)
T KOG0606|consen  665 VEEGSPAFEAGLSAGDLITHVNGEPVHGLV-HTEVMELLL  703 (1205)
T ss_pred             ecCCCCccccCCCccceeEeccCcccchhh-HHHHHHHHH
Confidence            468999999999999999999999999999 999999874

>KOG1320|consensus

Probab=96.61  E-value=0.002  Score=49.37  Aligned_cols=38  Identities=32%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+|+++..++++.||+|++|||+++.+..   ++..+|+.
T Consensus       405 Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~---~l~~~i~~  442 (473)
T KOG1320|consen  405 VLPGSINGGYGLKPGDQVVKVNGKPVKNLK---HLYELIEE  442 (473)
T ss_pred             eccCCCcccccccCCCEEEEECCEEeechH---HHHHHHHh
Confidence            358999999999999999999999999888   66666654

>KOG3605|consensus

Probab=96.59  E-value=0.0056  Score=49.11  Aligned_cols=39  Identities=31%  Similarity=0.527  Sum_probs=35.1

Q ss_pred             ecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         28 LYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        28 ~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++||++.| |-.||+|++|||.+.-+.. +..-..+|+.
T Consensus       681 m~~GpAarsgkLnIGDQiiaING~SLVGLP-LstcQs~Ik~  720 (829)
T KOG3605|consen  681 MHGGPAARSGKLNIGDQIMSINGTSLVGLP-LSTCQSIIKG  720 (829)
T ss_pred             ccCChhhhcCCccccceeEeecCceecccc-HHHHHHHHhc
Confidence            4799999998 9999999999999999998 8888888765

>KOG3605|consensus

Probab=96.55  E-value=0.0023  Score=51.17  Aligned_cols=38  Identities=24%  Similarity=0.571  Sum_probs=35.6

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+=|++.|+++|-+|++|||++|---. |+.|+++|.
T Consensus       764 lRGGIAERGGVRVGHRIIEINgQSVVA~p-HekIV~lLs  801 (829)
T KOG3605|consen  764 LRGGIAERGGVRVGHRIIEINGQSVVATP-HEKIVQLLS  801 (829)
T ss_pred             hcccchhccCceeeeeEEEECCceEEecc-HHHHHHHHH
Confidence            47999999999999999999999999999 999999874

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.52  E-value=0.0029  Score=45.62  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             EecCChH---hhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPA---DKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA---~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+|..+   .++|||+||.+++|||.++.+.++..++.+.|
T Consensus       211 l~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L  252 (276)
T PRK09681        211 VKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQL  252 (276)
T ss_pred             ECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHh
Confidence            3455433   47799999999999999999776333444443

>KOG3549|consensus

Probab=96.50  E-value=0.003  Score=47.83  Aligned_cols=57  Identities=26%  Similarity=0.385  Sum_probs=45.8

Q ss_pred             ccCCeEEEEEEcCCCeE------EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPDGKV------KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~~~i------v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +..|+|+-+.......+      +...-+|+..| |-.||-|++|||..+..-. |||++++++.
T Consensus        64 ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~-HeevV~iLRN  127 (505)
T KOG3549|consen   64 KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACP-HEEVVNILRN  127 (505)
T ss_pred             ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCC-hHHHHHHHHh
Confidence            36788888876655432      23577888887 8899999999999999999 9999999864

>KOG3606|consensus

Probab=96.41  E-value=0.0051  Score=45.19  Aligned_cols=39  Identities=28%  Similarity=0.446  Sum_probs=35.3

Q ss_pred             ecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         28 LYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        28 ~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ++|+-|+.-| |.++|+|++|||.++.+.+ ++++...|-+
T Consensus       202 VpGGLAeSTGLLaVnDEVlEVNGIEVaGKT-LDQVTDMMvA  241 (358)
T KOG3606|consen  202 VPGGLAESTGLLAVNDEVLEVNGIEVAGKT-LDQVTDMMVA  241 (358)
T ss_pred             cCCccccccceeeecceeEEEcCEEecccc-HHHHHHHHhh
Confidence            5899999999 7899999999999999999 9999887743

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.29  E-value=0.0058  Score=43.68  Aligned_cols=30  Identities=27%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNC   56 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~   56 (69)
                      +..+++|+.+||++||+|+++|+.++.+|+
T Consensus       136 v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~  165 (375)
T COG0750         136 VAPKSAAALAGLRPGDRIVAVDGEKVASWD  165 (375)
T ss_pred             cCCCCHHHHcCCCCCCEEEeECCEEccCHH
Confidence            467899999999999999999999999998

>KOG3571|consensus

Probab=96.16  E-value=0.0048  Score=48.24  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=34.1

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +++|++-+.-| +.+||.|+.||..++++++ .++++..|++
T Consensus       284 ImkgGAVA~DGRIe~GDMiLQVNevsFENmS-Nd~AVrvLRE  324 (626)
T KOG3571|consen  284 IMKGGAVALDGRIEPGDMILQVNEVSFENMS-NDQAVRVLRE  324 (626)
T ss_pred             eccCceeeccCccCccceEEEeeecchhhcC-chHHHHHHHH
Confidence            46777666665 9999999999999999999 9999988863

>KOG3580|consensus

Probab=96.01  E-value=0.0058  Score=49.07  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      |=+|...+|+.||.|++|||...++++ +.+..++|..+
T Consensus       230 gLAardgnlqEGDiiLkINGtvteNmS-LtDar~LIEkS  267 (1027)
T KOG3580|consen  230 GLAARDGNLQEGDIILKINGTVTENMS-LTDARKLIEKS  267 (1027)
T ss_pred             chhhccCCcccccEEEEECcEeecccc-chhHHHHHHhc
Confidence            444445579999999999999999999 99999998654

>KOG1738|consensus

Probab=95.39  E-value=0.029  Score=44.48  Aligned_cols=57  Identities=26%  Similarity=0.359  Sum_probs=46.3

Q ss_pred             ccCCeEEEEEEcCCCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPDGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +-.|-|+++...-+|..    +.+++||.... +..||+|+.||++.+.+|+ +.-+++.++.
T Consensus       211 p~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwq-lk~vV~sL~~  272 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQ-LKVVVSSLRE  272 (638)
T ss_pred             cccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccch-hHhHHhhccc
Confidence            34567777777777653    35799999875 9999999999999999999 9999887754

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.21  E-value=0.069  Score=39.68  Aligned_cols=35  Identities=34%  Similarity=0.582  Sum_probs=28.4

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+++|+... |+.||.|++|||+++.+.+   ++..+++
T Consensus       138 ~~~~~~~gk-l~~gD~i~avdg~~f~s~~---e~i~~v~  172 (342)
T COG3480         138 IDNSPFKGK-LEAGDTIIAVDGEPFTSSD---ELIDYVS  172 (342)
T ss_pred             cCCcchhce-eccCCeEEeeCCeecCCHH---HHHHHHh
Confidence            456777664 9999999999999999887   7766664

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=93.43  E-value=0.12  Score=37.34  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             cCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         29 YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        29 ~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +++.=++.|||.||.-+++|+.++.+-+   ++.++++
T Consensus       216 d~slF~~sglq~GDIavaiNnldltdp~---~m~~llq  250 (275)
T COG3031         216 DGSLFYKSGLQRGDIAVAINNLDLTDPE---DMFRLLQ  250 (275)
T ss_pred             CcchhhhhcCCCcceEEEecCcccCCHH---HHHHHHH
Confidence            3566778899999999999999998766   6666554

>KOG2921|consensus

Probab=91.68  E-value=0.15  Score=39.19  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             CCceEec--cCCeEEEEEEcCCCeEEecCChHh-hcCCCCCCEEEEECCEEeCCCC
Q psy16960          4 SPSHMID--LKGYCIIIAETPDGKVKLYGSPAD-KSDLEIGDEILEVNGKTFKDNC   56 (69)
Q Consensus         4 ~~~~~~~--~~g~~i~l~~~~~~~iv~~gspA~-~aGLk~GD~Il~Vng~~i~~~~   56 (69)
                      .|=-|-+  ..|+++.+.+...      -||+. .-||.+||+|.++||-++++-+
T Consensus       208 lpViLsPfya~g~gV~Vtev~~------~Spl~gprGL~vgdvitsldgcpV~~v~  257 (484)
T KOG2921|consen  208 LPVILSPFYAHGEGVTVTEVPS------VSPLFGPRGLSVGDVITSLDGCPVHKVS  257 (484)
T ss_pred             hhHhhchhhhcCceEEEEeccc------cCCCcCcccCCccceEEecCCcccCCHH
Confidence            3444455  6788888877532      24443 2299999999999999998766

>KOG1421|consensus

Probab=88.87  E-value=0.28  Score=40.10  Aligned_cols=32  Identities=38%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHH
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNE   60 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~e   60 (69)
                      .+++||++. |++||.+++||+.-+.++..+++
T Consensus       311 L~~gpa~k~-Le~GDillavN~t~l~df~~l~~  342 (955)
T KOG1421|consen  311 LPEGPAEKK-LEPGDILLAVNSTCLNDFEALEQ  342 (955)
T ss_pred             ccCCchhhc-cCCCcEEEEEcceehHHHHHHHH
Confidence            579999997 99999999999888876663333

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=88.64  E-value=0.68  Score=31.70  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=26.4

Q ss_pred             CeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEEC
Q psy16960         13 GYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVN   48 (69)
Q Consensus        13 g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vn   48 (69)
                      ..|+.+....+..+   +..||||+++|+.-|++|++|-
T Consensus       112 ~~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~  150 (183)
T PF11874_consen  112 AAGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEITEVE  150 (183)
T ss_pred             hCCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence            34677755443332   3479999999999999999874

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>KOG3938|consensus

Probab=88.16  E-value=0.36  Score=35.54  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             ecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         28 LYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        28 ~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -+||--.+. -+++||.|.+|||+++-+|. |-++..+++..
T Consensus       157 kegsvidri~~i~VGd~IEaiNge~ivG~R-HYeVArmLKel  197 (334)
T KOG3938|consen  157 KEGSVIDRIEAICVGDHIEAINGESIVGKR-HYEVARMLKEL  197 (334)
T ss_pred             cCCchhhhhhheeHHhHHHhhcCccccchh-HHHHHHHHHhc
Confidence            467766655 48999999999999999999 99999988753

>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts

Probab=85.16  E-value=0.82  Score=27.33  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=22.9

Q ss_pred             cCCeEEEEEEcC-----CCeEEecCChHhhcCCCCCCEEEE
Q psy16960         11 LKGYCIIIAETP-----DGKVKLYGSPADKSDLEIGDEILE   46 (69)
Q Consensus        11 ~~g~~i~l~~~~-----~~~iv~~gspA~~aGLk~GD~Il~   46 (69)
                      -.||||.-....     ..-+.++.+...+-||+.||.|.-
T Consensus        11 ~dGyGFLR~~~~~y~~~~~DvYVs~~qIrrf~LR~GD~V~G   51 (78)
T PF07497_consen   11 PDGYGFLRSPDNNYLPSPDDVYVSPSQIRRFGLRTGDLVEG   51 (78)
T ss_dssp             TTS-EEEE-GGGTTS-STTSEEE-CCCCCCTT--TTEEEEE
T ss_pred             CCCcEEeECCCcCCCCCCCCEEECHHHHHHcCCCCCCEEEE
Confidence            479999987621     233667778888999999999874

It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....

>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD)

Probab=84.01  E-value=1.6  Score=25.38  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=26.8

Q ss_pred             cCCeEEEEEEcC-----CCeEEecCChHhhcCCCCCCEEEEE
Q psy16960         11 LKGYCIIIAETP-----DGKVKLYGSPADKSDLEIGDEILEV   47 (69)
Q Consensus        11 ~~g~~i~l~~~~-----~~~iv~~gspA~~aGLk~GD~Il~V   47 (69)
                      -.||||......     .+-+.++.+.-.+-||+.||.|.-.
T Consensus         9 ~~g~GFLR~~~~~y~~~~~DvyVs~~~Irr~~LR~GD~V~G~   50 (68)
T cd04459           9 PDGFGFLRSSGYNYLPGPDDIYVSPSQIRRFNLRTGDTVVGQ   50 (68)
T ss_pred             CCCceEEecCCcCCCCCCCCEEECHHHHHHhCCCCCCEEEEE
Confidence            458998886632     1235567777888999999999863

Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.

>KOG4407|consensus

Probab=82.07  E-value=0.91  Score=39.61  Aligned_cols=40  Identities=23%  Similarity=0.392  Sum_probs=36.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.+++||.-+.||-||+++.||.+++.... ..+++..|++
T Consensus       150 V~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~-~s~~~S~~~q  189 (1973)
T KOG4407|consen  150 VQANGPAHYANLQTGDRVLMVNNQPIAGIA-YSTIVSMIKQ  189 (1973)
T ss_pred             hccCChhHHHhhhccceeEEeecCcccchh-hhhhhhhhcc
Confidence            457999999999999999999999999998 9999988875

>KOG3834|consensus

Probab=81.77  E-value=3.1  Score=32.21  Aligned_cols=30  Identities=33%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             EecCChHhhcCCCC-CCEEEEECCEEeCCCC
Q psy16960         27 KLYGSPADKSDLEI-GDEILEVNGKTFKDNC   56 (69)
Q Consensus        27 v~~gspA~~aGLk~-GD~Il~Vng~~i~~~~   56 (69)
                      +.++|||++|||.+ =|-|++|||..++...
T Consensus        22 VqedSpa~~aglepffdFIvSI~g~rL~~dn   52 (462)
T KOG3834|consen   22 VQEDSPAHKAGLEPFFDFIVSINGIRLNKDN   52 (462)
T ss_pred             eecCChHHhcCcchhhhhhheeCcccccCch
Confidence            46789999999887 5788999999998544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	6e-09
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	6e-08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	7e-08
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	7e-08
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	7e-08
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-08
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	1e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-07
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-07
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-07
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-07
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-07
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-07
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-07
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-07
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-07
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-07
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	3e-07
3khf_A	99	Microtubule-associated serine/threonine-protein ki	3e-07
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-07
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-07
2ego_A	96	General receptor for phosphoinositides 1- associat	4e-07
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	5e-07
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	5e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	5e-07
2d90_A	102	PDZ domain containing protein 1; structural genomi	5e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	6e-07
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	6e-07
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	6e-07
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	6e-07
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	7e-07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	8e-07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	8e-07
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	8e-07
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	1e-06
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-06
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-06
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	2e-06
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-06
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	3e-06
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	3e-06
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	4e-06
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-06
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	5e-06
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	6e-06
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	6e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	6e-06
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	6e-06
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	6e-06
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	7e-06
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	8e-06
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	9e-06
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	1e-05
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-05
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-05
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	1e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	2e-05
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-05
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-05
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-05
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-05
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-05
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-05
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	3e-05
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-05
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	3e-05
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	3e-05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-04
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	3e-05
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	4e-05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	4e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	4e-05
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-05
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	5e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	7e-05
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	6e-05
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	6e-05
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	6e-05
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	7e-05
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	8e-05
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	8e-05
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	9e-05
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	9e-05
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	9e-05
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-04
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	1e-04
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-04
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	1e-04
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	1e-04
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-04
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-04
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	1e-04
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	1e-04
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	2e-04
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	2e-04
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	2e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	2e-04
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-04
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-04
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-04
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-04
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	3e-04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	3e-04
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-04
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	3e-04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-04
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	3e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	3e-04
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-04
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	4e-04
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	4e-04
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	4e-04
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	4e-04
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-04
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	4e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-04
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-04
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	5e-04
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-04
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	5e-04
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	5e-04
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	5e-04
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-04
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	6e-04
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	6e-04
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	6e-04
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	7e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	7e-04
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	7e-04
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	8e-04
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	8e-04

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 46.6 bits (111), Expect = 6e-09
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          GSPA+ S L++ DEI+ +N   F    +  E    + 
Sbjct: 38 GSPAEFSQLQVDDEIIAINNTKF-SYNDSKEWEEAMA 73

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 44.3 bits (105), Expect = 6e-08
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A+++ L +GD+I EVNG +  ++      +  +
Sbjct: 46 GSSAERAGLCVGDKITEVNGLSL-ESTTMGSAVKVL 80

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 43.8 bits (104), Expect = 7e-08
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A +S L  GD ++ ++G    D   H E    I
Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNT-DTMTHLEAQNKI 69

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 45.7 bits (108), Expect = 7e-08
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G  AD   L++GDEI+ +NG +   +C H EVI  I
Sbjct: 120 GGQADSVGLQVGDEIVRINGYSIS-SCTHEEVINLI 154

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 43.8 bits (104), Expect = 7e-08
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          GSPAD   L  GD+IL VN    K   +H +V+  I 
Sbjct: 33 GSPADFVGLRAGDQILAVNEINVK-KASHEDVVKLIG 68

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 44.4 bits (105), Expect = 9e-08
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A+ S L++GD+ILEVNG++F  N  H+E +  +
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSF-LNILHDEAVRLL 90

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 43.9 bits (104), Expect = 1e-07
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          GS A  ++L  GD IL ++G    ++  H +    I 
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGT-ESMTHADAQDRIK 74

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 43.9 bits (104), Expect = 1e-07
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          GS A+K  L +GD+IL VN K+      H E +
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSL-ARVTHAEAV 76

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 43.0 bits (102), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A  +DL  GD I+ +NG++  +   H E  + I
Sbjct: 36 RGKAKDADLRPGDIIVAINGESA-EGMLHAEAQSKI 70

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 43.5 bits (103), Expect = 1e-07
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
           S A ++ L+ GD++L VN   F  +  H++ +
Sbjct: 51 DSDAHRAGLQEGDQVLAVNDVDF-QDIEHSKAV 82

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 43.0 bits (102), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A  + L  GD I  +NG++  +   H E    I
Sbjct: 42 GSKAALAALCPGDLIQAINGEST-ELMTHLEAQNRI 76

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA+K+ L  GD ++EVNG+  +    H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVE-KETHQQVVSRI 71

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA +S L   D ++EVNG+  +    H EV+  I
Sbjct: 38 GSPAARSGLRAQDRLIEVNGQNVE-GLRHAEVVASI 72

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 42.6 bits (101), Expect = 2e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A ++++ IGD +L ++G        H E    I
Sbjct: 37 GGKAAQANVRIGDVVLSIDGINA-QGMTHLEAQNKI 71

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A ++ + +GD +L ++G+    +  H E    I
Sbjct: 37 GGKAAQAGVAVGDWVLSIDGENA-GSLTHIEAQNKI 71

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A ++ + IGD +L ++G +      H E    I
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISA-QGMTHLEAQNKI 73

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 42.7 bits (101), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          G  A K+ ++ GD I++VNG     N +H EV+  I 
Sbjct: 39 GGAAMKAGVKEGDRIIKVNGTMVT-NSSHLEVVKLIK 74

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 42.9 bits (101), Expect = 3e-07
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          GS + +  LEIGD+I+EVNG  F  N +H E +
Sbjct: 51 GSLSAEVGLEIGDQIVEVNGVDFS-NLDHKEAV 82

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          GS A  ++L IGD I  ++G+    N  H E    I 
Sbjct: 37 GSKAALANLCIGDVITAIDGENT-SNMTHLEAQNRIK 72

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 42.4 bits (100), Expect = 3e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          GSPA ++ L  GD I  +NG++      H +V+  + 
Sbjct: 44 GSPAQEAGLRAGDLITHINGESV-LGLVHMDVVELLL 79

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A+ +DL  GD I+ +NG++  +N  H E  + I
Sbjct: 40 RGKAEAADLRPGDIIVAINGQSA-ENMLHAEAQSKI 74

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 41.9 bits (99), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD + LE  D I+EVNG     +  + +V+  I
Sbjct: 37 GGPADLAGLEDEDVIIEVNGVNVL-DEPYEKVVDRI 71

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 42.0 bits (99), Expect = 4e-07
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA  + L  GD I  VNG    +   H E++  I
Sbjct: 47 SSPAQLAGLTPGDTIASVNGLNV-EGIRHREIVDII 81

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A ++ +   D ++EVNG+  + + +H EV+  +
Sbjct: 42 QGVAMRAGVLADDHLIEVNGENVE-DASHEEVVEKV 76

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 42.1 bits (99), Expect = 5e-07
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
           SPA  + L+ GD +  +NG +  +   + +V+  I  
Sbjct: 58 DSPAHCAGLQAGDVLANINGVST-EGFTYKQVVDLIRS 94

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA+ + L+  D ++ VNGK+ +   +H+ V+  I
Sbjct: 40 GSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMI 74

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 41.6 bits (98), Expect = 6e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA+ S L   D I+EVNG   +    H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAI 77

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 41.6 bits (98), Expect = 6e-07
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PA+++ L+  D +L++N +  + +    E+   I
Sbjct: 34 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEI 68

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.1 bits (99), Expect = 6e-07
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A ++ LE GD++LE NG   + +    +    I
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLR-SATEQQARLII 86

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 41.6 bits (98), Expect = 6e-07
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PA+++ L+  D +L++N +  + +    E+   I
Sbjct: 46 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEI 80

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 41.7 bits (98), Expect = 7e-07
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28 LYGSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIH 66
            G+PAD     L  GD+++ +NG+       H++V+  I 
Sbjct: 51 APGTPADLCVPRLNEGDQVVLINGRDI-AEHTHDQVVLFIK 90

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 41.7 bits (98), Expect = 8e-07
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
             A  +  + GD I+ + G   K     +EV+  + 
Sbjct: 46 HCSASLAGAKEGDYIVSIQGVDCK-WLTVSEVMKLLK 81

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 41.7 bits (98), Expect = 8e-07
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA K  LE GD+IL VN   F  N    E +  +
Sbjct: 61 DSPAAKEGLEEGDQILRVNNVDFT-NIIREEAVLFL 95

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 41.2 bits (97), Expect = 8e-07
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PA K+ ++ GD ++ V G++ +    H E ++ I
Sbjct: 40 GLPAKKAGMQAGDRLVAVAGESVE-GLGHEETVSRI 74

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 30 GSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          G+PAD     L  GD+++ +NG+       H++V+  I 
Sbjct: 51 GTPADLCVPRLNEGDQVVLINGRDI-AEHTHDQVVLFIK 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 40.8 bits (96), Expect = 1e-06
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            P D   L+  D +L+VN      + +   V+  I
Sbjct: 42 AGPGDLGGLKPYDRLLQVNHVRT-RDFDCCLVVPLI 76

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 41.4 bits (97), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G PA ++ L  GD I++VNG++      +++VI  I
Sbjct: 71  GGPAFEAGLCTGDRIIKVNGESV-IGKTYSQVIALI 105

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 40.6 bits (95), Expect = 2e-06
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 12 KGYCIIIAETPDG-KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
          KG+   IA++P G KVK+         L+ GD I E+  +  + N  H +V+  +  
Sbjct: 23 KGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQ-NLTHLQVVEVLKQ 78

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 40.0 bits (94), Expect = 3e-06
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA+ + L+  D ++ VNGK+ +   +H+ V+  I
Sbjct: 39 GSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMI 73

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA+K+ L  GD +L +NG    D   H +V+  +
Sbjct: 36 GSPAEKAGLLDGDRVLRINGVFV-DKEEHAQVVELV 70

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 40.2 bits (94), Expect = 3e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A  +    GD I+ +     K     +EV+  +
Sbjct: 54 YCSASVAGAREGDYIVSIQLVDCK-WLTLSEVMKLL 88

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 39.6 bits (93), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  AD+++ L +GD IL VNG+    +  H+E +  +
Sbjct: 40 GLAADQTEALFVGDAILSVNGEDL-SSATHDEAVQAL 75

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 39.8 bits (93), Expect = 4e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          GSPA+K+ L  GD +L +NG    D   H +V+
Sbjct: 48 GSPAEKAGLLDGDRVLRINGVFV-DKEEHAQVV 79

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 39.2 bits (91), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
             A K  L+ GDEILE+N +      N + +   +  PS
Sbjct: 45 TGLASKKGLKAGDEILEINNRAADA-LNSSMLKDFLSQPS 83

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 39.4 bits (92), Expect = 6e-06
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          G  A ++ L +GD ++EVNG+       H +V+  I 
Sbjct: 55 GGVAWRAGLRMGDFLIEVNGQNV-VKVGHRQVVNMIR 90

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 39.0 bits (91), Expect = 6e-06
 Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
          G  A++  + +G  I+E+NG++      H +++  + +
Sbjct: 41 GGIAERGGVRVGHRIIEINGQSV-VATPHEKIVHILSN 77

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 39.3 bits (92), Expect = 6e-06
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD+   L +GD IL VNG     +  H E +T +
Sbjct: 45 GQPADRCGGLHVGDAILAVNGVNL-RDTKHKEAVTIL 80

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 39.3 bits (92), Expect = 6e-06
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA ++ + +GD++LEVNG        H+E +  +
Sbjct: 56 EGPAARAGVRVGDKLLEVNGVAL-QGAEHHEAVEAL 90

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 38.9 bits (91), Expect = 6e-06
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G   D    + +GD I  +NG+       H +V   +
Sbjct: 38 GGVIDSVKTICVGDHIESINGENIV-GWRHYDVAKKL 73

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 38.9 bits (91), Expect = 7e-06
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 12 KGYCIIIAETPDGK-VKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          +G+   IA++P G+ VK          L  GD I+E+N +  + N +H EV+  +
Sbjct: 21 QGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ-NLSHTEVVDIL 74

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 38.8 bits (91), Expect = 8e-06
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA ++ + +GD++LEVNG        H+E +  +
Sbjct: 44 EGPAARAGVRVGDKLLEVNGVAL-QGAEHHEAVEAL 78

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.1 bits (93), Expect = 9e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA+ S L   D I+EVNG   +    H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAI 77

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A +   L+  D+IL +NG+       H + I+ +
Sbjct: 59 GSVAHRDGRLKETDQILAINGQALDQTITHQQAISIL 95

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G    +   L +GDEI E+NG +   N    ++ 
Sbjct: 35 GGMIHRQGTLHVGDEIREINGISVA-NQTVEQLQ 67

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA+ S L   D I+EVNG    +   H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCM-EGKQHGDVVSAI 77

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G  A ++ L +GD ++EVNG+       H +V+  I
Sbjct: 75  GGVAWRAGLRMGDFLIEVNGQNV-VKVGHRQVVNMI 109

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
           SPA K  LE GD+IL VN   F  N    E +
Sbjct: 41 DSPAAKEGLEEGDQILRVNNVDF-TNIIREEAV 72

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 39.0 bits (91), Expect = 1e-05
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA    L  GD++L++NG+      + ++    +
Sbjct: 37 NSPASLVGLRFGDQVLQINGENC-AGWSSDKAHKVL 71

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 12 KGYCIIIAETPDGK---VKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G+   IA++P G    VK          L+ GD I+EVN K  +    HN+V+  +
Sbjct: 14 MGFGFTIADSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQ-ALTHNQVVDML 69

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA++   L+IGD ++ +NG    ++    E    + D S
Sbjct: 55 DSPAERCGVLQIGDRVMAINGIPT-EDSTFEEANQLLRDSS 94

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
             A K  L+ GDEILE+N +      N + +   +  PS
Sbjct: 54 TGLASKKGLKAGDEILEINNRAADA-LNSSMLKDFLSQPS 92

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD S +L  GD+IL VNG   + N +H +    +
Sbjct: 45 GGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIAL 80

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD S +L  GD+IL VNG   + N +H +    +
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIAL 83

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 23 DGKVK--LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          +GK+   +  S A ++ L     I E+NG+        +++   +
Sbjct: 24 NGKITSIVKDSSAARNGLLTEHNICEINGQNVI-GLKDSQIADIL 67

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 37.8 bits (88), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A     L++G  ILEVNG T +    H E    I
Sbjct: 42 GGSAHNCGQLKVGHVILEVNGLTLR-GKEHREAARII 77

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A++S  ++ GD IL VN +    + +++  +
Sbjct: 36 GGAAEQSGLIQAGDIILAVNDRPLV-DLSYDSAL 68

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD S +L  GD IL VNG   + N  H +    +
Sbjct: 49 GGPADLSGELRRGDRILSVNGVNLR-NATHEQAAAAL 84

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 37.8 bits (88), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD+   L +GD IL VNG     +  H E +T +
Sbjct: 63 GQPADRCGGLHVGDAILAVNGVNL-RDTKHKEAVTIL 98

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 38.1 bits (88), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G PA+ + L+IGD+I++VNG        H++    +
Sbjct: 74  GGPAEIAGLQIGDKIMQVNGWDMT-MVTHDQARKRL 108

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 36.9 bits (86), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           S A +  +++ GD +L++NG    +N +  +  T I
Sbjct: 31 DSLAARDGNIQEGDVVLKINGTVT-ENMSLTDAKTLI 66

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 37.3 bits (87), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G    +   L +GDEILE+NG     N + +++   + +  
Sbjct: 46 GGMIHRQGSLHVGDEILEINGTNVT-NHSVDQLQKAMKETK 85

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           S  D+S  L  GD IL ++G +  ++C+  E    +   S
Sbjct: 52 ASVVDRSGALHPGDHILSIDGTSM-EHCSLLEATKLLASIS 91

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G  A +   L + D IL VN         H+  +  + +  
Sbjct: 45 GGAAAQDGRLRVNDSILFVNEVDV-REVTHSAAVEALKEAG 84

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G  A K   L+IGD+IL VN     ++  H + +  +
Sbjct: 140 GGAAHKDGRLQIGDKILAVNSVGL-EDVMHEDAVAAL 175

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
             A +   ++ G+E+L +NGK+ K    H++ +  +    
Sbjct: 52 NGLASQEGTIQKGNEVLSINGKSLK-GTTHHDALAILRQAR 91

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA K+  L+ GD+ILEV+G   + N +H+E +  I
Sbjct: 60 DSPAGKTNALKTGDKILEVSGVDLQ-NASHSEAVEAI 95

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G  AD+S  + +GDE+ EVNG   + +    E+I
Sbjct: 38 GGAADRSGLIHVGDELREVNGIPVE-DKRPEEII 70

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 38.2 bits (88), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 30  GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           G  AD+++ L +GD IL VNG+    +  H+E +  +    
Sbjct: 113 GLAADQTEALFVGDAILSVNGEDLS-SATHDEAVQALKKTG 152

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
          GS AD+   L+  D+IL +N      N +H + I 
Sbjct: 64 GSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 37.0 bits (86), Expect = 5e-05
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA K+  L+ GD I+EV+G   + + +H + +  I
Sbjct: 49 DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAI 84

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G  A +SD L++GD I  VNG        H+E+I+ + +  
Sbjct: 43 GGIAARSDQLDVGDYIKAVNGINL-AKFRHDEIISLLKNVG 82

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
           G PAD+   ++ GD +L V+G        H E +
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRL-LGTTHAEAM 177

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 36.5 bits (85), Expect = 6e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  AD+   L+ GD++L VNG + +    H + +  +
Sbjct: 40 GGVADRHGGLKRGDQLLSVNGVSVE-GEQHEKAVELL 75

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA++   L+IGD ++ +NG   + +    E    + D S
Sbjct: 46 DSPAERCGVLQIGDRVMAINGIPTE-DSTFEEANQLLRDSS 85

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 37.1 bits (86), Expect = 9e-05
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
           GS A ++  LE+GD++L ++     D+C+  + +
Sbjct: 145 GSVAHRTGTLELGDKLLAIDNIRL-DSCSMEDAV 177

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 38.0 bits (87), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA K  LE GD+IL VN   F  N    E +  + D  
Sbjct: 33 DSPAAKEGLEEGDQILRVNNVDF-TNIIREEAVLFLLDLP 71

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 36.2 bits (84), Expect = 7e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           S A +  +++ GD +L++NG    +N +  +  T I    
Sbjct: 33 DSLAARDGNIQEGDVVLKINGTVT-ENMSLTDAKTLIERSK 72

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 36.8 bits (85), Expect = 8e-05
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A++S  ++ GD IL VN +    + +++  +
Sbjct: 43 GGAAEQSGLIQAGDIILAVNDRPLV-DLSYDSAL 75

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 36.0 bits (84), Expect = 8e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G PAD+   ++ GD +L V+G        H E ++ +
Sbjct: 42 GGPADREGTIKPGDRLLSVDGIRLL-GTTHAEAMSIL 77

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 36.7 bits (85), Expect = 9e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
           G  A  +  L + DE+LEVNG       + ++V 
Sbjct: 75  GGLAQSTGLLAVNDEVLEVNGIEVS-GKSLDQVT 107

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 36.3 bits (84), Expect = 9e-05
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           +PA     +  GDEI  VNG++ K      EV   I
Sbjct: 60 NTPAALDGTVAAGDEITGVNGRSIK-GKTKVEVAKMI 95

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 36.1 bits (84), Expect = 9e-05
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
           SP+ +  ++ GD I++VNG+   D
Sbjct: 45 NSPSQRGGIQDGDIIVKVNGRPLVD 69

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           +PA     +  GDEI  VNG++ K      EV   I
Sbjct: 55 NTPAALDGTVAAGDEITGVNGRSIK-GKTKVEVAKMI 90

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVIT 63
          G   +    L+ GD I + NG   +          
Sbjct: 41 GQYPEIDSKLQRGDIITKFNGDALE-GLPFQVSYA 74

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           GS AD    L  GDE+LE NG+  +      EV   I
Sbjct: 75  GSLADTVGHLRPGDEVLEWNGRLLQ-GATFEEVYNII 110

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA K   L+I D I+EVNG+       H++ +   
Sbjct: 51 SGPAAKEGGLQIHDRIIEVNGRDLS-RATHDQAVEAF 86

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 35.7 bits (83), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA     L++GD IL +NGK  + N     VI  I
Sbjct: 47 DSPAHLCGRLKVGDRILSLNGKDVR-NSTEQAVIDLI 82

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A+KS  L  GDE+LE+NG       + NEV 
Sbjct: 58 GGAAEKSGLLHEGDEVLEINGIEI-RGKDVNEVF 90

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 30  GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
            SPA K+  L+ GD I+EV+G   + + +H + +  I
Sbjct: 69  DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAI 104

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 35.4 bits (82), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A+++  + IGD IL +N  + K     +E I
Sbjct: 40 GGLAERTGAIHIGDRILAINSSSLK-GKPLSEAI 72

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G   +    L+ GD I + NG   +            
Sbjct: 35 GQYPEIDSKLQRGDIITKFNGDALE-GLPFQVCYALF 70

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 20 ETPDGKV---KLY-GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
          ++P GKV    +Y G  A++   +  GDEI+ +NGK    +    E  
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT-DYTLAEAE 85

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A+++  L  G ++LE NG     +  + EV 
Sbjct: 59 GGSAEQTGKLMEGMQVLEWNGIPLT-SKTYEEVQ 91

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
            SPA+ + L+ GD I ++N      
Sbjct: 292 NSPAELAGLKAGDIITQINDTKITQ 316

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
          GSPA ++ L  GD IL +  +  ++
Sbjct: 45 GSPAHRAGLRPGDVILAIGEQMVQN 69

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA ++  + +GD+I+E+NG++   +  H   I  I
Sbjct: 46 DGPAIRNGRMRVGDQIIEINGEST-RDMTHARAIELI 81

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
            S A K+ ++ GD I  +NGK    
Sbjct: 296 NSSAAKAGIKAGDVITSLNGKPISS 320

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
           GS + K+ ++ GD I  +NGK    
Sbjct: 273 GSGSAKAGVKAGDIITSLNGKPLNS 297

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA++S  + IGDEILE+NG+T K N  H+  I  I
Sbjct: 59 DGPAERSGKMRIGDEILEINGETTK-NMKHSRAIELI 94

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA K  L+ GD+I++ NG +F  N  H + ++ +
Sbjct: 53 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLL 86

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A+    +  GD +L VNG + +    H + +  +
Sbjct: 52 QGAAESDGRIHKGDRVLAVNGVSLE-GATHKQAVETL 87

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA K  L+ GD+I++ NG +F  N  H + ++ +
Sbjct: 45 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLL 78

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
          G PA++S  L IGD +  +NG +             + +
Sbjct: 47 GGPAERSGALSIGDRLTAINGTSL-VGLPLAACQAAVRE 84

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
          GSPAD+   L++GD IL VNG++   N  H +++  I D
Sbjct: 53 GSPADRCAKLKVGDRILAVNGQSI-INMPHADIVKLIKD 90

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
           GSPA ++ L  GD IL +  +  ++
Sbjct: 266 GSPAHRAGLRPGDVILAIGEQMVQN 290

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA +   LE+GD +L +NG++      H + +  I
Sbjct: 48 DGPAQRCGRLEVGDLVLHINGEST-QGLTHAQAVERI 83

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A ++  L++GD +L +NG        H+  ++ +
Sbjct: 48 GGAAHRAGTLQVGDRVLSINGVDVT-EARHDHAVSLL 83

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          G PA+   L+  D +  VNG +  DN  H   +
Sbjct: 49 GGPAEGQ-LQENDRVAMVNGVSM-DNVEHAFAV 79

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVIT 63
          G    +   ++ GD +L V+G       + +E + 
Sbjct: 63 GGVISRDGRIKTGDILLNVDGVEL-TEVSRSEAVA 96

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
           GS + K+ ++ GD I  +NGK    
Sbjct: 273 GSGSAKAGVKAGDIITSLNGKPLNS 297

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 34.7 bits (80), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
             A +   L +G  +LEVN ++      H E +
Sbjct: 54 TGAAGRDGRLRVGLRLLEVNQQSL-LGLTHGEAV 86

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
            +PA+   L+  D I+ +NG++   
Sbjct: 264 DTPAEAGGLKENDVIISINGQSVVS 288

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
             A +   L  GD+ILEVNG   + N +H E IT +    
Sbjct: 53 EGAAARDGRLWAGDQILEVNGVDLR-NSSHEEAITALRQTP 92

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKD 54
             PA  + +++ D I+ V+ K    
Sbjct: 254 DGPAANAGIQVNDLIISVDNKPAIS 278

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A +   L   D +L +NG   K           I
Sbjct: 39 GGLAAQDGRLSSNDRVLAINGHDLK-YGTPELAAQII 74

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A K  +L  GD IL++NG    +N +  +    I
Sbjct: 31 TGLATKDGNLHEGDIILKINGTVT-ENMSLTDARKLI 66

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A  S  +  GDE++ +NG       +  E +  I
Sbjct: 45 GGKAALSQKMRTGDELVNINGTPLYG--SRQEALILI 79

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 34.3 bits (79), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A    L  GD+IL++N +  +D  +    +  +
Sbjct: 41 GGSAHGK-LFPGDQILQMNNEPAED-LSWERAVDIL 74

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           G  A +   L + D IL VN         H+  +  + +  
Sbjct: 99  GGAAAQDGRLRVNDSILFVNEVDV-REVTHSAAVEALKEAG 138

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
             AD+   L  GDE++ V+G        H  VI
Sbjct: 44 MGSADRDGRLHPGDELVYVDGIPVA-GKTHRYVI 76

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A K   L  GD+ILEVNG   +    H+E I  +
Sbjct: 40 EGAACKDGRLWAGDQILEVNGIDLR-KATHDEAINVL 75

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A +   +++ D+I+EV+G +       N   T +
Sbjct: 50 GGAAQRDGRIQVNDQIVEVDGISLV-GVTQNFAATVL 85

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30  GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           G  A++  + +G  I+E+NG++      H +++  +
Sbjct: 325 GGIAERGGVRVGHRIIEINGQSV-VATAHEKIVQAL 359

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
             AD    L  GDE++ V+G       +H  V+ 
Sbjct: 37 LGAADTDGRLRSGDELISVDGTPVI-GKSHQLVVQ 70

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A+    +  GD +L VNG + +    H + +  +
Sbjct: 43 QGAAESDGRIHKGDRVLAVNGVSLE-GATHKQAVETL 78

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 33.8 bits (78), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
             A     L+ GD+IL VNG+  K N  H + +
Sbjct: 47 NGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAV 79

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 34.3 bits (79), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
            PA     + IGDE+LE+N +      +H      I
Sbjct: 61 EGPAAADGRMRIGDELLEINNQILY-GRSHQNASAII 96

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 34.2 bits (79), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GSPA     L +GD ILEVNG +      +   +  I
Sbjct: 46 GSPAAADGRLSLGDRILEVNGSSLL-GLGYLRAVDLI 81

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 34.3 bits (79), Expect = 7e-04
 Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
          GS A  +  +++ D+I+ V+G        +++V+
Sbjct: 56 GSAAYHNGHIQVNDKIVAVDGVNI-QGFANHDVV 88

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 33.8 bits (77), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCN-HNEVITHIHDPS 69
           S A ++ +  G E+  V+G    D      +++  I D S
Sbjct: 12 NSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDES 52

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 30  GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
           G   +    L+ GD I + NG    +         
Sbjct: 146 GQYPEIDSKLQRGDIITKFNGDAL-EGLPFQVCYA 179

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 33.9 bits (78), Expect = 8e-04
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A ++  L +GD I+ + G +  +   H + +  +
Sbjct: 63 TGVAAQTQKLRVGDRIVTICGTST-EGMTHTQAVNLL 98

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 33.7 bits (77), Expect = 8e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 10 DLKGYCIIIAETPDGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKD 54
          ++  Y  +     D KV  Y           +   L+ GD  + +NG    D
Sbjct: 20 EIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.51
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.46
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.43
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.42
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.42
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.41
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.41
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.4
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.39
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.37
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.35
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.35
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.34
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.33
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.33
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.32
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.32
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.32
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.32
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.32
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.31
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.31
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.31
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.3
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.3
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.3
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.29
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.29
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.28
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.28
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.28
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.27
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.27
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.27
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.27
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.27
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.27
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.27
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.27
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.26
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.26
2ego_A	96	General receptor for phosphoinositides 1- associat	99.26
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.26
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.26
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.26
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.25
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.25
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.25
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.25
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.25
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.24
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.24
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.24
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.24
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.23
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.23
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.23
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.23
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.23
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.23
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.23
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.22
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.22
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.22
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.22
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.21
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.21
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.21
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.21
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.21
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.21
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.21
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.21
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.21
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.21
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.21
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.21
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.2
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.2
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.2
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.2
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.2
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.2
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.2
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.2
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.19
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.19
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.19
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.18
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.18
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.18
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.18
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.18
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.17
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.17
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.17
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.16
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.16
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.16
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.16
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.16
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.15
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.15
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.15
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.15
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.15
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.15
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.15
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.15
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.14
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.14
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.13
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.12
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.12
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.12
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.12
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.11
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.11
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.11
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.11
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.11
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.1
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.1
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.1
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.1
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.09
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.09
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.08
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.08
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.08
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.08
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.08
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.08
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.08
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.08
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.07
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.07
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.07
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.06
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.06
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.05
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.05
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.04
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.03
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.02
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.01
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.01
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.0
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.99
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.99
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.97
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.51
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.96
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.95
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.95
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.94
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.94
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.94
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.93
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.92
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.91
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.9
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.83
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.82
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.81
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.8
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.79
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.76
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.74
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.73
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.71
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.68
3k50_A	403	Putative S41 protease; structural genomics, joint	98.67
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.65
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.63
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.58
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.57
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.56
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.56
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.55
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.55
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.55
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.47
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.45
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.43
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.42
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.41
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.38
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.37
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.37
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.34
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.28
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.17
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.07
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.16
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.11
3dor_A	583	Protein CT_858, CPAF; mature CPAF, dimer, transfer	89.86
1yfb_A	59	Transition state regulatory protein ABRB; , homodi	82.5
1a62_A	130	RHO; transcription termination, termination, RNA b	81.57

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.51  E-value=3e-14  Score=84.47  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             CCceEec--cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          4 SPSHMID--LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         4 ~~~~~~~--~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+|.+  ..+|||.+.   ++.|  +.+|+||+++||++||+|++|||+++.+++ +++++++|+.
T Consensus         6 r~v~l~k~~~g~~Gf~i~---~g~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~-~~evv~llr~   69 (82)
T 1r6j_A            6 RTITMHKDSTGHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLK-DSQIADILST   69 (82)
T ss_dssp             EEEEEECCTTSCCCEEEE---TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEEEEECCCCCeEEEEE---CCEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence            3578877  346999984   3455  578999999999999999999999999999 9999999973

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.46  E-value=1.1e-13  Score=81.14  Aligned_cols=61  Identities=28%  Similarity=0.475  Sum_probs=51.1

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |++.+ ..||||.+....+  +.+   +.+||||+++||++||+|++|||+++.+++ ++++..+|+.
T Consensus         9 v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   75 (95)
T 3r68_A            9 VVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD-HDGVVEMIRK   75 (95)
T ss_dssp             EEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            66766 7899999977655  333   458999999999999999999999999998 8899998876

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.43  E-value=3.2e-13  Score=79.12  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+++.+ ..|+||.+.....-.|  +.+||||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus         6 ~v~l~~~~~g~G~~l~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~   70 (91)
T 2f5y_A            6 QITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK-CVELAHEIRS   70 (91)
T ss_dssp             EEEEECBTTBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEEeCCCCccEEEecCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            356666 7889998865433223  568999999999999999999999999998 8899888864

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.42  E-value=9.3e-13  Score=76.70  Aligned_cols=61  Identities=31%  Similarity=0.493  Sum_probs=51.1

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.+.+ ..|+||.+....+  +.+   +.+||||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus         8 v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   74 (90)
T 2he4_A            8 CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR-HAEVVASIKA   74 (90)
T ss_dssp             EEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSC-HHHHHHHHTT
T ss_pred             EEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            45555 7899999987654  333   468999999999999999999999999998 8899998865

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.42  E-value=1.1e-12  Score=76.36  Aligned_cols=62  Identities=29%  Similarity=0.509  Sum_probs=51.7

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      |.+.+ ..|+||.+....+  +.+   +.+||||+++||++||+|++|||+++.+++ ++++.++++..
T Consensus         7 v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~~   74 (91)
T 1g9o_A            7 CCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET-HQQVVSRIRAA   74 (91)
T ss_dssp             EEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             EEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            55666 7899999977653  332   468999999999999999999999999998 88999988753

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.41  E-value=6.6e-13  Score=81.65  Aligned_cols=62  Identities=13%  Similarity=0.005  Sum_probs=50.2

Q ss_pred             CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+ ..++||.+.....-.|  +.+||||++|||++||+|++|||+++.+|+ ++++.++|+.
T Consensus        26 ~v~l~k~~~~~G~~l~~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~-~~dv~~~i~~   90 (109)
T 2vsv_A           26 SIRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLT-LSEVMKLLKS   90 (109)
T ss_dssp             EEEECCGGGCCCEEEESSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEEeCCCceeEEEeCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            477777 5888988854332223  568999999999999999999999999997 8899988864

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.41  E-value=4.4e-13  Score=82.78  Aligned_cols=59  Identities=22%  Similarity=0.266  Sum_probs=46.6

Q ss_pred             Eec-cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MID-LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~-~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +++ ..||||.+.......+   +.+||||++|||++||+|++|||+++...+ .+++.+.|++
T Consensus        23 l~~~~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s-~~dv~~~i~~   85 (101)
T 3qik_A           23 ILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRP-FSEVESILNQ   85 (101)
T ss_dssp             ECCCSSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSC-HHHHHHHHHH
T ss_pred             EEeCCCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCC-HHHHHHHHHH
Confidence            444 7899999987544433   568999999999999999999999986444 5588877753

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.40  E-value=1.3e-12  Score=77.06  Aligned_cols=61  Identities=30%  Similarity=0.438  Sum_probs=50.4

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.+.+ ..|+||.+....+  +.+   +.++|||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus        13 ~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   79 (98)
T 2jxo_A           13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIRA   79 (98)
T ss_dssp             EEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            56666 7899999976553  333   468999999999999999999999999977 7799888864

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.39  E-value=9.4e-13  Score=77.46  Aligned_cols=62  Identities=24%  Similarity=0.474  Sum_probs=51.0

Q ss_pred             CceEec-cCCeEEEEEEcCC-----CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPD-----GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~-----~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+ ..|+||.+.....     +.+   +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus         6 ~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   76 (96)
T 2v90_A            6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLG-HEETVSRIQG   76 (96)
T ss_dssp             EEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            366777 7899999977432     122   468999999999999999999999999987 8899988865

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.37  E-value=9.7e-13  Score=79.82  Aligned_cols=64  Identities=23%  Similarity=0.325  Sum_probs=50.8

Q ss_pred             CCCceEeccC----CeEEEEEEcC-CC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          3 TSPSHMIDLK----GYCIIIAETP-DG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         3 ~~~~~~~~~~----g~~i~l~~~~-~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +-.|+|.+-+    +|||.+.... ++  .+    +.+||||++|||++||+|++|||+++.+++ ++++.+.+++
T Consensus         7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~-~~~l~~~l~~   81 (94)
T 3kzd_A            7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN-SSMLKDFLSQ   81 (94)
T ss_dssp             EEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCC-HHHHHHHHHS
T ss_pred             eeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhC
Confidence            4567888743    7899887643 21  22    468999999999999999999999999998 8899988865

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.7e-12  Score=76.08  Aligned_cols=61  Identities=16%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             ceEec--cCCeEEEEEEcCCCeE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAETPDGKV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~~~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +++.+  ..++|+.+....++.+    +.+||||++ +||++||+|++|||+++.+++ ++++.++|+.
T Consensus         5 V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~-~~~~~~~l~~   72 (88)
T 1kwa_A            5 VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT-VEQLQKMLRE   72 (88)
T ss_dssp             EEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSC-HHHHHHHHHH
T ss_pred             EEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            56665  4789999976433332    468999999 889999999999999999888 8899998864

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.35  E-value=5.3e-13  Score=76.75  Aligned_cols=61  Identities=30%  Similarity=0.438  Sum_probs=47.5

Q ss_pred             ceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +++.+ ..|+||.+.....-.|  +.+||||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus         6 v~l~~~~~g~G~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   69 (83)
T 2kv8_A            6 VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS-HEDVVKLIGK   69 (83)
T ss_dssp             EEECCCSSCCSCBCCCSSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCC-HHHHHHHHTT
T ss_pred             EEEEeCCCcccEEEEcCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            34444 6778877644322122  468999999999999999999999999998 8899988864

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.34  E-value=4.4e-12  Score=74.29  Aligned_cols=61  Identities=25%  Similarity=0.419  Sum_probs=49.7

Q ss_pred             ceEec-cCCeEEEEEEcC--CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETP--DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~--~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....  .+.+   +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus         8 v~l~k~~~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~   75 (93)
T 3o46_A            8 IRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKR-PEEIIQILAQ   75 (93)
T ss_dssp             EEEEESSSCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSC-HHHHHHHHHH
T ss_pred             EEEEeCCCCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            45555 678999987762  2332   46899999999 9999999999999998888 8899998864

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.33  E-value=5e-12  Score=74.35  Aligned_cols=59  Identities=25%  Similarity=0.363  Sum_probs=47.4

Q ss_pred             ceEec-cCCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          6 SHMID-LKGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      |.+.+ ..|+||.+... .+. |  +.+++||+++||++||+|++|||+++.+++ ..+++..++
T Consensus        12 v~l~~~~~~~G~~l~~~-~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~   74 (93)
T 2dls_A           12 VIIQKDQHGFGFTVSGD-RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS-HLEVVKLIK   74 (93)
T ss_dssp             EEEECSSSSCCEEEECS-SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSC-HHHHHHHHT
T ss_pred             EEEEeCCCceeEEEeCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhc
Confidence            44555 77899988653 333 3  568999999999999999999999999998 667877765

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.33  E-value=5.8e-12  Score=75.73  Aligned_cols=61  Identities=21%  Similarity=0.304  Sum_probs=50.0

Q ss_pred             ceEec-cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ +.|+||.+....+      +.+   +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        15 ~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~   86 (111)
T 2koj_A           15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKS-QEEVVSLLRS   86 (111)
T ss_dssp             EEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            34444 7899999987653      232   45899999999 9999999999999999998 8899988864

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.32  E-value=6.8e-12  Score=73.20  Aligned_cols=63  Identities=27%  Similarity=0.435  Sum_probs=50.4

Q ss_pred             CceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          5 PSHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|++.+ ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+++ +.++...++.+
T Consensus         6 ~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~~   81 (94)
T 2fe5_A            6 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVR-HEEAVASLKNT   81 (94)
T ss_dssp             EEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCB-HHHHHHHHHTC
T ss_pred             EEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            356655 7889999975322        222   46899999999 9999999999999999998 88998887643

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.32  E-value=7.6e-12  Score=71.97  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCCC---eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG---KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+.   .+   +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        10 ~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~   72 (85)
T 2i04_A           10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT-HAQVVKIFQS   72 (85)
T ss_dssp             TTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            67899988764332   22   46899999999 9999999999999999998 8899888864

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.32  E-value=4.9e-12  Score=73.19  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=47.3

Q ss_pred             ccCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         10 DLKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        10 ~~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ...++||.+....+   +.+   +.++|||+++||++||+|++|||+++.+++ ++++.++++..
T Consensus        10 ~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~~   73 (87)
T 2pa1_A           10 GPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGML-HAEAQSKIRQS   73 (87)
T ss_dssp             SSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCC-HHHHHHHHHTC
T ss_pred             CCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            46678888876543   222   468999999999999999999999999987 88999888653

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=3.9e-12  Score=74.15  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             ceEec-cCCeEEEEEEcC---CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETP---DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~---~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |++.+ ..|+||.+....   .+.+   +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus         9 v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   77 (93)
T 2dkr_A            9 VELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ-HEKAVELLKA   77 (93)
T ss_dssp             EEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            66766 889999997532   2232   46899999996 9999999999999999998 8899888753

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.32  E-value=8.6e-12  Score=76.58  Aligned_cols=62  Identities=29%  Similarity=0.418  Sum_probs=51.5

Q ss_pred             CceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+ ..||||.+....+  +.+   +.++|||+++||++||+|++|||+++.+++ ++++..+|+.
T Consensus        12 ~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   79 (128)
T 2kjd_A           12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIRA   79 (128)
T ss_dssp             EEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            467777 7999999987653  333   468999999999999999999999999977 7798888764

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.31  E-value=1.4e-12  Score=76.17  Aligned_cols=62  Identities=29%  Similarity=0.407  Sum_probs=49.8

Q ss_pred             CceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+ .+|+||.+.....  +.+   +.+||||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus         6 ~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   73 (91)
T 2vsp_A            6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP-YEKVVDRIQS   73 (91)
T ss_dssp             EEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSC-HHHHHHHHTT
T ss_pred             EEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            366766 6788888865432  222   468999999999999999999999999777 8899998865

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.31  E-value=9e-12  Score=73.46  Aligned_cols=59  Identities=25%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             EeccCC-eEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MIDLKG-YCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~~~g-~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++.+ +||.+....+   +.+   +.+|+||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        11 l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~   77 (97)
T 1n7e_A           11 LKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP-LSEAIHLLQM   77 (97)
T ss_dssp             EECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            444444 9999977653   332   46899999999 9999999999999999998 8899988863

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.31  E-value=6.9e-12  Score=74.35  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=49.7

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |++.+ ..|+||.+....+  +.+   +.+||||+++| |++||+|++|||+++.+++ ..++...++.
T Consensus        15 v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~   82 (104)
T 3i4w_A           15 IVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN   82 (104)
T ss_dssp             EEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             EEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            45555 6799999987665  333   46899999999 9999999999999999998 8888887764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.30  E-value=6.6e-12  Score=75.52  Aligned_cols=56  Identities=23%  Similarity=0.365  Sum_probs=47.3

Q ss_pred             cCCeEEEEEEcCC---------------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---------------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....+               +.+   +.+||||+++||++||+|++|||+++.+|+ ++++..+++.
T Consensus        18 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~   91 (109)
T 1q3o_A           18 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG-HRQVVNMIRQ   91 (109)
T ss_dssp             TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5789999987654               223   468999999999999999999999999998 8899988753

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.30  E-value=5.1e-12  Score=73.26  Aligned_cols=61  Identities=31%  Similarity=0.564  Sum_probs=48.3

Q ss_pred             CceEec-cCCeEEEEEEcCC--CeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPD--GKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+ ..|+||.+....+  +.+  .+++|||+ +||++||+|++|||+++.+++ ++++.+.++.
T Consensus         6 ~v~l~k~~~g~G~~~~~~~~~~~~~v~~v~~spA~-aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~   71 (88)
T 3bpu_A            6 TVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRS-RGLKEGDLIVEVNKKNVQALT-HNQVVDMLVE   71 (88)
T ss_dssp             EEEEECBTTBSSCEEEECTTSSSEEEEECCC--CC-TTCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred             EEEEEcCCCceeEEEEecCCCCcEEEEEecCChhH-hCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence            467777 7899999987643  223  24899999 999999999999999999998 8899988863

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.30  E-value=1.1e-11  Score=71.98  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             eEec-cCCeEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-LKGYCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+ ..|+||.+....+   +.+   +.++|||+++| |++||+|++|||+++.+++ ++++...++.
T Consensus         7 ~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~   74 (90)
T 2q9v_A            7 FLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS-HQLVVQLMQQ   74 (90)
T ss_dssp             EEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            3444 7889999876432   222   46899999999 9999999999999998887 8898887753

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.29  E-value=1.6e-11  Score=72.21  Aligned_cols=57  Identities=30%  Similarity=0.406  Sum_probs=48.1

Q ss_pred             cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+    +.+   +.++|||+++| |++||+|++|||+++.+++ ++++...++..
T Consensus        14 ~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~~   78 (98)
T 2opg_A           14 RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT-HDEAINVLRQT   78 (98)
T ss_dssp             TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            6789999987653    332   46899999999 9999999999999999998 88998887643

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=3.4e-12  Score=75.87  Aligned_cols=61  Identities=28%  Similarity=0.475  Sum_probs=50.2

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |++.+ ..|+||.+....+  +.+   +.+||||+++||++||+|++|||+++.++. ++++.++++.
T Consensus        10 v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   76 (102)
T 2d90_A           10 VVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD-HDGVVEMIRK   76 (102)
T ss_dssp             EEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred             EEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            56666 7899999986542  333   358999999999999999999999999988 8898888753

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=5.3e-12  Score=76.15  Aligned_cols=61  Identities=26%  Similarity=0.371  Sum_probs=50.8

Q ss_pred             ceEec-cCCeEEEEEEcCCC-----eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPDG-----KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~~-----~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ -.|+||.+....+.     .|  +.+++||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        10 v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~   79 (103)
T 1ufx_A           10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE-HREAARIIAE   79 (103)
T ss_dssp             EEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCB-HHHHHHHHHH
T ss_pred             EEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHH
Confidence            44555 67999999876543     23  46899999999 9999999999999999988 9999998864

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.28  E-value=1e-11  Score=71.80  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             ccCCeEEEEEEcCC-C-eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPD-G-KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~-~-~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ...++||.+....+ . .+    +.+||||+++||++||+|++|||+++.+|+ ++++..+++.
T Consensus        11 ~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~   73 (88)
T 2uzc_A           11 GPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT-HLEAQNKIKG   73 (88)
T ss_dssp             SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            45788888875432 2 22    468999999999999999999999999998 8899888764

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=2.6e-12  Score=76.60  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=46.4

Q ss_pred             eEec-cCCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-LKGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+ +.|+||.+... .+. |  +.+++||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus        20 ~l~~~~~g~G~~~~~~-~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~   82 (100)
T 1whd_A           20 TIRRGKDGFGFTICCD-SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK-CVELAHEIRS   82 (100)
T ss_dssp             EEECCSSSSSCBCCCS-SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEECCCCeeeEEEeCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            3434 57788776543 222 2  468999999999999999999999999998 8899888753

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.27  E-value=1.3e-11  Score=71.60  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             ccCCeEEEEEEcCC-C-eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPD-G-KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~-~-~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .-.++||.+....+ . .+    +.++|||+++||++||+|++|||+++.+++ ++++..+++.
T Consensus        11 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~   73 (89)
T 2q3g_A           11 GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLT-HIEAQNKIRA   73 (89)
T ss_dssp             SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCC-HHHHHHHHHT
T ss_pred             CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            35788888866432 2 22    468999999999999999999999999997 8899888764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=1.6e-11  Score=74.60  Aligned_cols=61  Identities=28%  Similarity=0.391  Sum_probs=49.4

Q ss_pred             ceEec-cC-CeEEEEEEcCCCeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LK-GYCIIIAETPDGKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~-g~~i~l~~~~~~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ .. |+||.+.....+.+   +.+|+||+++|| ++||+|++|||+++.+++ ++++.++|+.
T Consensus        29 v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~-~~~~~~~l~~   95 (113)
T 1va8_A           29 VRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD-VNEVFDLLSD   95 (113)
T ss_dssp             EEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            34444 44 89998877655543   468999999999 999999999999999988 8899988853

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.27  E-value=2.5e-11  Score=71.82  Aligned_cols=56  Identities=27%  Similarity=0.372  Sum_probs=46.9

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        17 ~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   84 (101)
T 2jik_A           17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL-HQDAVDLFRN   84 (101)
T ss_dssp             TTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHT
T ss_pred             CCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5789999987432        332   46899999999 9999999999999999998 8899888764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.27  E-value=2.5e-11  Score=71.17  Aligned_cols=56  Identities=18%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+      +.+   +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        15 ~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~   80 (96)
T 1d5g_A           15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT-HKQAVETLRN   80 (96)
T ss_dssp             SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCC-HHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            6789999875322      332   46899999999 9999999999999999998 8899988864

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.27  E-value=6.1e-12  Score=75.09  Aligned_cols=60  Identities=28%  Similarity=0.452  Sum_probs=47.5

Q ss_pred             ceEec--cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          6 SHMID--LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      |++.+  ..+|||.+....+  +.+   +.+||||+++||++||+|++|||+++.+++ ++++..+++
T Consensus         5 v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~   71 (106)
T 3ngh_A            5 SKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE-HAQVVELVR   71 (106)
T ss_dssp             EEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSC-HHHHHHHHH
T ss_pred             EEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            55555  2567777665543  333   468999999999999999999999999999 899988875

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.27  E-value=7.6e-12  Score=75.42  Aligned_cols=61  Identities=20%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             ceEec-cCCeEEEEEEcCC------CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD------GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~------~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....+      ..+    +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        19 v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~   91 (108)
T 2d92_A           19 VELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTS-LAEAVEILKA   91 (108)
T ss_dssp             EEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCC-HHHHHHHHHH
T ss_pred             EEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            34444 6799999876322      122    46899999999 9999999999999999988 9999998865

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=9.4e-12  Score=74.32  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             ceEec-cCCeEEEEEEcCC---Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD---GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~---~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....+   +. |  +.+++||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus        13 v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~   81 (103)
T 1uep_A           13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT-HRYVIDLMHH   81 (103)
T ss_dssp             CEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            34444 7889999876322   22 3  46899999999 9999999999999999988 8899888753

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.26  E-value=2.2e-11  Score=72.79  Aligned_cols=61  Identities=30%  Similarity=0.456  Sum_probs=49.3

Q ss_pred             ceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+.+ ++++...++.
T Consensus         7 v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   80 (105)
T 2awx_A            7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVT-HEEAVTALKN   80 (105)
T ss_dssp             EEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCB-HHHHHHHHHS
T ss_pred             EEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            44555 6799999986532        333   46899999999 9999999999999999988 8898888764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.26  E-value=1.6e-11  Score=73.39  Aligned_cols=62  Identities=24%  Similarity=0.356  Sum_probs=49.6

Q ss_pred             CceEec--cCCeEEEEEEcCCC---e-E--EecCChHhhcC--CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID--LKGYCIIIAETPDG---K-V--KLYGSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~--~~g~~i~l~~~~~~---~-i--v~~gspA~~aG--Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|.+.+  ..+|||.+....+.   . |  +.+||||+++|  |++||+|++|||+++.+|+ +++++.+|+.
T Consensus        20 ~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~-~~~~~~~i~~   91 (107)
T 3nfk_A           20 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLFIKA   91 (107)
T ss_dssp             EEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCC-HHHHHHHHHC
T ss_pred             EEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            355555  36899988764332   2 2  46899999999  9999999999999999999 8899988865

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.26  E-value=2.4e-11  Score=71.58  Aligned_cols=55  Identities=27%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             CCeEEEEEE-------cCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAE-------TPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~-------~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+|||.+..       ..+   +. |  +.++|||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus        16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~   83 (96)
T 2ego_A           16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIR-HREIVDIIKA   83 (96)
T ss_dssp             CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            588888875       111   11 2  468999999999999999999999999987 8899888754

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.26  E-value=8.2e-12  Score=78.29  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             cCCeEEEEEEcCCC---------------eE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG---------------KV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---------------~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....+.               .+   +.+||||+++||++||+|++|||+++.+++ +++++.+|++
T Consensus        38 ~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~~~~~l~~  111 (132)
T 3l4f_D           38 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG-HRQVVNMIRQ  111 (132)
T ss_dssp             TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSC-HHHHHHHHHH
T ss_pred             CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            57899999887652               23   468999999999999999999999999998 9999998864

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.26  E-value=1.9e-11  Score=71.05  Aligned_cols=55  Identities=22%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             CCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .++||.+.....  +.+   +.+||||+++||++||+|++|||+++.+++ ..++...++.
T Consensus        19 ~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   78 (91)
T 1m5z_A           19 EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFD-CCLVVPLIAE   78 (91)
T ss_dssp             SSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            478888876542  332   468999999999999999999999999998 7777776653

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.26  E-value=1.8e-11  Score=71.26  Aligned_cols=57  Identities=23%  Similarity=0.274  Sum_probs=46.4

Q ss_pred             ccCCeEEEEEEcCC--Ce--E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPD--GK--V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~--~~--i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ...++||.+....+  ..  |  +.++|||+++||++||+|++|||+++.+++ +.++..+++.
T Consensus        11 ~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   73 (91)
T 2pkt_A           11 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMT-HLEAQNRIKG   73 (91)
T ss_dssp             SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            35678888876543  12  2  468999999999999999999999999999 8888887764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2e-11  Score=72.56  Aligned_cols=56  Identities=25%  Similarity=0.477  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcC-----CCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP-----DGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~-----~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+....     .+. |  +.+++||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        21 ~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~   85 (104)
T 2djt_A           21 YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT-HAQAVERIRA   85 (104)
T ss_dssp             SSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            789999997632     222 2  46899999999 9999999999999999998 8898887753

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.25  E-value=1.3e-11  Score=74.44  Aligned_cols=56  Identities=21%  Similarity=0.372  Sum_probs=45.2

Q ss_pred             cCCeEEEEEEcCCCe-E---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGK-V---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~-i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++|+.+....++. +   +.+||||+++| |++||+|++|||+++.+++ .+++.++|+.
T Consensus        23 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~-~~~~~~~l~~   83 (97)
T 2ejy_A           23 EEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS-VDQLQKAMKE   83 (97)
T ss_dssp             SSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSC-SHHHHHHHHH
T ss_pred             CCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            467888887644433 3   46899999999 9999999999999999866 6688888764

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7e-12  Score=74.83  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      |++.+ ..|+||.+.....  +.+   +.++|||+++||++||+|++|||+++.+++ ++++...++
T Consensus        12 v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~   77 (106)
T 2eei_A           12 CYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDAS-HEEVVEKVK   77 (106)
T ss_dssp             EEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCC-HHHHHHHHH
T ss_pred             EEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            66666 7788998865433  333   458999999999999999999999999998 888887774

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.25  E-value=2e-11  Score=72.03  Aligned_cols=60  Identities=25%  Similarity=0.285  Sum_probs=47.3

Q ss_pred             ceEec-cCCeEEEEEEcCC----------C-eE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          6 SHMID-LKGYCIIIAETPD----------G-KV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~----------~-~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..+.+ -.||||.+.....          + .|  +.+||||+++||++||+|++|||+++.+++ ++++...++
T Consensus         6 v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~   79 (99)
T 3khf_A            6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLV-HMDVVELLL   79 (99)
T ss_dssp             EEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred             EEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence            34444 6788888875432          1 12  468999999999999999999999999888 889988876

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.25  E-value=1.4e-11  Score=70.73  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             ccCCeEEEEEEcCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         10 DLKGYCIIIAETPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        10 ~~~g~~i~l~~~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ...++||.+....+   +. |  +.+||||+++||++||+|++|||+++.+++ +.++...++.
T Consensus         9 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   71 (85)
T 1rgw_A            9 GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT-HLEAQNKIKS   71 (85)
T ss_dssp             CSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCC-HHHHHHHHTT
T ss_pred             CCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHHc
Confidence            35678888864332   22 3  468999999999999999999999999997 8899888764

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=2.5e-11  Score=72.96  Aligned_cols=61  Identities=28%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             ceEec-cCCeEEEEEEcC------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETP------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....      .+.+   +.++|||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus        12 v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   83 (110)
T 1um1_A           12 VELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG-YLRAVDLIRH   83 (110)
T ss_dssp             EEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC-HHHHHHHHHT
T ss_pred             EEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            44544 689999997742      2232   46899999999 9999999999999999888 8888888765

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.24  E-value=2.7e-11  Score=75.23  Aligned_cols=59  Identities=31%  Similarity=0.376  Sum_probs=47.7

Q ss_pred             eEeccCCeEEEEEEcCC-CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          7 HMIDLKGYCIIIAETPD-GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         7 ~~~~~~g~~i~l~~~~~-~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ...+..++||.+....+ +.+   +.++|||+++||++||+|++|||+++.+++ ++++...|+
T Consensus        34 ~~~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~~~~~l~   96 (124)
T 3tsv_A           34 KFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLL   96 (124)
T ss_dssp             EEECSSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCC-HHHHHHHHH
T ss_pred             EcCCCCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            34457788998876444 333   468999999999999999999999999997 778888765

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.24  E-value=1.2e-11  Score=75.09  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             ceEeccCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMIDLKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+..|+||.+....+     +.+   +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        19 v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~-~~~~~~~l~~   88 (109)
T 1wi4_A           19 ITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS-FEEAKSIITR   88 (109)
T ss_dssp             EEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCC-HHHHHHHHHH
T ss_pred             EEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            344557899999986432     222   46899999999 9999999999999999998 9999999864

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.24  E-value=3e-11  Score=74.38  Aligned_cols=56  Identities=23%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+.....      +.+   +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        40 ~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~l~~  105 (121)
T 2kom_A           40 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKS-QEEVVSLLRS  105 (121)
T ss_dssp             TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence            7789999876642      222   46899999999 9999999999999999998 8899888863

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.23  E-value=2e-11  Score=73.80  Aligned_cols=56  Identities=21%  Similarity=0.404  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCC----CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+    ..+    +.+||||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        16 ~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~   80 (108)
T 3cbz_A           16 YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS-NDDAVRVLRD   80 (108)
T ss_dssp             HCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCC-HHHHHHHHHH
T ss_pred             CCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5789998877532    222    46899999999 9999999999999999988 8899998863

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.23  E-value=1.9e-11  Score=72.30  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=45.7

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+|+.+.....+.+   +.+||||+++| |++||+|++|||+++.++. ++++..+++.
T Consensus        19 ~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~-~~~~~~~~~~   78 (96)
T 2qkv_A           19 GKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVSYALFKG   78 (96)
T ss_dssp             TBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            5678888766444443   46899999999 9999999999999999987 7788777754

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.23  E-value=1.4e-11  Score=75.64  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             ceEeccCCeEEEEEEcCC---CeE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          6 SHMIDLKGYCIIIAETPD---GKV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         6 ~~~~~~~g~~i~l~~~~~---~~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+.+..|+||.+....+   +.+    +.+|+||+++ ||++||+|++|||+++.+++ +++++++|+
T Consensus        22 ~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~-~~~~~~~l~   89 (118)
T 1v6b_A           22 LRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT-LAEAEAALQ   89 (118)
T ss_dssp             EEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB-HHHHHHHHH
T ss_pred             EEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            445556788888876532   223    4589999999 99999999999999999998 999988875

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=74.22  Aligned_cols=59  Identities=25%  Similarity=0.396  Sum_probs=48.0

Q ss_pred             eEec-cCCeEEEEEEcCC-CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          7 HMID-LKGYCIIIAETPD-GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~-~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+.+ ..|+||.+....+ +.+   +.+|+||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus        20 ~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~   84 (111)
T 2dlu_A           20 ELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMT-SEQVAQVLR   84 (111)
T ss_dssp             EEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSC-HHHHHHHHH
T ss_pred             EEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            3444 5788998876553 333   46899999999 9999999999999999998 889988775

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.23  E-value=2.6e-11  Score=71.20  Aligned_cols=60  Identities=22%  Similarity=0.393  Sum_probs=47.5

Q ss_pred             eEec-cCCeEEEEEEcCC------CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-LKGYCIIIAETPD------GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~------~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+ ..|+||.+....+      ..+    +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus         8 ~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~   79 (97)
T 2jil_A            8 TLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQ   79 (97)
T ss_dssp             EEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            3444 5688998876532      122    46899999999 9999999999999999977 8899888753

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.23  E-value=3.5e-11  Score=70.49  Aligned_cols=55  Identities=29%  Similarity=0.486  Sum_probs=43.3

Q ss_pred             cCCeEEEEEEcC---------CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETP---------DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~---------~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+||.+....         .+.+   +.+||||+++||++||+|++|||+++.+++ ..++...++
T Consensus        13 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~   79 (97)
T 2w4f_A           13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAE-HHEAVEALR   79 (97)
T ss_dssp             TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred             CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHh
Confidence            678899987532         2222   468999999999999999999999999998 555555554

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.23  E-value=4.1e-11  Score=72.19  Aligned_cols=57  Identities=30%  Similarity=0.449  Sum_probs=47.3

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+++ +++++..++.+
T Consensus        12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~   80 (106)
T 4amh_A           12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVT-HEEAVTALKNT   80 (106)
T ss_dssp             CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHSC
T ss_pred             CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHhCC
Confidence            7788888875543        222   46899999999 9999999999999999988 88999888653

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.22  E-value=5.7e-12  Score=78.49  Aligned_cols=61  Identities=18%  Similarity=0.270  Sum_probs=50.6

Q ss_pred             eEec-cCCeEEEEEEcCC------Ce-E--EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          7 HMID-LKGYCIIIAETPD------GK-V--KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~------~~-i--v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+.+ ..|+||.+....+      .. |  +.+|+||+++ ||++||+|++|||+++.+++ +++++++|+..
T Consensus        34 ~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~  105 (130)
T 1i16_A           34 TLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT-RFEAWNIIKAL  105 (130)
T ss_dssp             EEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSC-HHHHHHHHHTS
T ss_pred             EEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            3444 7899999987544      22 2  4689999999 99999999999999999998 99999999764

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=1.5e-11  Score=73.73  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             ceEec-cCCeEEEEEEc---C------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAET---P------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~---~------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+...   .      .+.+   +.+|+||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus        13 v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   87 (107)
T 1wf8_A           13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT-QNFAATVLRN   87 (107)
T ss_dssp             EEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCC-HHHHHHHHHH
T ss_pred             EEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            34444 77999999871   1      1222   46899999999 9999999999999999988 8888887753

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.22  E-value=2.3e-11  Score=70.78  Aligned_cols=56  Identities=29%  Similarity=0.390  Sum_probs=46.3

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+  +.+   +.+||||+++| |++||+|++|||+++.+.. ++++...++.
T Consensus        15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   76 (92)
T 2qg1_A           15 GKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-QEAVAALLKC   76 (92)
T ss_dssp             TSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            5788998876543  333   46899999999 9999999999999999988 8888887753

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=1.2e-11  Score=73.16  Aligned_cols=55  Identities=27%  Similarity=0.474  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+||.+....+.  .+    +.+|+||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus        21 ~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~   82 (103)
T 1wfv_A           21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT-HARAIELIK   82 (103)
T ss_dssp             TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred             CCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            67889988765542  23    35899999999 9999999999999999998 888888775

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=2.3e-11  Score=74.27  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=46.4

Q ss_pred             CCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         12 KGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        12 ~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|+||.+....+        +.+   +.+++||+++| |++||+|++|||+++.+++ +++++.+|+.+
T Consensus        30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~~   97 (117)
T 1ujd_A           30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT-YEEVQSIISQQ   97 (117)
T ss_dssp             CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCC-HHHHHHHHSCC
T ss_pred             CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhcC
Confidence            678888865543        122   46899999999 9999999999999999998 89999998763

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=5.6e-11  Score=72.91  Aligned_cols=57  Identities=26%  Similarity=0.412  Sum_probs=47.4

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+++ +++++.+++..
T Consensus        34 ~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~  102 (117)
T 2byg_A           34 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT-HEEAVAILKNT  102 (117)
T ss_dssp             TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            5789999976422        232   46899999999 9999999999999999988 88999988753

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=9.8e-12  Score=76.17  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=47.2

Q ss_pred             CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .|++.+ ..++||.+.....-.|  +.+++||+++||++||+|++|||+++.+++ ++++.++|+
T Consensus        18 ~v~l~~~~~~~G~~l~~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~-~~d~~~~i~   81 (111)
T 1vae_A           18 GIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLT-VSEVMKLLK   81 (111)
T ss_dssp             CCCEECCSSCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred             EEEEEcCCCcccEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            467776 6788887743322123  468999999999999999999999999666 678888775

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=1.8e-11  Score=75.21  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=46.3

Q ss_pred             cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+      +.+   +.++|||+++| |++||+|++|||+++.+++ +++++..++.
T Consensus        35 ~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~  100 (117)
T 2fne_A           35 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT-HEEAVAILKR  100 (117)
T ss_dssp             TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            5789999876432      122   46899999999 9999999999999999888 8899988864

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=4.8e-11  Score=70.19  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+.....+.+   +.+++||+++| |++||+|++|||+++ +.+ ++++.++|+.
T Consensus        17 ~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~-~~~~~~~l~~   75 (91)
T 2e7k_A           17 GEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSD-PRALQELLRN   75 (91)
T ss_dssp             TCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTC-HHHHHHHHHT
T ss_pred             CCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCC-HHHHHHHHHc
Confidence            4678999987544443   46899999987 999999999999999 666 7799988864

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.21  E-value=6.9e-11  Score=68.78  Aligned_cols=56  Identities=21%  Similarity=0.409  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcC-------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP-------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~-------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....       .+.+   +.+|+||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus        14 ~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~   80 (97)
T 2iwn_A           14 VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFT-NQQAVEVLRH   80 (97)
T ss_dssp             TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred             CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            778999987762       2222   46899999999 9999999999999999998 8888887754

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.21  E-value=2.4e-11  Score=72.69  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             cCCeEEEEEEcC--------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETP--------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~--------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+||.+....        .+.+   +.+||||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus        24 ~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~   90 (108)
T 2jre_A           24 TSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA-QSDVVEVLR   90 (108)
T ss_dssp             TSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSC-HHHHHHHHH
T ss_pred             CCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            678999987532        1332   46899999999 9999999999999999997 889988775

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.21  E-value=5.4e-11  Score=72.33  Aligned_cols=56  Identities=32%  Similarity=0.512  Sum_probs=46.0

Q ss_pred             cCCeEEEEEEcC--CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP--DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~--~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....  .+.+   +.+||||+++| |++||+|++|||+++.+|+ ..++...++.
T Consensus        24 ~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   85 (119)
T 1tp5_A           24 STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN   85 (119)
T ss_dssp             TSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            678999998765  3333   46899999999 9999999999999999998 7777766653

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.21  E-value=4e-11  Score=74.08  Aligned_cols=57  Identities=14%  Similarity=0.237  Sum_probs=47.9

Q ss_pred             cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+      +.+   +.+||||+++| |++||+|++|||+++.+++ +++++.+|+..
T Consensus        35 ~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~  101 (118)
T 3b76_A           35 GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS-RSEAVALLKRT  101 (118)
T ss_dssp             TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC-HHHHHHHHHSC
T ss_pred             CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            4789999987542      222   46899999999 9999999999999999988 88999998754

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=3.6e-11  Score=72.05  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=48.4

Q ss_pred             ceEec-cCCeEEEEEEcC-----------CCeE---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETP-----------DGKV---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~-----------~~~i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.+.+ ..+|||.+....           .+.+   +.+++||+++ ||++||+|++|||+++.+++ +++++.+++.
T Consensus        12 v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~-~~~~~~~~~~   88 (107)
T 1uhp_A           12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT-HDQAVEAFKT   88 (107)
T ss_dssp             EEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            34444 578999987533           2232   4689999999 99999999999999999988 8899888763

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=5.1e-11  Score=73.28  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+   +.+   +.+++||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus        29 ~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~   91 (123)
T 1ueq_A           29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT-HADVVKLFQS   91 (123)
T ss_dssp             TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred             CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            7789999875432   222   46899999999 9999999999999999998 8999998875

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.21  E-value=3e-11  Score=69.71  Aligned_cols=60  Identities=33%  Similarity=0.588  Sum_probs=47.5

Q ss_pred             eEec--cCCeEEEEEEcCC-C-eE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID--LKGYCIIIAETPD-G-KV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~--~~g~~i~l~~~~~-~-~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+  ..++||.+....+ + .+    +.+||||++ +||++||+|++|||+++.+++ ++++...++.
T Consensus         7 ~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   75 (87)
T 4e34_A            7 LLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQ   75 (87)
T ss_dssp             EEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            4444  4588888875432 2 22    468999999 799999999999999999998 8899988864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.20  E-value=4.7e-11  Score=70.74  Aligned_cols=56  Identities=23%  Similarity=0.331  Sum_probs=46.3

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+.+ +.++...++.
T Consensus        14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   81 (102)
T 2i1n_A           14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVV-HSRAVEALKE   81 (102)
T ss_dssp             TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            6789999986432        332   46899999999 9999999999999999988 8888887754

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.20  E-value=2.5e-11  Score=74.86  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             eEec--cCCeEEEEEEcCC------CeE---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID--LKGYCIIIAETPD------GKV---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~--~~g~~i~l~~~~~------~~i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+  ..|+||.+....+      +.+   +.+||||+++ ||++||+|++|||+++.+++ +++++.+++.
T Consensus        29 ~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~-~~~~~~~l~~  100 (120)
T 2iwo_A           29 EMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMT-HTQAVNLLKN  100 (120)
T ss_dssp             EEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCB-HHHHHHHHHH
T ss_pred             EEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            3444  3488998876432      222   4689999999 99999999999999999998 9999998864

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.20  E-value=4.3e-11  Score=69.39  Aligned_cols=53  Identities=28%  Similarity=0.347  Sum_probs=39.8

Q ss_pred             CeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         13 GYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        13 g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ++||.+.....+.+   +.+||||+++||++||+|++|||+++.+.+ .+++.++++
T Consensus        18 ~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~   73 (90)
T 2eaq_A           18 DFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYND-SKEWEEAMA   73 (90)
T ss_dssp             CCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTC-HHHHHHHHH
T ss_pred             cccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCC-HHHHHHHHH
Confidence            56777755444433   468999999999999999999999994444 557766654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.20  E-value=4.3e-11  Score=70.13  Aligned_cols=55  Identities=24%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+||.+....+  +.+   +.++|||+++| |++||+|++|||+++.+++ +.++...++
T Consensus        15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~   75 (95)
T 2vwr_A           15 GEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT-PELAAQIIQ   75 (95)
T ss_dssp             TCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred             CCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            3578998866543  333   46899999999 9999999999999999988 778887765

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.8e-11  Score=71.12  Aligned_cols=56  Identities=23%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..+|||.+....+   +.+   +.+++||+++||++||+|++|||+++.+++ +.++..+++.
T Consensus        17 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~   78 (94)
T 2eeg_A           17 PSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMT-HLEAQNRIKG   78 (94)
T ss_dssp             SSCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCC-HHHHHHHHHT
T ss_pred             CCccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            5678888865432   222   468999999999999999999999999997 8888887754

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.20  E-value=3.5e-11  Score=69.91  Aligned_cols=57  Identities=28%  Similarity=0.452  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCC--CeE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--GKV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+....+  ..+    +.++|||+++ ||++||+|++|||+++.+++ +.++...++.+
T Consensus        15 ~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~-~~~~~~~~~~~   78 (90)
T 1qav_A           15 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKKT   78 (90)
T ss_dssp             TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            4788998876432  222    4689999999 99999999999999999998 88998888653

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.20  E-value=4.4e-11  Score=70.91  Aligned_cols=55  Identities=31%  Similarity=0.445  Sum_probs=45.2

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.|+||.+....+   +.+   +.+++||+++||++||+|++|||+++.+|+ ..+++..++
T Consensus        20 ~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~   80 (101)
T 1uez_A           20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVT-HAEAVKALK   80 (101)
T ss_dssp             TTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCC-HHHHHHHSS
T ss_pred             CCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHhhc
Confidence            6789999977642   332   468999999999999999999999999999 667776664

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.20  E-value=3e-11  Score=71.01  Aligned_cols=56  Identities=32%  Similarity=0.491  Sum_probs=45.4

Q ss_pred             cCCeEEEEEEcCC---------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+         +.+   +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        16 ~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~   84 (98)
T 1ihj_A           16 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST-EQAVIDLIKE   84 (98)
T ss_dssp             SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            5688998865432         222   46899999999 9999999999999999998 7888887753

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=3.7e-11  Score=71.10  Aligned_cols=52  Identities=17%  Similarity=0.414  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..++||.+..   +.|  +.+||||+++||++||+|++|||+++.+.+ ++++.++|+
T Consensus        23 ~~~lG~~~~~---G~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~-~~~~~~~l~   76 (90)
T 1y7n_A           23 RYQLGFSVQN---GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATP-HEKIVHILS   76 (90)
T ss_dssp             TSCCCEEEET---TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSC-HHHHHHHHH
T ss_pred             ccccCeEecC---CEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            4567776632   344  568999999999999999999999998777 789998885

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.19  E-value=4.8e-11  Score=74.43  Aligned_cols=62  Identities=23%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             CceEec-cCCeEEEEEEcCCCeEE-ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPDGKVK-LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~~iv-~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+++.+ ..||||.+.....+..+ ..-.||+.+||++||+|++|||+++.+++ +++++++|+.
T Consensus        15 ~V~L~Kg~~G~GFsI~~~~~g~~V~~I~~~~~~aGL~~GD~Il~VNG~~v~~~~-h~evv~~lk~   78 (113)
T 3soe_A           15 TIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLT-HLQVVEVLKQ   78 (113)
T ss_dssp             EEEEECBTTBSSEEEEEETTEEEEEEESCGGGSTTCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEEEECCCcccEEEeCCCCCcEEEEecChHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            367777 78999999766555432 11127889999999999999999999999 9999999974

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.19  E-value=6.7e-11  Score=70.63  Aligned_cols=59  Identities=19%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             EeccCCeEEEEEEcC-----CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MIDLKGYCIIIAETP-----DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~-----~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+..|+||.+....     +..+    +.+||||+++| |++||+|++|||+++.+++ ++++...++.
T Consensus        17 l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~~~~   85 (106)
T 3axa_A           17 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS-QERAAELMTR   85 (106)
T ss_dssp             EECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             ECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            344788898886521     1122    46899999999 9999999999999999988 8899888764

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.18  E-value=5.4e-11  Score=73.81  Aligned_cols=56  Identities=20%  Similarity=0.378  Sum_probs=46.3

Q ss_pred             cCCeEEEEEEcCCC---e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG---K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+.   . |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        28 ~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~   90 (129)
T 2kpk_A           28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT-HAQVVKIFQS   90 (129)
T ss_dssp             SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            56888888764332   2 2  46899999999 9999999999999999998 8899988864

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.18  E-value=5.1e-11  Score=70.69  Aligned_cols=40  Identities=30%  Similarity=0.506  Sum_probs=36.8

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++|||+++||++||+|++|||+++.+++ ++++...++.
T Consensus        52 V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~   91 (104)
T 3sfj_A           52 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVT-HDQARKRLTK   91 (104)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHTC
T ss_pred             ECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            468999999999999999999999999988 8899998864

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=5.2e-11  Score=71.17  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=45.2

Q ss_pred             CCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         12 KGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        12 ~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .++||.+....+   +.+   +.+++||+++||++||+|++|||+++.+++ ++++.++|+
T Consensus        27 ~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~   86 (104)
T 1wi2_A           27 AQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIE-HSKAVEILK   86 (104)
T ss_dssp             CCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred             CCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence            688998876543   222   468999999999999999999999999977 889988875

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.18  E-value=4.4e-11  Score=71.35  Aligned_cols=61  Identities=18%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             ceEec--cCCeEEEEEEc----------CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAET----------PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~----------~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |.+.+  -.+|||.+...          ..+.+   +.+++||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus        19 v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~   94 (104)
T 2z17_A           19 VTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFT-YKQVVDLIRS   94 (104)
T ss_dssp             EEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence            44554  35789988762          11222   468999999999999999999999999888 8899988864

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.18  E-value=1.7e-11  Score=77.31  Aligned_cols=60  Identities=12%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             eEec-cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+ +.|+||.+.......+   +.+|+||+++| |++||+|++|||+++.+.+ +++++++|+.
T Consensus        32 ~l~k~~~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s-~~d~~~~l~~   96 (126)
T 1wif_A           32 KLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT-LREFLKLLQN   96 (126)
T ss_dssp             EEECCTTCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCC-HHHHHHHHTS
T ss_pred             EEecCCceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence            3444 8899988766433322   46899999999 9999999999999998777 7799999875

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.18  E-value=8.1e-11  Score=71.36  Aligned_cols=56  Identities=34%  Similarity=0.487  Sum_probs=46.4

Q ss_pred             cCCeEEEEEEcC---CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP---DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~---~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....   .+.+   +.+||||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus        34 ~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~   96 (112)
T 2r4h_A           34 AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK-HSRAIELIKN   96 (112)
T ss_dssp             TTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            568899887653   2322   46899999999 9999999999999999998 8899888764

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=9.5e-11  Score=71.55  Aligned_cols=59  Identities=25%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             eEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          7 HMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+.+ -.|+||.+....+        +.+   +.+++||+++| |++||+|++|||+++.+++ ++++...++
T Consensus        22 ~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~~~   93 (120)
T 2eno_A           22 NLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL-HQDAVDLFR   93 (120)
T ss_dssp             EEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCC-HHHHHHHHH
T ss_pred             EEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            3444 5789999876432        222   46899999999 9999999999999999998 889888775

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.17  E-value=5.3e-11  Score=69.61  Aligned_cols=53  Identities=21%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             CCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         12 KGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        12 ~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+||+.+..   +.+   +.+||||+++| |++||+|++|||+++.+++ ++++.++|+..
T Consensus        13 ~~~G~~~~~---gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~i~~~   69 (88)
T 3e17_A           13 EEYGLRLGS---QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS-LTDARKLIEKS   69 (88)
T ss_dssp             CCCCEEEEE---EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHHT
T ss_pred             CCCCEEEeC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            456665533   222   46899999999 9999999999999999888 99999988643

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=3.4e-11  Score=72.81  Aligned_cols=56  Identities=32%  Similarity=0.457  Sum_probs=46.5

Q ss_pred             cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+    +.+   +.+|+||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        27 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~   90 (116)
T 2dm8_A           27 RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS-HEEAITALRQ   90 (116)
T ss_dssp             SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSC-HHHHHHHHHT
T ss_pred             CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            6788888865443    233   35899999999 9999999999999999998 8899988864

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.16  E-value=7.6e-11  Score=72.44  Aligned_cols=56  Identities=27%  Similarity=0.337  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcCC---Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+   +. |  +.+||||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        30 ~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~   92 (125)
T 3hpk_A           30 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT-KVEVAKMIQE   92 (125)
T ss_dssp             TSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            4678888876543   22 2  46899999999 9999999999999999988 8899998864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.16  E-value=8.5e-11  Score=70.65  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+....+  +.+   +.+||||+++|| ++||+|++|||+++.+++ ++++.++++.
T Consensus        12 ~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~-~~~~~~~l~~   73 (112)
T 1qau_A           12 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS-YDSALEVLRG   73 (112)
T ss_dssp             TTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            7789999977654  332   468999999998 999999999999999977 7788888753

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.16  E-value=1.9e-11  Score=74.14  Aligned_cols=61  Identities=26%  Similarity=0.436  Sum_probs=46.4

Q ss_pred             ceEec--cCCeEEEEEEcC--CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAETP--DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~--~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      |++-+  ..+|||.+....  .+.+   +.+||||+++||++||+|++|||+++.+++ ++++.+.++.
T Consensus        17 ~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~   84 (114)
T 2edz_A           17 CKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE-HAQVVELVRK   84 (114)
T ss_dssp             EEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSC-HHHHHHHHHH
T ss_pred             EEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            34444  456676665432  3333   458999999999999999999999999987 8899888753

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.16  E-value=2.7e-11  Score=73.80  Aligned_cols=56  Identities=21%  Similarity=0.379  Sum_probs=47.0

Q ss_pred             cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+    +.+   +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus        26 ~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~   89 (119)
T 1x6d_A           26 GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT-HHDALAILRQ   89 (119)
T ss_dssp             TSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCC-HHHHHHHHHH
T ss_pred             CCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            7789999976543    222   46899999999 9999999999999999888 8899888753

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.16  E-value=3.1e-11  Score=71.90  Aligned_cols=56  Identities=20%  Similarity=0.263  Sum_probs=44.4

Q ss_pred             ccCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         10 DLKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        10 ~~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .-.++||.+....+.  .+    +.++|||+++||++||+|++|||+++.+++ +.++...++
T Consensus        13 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~   74 (103)
T 1wf7_A           13 GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMT-HLEAQNKIK   74 (103)
T ss_dssp             SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCC-HHHHHHHHH
T ss_pred             CCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            346788887654432  22    358999999999999999999999999997 778877764

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=3e-11  Score=70.92  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+.  .+    +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus        15 ~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~   76 (94)
T 1vb7_A           15 PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENML-HAEAQSKIRQ   76 (94)
T ss_dssp             SSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            56778877654332  22    458999999999999999999999999997 7899888865

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.15  E-value=4.1e-11  Score=72.64  Aligned_cols=56  Identities=16%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+|+.+.....+.+   +.+||||+++| |++||+|++|||+++.+.. ++++..+++.
T Consensus        13 ~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~~~~   72 (106)
T 2la8_A           13 GKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVCYALFKG   72 (106)
T ss_dssp             SSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSC-HHHHHHHHHS
T ss_pred             CCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHhC
Confidence            5677887766444443   35899999999 9999999999999999988 7888877754

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=4.5e-11  Score=72.47  Aligned_cols=56  Identities=36%  Similarity=0.703  Sum_probs=45.9

Q ss_pred             cCCeEEEEEEcCC----C-------eE--EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----G-------KV--KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~-------~i--v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....+    +       .|  +.+|+||++ +||++||+|++|||+++.++. ++++.++|+.
T Consensus        21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~-~~~~~~~l~~   90 (114)
T 1uew_A           21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP-HADIVKLIKD   90 (114)
T ss_dssp             TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSC-HHHHHHHHHH
T ss_pred             CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            5789999975321    1       23  568999999 999999999999999999987 8899888753

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.15  E-value=4.6e-11  Score=71.52  Aligned_cols=57  Identities=35%  Similarity=0.584  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCC-C-e-E---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD-G-K-V---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~-~-~-i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+ + . +   +.+||||+++ ||++||+|++|||+++.+++ +++++.+++..
T Consensus        20 ~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~-~~~~~~~l~~~   83 (103)
T 2dc2_A           20 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQQ   83 (103)
T ss_dssp             SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSC-HHHHHHHHHHC
T ss_pred             CCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            4689998876542 2 2 2   4689999995 99999999999999999998 99999988653

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.5e-10  Score=69.49  Aligned_cols=56  Identities=29%  Similarity=0.477  Sum_probs=44.4

Q ss_pred             cCCeEEEEEEc---------CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAET---------PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~---------~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+...         ..+.+   +.++|||+++||++||+|++|||+++.++. ..++...++.
T Consensus        25 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~   92 (110)
T 1x5q_A           25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAE-HHEAVEALRG   92 (110)
T ss_dssp             SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHS
T ss_pred             CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHhhC
Confidence            77899998742         12232   468999999999999999999999999988 6667666643

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=2.4e-11  Score=72.87  Aligned_cols=61  Identities=31%  Similarity=0.449  Sum_probs=48.7

Q ss_pred             ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....+  +.+   +.+++||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus        19 v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~~~~   86 (113)
T 1um7_A           19 IILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT-HEQAAAALKR   86 (113)
T ss_dssp             EEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCC-HHHHHHHHHS
T ss_pred             EEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            44544 6788998866542  222   46899999999 9999999999999999998 8888887754

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=9.1e-11  Score=69.68  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=47.3

Q ss_pred             ceEec-cCCeEEEEEEcCCCeEEe-cCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPDGKVKL-YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~~~iv~-~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +++.+ +.|+||.+.....+.++. .-.+|+++||++||+|++|||+++.+++ +++++++|+.
T Consensus        14 v~l~~~~~g~G~~i~~~~~Gv~V~~v~~~a~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~   76 (96)
T 1ujv_A           14 LTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS-HTEVVDILKD   76 (96)
T ss_dssp             EEEECCSSSSSEEEEEETTEEEEEEESCGGGSTTCCSSCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EEEEeCCCceeEEEEcCCCCEEEEEEecccccCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            45666 899999997655443321 1124789999999999999999999998 8899998864

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.6e-10  Score=70.20  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=44.3

Q ss_pred             eEec-cCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          7 HMID-LKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+.+ -.++|+.+....+..+    +.+|+||+++||++||+|++|||+++.+|+ ..+....++
T Consensus        24 ~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~~~   87 (117)
T 1uit_A           24 KVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSAT-EQQARLIIG   87 (117)
T ss_dssp             EEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCC-HHHHHHHTT
T ss_pred             EEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            3344 3578888876644333    468999999999999999999999999998 555554443

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=4.1e-11  Score=71.61  Aligned_cols=56  Identities=23%  Similarity=0.441  Sum_probs=47.0

Q ss_pred             cCCeEEEEEEcCC---------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+         +.+   +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus        17 ~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~   85 (105)
T 1wha_A           17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR-HDHAVSLLTA   85 (105)
T ss_dssp             TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC-HHHHHHHHTS
T ss_pred             CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            6789999976432         222   45899999999 9999999999999999988 8899998875

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=1.5e-10  Score=68.56  Aligned_cols=40  Identities=38%  Similarity=0.633  Sum_probs=36.4

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus        46 V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~   86 (103)
T 2fcf_A           46 VLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS-HEQAVEAIRK   86 (103)
T ss_dssp             ECSSSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             eCCCCcHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            45899999999 9999999999999999987 8899988865

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=1.2e-10  Score=71.60  Aligned_cols=55  Identities=24%  Similarity=0.437  Sum_probs=44.8

Q ss_pred             cCCeEEEEEEcC-------CC-eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETP-------DG-KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~-------~~-~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.|+||.+....       .. .|  +.+++||+++| |++||+|++|||+++.+++ ++++.++|+
T Consensus        26 ~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~   91 (122)
T 1v5q_A           26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST-FEEANQLLR   91 (122)
T ss_dssp             SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSC-HHHHHHHHH
T ss_pred             CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            589999997541       11 23  46899999999 9999999999999999976 778888775

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.12  E-value=4.1e-11  Score=72.29  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEc--------CCCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAET--------PDGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~--------~~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+...        .+..+    +.+||||+++| |++||+|++|||+++.+++ +.+++..++.
T Consensus        14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~   82 (113)
T 2g5m_B           14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT-QSFAASVLRN   82 (113)
T ss_dssp             SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            57888888761        11222    35899999999 9999999999999999988 8888887753

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.12  E-value=8.6e-11  Score=72.81  Aligned_cols=55  Identities=25%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             CCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|+||.+....+            +.+   +.+||||+++| |++||+|++|||+++.+++ ++++..+|+.
T Consensus        42 ~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~  112 (128)
T 1nf3_C           42 KPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKS-LDQVTDMMIA  112 (128)
T ss_dssp             SCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCC-HHHHHHHHHH
T ss_pred             CCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            578888864421            222   45899999999 9999999999999998888 8899998853

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.7e-10  Score=68.33  Aligned_cols=54  Identities=22%  Similarity=0.324  Sum_probs=44.1

Q ss_pred             CeEEEEEEcC---CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         13 GYCIIIAETP---DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        13 g~~i~l~~~~---~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+||.+....   .+.+   +.++|||+++||++||+|++|||+++.+++ ++++...++.
T Consensus        23 ~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~   82 (100)
T 2eeh_A           23 RLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT-MGSAVKVLTS   82 (100)
T ss_dssp             SCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCC-HHHHHHHHHS
T ss_pred             CccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhcC
Confidence            3788886653   2332   468999999999999999999999999998 8899887753

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.12  E-value=3.4e-11  Score=74.77  Aligned_cols=56  Identities=20%  Similarity=0.376  Sum_probs=46.8

Q ss_pred             cCCeEEEEEEcCCC------eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG------KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~------~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+....+.      .+    +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        36 ~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~  102 (127)
T 1wg6_A           36 SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS-NHEAMETLRR  102 (127)
T ss_dssp             TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSC-HHHHHHHHHH
T ss_pred             CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHH
Confidence            67888888765421      22    35899999999 9999999999999999998 9999998863

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=74.14  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=47.1

Q ss_pred             CceEecc-C---CeEEEEEEcC-CC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMIDL-K---GYCIIIAETP-DG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~~-~---g~~i~l~~~~-~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|++.+. .   ++||.+.... .+  .+    +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus        18 ~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~-~~~~~~~l~~   90 (114)
T 2d8i_A           18 SIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN-SSMLKDFLSQ   90 (114)
T ss_dssp             EEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCC-HHHHHHHHTS
T ss_pred             EEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHhC
Confidence            4566652 2   5777776432 22  22    358999999999999999999999999987 8899888764

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.11  E-value=1.4e-10  Score=75.87  Aligned_cols=56  Identities=16%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             cCCeEEEEEE---cC-----CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAE---TP-----DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~---~~-----~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+..   ..     +..+    +.+|+||+++| |++||+|++|||+++.+++ +++++.+|++
T Consensus        90 ~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~-~~~~~~~l~~  158 (170)
T 3egg_C           90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT-QSFAASVLRN  158 (170)
T ss_dssp             TTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBC-HHHHHHHHHH
T ss_pred             CCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            6789999877   11     1222    46899999999 9999999999999999999 9999999875

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=1.7e-10  Score=70.53  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             eEec-c-CCeEEEEEEcCC---CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-L-KGYCIIIAETPD---GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~-~g~~i~l~~~~~---~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+ . .++||.+....+   +.+    +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus        20 ~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~-~~~~~~~l~~   89 (117)
T 1v62_A           20 EIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS-LLEATKLLAS   89 (117)
T ss_dssp             EEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCC-HHHHHHHHHS
T ss_pred             EEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            4444 3 688888877533   323    35899999999 9999999999999998888 8899998864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=72.08  Aligned_cols=56  Identities=21%  Similarity=0.349  Sum_probs=45.3

Q ss_pred             cCCeEEEEEEcCCC-----eE----EecCChHhhcC-CCCCCEEEEECCEEeC-CCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG-----KV----KLYGSPADKSD-LEIGDEILEVNGKTFK-DNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-----~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~-~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+.     .+    +.+|+||+++| |++||+|++|||+++. +++ +++++.+|+.
T Consensus        36 ~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~-~~~~~~~l~~  102 (128)
T 2db5_A           36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS-HQQAIALLQQ  102 (128)
T ss_dssp             SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSC-HHHHHHHHHH
T ss_pred             CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCC-HHHHHHHHHc
Confidence            36888888654322     23    35899999999 9999999999999998 888 8899998864

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=71.96  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=45.8

Q ss_pred             cCCeEEEEEEcC-------CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP-------DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~-------~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....       ...+    +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus        26 ~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~   93 (129)
T 2dmz_A           26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA-NHDVVEVLRN   93 (129)
T ss_dssp             TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCC-HHHHHHHHHH
T ss_pred             CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            568899887632       1222    45899999999 9999999999999999988 8899988753

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.11  E-value=1.3e-10  Score=72.56  Aligned_cols=56  Identities=27%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             cCCeEEEEEEcCC------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+      +. |  +.+|+||+++| |++||+|++|||+++.+.+ ++++.++|+.
T Consensus        47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~  112 (131)
T 1wfg_A           47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGAT-FEEVYNIILE  112 (131)
T ss_dssp             CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            4578888754221      12 2  46899999999 9999999999999999988 8899998854

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.11  E-value=7e-11  Score=79.96  Aligned_cols=61  Identities=30%  Similarity=0.443  Sum_probs=50.5

Q ss_pred             CceEec-cCCeEEEEEEcCC--Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          5 PSHMID-LKGYCIIIAETPD--GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .|++.+ +.||||.+....+  +. |  +.+|+||+++||++||+|++|||+++.+++ ++++..+|+
T Consensus        12 ~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s-~~dl~~~l~   78 (216)
T 2krg_A           12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIR   78 (216)
T ss_dssp             EEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCC-THHHHHHHH
T ss_pred             EEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            477777 8999999976653  23 3  568999999999999999999999999666 678888775

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.10  E-value=9.4e-11  Score=69.93  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+.  .+    +.++|||+++||++||+|++|||+++.++. ++++.++|+.
T Consensus        14 ~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~   75 (103)
T 1v5l_A           14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMT-HADAQDRIKA   75 (103)
T ss_dssp             SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCC-HHHHHHHHTT
T ss_pred             CCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            56788888665432  22    458999999999999999999999999977 7799988864

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.10  E-value=2.6e-10  Score=72.66  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=45.6

Q ss_pred             ceEec--cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960          6 SHMID--LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      |++.+  ..++||.+.....+.+   +.+||||++|||++||+|++|||+++.+|+ .+....++
T Consensus         8 v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~   71 (166)
T 1w9e_A            8 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWS-SDKAHKVL   71 (166)
T ss_dssp             EEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHH
T ss_pred             EEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHH
Confidence            56665  4578888877655443   468999999999999999999999999998 43344444

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.10  E-value=9.3e-11  Score=71.20  Aligned_cols=56  Identities=34%  Similarity=0.503  Sum_probs=46.4

Q ss_pred             cCCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+            +.+   +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus        26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~~~~   97 (117)
T 2ehr_A           26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS-HSEAVEAIKN   97 (117)
T ss_dssp             SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC-HHHHHHHHHT
T ss_pred             CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            4689998865432            232   46899999999 9999999999999999998 8899988865

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.10  E-value=1.7e-10  Score=68.70  Aligned_cols=55  Identities=25%  Similarity=0.450  Sum_probs=44.5

Q ss_pred             CCeEEEEEEcCCC-----eE---EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPDG-----KV---KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~~-----~i---v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|+||.+.....+     .+   +.+|+||++ +||++||+|++|||+++.+.+ ++++.++|+.
T Consensus        21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~   84 (101)
T 2yt7_A           21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLP-LAACQAAVRE   84 (101)
T ss_dssp             CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred             CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5889998754432     22   468999999 579999999999999997777 7899988864

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=8.7e-11  Score=71.50  Aligned_cols=55  Identities=24%  Similarity=0.442  Sum_probs=45.0

Q ss_pred             CCeEEEEEEcCC---CeE---EecCChHhhc--CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD---GKV---KLYGSPADKS--DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~---~~i---v~~gspA~~a--GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+|||.+....+   +.+   +.+||||+++  ||++||+|++|||+++.+++ +++++.+++.
T Consensus        27 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~-~~~~~~~~~~   89 (119)
T 2cs5_A           27 GRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLFIKA   89 (119)
T ss_dssp             SCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSC-HHHHHHHHHH
T ss_pred             CCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            458888876543   122   4689999999  99999999999999999998 9999888753

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.1e-11  Score=74.52  Aligned_cols=40  Identities=33%  Similarity=0.478  Sum_probs=36.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+++||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus        68 V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~  107 (126)
T 2yuy_A           68 VKEGGPAFEAGLCTGDRIIKVNGESVIGKT-YSQVIALIQN  107 (126)
T ss_dssp             CCSSSHHHHHTCCSSCCCCEETTEECSSCC-HHHHHHHHHT
T ss_pred             ECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            468999999999999999999999999888 8899998865

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.08  E-value=2.8e-10  Score=69.62  Aligned_cols=55  Identities=27%  Similarity=0.315  Sum_probs=43.5

Q ss_pred             CCeEEEEEEcCCC---eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPDG---KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~~---~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .++||.+....+.   .+   +.+||||+++| |++||+|++|||+++.+.+ .+++.++++.
T Consensus        36 ~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~-~~~~~~~l~~   97 (114)
T 2gzv_A           36 NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT-KVEVAKMIQE   97 (114)
T ss_dssp             SCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            3488888765442   22   46899999999 9999999999999997666 7788888753

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.08  E-value=2.3e-10  Score=74.32  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=46.3

Q ss_pred             CCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         12 KGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        12 ~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .++||.+.....+.+   +.+||||+++| |++||+|++|||+++.+|+ ++++..+++..
T Consensus       125 ~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~  184 (206)
T 3r0h_A          125 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVCYALFKGA  184 (206)
T ss_dssp             CCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            567887765554543   46899999999 9999999999999999998 88999888653

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.08  E-value=3e-10  Score=69.29  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             cCCeEEEEEEcCCCe--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGK--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      -.+.|+.+.....+.  |  +.+|+||++.| |++||+|++|||+++.+|+ +++++++|+.
T Consensus        15 ~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~-h~evv~lLk~   75 (95)
T 3gge_A           15 EDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR-HYDVAKKLKE   75 (95)
T ss_dssp             SSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCC-HHHHHHHHHh
Confidence            567788876544443  2  56899999997 9999999999999999999 9999999975

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.08  E-value=2.5e-10  Score=67.82  Aligned_cols=57  Identities=25%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             EeccCCeEEEEEEcC-----------CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          8 MIDLKGYCIIIAETP-----------DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~-----------~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+-.++||.+....           .+.+   +.++|||++ ||++||+|++|||+++.+++ +.++...++
T Consensus        17 l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~-~~~~~~~~~   87 (103)
T 1n7t_A           17 VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLK   87 (103)
T ss_dssp             EECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred             EccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCC-HHHHHHHhh
Confidence            344568999987732           2333   458999999 99999999999999999988 888887775

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.08  E-value=1.5e-10  Score=70.18  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=46.4

Q ss_pred             ceEec--cCCeEEEEEEcCC-----CeE----EecCChHhhcC-CCCCCEEEEECCEEeC-CCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAETPD-----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFK-DNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~-----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~-~~~~~~ev~~~i~~   67 (69)
                      |++.+  ..|+||.+....+     ..+    +.+||||+++| |++||+|++|||+++. +++ ++++..+++.
T Consensus        24 v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~-~~~~~~~l~~   97 (117)
T 2o2t_A           24 FELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT-HQQAISILQK   97 (117)
T ss_dssp             EEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSC-HHHHHHHHHH
T ss_pred             EEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCC-HHHHHHHHHc
Confidence            34444  3678887765431     122    35899999999 9999999999999998 777 8899888753

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.08  E-value=1.8e-10  Score=70.75  Aligned_cols=56  Identities=25%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+    +.+   +.+||||+++| |++||+|++|||+++.+++ +.+++..++.
T Consensus        35 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~~~~   98 (124)
T 2daz_A           35 KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRS-HQNASAIIKT   98 (124)
T ss_dssp             SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSC-HHHHHHHHHH
T ss_pred             CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            5689999876543    222   46899999999 9999999999999999988 8888887753

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=1.1e-10  Score=69.83  Aligned_cols=56  Identities=20%  Similarity=0.373  Sum_probs=44.3

Q ss_pred             cCCeEEEEE-----Ec------CCCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIA-----ET------PDGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~-----~~------~~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+.     ..      ..+. |  +.++|||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus        19 ~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~   89 (108)
T 1q7x_A           19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT-HKQAVETLRN   89 (108)
T ss_dssp             SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCT-TSHHHHHHHH
T ss_pred             CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            578899886     21      1232 2  46899999999 9999999999999999776 7788887754

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.08  E-value=4.5e-10  Score=65.72  Aligned_cols=56  Identities=23%  Similarity=0.289  Sum_probs=44.5

Q ss_pred             eccCCeEEEEEEcCC-----------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960          9 IDLKGYCIIIAETPD-----------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus         9 ~~~~g~~i~l~~~~~-----------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+-.++||.+....+           +.+   +.++|||++ ||++||+|++|||+++.+++ +.+++..++
T Consensus        10 ~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~-~~~~~~~~~   79 (95)
T 1mfg_A           10 EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLK   79 (95)
T ss_dssp             ECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCB-HHHHHHHHH
T ss_pred             CCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCC-HHHHHHHhh
Confidence            345588898876331           232   468999999 99999999999999999988 778877765

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.08  E-value=2.4e-10  Score=70.82  Aligned_cols=40  Identities=38%  Similarity=0.633  Sum_probs=36.2

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++| |++||+|++|||+++.+++ .+++.++|+.
T Consensus        66 V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~  106 (123)
T 2iwq_A           66 VLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS-HEQAVEAIRK  106 (123)
T ss_dssp             ECSSSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             ECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            45899999999 9999999999999999987 8899988864

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.07  E-value=2.9e-10  Score=72.53  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+        +.+   +.+||||+++| |++||+|++|||+++.+|+ +.++...++.
T Consensus        15 ~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~   82 (196)
T 3gsl_A           15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT-HSAAVEALKE   82 (196)
T ss_dssp             TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            6789998877543        222   46899999999 9999999999999999999 7777776654

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.07  E-value=3.4e-10  Score=67.47  Aligned_cols=53  Identities=28%  Similarity=0.411  Sum_probs=41.5

Q ss_pred             cCCeEEEEEEcCC---------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         11 LKGYCIIIAETPD---------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      ..|+||.+....+         +.+   +.+||||+ +||++||+|++|||+++.+++ ..+....+
T Consensus        18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~-~~~~~~~~   82 (107)
T 2h2b_A           18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVE-HAFAVQQL   82 (107)
T ss_dssp             TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCC-HHHHHHHH
T ss_pred             CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCcc-HHHHHHHh
Confidence            4789999986543         222   46899999 999999999999999999998 54444444

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=9.6e-11  Score=70.56  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=49.2

Q ss_pred             ceEec--cCCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+  ..++||.+....+            +.+   +.+++||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus        13 v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~   91 (111)
T 1uju_A           13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT-HGEAVQLLRS   91 (111)
T ss_dssp             EEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSC-HHHHHHHHSS
T ss_pred             EEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            34444  4789999976542            222   46899999999 9999999999999999888 8899998865

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.06  E-value=2.7e-10  Score=74.57  Aligned_cols=56  Identities=30%  Similarity=0.507  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+   +.+   +.+||||+++||++||+|++|||+++.+++ +++++..++.
T Consensus        95 ~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~l~~  156 (192)
T 3k1r_A           95 PEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCT-HEEVINLIRT  156 (192)
T ss_dssp             TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHTS
T ss_pred             CCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHcC
Confidence            4788998865432   222   468999999999999999999999999988 8899988864

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.06  E-value=3.2e-10  Score=68.39  Aligned_cols=55  Identities=35%  Similarity=0.488  Sum_probs=44.8

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..|+||.+....+   +.+   +.+++||+++||++||+|++|||+++.+|+ +.++..+++
T Consensus        26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~~~   86 (114)
T 1x5n_A           26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD-HKEAVNVLK   86 (114)
T ss_dssp             SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC-TTHHHHHHH
T ss_pred             CCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence            6788999876432   333   458999999999999999999999999998 777777664

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.05  E-value=4.1e-10  Score=71.09  Aligned_cols=40  Identities=30%  Similarity=0.506  Sum_probs=36.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus        71 V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~  110 (139)
T 2vz5_A           71 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVT-HDQARKRLTK  110 (139)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHCC
T ss_pred             ECCCCHHHHCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence            468999999999999999999999999887 8899998875

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=5.5e-10  Score=68.79  Aligned_cols=55  Identities=33%  Similarity=0.531  Sum_probs=43.6

Q ss_pred             CCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .++||.+.....   +.+   +.+||||+++||++||+|++|||+++.+++ ..++++.++.
T Consensus        32 ~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~~~~   92 (128)
T 1uf1_A           32 RSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNIL-HDEAVRLLKS   92 (128)
T ss_dssp             CCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHTT
T ss_pred             CccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            467777755322   333   468999999999999999999999999998 6888887754

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=2.6e-10  Score=70.18  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=43.3

Q ss_pred             cCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++||.+....+     +.+   +.+++||+++| |++||+|++|||+++.++.   ++.++|+.
T Consensus        31 ~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~---~~~~~l~~   93 (124)
T 1wh1_A           31 QDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE---EAVALLTS   93 (124)
T ss_dssp             TCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHH---HHHHHHTC
T ss_pred             CCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHH---HHHHHHHh
Confidence            5578888876652     333   45899999999 9999999999999999766   77777754

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.04  E-value=1.3e-10  Score=71.46  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+||.+....+  +.+   +.+||||+++|| ++||+|++|||+++.+++ ++++.++++.
T Consensus        19 ~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~-~~~~~~~l~~   80 (127)
T 1b8q_A           19 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS-YDSALEVLRG   80 (127)
T ss_dssp             TSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSC-HHHHHHHHHS
T ss_pred             CCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5789999877654  233   458999999998 999999999999999977 7799888864

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.03  E-value=6.5e-10  Score=80.41  Aligned_cols=61  Identities=30%  Similarity=0.352  Sum_probs=50.8

Q ss_pred             ceEeccCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMIDLKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+..|+||.+....+..+    +.+||||+++||++||+|++|||+++.+++ +++++.+|+.
T Consensus        13 v~~~k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~-~~e~~~~l~~   77 (391)
T 3tsz_A           13 VKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLLD   77 (391)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEeecCCceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            445566789999877555543    468999999999999999999999999988 9999998863

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.02  E-value=4.9e-10  Score=63.11  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++|||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        28 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~   68 (81)
T 2rcz_A           28 ISQDSLAARDGNIQEGDVVLKINGTVTENMS-LTDAKTLIER   68 (81)
T ss_dssp             ECTTSHHHHHSSCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             ECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHC
Confidence            45899999999 9999999999999999776 7788888764

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.01  E-value=6.9e-10  Score=64.19  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus        30 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~   70 (92)
T 3cyy_A           30 ISQDSLAARDGNIQEGDVVLKINGTVTENMS-LTDAKTLIER   70 (92)
T ss_dssp             ECTTCHHHHSCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             ECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            46899999999 9999999999999999766 7788888764

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.01  E-value=8.8e-10  Score=71.64  Aligned_cols=56  Identities=27%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcCC---Ce-E--EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GK-V--KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~-i--v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+   +. |  +.+||||+++ ||++||+|++|||+++.+|+ ++++..+++.
T Consensus        18 ~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   80 (200)
T 2qt5_A           18 GTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR-HDEIISLLKN   80 (200)
T ss_dssp             TCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred             CCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            6789999876533   22 3  5689999999 99999999999999999998 8899887764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.00  E-value=1.6e-09  Score=69.13  Aligned_cols=57  Identities=30%  Similarity=0.438  Sum_probs=45.3

Q ss_pred             cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++|+.+.....        +.+   +.+||||+++| |++||+|++|||+++.+++ ++++++.++..
T Consensus       110 ~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~  178 (196)
T 3gsl_A          110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM-HEDAVAALKNT  178 (196)
T ss_dssp             TTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCB-HHHHHHHHHSC
T ss_pred             CCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCC-HHHHHHHHHcC
Confidence            4577777765432        222   46899999999 9999999999999999977 88999988653

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.99  E-value=3.6e-10  Score=67.18  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++...+
T Consensus         9 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---d~~~~l   44 (95)
T 3id1_A            9 IAANSIAAEAQIAPGTELKAVDGIETPDWD---AVRLQL   44 (95)
T ss_dssp             ECTTSHHHHTTCCTTCEEEEETTEECSSHH---HHHHHH
T ss_pred             eCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            578999999999999999999999999998   555544

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.99  E-value=1e-09  Score=71.20  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             cCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCC--CCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKD--NCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~--~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+     +.+   +.+||||+++| |+.||+|++|||+++.+  ++ +.++...++.
T Consensus        28 ~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~-~~~~~~~~~~   94 (206)
T 3r0h_A           28 KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT-TLKVHQLFHT   94 (206)
T ss_dssp             TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSC-HHHHHHHHHS
T ss_pred             CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccC-HHHHHHHHHh
Confidence            7889998876433     222   46899999998 99999999999999999  66 7788877764

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.97  E-value=9.3e-10  Score=71.01  Aligned_cols=54  Identities=24%  Similarity=0.337  Sum_probs=43.6

Q ss_pred             CCeEEEEEEcCC-----------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD-----------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~-----------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .|+||.+....+           +.+   +.+|+||++ ||++||+|++|||+++.+.. +.+++..++.
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~-~~~~~~~~~~   69 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLKT   69 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            467777776432           222   468999999 99999999999999999998 8899888754

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.51  E-value=6.5e-11  Score=72.47  Aligned_cols=56  Identities=34%  Similarity=0.539  Sum_probs=44.7

Q ss_pred             cCCeEEEEEEcCC---CeE---EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV---KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i---v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+   +.+   +.+||||++ +||++||+|++|||+++.+.+ .+++..+++.
T Consensus        38 ~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~-~~~~~~~l~~  100 (112)
T 2lob_A           38 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQ  100 (112)
Confidence            4688888865432   222   468999999 999999999999999998877 7788888764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.96  E-value=1.5e-09  Score=80.67  Aligned_cols=61  Identities=30%  Similarity=0.352  Sum_probs=51.4

Q ss_pred             ceEeccCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMIDLKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+..++||.+...++..+    +.+||||+++||++||+|++|||+++.+++ +++++.+|+.
T Consensus         5 V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t-~~e~~~~L~~   69 (468)
T 3shw_A            5 VKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLLD   69 (468)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             EEEecCCccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            456667889998876655443    468999999999999999999999999988 9999998864

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.95  E-value=6.9e-10  Score=66.13  Aligned_cols=36  Identities=39%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||++ ||++||+|++|||+++.+|+   ++...+.
T Consensus        14 V~~~spA~~-GL~~GD~I~~Ing~~v~~~~---dl~~~l~   49 (100)
T 3i18_A           14 VKDDVPAAD-VLHAGDLITEIDGNAFKSSQ---EFIDYIH   49 (100)
T ss_dssp             ECTTSGGGG-TCCTTCEEEEETTBCCSSHH---HHHHHHH
T ss_pred             eCCCCchHH-CCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence            368999996 99999999999999999988   5555543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.95  E-value=9.2e-10  Score=71.61  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=45.5

Q ss_pred             cCCeEEEEEEcCC-------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD-------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~-------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+       +. |  +.+||||++|| |++||+|++|||+++.+.+ ++++.++|+.
T Consensus        17 ~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~   83 (196)
T 1p1d_A           17 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST-FEEANQLLRD   83 (196)
T ss_dssp             TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSC-HHHHHHHHHT
T ss_pred             CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5899999987522       12 2  45899999999 9999999999999999766 6688888764

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.94  E-value=6.5e-10  Score=68.70  Aligned_cols=39  Identities=31%  Similarity=0.418  Sum_probs=35.0

Q ss_pred             ec--CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         28 LY--GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        28 ~~--gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+  ++||+++||++||+|++|||+++.+|. ++++..+|+.
T Consensus        52 ~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~-~~dl~~~l~~   92 (118)
T 2yub_A           52 NRMHISPNNRNAIHPGDRILEINGTPVRTLR-VEEVEDAIKQ   92 (118)
T ss_dssp             CTTTSCTTHHHHCCTTCCEEEESSSBTTTSC-HHHHHHHHHC
T ss_pred             cCCCCChHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHHh
Confidence            46  999999999999999999999999996 7788887764

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.94  E-value=6.9e-10  Score=77.29  Aligned_cols=56  Identities=29%  Similarity=0.475  Sum_probs=47.2

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+.  .+    +.+|+||++ +||++||+|++|||+++.+++ +++++.+|+.
T Consensus        88 ~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t-~~e~v~~l~~  150 (263)
T 1z87_A           88 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKK  150 (263)
T ss_dssp             TCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred             CCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcC-HHHHHHHHhc
Confidence            47899998776432  22    358999999 799999999999999999998 9999998864

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.94  E-value=7.4e-10  Score=67.30  Aligned_cols=55  Identities=29%  Similarity=0.480  Sum_probs=44.8

Q ss_pred             cCCeEEEEEEcCC---------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+         +.+   +.+++||+ +||++||+|++|||+++.+++ +++++..++.
T Consensus        25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~-~~~~~~~l~~   91 (117)
T 2csj_A           25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVL-HSFAVQQLRK   91 (117)
T ss_dssp             SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCC-HHHHHHHHHH
T ss_pred             CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcC-HHHHHHHHhc
Confidence            3799999876533         122   46899997 999999999999999999998 8888887753

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.93  E-value=8.7e-10  Score=63.89  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.+|+   ++...+.
T Consensus        11 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l~   47 (91)
T 2zpm_A           11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWV---TFVMLVR   47 (91)
T ss_dssp             ECTTSHHHHTTCCTTCEEEEETTEECCCHH---HHHHHHH
T ss_pred             ECCCChHHhcCCCCCCEEEEECCeEcCCHH---HHHHHHh
Confidence            468999999999999999999999999888   6655543

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.8e-10  Score=68.13  Aligned_cols=52  Identities=25%  Similarity=0.321  Sum_probs=41.7

Q ss_pred             CCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         12 KGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        12 ~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      .+|||.+.. ..+. |  +.+|+||+ +||++||+|++|||+++.+.+ +.++..+++
T Consensus        21 ~~~G~~l~~-~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~-~~~~~~~~~   75 (96)
T 2edv_A           21 QDYGFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLS-WERAVDILR   75 (96)
T ss_dssp             CSCSBCCCS-SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCC-HHHHHHHHH
T ss_pred             CcccEEEec-CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            477877754 2222 2  46899996 999999999999999999987 888888775

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.91  E-value=3e-09  Score=76.00  Aligned_cols=56  Identities=25%  Similarity=0.348  Sum_probs=46.2

Q ss_pred             cCCeEEEEEEc---CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAET---PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~---~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+|+.+...   ..+.+   +.+||||+++||++||+|++|||+++.+|. .+++..+|++
T Consensus        84 ~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~  145 (388)
T 1fc6_A           84 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMS-LYDVSDLLQG  145 (388)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHCB
T ss_pred             eEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            56788888765   23332   468999999999999999999999999997 8899888864

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-09  Score=63.78  Aligned_cols=54  Identities=19%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             CCeEEEEEEcCC-C-eE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         12 KGYCIIIAETPD-G-KV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        12 ~g~~i~l~~~~~-~-~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .++||.+....+ . .+    +.++|||+++ ||++||+|++|||+++.++  ++++..+++.
T Consensus        21 ~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~--~~~~~~~~~~   81 (100)
T 2edp_A           21 APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS--RQEALILIKG   81 (100)
T ss_dssp             SCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC--SHHHHHHHHT
T ss_pred             CCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch--HHHHHHHHHh
Confidence            477777765332 1 22    3589999999 9999999999999999985  4577777654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.83  E-value=1.3e-09  Score=78.45  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=44.4

Q ss_pred             cCCeEEEEEEcCCC-----eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG-----KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-----~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+.....+     .+   +.+||||+++| |++||+|++|||+++.+|+ ++++..+++.
T Consensus       215 ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~-~~~~~~~l~~  279 (388)
T 3suz_A          215 GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP-LATCQGIIKG  279 (388)
T ss_dssp             SCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCC-STTHHHHTTT
T ss_pred             CCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCC-HHHHHHHHHh
Confidence            45777777654433     22   46899999999 9999999999999999998 8888888865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.82  E-value=8.8e-09  Score=78.76  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=49.6

Q ss_pred             ceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+ ..|+||.+....+        +.+   +.+|+||+++| |+.||+|++|||+++.+++ +++++.+++.
T Consensus        63 v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~  136 (721)
T 2xkx_A           63 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT-HSAAVEALKE  136 (721)
T ss_pred             EEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHhhc
Confidence            34444 6799999986432        122   46899999999 9999999999999999999 9999988864

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.81  E-value=3.5e-09  Score=63.70  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.++.   ++...++
T Consensus        42 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l~   78 (113)
T 2pzd_A           42 VILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVR   78 (113)
T ss_dssp             EBTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHHH
T ss_pred             eCCCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHHh
Confidence            458999999999999999999999999766   6666553

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.80  E-value=4.3e-09  Score=61.14  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960         30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT   63 (69)
Q Consensus        30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~   63 (69)
                      +|||+++||++||+|++|||+++.+|.++.+++.
T Consensus        29 ~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~   62 (87)
T 2i6v_A           29 PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQ   62 (87)
T ss_dssp             HHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHH
T ss_pred             CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            4456999999999999999999999984444444

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.79  E-value=1.7e-09  Score=64.07  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=32.1

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++|||++ ||++||+|++|||+++.+++   ++..+|+.
T Consensus         8 V~~~spA~~-GL~~GD~I~~InG~~v~~~~---~l~~~l~~   44 (91)
T 2kjp_A            8 VVENMPAKG-KIEVGDKIISADGKNYQSAE---KLIDYISS   44 (91)
T ss_dssp             CCCSSCCSS-CCCSSCEEEEETTBCCSSHH---HHHHHHSS
T ss_pred             ECCCChHHH-cCCCCCEEEEECCEECCCHH---HHHHHHHc
Confidence            468999999 99999999999999999887   77776654

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.76  E-value=6.1e-09  Score=62.63  Aligned_cols=36  Identities=28%  Similarity=0.501  Sum_probs=31.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||+++||++||+|++|||+++.++.   ++...+
T Consensus        42 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l   77 (112)
T 2p3w_A           42 VAPNSPSQRGGIQDGDIIVKVNGRPLVDSS---ELQEAV   77 (112)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred             ECCCChHHHCCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            357999999999999999999999999887   555544

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.74  E-value=9e-09  Score=61.70  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960         30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT   63 (69)
Q Consensus        30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~   63 (69)
                      +|||+++||++||+|++|||+++.+|.++.+++.
T Consensus        47 as~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~   80 (105)
T 2i4s_A           47 PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQ   80 (105)
T ss_dssp             THHHHHHTCCTTCEEEEETTEETTSTTHHHHHHH
T ss_pred             CCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence            3455999999999999999999999995544444

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.73  E-value=5.9e-09  Score=65.19  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||+ +||++||+|++|||+++.+|+   ++...+
T Consensus        64 V~~~spA~-aGL~~GD~I~~inG~~v~~~~---~l~~~l   98 (134)
T 2l97_A           64 VQSNMPAN-GHLEKYDVITKVDDKEIASST---DLQSAL   98 (134)
T ss_dssp             CSTTSGGG-TTSCSSCEEEEETTEECCCHH---HHHHHH
T ss_pred             ECCCCchH-HCCCCCCEEEEECCEEcCCHH---HHHHHH
Confidence            35899999 999999999999999999988   555544

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.71  E-value=1.8e-08  Score=65.46  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=42.4

Q ss_pred             cCCeEEEEEEc-----CCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         11 LKGYCIIIAET-----PDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        11 ~~g~~i~l~~~-----~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..++|+.+...     ..+.+   +.+||||+++| |++||+|++|||+++.+++ ++++.++|+
T Consensus       118 ~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~  181 (196)
T 1p1d_A          118 SVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCS-MEDAVQILQ  181 (196)
T ss_dssp             SCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCC-HHHHHHHHH
T ss_pred             CCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence            34567766553     22323   35899999999 9999999999999999966 778888775

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.68  E-value=2.5e-08  Score=64.72  Aligned_cols=40  Identities=28%  Similarity=0.527  Sum_probs=35.8

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++|||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus       142 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~  182 (200)
T 2qt5_A          142 VRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQ  182 (200)
T ss_dssp             ECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred             ECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            45899999999 9999999999999999777 7799988864

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.67  E-value=2.4e-08  Score=72.72  Aligned_cols=46  Identities=24%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             cCCeEEEEEEcCCC---e---E--EecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960         11 LKGYCIIIAETPDG---K---V--KLYGSPADKSDLEIGDEILEVNGKTFKDNC   56 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---~---i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~   56 (69)
                      ..|+++.+....++   .   |  +.+||||++|||++||+|++|||+++.+|+
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~  126 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV  126 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh
Confidence            67888888776542   1   2  468999999999999999999999999986

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.65  E-value=7e-09  Score=61.31  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=30.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||++ ||++||+|++|||+++.+++   ++..+++
T Consensus        12 V~~~spA~~-GL~~GD~Il~InG~~v~~~~---~l~~~l~   47 (94)
T 2kl1_A           12 VLPNMPAAG-RLEAGDRIAAIDGQPINTSE---QIVSYVR   47 (94)
T ss_dssp             CCTTSTTBT-TBCTTCEEEEETTBCCCCHH---HHHHHHH
T ss_pred             ECCCChHHh-CCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence            358999999 99999999999999999887   5555553

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.63  E-value=2.5e-08  Score=65.95  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=29.0

Q ss_pred             EecCChHhhcCCCCC-CEEEEECCEEeCCCCC
Q psy16960         27 KLYGSPADKSDLEIG-DEILEVNGKTFKDNCN   57 (69)
Q Consensus        27 v~~gspA~~aGLk~G-D~Il~Vng~~i~~~~~   57 (69)
                      +.++|||++|||++| |+|++|||+++.+|++
T Consensus        23 V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~   54 (209)
T 3rle_A           23 VQENSPGHRAGLEPFFDFIVSINGSRLNKDND   54 (209)
T ss_dssp             ECTTSHHHHTTCCTTTEEEEEETTEECCSSSS
T ss_pred             ECCCCHHHHCCCCcCCeEEEEECCEECcCHHH
Confidence            468999999999999 9999999999999984

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.58  E-value=8.7e-08  Score=60.86  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=39.8

Q ss_pred             CCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         12 KGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        12 ~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      ..+|+.+.   .+.+  +.+++||+++||++||+|++|||+++.+|. .+++...++
T Consensus       100 ~~lG~~~~---~g~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~-~~~v~~~v~  152 (166)
T 1w9e_A          100 GHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLK-DSQIADILS  152 (166)
T ss_dssp             SCCSEEEE---TTEEEEECTTSHHHHTTCCSSEEEEEETTEECTTCC-HHHHHHHHH
T ss_pred             CcEeEEEe---CCEEEEEccCCHHHHcCCCCCCEEEEECCEECCCCC-hHHHHHHHh
Confidence            44555554   2343  468999999999999999999999999998 887766553

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.57  E-value=2.9e-08  Score=70.40  Aligned_cols=37  Identities=32%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+||||++|||++||+|++|||+++.++.   ++...|.
T Consensus       270 V~~~spA~~aGL~~GDvI~~ing~~v~~~~---~l~~~l~  306 (345)
T 3stj_A          270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRIA  306 (345)
T ss_dssp             ECTTSHHHHHTCCTTCEECEETTEECSCHH---HHHHHHH
T ss_pred             eccCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence            468999999999999999999999999888   6665554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.56  E-value=1.6e-07  Score=71.88  Aligned_cols=56  Identities=34%  Similarity=0.523  Sum_probs=45.9

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+  +.+   +.+||||+++| |++||+|++|||+++.+.+ +++++++|+.
T Consensus       317 ~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~-~~e~~~~l~~  378 (721)
T 2xkx_A          317 STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN  378 (721)
T ss_pred             CCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            4678888765432  333   46899999999 9999999999999999988 8899998864

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.56  E-value=4.8e-08  Score=68.30  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=32.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+||||+++||++||+|++|||+++.+++   ++.+.++
T Consensus       263 V~~~spA~~aGl~~GDvI~~ing~~v~~~~---~l~~~l~  299 (325)
T 1lcy_A          263 VILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVR  299 (325)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHHT
T ss_pred             eCcCChHHHCCCCCCCEEEEECCEEcCCHH---HHHHHHh
Confidence            458999999999999999999999999887   6666654

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.55  E-value=5.9e-08  Score=60.48  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+++||+++ |++||+|++|||+++.+|+   ++...++
T Consensus        32 V~~~spA~~a-L~~GD~Il~InG~~v~~~~---dl~~~l~   67 (125)
T 2hga_A           32 VVPGSPASKV-LTPGLVIESINGMPTSNLT---TYSAALK   67 (125)
T ss_dssp             ECSSSGGGGT-SCTTCEEEEETTEECSSHH---HHHHHHT
T ss_pred             ECCCChHHHh-cCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            3589999999 9999999999999999988   5655554

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.55  E-value=3.8e-08  Score=68.37  Aligned_cols=36  Identities=11%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||+++|||+||+|++|||+++.+|.   ++...+
T Consensus       249 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~l~~~l  284 (324)
T 1y8t_A          249 VVAGGAAANAGVPKGVVVTKVDDRPINSAD---ALVAAV  284 (324)
T ss_dssp             ECTTSTTTTTTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred             ECCCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            468999999999999999999999999988   555555

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.55  E-value=3.1e-08  Score=68.87  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.++.   ++..+|+
T Consensus       251 V~~~spA~~aGL~~GD~I~~ing~~v~~~~---~l~~~l~  287 (318)
T 1te0_A          251 VSPDGPAANAGIQVNDLIISVDNKPAISAL---ETMDQVA  287 (318)
T ss_dssp             ECTTSTTTTTCCCTTCCEEEETTEECCCHH---HHHHHHH
T ss_pred             eCCCChHHHCCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            468999999999999999999999999887   6666554

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.47  E-value=1.9e-07  Score=70.65  Aligned_cols=50  Identities=14%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960         13 GYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT   63 (69)
Q Consensus        13 g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~   63 (69)
                      +.|+.+....++.+   |.+||||++|||++||+|++|||+++. +.++.+++.
T Consensus       486 ~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~~~l~~~l~  538 (597)
T 4fgm_A          486 NFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-EQSVKRILE  538 (597)
T ss_dssp             CCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-TTTHHHHHT
T ss_pred             ccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-HHHHHHHHH
Confidence            55666655433332   468999999999999999999999994 663555554

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.45  E-value=2.2e-08  Score=71.99  Aligned_cols=40  Identities=20%  Similarity=0.572  Sum_probs=0.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++||++||+|++|||+++.+++ ++++++.++.
T Consensus       322 V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s-~~~~~~~l~~  361 (388)
T 3suz_A          322 LMRGGIAERGGVRVGHRIIEINGQSVVATA-HEKIVQALSN  361 (388)
T ss_dssp             -----------------------------------------
T ss_pred             eecCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            468999999999999999999999999888 8899888764

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.43  E-value=1.4e-07  Score=68.44  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++||++||+|++|||+++.+|+   ++.++|+.
T Consensus       370 V~~~spA~~aGL~~GD~I~~vng~~v~~~~---~~~~~l~~  407 (436)
T 4a8c_A          370 VVKGSPAAQAGLQKDDVIIGVNRDRVNSIA---EMRKVLAA  407 (436)
T ss_pred             eCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHHh
Confidence            458999999999999999999999999888   66666643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.42  E-value=1.5e-07  Score=68.92  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.++|||++|||++||+|++|||+++.+|+   ++...+
T Consensus       289 V~~~spA~~aGL~~GDvI~~vnG~~v~~~~---~l~~~l  324 (451)
T 3pv2_A          289 VNPNSPAELAGLKAGDIITQINDTKITQAT---QVKTTI  324 (451)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred             cCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHH
Confidence            468999999999999999999999999998   555544

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.41  E-value=1.7e-07  Score=68.08  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||+++||++||+|++|||+++.+|+   ++...+
T Consensus       270 V~~~spA~~aGL~~GD~I~~vnG~~v~~~~---~l~~~l  305 (436)
T 4a8c_A          270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRI  305 (436)
T ss_pred             ECCCChHHHCCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            468999999999999999999999999998   444444

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.38  E-value=1.6e-07  Score=66.15  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             EecCChHhhcCCCC-----------CCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEI-----------GDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~-----------GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||++|||++           ||+|++|||+++.+|+   ++...|.
T Consensus       258 V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~---dl~~~l~  305 (348)
T 3qo6_A          258 APPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGS---DLYRILD  305 (348)
T ss_dssp             CCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSH---HHHHHHT
T ss_pred             ecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHH---HHHHHHH
Confidence            35899999999999           9999999999999998   6666663

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.37  E-value=4.3e-08  Score=68.53  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      +.+||||+++||++||+|++|||+++.+++   ++...+
T Consensus       261 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l  296 (332)
T 3num_A          261 VIPDTPAEAGGLKENDVIISINGQSVVSAN---DVSDVI  296 (332)
T ss_dssp             ---------------------------------------
T ss_pred             eccCCChHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence            468999999999999999999999999888   554444

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.37  E-value=2.5e-07  Score=67.66  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=33.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++||++||+|++|||+++.+++   ++.+.++.
T Consensus       393 V~~gspA~~aGL~~GD~I~~Vng~~v~~~~---~~~~~l~~  430 (451)
T 3pv2_A          393 ASENSAGWRAGIRPGDIIISANKKPVTDVK---SLQTIAQE  430 (451)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHTTS
T ss_pred             ECCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHhc
Confidence            458999999999999999999999999887   77776654

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.34  E-value=2.3e-07  Score=61.32  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             EecCChHhhcCCCC-CCEEEEECCEEeCCCCChHHHHHh
Q psy16960         27 KLYGSPADKSDLEI-GDEILEVNGKTFKDNCNHNEVITH   64 (69)
Q Consensus        27 v~~gspA~~aGLk~-GD~Il~Vng~~i~~~~~~~ev~~~   64 (69)
                      +.++|||++|||++ ||+|++|||+ +.+++++.++++.
T Consensus       119 V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~  156 (209)
T 3rle_A          119 VESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIET  156 (209)
T ss_dssp             ECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHH
T ss_pred             eCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHh
Confidence            46899999999999 9999999998 9999955555543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.28  E-value=1e-06  Score=67.73  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             cCCeEEEEEEcCCCeE---EecC--------ChHhhcC--CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYG--------SPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~g--------spA~~aG--Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.|+|+.+....++.+   +.+|        |||+++|  |+ ||+|++|||+++.++.   ++..+|++
T Consensus       736 ~~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~---~~~~~~~~  801 (1045)
T 1k32_A          736 SGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS---NIYRVLSE  801 (1045)
T ss_dssp             CCBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB---CHHHHHHT
T ss_pred             cceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh---hHHHhhcC
Confidence            4588888876544332   3466        9999999  99 9999999999999987   66666654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.17  E-value=3e-07  Score=67.23  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+||||+++||++||+|++|||+++.+|.   ++...+.
T Consensus       293 V~~gspA~~AGL~~GDvI~~inG~~v~~~~---~l~~~l~  329 (448)
T 1ky9_A          293 VLPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQVG  329 (448)
T ss_dssp             CTTCSSSTTTTCCTTCEECBSSSSBCCSSH---HHHHHTT
T ss_pred             eccCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence            357999999999999999999999999998   6666654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.07  E-value=4.9e-07  Score=66.08  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=0.0

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.+||||+++||++||+|++|||+++.+++   ++.++++
T Consensus       390 V~~gspA~~aGL~~GDiI~~vng~~v~~~~---~l~~~l~  426 (448)
T 1ky9_A          390 VKTGTPAAQIGLKKGDVIIGANQQAVKNIA---ELRKVLD  426 (448)
T ss_dssp             ----------------------------------------
T ss_pred             ecCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence            468999999999999999999999999888   5555554

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.16  E-value=0.00029  Score=53.16  Aligned_cols=29  Identities=24%  Similarity=0.123  Sum_probs=25.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNC   56 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~   56 (69)
                      +.+||||+++ ||+||.|++|||++|.+..
T Consensus       284 V~~~spA~~a-l~~GDvI~~idg~~V~~~g  312 (539)
T 4fln_A          284 VEPTSDASKV-LKEGDVIVSFDDLHVGCEG  312 (539)
T ss_dssp             ECTTSGGGGT-CCTTCEEEEETTEECBSSS
T ss_pred             ccCCChHHhC-ccCCCEEEEECCEEeCcCC
Confidence            4689999987 9999999999999997654

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.11  E-value=0.00028  Score=53.24  Aligned_cols=38  Identities=13%  Similarity=0.072  Sum_probs=32.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.++++|..+|++.||+|++|||++|.+..   ++.++|+.
T Consensus       422 V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~---~l~~~l~~  459 (539)
T 4fln_A          422 VLANEVNIGYEDMNNQQVLKFNGIPIRNIH---HLAHLIDM  459 (539)
T ss_dssp             ECCCGGGTTCSSCCSEEEEEETTEECCSHH---HHHHHHHT
T ss_pred             ecCCchhhhcCCCCCCEEEeECCEEcCCHH---HHHHHHHH
Confidence            357999999999999999999999999887   66666543

>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A

Probab=89.86  E-value=0.097  Score=40.13  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=26.1

Q ss_pred             EEEEEEcCCCeEEecCChHhhcCCCCCCEEEEECCEEeCCC
Q psy16960         15 CIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDN   55 (69)
Q Consensus        15 ~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il~Vng~~i~~~   55 (69)
                      ++.+....++++.+.+..+..++++.||+|++|||+++..|
T Consensus        87 Pf~vki~iDG~i~V~dv~~~~s~I~vGdEIlsING~pv~e~  127 (583)
T 3dor_A           87 PYTVQKSSDGRFYFVDIMTFSSEIRVGDELLEVDGAPVQDV  127 (583)
T ss_dssp             SEEEEECTTSCEEEEEECSSCCSSCTTCEEEEETTEEHHHH
T ss_pred             CeEEEEEECCcEEEEeccccccCCCCCCEEEEECCccHHHH
Confidence            45555355565533222222237999999999999997644

>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A

Probab=82.50  E-value=1  Score=24.49  Aligned_cols=31  Identities=13%  Similarity=0.012  Sum_probs=25.0

Q ss_pred             EEEEEEcCCCeEEecCChHhhcCCCCCCEEE
Q psy16960         15 CIIIAETPDGKVKLYGSPADKSDLEIGDEIL   45 (69)
Q Consensus        15 ~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il   45 (69)
                      +........++|+.|-.-.++.||++||.+.
T Consensus        13 ~~~~kv~~kGqItIPkeiR~~Lgi~~Gd~l~   43 (59)
T 1yfb_A           13 GIVRKVDELGRVVIPIELRRTLGIAEKDALE   43 (59)
T ss_dssp             CEEEECCTTCEEECCHHHHHHTTCCTTCEEE
T ss_pred             eeEEEECCCCEEEeCHHHHHHcCCCCCCEEE
Confidence            3445556778899998888999999999985

>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A

Probab=81.57  E-value=1  Score=27.96  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             cCCeEEEEEEc-----CCCeEEecCChHhhcCCCCCCEEEE
Q psy16960         11 LKGYCIIIAET-----PDGKVKLYGSPADKSDLEIGDEILE   46 (69)
Q Consensus        11 ~~g~~i~l~~~-----~~~~iv~~gspA~~aGLk~GD~Il~   46 (69)
                      -.||||+....     ...-|.++-+.-.+-||+.||.|..
T Consensus        59 ~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g   99 (130)
T 1a62_A           59 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG   99 (130)
T ss_dssp             TTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEE
T ss_pred             CCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEE
Confidence            47999999762     1223445444445559999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	7e-07
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	2e-06
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	8e-06
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	8e-06
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-05
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-05
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	4e-05
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	5e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	7e-05
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-04
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	3e-04
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	3e-04
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	4e-04
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-04
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	6e-04
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	6e-04
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-04
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-04
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-04
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	0.001
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	0.001
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	0.001
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	0.001
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	0.001
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	0.002
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	0.002
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.002
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	0.002
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.002
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.003
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	0.003
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.003
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	0.003
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	0.004

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 7e-07
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
          G PA+++ L+  D +L++N +  + +    E+   I   
Sbjct: 28 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEIRSC 65

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
          GSPA+K+ L  GD ++EVNG+  +    H +V++ I   
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVE-KETHQQVVSRIRAA 74

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 8e-06
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A +S L  GD ++ ++G        H E    I
Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNTD-TMTHLEAQNKI 69

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 8e-06
 Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G  A++  + +G  I+E+NG++      H +++  + +  
Sbjct: 30 GGIAERGGVRVGHRIIEINGQSV-VATPHEKIVHILSNAV 68

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (86), Expect = 1e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
            P D   L+  D +L+VN    + + +   V+  I + 
Sbjct: 42 AGPGDLGGLKPYDRLLQVNHVRTR-DFDCCLVVPLIAES 79

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
            PA ++ + +GD++LEVNG   +    H+E +  +   
Sbjct: 49 EGPAARAGVRVGDKLLEVNGVALQ-GAEHHEAVEALRGA 86

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
             A+ +DL  GD I+ +NG++  +N  H E  + I   +
Sbjct: 40 RGKAEAADLRPGDIIVAINGQSA-ENMLHAEAQSKIRQSA 78

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 35.3 bits (81), Expect = 5e-05
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 23 DGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          D KV  Y           +   L+ GD  + +NG    D    N +   ++
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMN 65

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 7e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
          G  A ++ L +GD ++EVNG+       H +V+  I   
Sbjct: 53 GGVAWRAGLRMGDFLIEVNGQNVV-KVGHRQVVNMIRQG 90

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 3e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA K+  L+ GD I+EV+G   + + +H + +  I    
Sbjct: 46 DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAIRKAG 85

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA    L  GD++L++NG+      + ++    +    
Sbjct: 35 NSPASLVGLRFGDQVLQINGENCA-GWSSDKAHKVLKQAF 73

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          GS A  ++L  GD IL ++G    ++  H +    I   S
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGT-ESMTHADAQDRIKAAS 77

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (76), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
          G  A ++ + IGD +L ++G +      H E    I 
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISA-QGMTHLEAQNKIK 74

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G  A+++  L  G ++LE NG     +  + EV + I   S
Sbjct: 59 GGSAEQTGKLMEGMQVLEWNGIPL-TSKTYEEVQSIISQQS 98

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
            PA K  L+ GD+I++ NG +F  N  H + ++ +    
Sbjct: 53 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLLKTFQ 90

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 6e-04
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           S A ++ L+ GD++L VN   F  +  H++ +  +
Sbjct: 51 DSDAHRAGLQEGDQVLAVNDVDF-QDIEHSKAVEIL 85

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 7e-04
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)

Query: 12 KGYCIIIAETPDGKVKLY------GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITH 64
           G+   I    +    L         PA +   +E GD I+ +N         H +V+  
Sbjct: 30 MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL-GHTHADVVKL 88

Query: 65 I 65
           
Sbjct: 89 F 89

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 7e-04
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A+ S L++GD+ILEVNG++F  N  H+E +  +
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSFL-NILHDEAVRLL 90

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 8e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS A+K  L +GD+IL VN K+      H E +  +
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSLA-RVTHAEAVKAL 79

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 4/33 (12%), Positives = 11/33 (33%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
          G  A  + +  G  + +V+ +           +
Sbjct: 26 GGAAANAGVPKGVVVTKVDDRPINSADALVAAV 58

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
          G PAD   L+  D ++ VNG   + +  H+  +  +   
Sbjct: 49 GGPADGL-LQENDRVVMVNGTPME-DVLHSFAVQQLRKS 85

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.3 bits (73), Expect = 0.001
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
             A  +  + GD I+ + G   K     +EV+  +
Sbjct: 46 HCSASLAGAKEGDYIVSIQGVDCK-WLTVSEVMKLL 80

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          GS + +  LEIGD+I+EVNG  F  N +H E +  +
Sbjct: 44 GSLSAEVGLEIGDQIVEVNGVDF-SNLDHKEAVNVL 78

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 13 GYCIIIAETPDGKVKLY------GSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITH 64
           +   +    D K+ +       G+PAD     L  GD+++ +NG+       H++V+  
Sbjct: 21 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA-EHTHDQVVLF 79

Query: 65 I 65
          I
Sbjct: 80 I 80

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G    K   L+ GD+++ +N ++     +  E  + I
Sbjct: 44 GGDCYKDGRLKPGDQLVSINKESMI-GVSFEEAKSII 79

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 12 KGYCIIIAETPDGKVKLY------GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITH 64
              I I+ T +    +       G  A+++  + IGD IL +N  + K     +E I  
Sbjct: 14 GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK-GKPLSEAIHL 72

Query: 65 IHDPS 69
          +    
Sbjct: 73 LQMAG 77

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.4 bits (71), Expect = 0.002
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
           SPA++   L++GD +L +NG   + +    E    +
Sbjct: 48 DSPAERCGLLQVGDRVLSINGIATE-DGTMEEANQLL 83

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.002
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          GS A ++ LE GD++LE NG   + +    +    I    
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLR-SATEQQARLIIGQQC 90

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.4 bits (71), Expect = 0.002
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 12 KGYCIIIAETPDGKVKLY------GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITH 64
           G+   I    +    +          AD+   L  GDE++ V+G        H  VI  
Sbjct: 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA-GKTHRYVIDL 78

Query: 65 I 65
          +
Sbjct: 79 M 79

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (70), Expect = 0.003
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          G  A     L++G  ILEVNG T +    H E    I
Sbjct: 42 GGSAHNCGQLKVGHVILEVNGLTLR-GKEHREAARII 77

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (70), Expect = 0.003
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 12 KGYCIIIAETPD-GKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
          +G+   IA++P   +VK          L  GD I+E+N +  + N +H EV+  +
Sbjct: 21 QGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ-NLSHTEVVDIL 74

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.0 bits (70), Expect = 0.003
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
          G  A+KS  L  GDE+LE+NG   +   + NEV   + D  
Sbjct: 51 GGAAEKSGLLHEGDEVLEINGIEIR-GKDVNEVFDLLSDMH 90

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 30.6 bits (69), Expect = 0.003
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
           SPA     L++GD IL +NGK    N     VI  I +  
Sbjct: 45 DSPAHLCGRLKVGDRILSLNGKDV-RNSTEQAVIDLIKEAD 84

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.3 bits (68), Expect = 0.004
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
           S A ++ L     I E+NG+        +++   +   
Sbjct: 33 DSSAARNGLLTEHNICEINGQNVI-GLKDSQIADILSTS 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.53
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.51
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.5
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.44
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.42
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.4
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.4
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.39
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.37
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.37
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.36
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.35
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.33
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.33
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.33
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.32
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.31
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.31
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.3
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.29
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.29
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.29
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.29
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.27
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.27
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.27
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.26
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.26
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.25
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.25
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.25
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.25
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.25
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.24
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.21
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.21
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.2
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.2
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.2
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.19
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.18
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.17
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.17
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.16
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.16
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.15
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.14
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.12
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.07
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.07
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.07
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.06
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.02
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.01
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.96
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.9
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.89
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.78
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.73
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.72

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=83.00  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+||||.+.....-.+  +.+||||+++||+.||+|++|||+++.+|+ +++++..|+++
T Consensus         7 ~~g~Gf~l~~~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~v~~~i~~~   65 (77)
T d2f5ya1           7 KDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK-CVELAHEIRSC   65 (77)
T ss_dssp             TTBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCcccEEEECCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHCC
Confidence            6889999975333233  568999999999999999999999999999 99999999865

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.51  E-value=2.3e-14  Score=84.29  Aligned_cols=58  Identities=24%  Similarity=0.348  Sum_probs=48.8

Q ss_pred             ccCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         10 DLKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        10 ~~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|.|+|+.+......  .+    +.+||||++|||++||+|++|||+++.+++ +++++++|+++
T Consensus         3 ~~~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~-~~~~~~~l~g~   66 (92)
T d1fc6a3           3 SVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMS-LYDVSDLLQGE   66 (92)
T ss_dssp             SCBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHCBS
T ss_pred             ceEEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCC-HHHHHHHhhCC
Confidence            378999998765432  22    357999999999999999999999999999 99999999753

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.1e-14  Score=83.04  Aligned_cols=63  Identities=27%  Similarity=0.449  Sum_probs=53.3

Q ss_pred             CceEec-cCCeEEEEEEcCCC--eE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          5 PSHMID-LKGYCIIIAETPDG--KV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~--~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|.+.+ .+||||.+......  .+   +.+|+||+++||++||+|++|||+++.+++ +++++++|+++
T Consensus         6 ~v~l~k~~~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t-~~e~~~ll~~~   74 (91)
T d1g9oa_           6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET-HQQVVSRIRAA   74 (91)
T ss_dssp             EEEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             EEEEEECCCeeeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            356665 78999999776543  22   468999999999999999999999999999 99999999865

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.8e-14  Score=82.19  Aligned_cols=62  Identities=16%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             ceEec--cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          6 SHMID--LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.|.+  ..++||.+...+++.+   +.+||||+++||++||+|++|||+++.+++ ++++.++|++.
T Consensus         6 v~l~k~~~~~lG~~l~~~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~v~~~lk~~   72 (85)
T d1w9ea1           6 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWS-SDKAHKVLKQA   72 (85)
T ss_dssp             EEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHHC
T ss_pred             EEEEeCCCCCEeEEEEeCCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCC-HHHHHHHHhcC
Confidence            44555  6679999987766543   568999999999999999999999999999 99999999753

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.2e-14  Score=87.19  Aligned_cols=62  Identities=16%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+++.+ ..||||.+.....-.|  +.+++||+++||++||+|++|||+++.+++ +++++++|+.
T Consensus        18 ~v~l~k~~~g~Gf~i~g~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~-~~ev~~llk~   82 (111)
T d1vaea_          18 GIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLT-VSEVMKLLKS   82 (111)
T ss_dssp             CCCEECCSSCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EEEEEECCCccCEEEECCccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCC-HHHHHHHHHc
Confidence            367777 8899999865332233  468999999999999999999999999999 9999999974

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.1e-13  Score=82.32  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=47.5

Q ss_pred             cCCeEEEEEEcCC---------------Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD---------------GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~---------------~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.||||.+.....               .. |  +.+||||++|||++||+|++|||+++.+++ +++++++|+++
T Consensus        16 ~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~-h~evv~~ik~~   90 (104)
T d1q3oa_          16 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG-HRQVVNMIRQG   90 (104)
T ss_dssp             TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHHT
T ss_pred             CCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCC-HHHHHHHHHcC
Confidence            4589998875432               11 2  458999999999999999999999999999 99999999754

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=80.07  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             ceEec-cC-CeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          6 SHMID-LK-GYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         6 ~~~~~-~~-g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.+.+ -+ +|||.+.   .+.|  +.+|+||+++||++||+|++|||+++.+++ +++++++|+..
T Consensus         8 V~l~k~~~g~~Gf~i~---~g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t-~~~~~~ll~~~   70 (82)
T d1r6ja_           8 ITMHKDSTGHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLK-DSQIADILSTS   70 (82)
T ss_dssp             EEEECCTTSCCCEEEE---TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCC-HHHHHHHHHHS
T ss_pred             EEEEeCCCCCcCEEEE---EEEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCC-HHHHHHHHHcC
Confidence            34445 34 4999884   3455  579999999999999999999999999999 99999999753

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.1e-13  Score=81.69  Aligned_cols=56  Identities=23%  Similarity=0.404  Sum_probs=48.9

Q ss_pred             cCCeEEEEEEcCCC-eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG-KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+. .+    +.+||||+++| |++||+|++|||+++.+++ ++++.++|++
T Consensus        12 ~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s-~~e~~~~l~~   73 (112)
T d1qaua_          12 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS-YDSALEVLRG   73 (112)
T ss_dssp             TTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             CCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCC-HHHHHHHHHc
Confidence            67999999876543 23    46899999999 9999999999999999999 9999999975

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-13  Score=78.37  Aligned_cols=54  Identities=17%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+.   ++.|  +.+||||+++||++||+|++|||+++.+++ +++++++|+.+
T Consensus        12 ~~~lGf~i~---~g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~-~~~~~~ll~~~   67 (79)
T d1y7na1          12 RYQLGFSVQ---NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATP-HEKIVHILSNA   67 (79)
T ss_dssp             TSCCCEEEE---TTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSC-HHHHHHHHHHC
T ss_pred             CCCcCEEEE---CCEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCC-HHHHHHHHHcC
Confidence            457788774   3455  579999999999999999999999999999 99999999754

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.9e-13  Score=77.70  Aligned_cols=61  Identities=28%  Similarity=0.481  Sum_probs=49.8

Q ss_pred             eEec-cCCeEEEEEEcCC--------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          7 HMID-LKGYCIIIAETPD--------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~--------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+.+ ..||||.+....+        +. |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.+
T Consensus         6 ~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~e~~~~lk~~   79 (92)
T d2fe5a1           6 NLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVR-HEEAVASLKNT   79 (92)
T ss_dssp             EEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCB-HHHHHHHHHTC
T ss_pred             EEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCC-HHHHHHHHHcC
Confidence            3444 7889999975321        11 2  46899999998 9999999999999999999 99999999864

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.7e-13  Score=78.70  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             ccCCeEEEEEEcCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         10 DLKGYCIIIAETPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        10 ~~~g~~i~l~~~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ...||||.+....+   .. |  +.+|+||++++|++||+|++|||+++.+++ +++++++|+..
T Consensus         9 ~~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s-~~ev~~~i~~~   72 (85)
T d1rgwa_           9 GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT-HLEAQNKIKSA   72 (85)
T ss_dssp             CSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCC-HHHHHHHHTTC
T ss_pred             CCCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            46789999875432   22 3  568999999999999999999999999999 99999999764

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-13  Score=78.67  Aligned_cols=62  Identities=16%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             ceEec--cCCeEEEEEEcCCCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          6 SHMID--LKGYCIIIAETPDGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.|.+  ..++||.+....++.+    +.+||||+++| |++||+|++|||+++.+++ +++++++|++.
T Consensus         5 V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~-~~~~~~ll~~~   73 (88)
T d1kwaa_           5 VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT-VEQLQKMLREM   73 (88)
T ss_dssp             EEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSC-HHHHHHHHHHC
T ss_pred             EEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            45554  5689999876554443    46899999999 9999999999999999999 99999999754

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=7.5e-13  Score=77.73  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..+|||.+....+  +.+   +.+|+||+++||++||+|++|||+++.+++ +.+++.+|+..
T Consensus        18 ~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t-~~~~~~~l~~~   79 (91)
T d1m5za_          18 MEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFD-CCLVVPLIAES   79 (91)
T ss_dssp             CSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHTS
T ss_pred             CCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCC-HHHHHHHHHCC
Confidence            4679999876442  332   468999999999999999999999999999 99999999864

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=77.43  Aligned_cols=57  Identities=26%  Similarity=0.443  Sum_probs=48.2

Q ss_pred             cCCeEEEEEEcCCC--------e--E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG--------K--V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--------~--i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+......        .  |  +.+||||+++||++||+|++|||+++.+++ +.+++++|++.
T Consensus        18 ~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~   86 (97)
T d1x5qa1          18 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAE-HHEAVEALRGA   86 (97)
T ss_dssp             SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHSC
T ss_pred             CCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCC-HHHHHHHHhCC
Confidence            67899998754321        1  2  468999999999999999999999999999 99999999764

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=79.72  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=51.9

Q ss_pred             eEec-cCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          7 HMID-LKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|.+ -.|+||.+....+..+    +.+|+||+++||++||+|++|||+++.+++ +++++.+|+.+
T Consensus        24 ~l~k~~~glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~-~~~~~~~l~~~   89 (117)
T d1uita_          24 KVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSAT-EQQARLIIGQQ   89 (117)
T ss_dssp             EEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCC-HHHHHHHTTSC
T ss_pred             EEEeCCCccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCC-HHHHHHHHHCC
Confidence            3444 5689999987666543    468999999999999999999999999999 99999999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=76.52  Aligned_cols=60  Identities=18%  Similarity=0.350  Sum_probs=49.3

Q ss_pred             EeccCCeEEEEEEcCCC-----eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          8 MIDLKGYCIIIAETPDG-----KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~~~-----~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.+-.|+||.+....+.     .+    +.+||||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        10 l~~~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~ea~~~l~~~   79 (92)
T d1t2ma1          10 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS-QERAAELMTRT   79 (92)
T ss_dssp             EECSSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCC-HHHHHHHHHSC
T ss_pred             EeCCCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCC-HHHHHHHHHcC
Confidence            44567888888654321     12    46899999999 9999999999999999999 99999999864

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6.7e-13  Score=79.46  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=50.2

Q ss_pred             ceEec--cCCeEEEEEEcCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          6 SHMID--LKGYCIIIAETPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         6 ~~~~~--~~g~~i~l~~~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+.+  -.+|||.+....+   +. |  +.+++||+++||++||+|++|||+++.+++ +++++++|+.
T Consensus        19 V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~-~~ev~~llk~   87 (104)
T d1wi2a_          19 VTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIE-HSKAVEILKT   87 (104)
T ss_dssp             EEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence            45555  3579999975432   22 3  468999999999999999999999999999 9999999975

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=78.17  Aligned_cols=60  Identities=27%  Similarity=0.430  Sum_probs=49.6

Q ss_pred             eEec-cCCeEEEEEEcCC-C-e--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          7 HMID-LKGYCIIIAETPD-G-K--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         7 ~~~~-~~g~~i~l~~~~~-~-~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ++.+ .+||||.+....+ + .  |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        14 ~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t-~~e~~~~l~~   81 (103)
T d1uepa_          14 HLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT-HRYVIDLMHH   81 (103)
T ss_dssp             EEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred             EEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            4454 7889999975432 2 1  3  56899999998 9999999999999999999 9999999963

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.5e-12  Score=77.94  Aligned_cols=63  Identities=30%  Similarity=0.442  Sum_probs=53.1

Q ss_pred             CceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          5 PSHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .|+|.+ -+||||.+....+  +.+   +.+||||+++| |++||+|++|||.++.+++ +++++.+|+.+
T Consensus        12 ~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~-~~ev~~~l~~~   81 (102)
T d1tp5a1          12 RIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNA   81 (102)
T ss_dssp             EEEEECTTSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC-HHHHHHHHHTS
T ss_pred             EEEEEeCCCcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCC-HHHHHHHHHcC
Confidence            367765 7889999987543  332   46899999998 9999999999999999999 99999999764

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.6e-13  Score=78.36  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             cCCeEEEEEEcCCC-e-E----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG-K-V----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-~-i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+....+. . +    +.+|+||+++||++||+|++|||+++.+++ +++++++|+..
T Consensus        15 ~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~   77 (94)
T d1vb7a_          15 PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENML-HAEAQSKIRQS   77 (94)
T ss_dssp             SSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            67889988765542 2 2    358999999999999999999999999999 99999999764

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1e-12  Score=77.76  Aligned_cols=59  Identities=17%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             eccCCeEEEEEEcCC----C-e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          9 IDLKGYCIIIAETPD----G-K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         9 ~~~~g~~i~l~~~~~----~-~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+.+|+||.+....+    . . |  +.+||||+++| |++||+|++|||+++.+++ +++++++|++.
T Consensus        15 ~~~~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~ea~~~l~~~   82 (96)
T d1wi4a1          15 TKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS-FEEAKSIITRA   82 (96)
T ss_dssp             CCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCC-HHHHHHHHHHS
T ss_pred             cCCCccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhc
Confidence            347889999975432    1 2 2  46899999999 9999999999999999999 99999999753

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-12  Score=75.69  Aligned_cols=41  Identities=37%  Similarity=0.620  Sum_probs=38.2

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.+||||+++| |++||+|++|||+++.+++ +++++++|+.+
T Consensus        43 v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t-~~ea~~~lk~~   84 (96)
T d2fcfa1          43 VLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS-HEQAVEAIRKA   84 (96)
T ss_dssp             ECSSSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             ECCCCHHHHcCCCcCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            45899999998 9999999999999999999 99999999864

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=79.71  Aligned_cols=57  Identities=32%  Similarity=0.514  Sum_probs=48.7

Q ss_pred             cCCeEEEEEEcCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..+|||.+....+   +. |  +.+|+||+++||++||+|++|||+++.+++ +++++++|+..
T Consensus        31 ~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s-~~evv~~lr~~   93 (128)
T d1uf1a_          31 GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNIL-HDEAVRLLKSS   93 (128)
T ss_dssp             SCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHTTC
T ss_pred             CCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCC-HHHHHHHHhcC
Confidence            5689999986443   22 2  468999999999999999999999999999 99999999764

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=2.2e-12  Score=75.42  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             cCCeEEEEEEcCC--------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.|+||.+....+        +. |  +.+||||+++| |++||+|++|||+++.+++ +++++++|+.+
T Consensus        11 ~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~e~~~~l~~~   79 (93)
T d1rgra_          11 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT-HSAAVEALKEA   79 (93)
T ss_dssp             SSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSC-HHHHHHHHHHT
T ss_pred             CCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            5789998864221        22 3  56899999999 9999999999999999999 99999999753

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.8e-12  Score=75.19  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=47.9

Q ss_pred             cCCeEEEEEEcCC-C-eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD-G-KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~-~-~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.++||.+....+ + .+    +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.+
T Consensus        15 ~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~-~~~~~~~l~~~   78 (90)
T d1qava_          15 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKKT   78 (90)
T ss_dssp             TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            4578999875432 2 22    46899999999 9999999999999999999 99999999865

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=2e-12  Score=75.73  Aligned_cols=57  Identities=30%  Similarity=0.457  Sum_probs=46.8

Q ss_pred             cCCeEEEEEEcCC------C---e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD------G---K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~------~---~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.+|||.+....+      .   . |  +.+||||+++| |++||+|++|||+++.+++ +++++++|+.+
T Consensus        14 ~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~~~~ll~~~   83 (94)
T d1ihja_          14 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST-EQAVIDLIKEA   83 (94)
T ss_dssp             SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCC-HHHHHHHHHHS
T ss_pred             CCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            4579998865321      1   1 2  46899999998 9999999999999999999 99999999753

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-12  Score=77.99  Aligned_cols=62  Identities=23%  Similarity=0.426  Sum_probs=50.4

Q ss_pred             ceEec-cCCeEEEEEEcCC---------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          6 SHMID-LKGYCIIIAETPD---------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         6 ~~~~~-~~g~~i~l~~~~~---------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      |.+.+ -.||||.+....+         +. |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        11 v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~-~~ev~~~l~~~   86 (105)
T d1whaa_          11 ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR-HDHAVSLLTAA   86 (105)
T ss_dssp             EEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC-HHHHHHHHTSC
T ss_pred             EEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCc-HHHHHHHHHcC
Confidence            44554 7789999974321         12 2  46899999998 9999999999999999999 99999999864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.6e-12  Score=75.08  Aligned_cols=57  Identities=19%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             cCCeEEEEEEcCC----------CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD----------GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~----------~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.++||.+.....          ..+    +.+||||+++| |++||+|++|||+++.+++ +++++++|+++
T Consensus        14 ~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~~a~~~lk~~   85 (99)
T d1ozia_          14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGAT-HKQAVETLRNT   85 (99)
T ss_dssp             SSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCC-HHHHHHHHHHS
T ss_pred             CCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCC-HHHHHHHHHCC
Confidence            4567887764321          122    46899999999 9999999999999999999 99999999754

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-12  Score=77.12  Aligned_cols=57  Identities=28%  Similarity=0.416  Sum_probs=48.1

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+....+.  .+    +.+|+||+++||++||+|++|||+++.+++ +++++++|+..
T Consensus        20 ~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~-~~~v~~ll~~~   82 (101)
T d1ueza_          20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVT-HAEAVKALKGS   82 (101)
T ss_dssp             TTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCC-HHHHHHHSSSS
T ss_pred             CCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCC-HHHHHHHHhcC
Confidence            45799999765432  22    458999999999999999999999999999 99999999753

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=5.8e-12  Score=74.20  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             cCCeEEEEEEcCC--Ce--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD--GK--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~--~~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+....+  ..  |  +.+|+||+++| |++||+|++|||+++.+++ +++++.+|+..
T Consensus        13 ~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~-~~ev~~~l~~~   76 (95)
T d1n7ea_          13 GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP-LSEAIHLLQMA   76 (95)
T ss_dssp             TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred             CCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            6789999975543  22  2  46899999999 9999999999999999999 99999999764

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.7e-12  Score=76.14  Aligned_cols=56  Identities=32%  Similarity=0.437  Sum_probs=48.6

Q ss_pred             cCCeEEEEEEcCCC---eE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG---KV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....+.   .+   +.+|+||+++||++||+|++|||+++.+++ +++++++|+.
T Consensus        19 ~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~-~~~v~~~lk~   80 (101)
T d1x5na1          19 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD-HKEAVNVLKS   80 (101)
T ss_dssp             SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC-TTHHHHHHHH
T ss_pred             CCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCC-HHHHHHHHhC
Confidence            78899999875542   22   468999999999999999999999999999 9999999864

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.8e-12  Score=76.35  Aligned_cols=57  Identities=26%  Similarity=0.415  Sum_probs=47.0

Q ss_pred             cCCeEEEEEEcC-----------CCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETP-----------DGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~-----------~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.+|||.+....           .+. |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        18 ~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t-~~eav~~lk~~   89 (107)
T d1uhpa_          18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT-HDQAVEAFKTA   89 (107)
T ss_dssp             SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCC-HHHHHHHHHHC
T ss_pred             CCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCC-HHHHHHHHHhC
Confidence            567898886421           122 3  56899999998 9999999999999999999 99999999753

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.4e-12  Score=75.22  Aligned_cols=57  Identities=30%  Similarity=0.379  Sum_probs=48.7

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+.....+.+   +.+||||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        29 ~~~lG~~v~~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~-~~~~~~ll~~~   89 (100)
T d1va8a1          29 DIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD-VNEVFDLLSDM   89 (100)
T ss_dssp             TCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHHC
T ss_pred             CCCccEEEEecCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCC-HHHHHHHHHcC
Confidence            4578888876655543   46899999999 9999999999999999999 99999999754

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.2e-12  Score=72.61  Aligned_cols=57  Identities=28%  Similarity=0.401  Sum_probs=47.4

Q ss_pred             cCCeEEEEEEcCCC-----e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG-----K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-----~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..++||.+.....+     . |  +.+||||+++| |++||+|++|||+++.+++ ++++.++|+..
T Consensus         9 g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s-~~e~~~~l~~~   74 (85)
T d1x45a1           9 GEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP-LSTCQSIIKGL   74 (85)
T ss_dssp             TSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCC-HHHHHHHHHTT
T ss_pred             CCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            56788888654322     2 2  46899999998 9999999999999999999 99999999863

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.26  E-value=6.2e-12  Score=73.80  Aligned_cols=56  Identities=21%  Similarity=0.400  Sum_probs=47.2

Q ss_pred             cCCeEEEEEEcCC----CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+|+||.+....+    ..+    +.+||||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        12 ~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s-~~eav~llk~   76 (92)
T d2f0aa1          12 YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMS-NDDAVRVLRD   76 (92)
T ss_dssp             HCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred             CCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCC-HHHHHHHHHh
Confidence            5788999975432    122    46899999999 9999999999999999999 9999999863

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.5e-12  Score=76.96  Aligned_cols=59  Identities=19%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             EeccCCeEEEEEEcCCC-e-E----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MIDLKGYCIIIAETPDG-K-V----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~~~g~~i~l~~~~~~-~-i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +....||||.+....+. . +    +.+|+||++++|++||+|++|||+++.+++ +++++++|+.
T Consensus        11 ~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t-~~eav~li~~   75 (103)
T d1wf7a_          11 LVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMT-HLEAQNKIKA   75 (103)
T ss_dssp             EESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EECCCCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            34567889988776653 2 2    357999999999999999999999999999 9999999975

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.5e-12  Score=76.92  Aligned_cols=57  Identities=28%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             cCCeEEEEEEcC-----CC---e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETP-----DG---K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~-----~~---~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+|+||.+....     ++   . |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        29 g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s-~~e~~~~i~~~   97 (117)
T d1ujda_          29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT-YEEVQSIISQQ   97 (117)
T ss_dssp             CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCC-HHHHHHHHSCC
T ss_pred             CcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCc-HHHHHHHHHcC
Confidence            467888886432     11   1 2  46899999998 9999999999999999999 99999999864

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.8e-12  Score=73.66  Aligned_cols=57  Identities=23%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             cCCeEEEEEEcCC---C--eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD---G--KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~--~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.||||.+....+   +  .+    +.+++||+++| |++||+|++|||.++.+++ +++++++|++.
T Consensus        12 ~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~-~~~v~~~l~~~   78 (88)
T d2fnea1          12 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT-HEEAVAILKRT   78 (88)
T ss_dssp             TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHHC
T ss_pred             CCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            4688998864321   1  12    45899999998 9999999999999999999 99999999754

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=74.31  Aligned_cols=60  Identities=27%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             Eec-cCCeEEEEEEcCCC------e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          8 MID-LKGYCIIIAETPDG------K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         8 ~~~-~~g~~i~l~~~~~~------~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.+ -.|+||.+....+.      . |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        14 l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~-~~ev~~llk~~   84 (110)
T d1um1a_          14 LERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG-YLRAVDLIRHG   84 (110)
T ss_dssp             EECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC-HHHHHHHHHTC
T ss_pred             EEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            444 56788888765331      2 2  46899999998 9999999999999999999 99999999764

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.1e-12  Score=76.09  Aligned_cols=62  Identities=26%  Similarity=0.335  Sum_probs=51.6

Q ss_pred             CceEec-cCCeEEEEEEcCCC----e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          5 PSHMID-LKGYCIIIAETPDG----K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         5 ~~~~~~-~~g~~i~l~~~~~~----~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+.+.+ -.++||.+....+.    . |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|++
T Consensus         9 vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~e~~~~l~~   79 (103)
T d1ufxa_           9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE-HREAARIIAE   79 (103)
T ss_dssp             EEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCB-HHHHHHHHHH
T ss_pred             EEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCc-HHHHHHHHHH
Confidence            456666 67899999765432    1 3  46899999998 9999999999999999999 9999999974

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.7e-12  Score=76.92  Aligned_cols=57  Identities=23%  Similarity=0.409  Sum_probs=47.8

Q ss_pred             cCCeEEEEEEcCC---Ce--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD---GK--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+   ..  |  +.+||||+++| |++||+|++|||+++.+++ +++++++|++.
T Consensus        19 ~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~-~~ea~~~l~~~   83 (107)
T d1x6da1          19 GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT-HHDALAILRQA   83 (107)
T ss_dssp             TSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCC-HHHHHHHHHHT
T ss_pred             CCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCC-HHHHHHHHHcC
Confidence            5789999975422   22  2  46899999998 9999999999999999999 99999999753

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=4.6e-12  Score=75.14  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=38.1

Q ss_pred             EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +.+||||+++| |++||+|++|||.++.+++ +++++++|+.+
T Consensus        45 v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~   86 (98)
T d1rzxa_          45 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKT-LDQVTDMMVAN   86 (98)
T ss_dssp             ECTTCHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHHT
T ss_pred             ECCCChHHhcCcCCCCcEEeeECCEECCCCC-HHHHHHHHHcC
Confidence            46899999999 9999999999999999999 99999999754

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.3e-12  Score=73.75  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             cCCeEEEEEEcC------CC--e--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETP------DG--K--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~------~~--~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.|+||.+....      ..  .  |  +.+||||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        12 ~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~   81 (94)
T d1wf8a1          12 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT-QNFAATVLRNT   81 (94)
T ss_dssp             TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCC-HHHHHHHHHHC
T ss_pred             CCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            578888886421      11  1  2  46899999998 9999999999999999999 99999999753

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.7e-12  Score=75.83  Aligned_cols=57  Identities=33%  Similarity=0.638  Sum_probs=46.7

Q ss_pred             cCCeEEEEEEcCCC-----------eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG-----------KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-----------~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.+|||.+....+.           .|  +.+|+||+++| |++||+|++|||+++.+++ +++++++|++.
T Consensus        21 ~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~ev~~ll~~~   91 (114)
T d1uewa_          21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP-HADIVKLIKDA   91 (114)
T ss_dssp             TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSC-HHHHHHHHHHT
T ss_pred             CCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCc-HHHHHHHHHcC
Confidence            34799988753221           12  46899999998 9999999999999999999 99999999753

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.3e-11  Score=74.73  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=48.5

Q ss_pred             cCCeEEEEEEcCCC--e--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--K--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....+.  .  |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        29 ~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t-~~eav~~l~~   91 (123)
T d1ueqa_          29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT-HADVVKLFQS   91 (123)
T ss_dssp             TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred             CCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            77999999775432  2  2  46899999998 9999999999999999999 9999999975

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=6.9e-12  Score=74.16  Aligned_cols=57  Identities=18%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             cCCeEEEEEEcCC-----Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD-----GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~-----~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..|+||.+....+     +. |  +.+||||+++| |++||+|++|||+++.+++ +++++++|+++
T Consensus        21 ~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~e~~~ll~~~   86 (99)
T d1p1da2          21 SVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCS-MEDAVQILQQC   86 (99)
T ss_dssp             SCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCC-HHHHHHHHHHC
T ss_pred             CCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCC-HHHHHHHHHcC
Confidence            4568888865422     12 2  46899999999 9999999999999999999 99999999764

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4e-12  Score=76.66  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=47.3

Q ss_pred             cCCeEEEEEEcCC------------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD------------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~------------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..+|||.+....+            +. |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        20 ~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t-~~ea~~~lk~~   92 (111)
T d1ujua_          20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT-HGEAVQLLRSV   92 (111)
T ss_dssp             TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSC-HHHHHHHHSSC
T ss_pred             CCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCC-HHHHHHHHHcC
Confidence            3689999964221            12 2  46899999999 9999999999999999999 99999999864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=71.56  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=49.2

Q ss_pred             Eec-cCCeEEEEEEcCCCeE-EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960          8 MID-LKGYCIIIAETPDGKV-KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus         8 ~~~-~~g~~i~l~~~~~~~i-v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+ -.||||.+........ +....|+..++|++||+|++|||+++.+++ +++++++|+.
T Consensus        16 l~k~~~glGf~i~g~~~~~~~~~~~~~~~~~~L~~GD~Il~VNg~~v~~~t-~~evv~~lk~   76 (96)
T d1ujva_          16 IVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS-HTEVVDILKD   76 (96)
T ss_dssp             EECCSSSSSEEEEEETTEEEEEEESCGGGSTTCCSSCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             EEeCCCcccEEEEeeCCCceEeeccCcccccCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence            445 6789999988766543 445667777899999999999999999999 9999999974

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2e-11  Score=74.96  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=47.3

Q ss_pred             cCCeEEEEEEcCC-------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD-------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~-------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....+       .. |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|++
T Consensus        26 ~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~-~~e~~~~lk~   92 (122)
T d1v5qa_          26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST-FEEANQLLRD   92 (122)
T ss_dssp             SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSC-HHHHHHHHHH
T ss_pred             CCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCC-HHHHHHHHHc
Confidence            5689999976432       12 2  46899999998 9999999999999999999 9999999974

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.2e-11  Score=74.18  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=48.2

Q ss_pred             cCCeEEEEEEcCCC-e-E----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG-K-V----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~-~-i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      -.+|||.+....+. . +    +.+|+||++++|++||+|++|||+++.+++ +++++++|+..
T Consensus        14 ~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~-~~e~v~ll~~~   76 (103)
T d1v5la_          14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMT-HADAQDRIKAA   76 (103)
T ss_dssp             SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCC-HHHHHHHHTTC
T ss_pred             CCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            56788888765543 2 3    358999999999999999999999999999 99999999864

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.7e-12  Score=74.69  Aligned_cols=56  Identities=25%  Similarity=0.428  Sum_probs=46.3

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhc--CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKS--DLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~a--GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..+|||.+....+.  .+    +.+|+||+++  +|++||+|++|||+++.+++ +++++++|+.
T Consensus        19 ~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~-~~e~~~ll~~   82 (106)
T d2cs5a1          19 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLFIKA   82 (106)
T ss_dssp             SSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSC-HHHHHHHHHH
T ss_pred             CCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            44699998765432  22    4689999986  79999999999999999999 9999999863

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=5.4e-12  Score=78.16  Aligned_cols=56  Identities=13%  Similarity=0.169  Sum_probs=48.0

Q ss_pred             cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+........   +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        37 ~~GlG~~i~~~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~-~~e~~~llr~   96 (126)
T d1wifa_          37 NLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT-LREFLKLLQN   96 (126)
T ss_dssp             TTCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCC-HHHHHHHHTS
T ss_pred             CCcEEEEEEecCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEecc-HHHHHHHHhC
Confidence            5688888876544332   46899999999 9999999999999999999 9999999986

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-11  Score=73.48  Aligned_cols=56  Identities=27%  Similarity=0.469  Sum_probs=47.4

Q ss_pred             cCCeEEEEEEcCCC--eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPDG--KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      .+|+||.+....+.  .+    +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        21 ~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s-~~ev~~~l~~   83 (103)
T d1wfva_          21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT-HARAIELIKS   83 (103)
T ss_dssp             TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred             CCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCc-HHHHHHHHHc
Confidence            67899998765432  23    35899999998 9999999999999999999 9999999964

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.7e-11  Score=72.70  Aligned_cols=56  Identities=27%  Similarity=0.444  Sum_probs=46.8

Q ss_pred             cCCeEEEEEEcC-------CCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP-------DGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~-------~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..||||.+....       .+. |  +.+||||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus        19 ~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t-~~e~~~~lr~   85 (99)
T d1x5ra1          19 LSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGT-MEEANQLLRD   85 (99)
T ss_dssp             TTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSB-HHHHHHHHHH
T ss_pred             CCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            578999997432       112 2  46899999998 9999999999999999999 9999999974

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=76.17  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             cCCeEEEEEEcCC-----C-e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPD-----G-K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~-----~-~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+....+     . . |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|+..
T Consensus        39 ~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t-~~eav~~l~~~  105 (130)
T d1i16a_          39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT-RFEAWNIIKAL  105 (130)
T ss_dssp             SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSC-HHHHHHHHHTS
T ss_pred             CCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCc-HHHHHHHHHcC
Confidence            5689999975422     1 2 2  46899999999 9999999999999999999 99999999763

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.8e-11  Score=71.33  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             eccCCeEEEEEEcCC-----------Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960          9 IDLKGYCIIIAETPD-----------GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus         9 ~~~~g~~i~l~~~~~-----------~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .+-.++||.+....+           +. |  +.+|+||+++ |++||+|++|||+++.+++ +++++++|+..
T Consensus        18 ~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t-~~eav~~l~~~   89 (103)
T d2h3la1          18 EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE-HGQAVSLLKTF   89 (103)
T ss_dssp             ECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCC-HHHHHHHHHHC
T ss_pred             ccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence            345678888875432           12 2  4689999986 9999999999999999999 99999999753

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.8e-11  Score=72.81  Aligned_cols=56  Identities=30%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             cCCeEEEEEEcCC---C--eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---G--KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~--~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+   +  .+    +.+|+||+++| |++||+|++|||.++.+++ +++++++|+.
T Consensus        29 ~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t-~~ea~~~l~~   94 (108)
T d2cssa1          29 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGAT-NEEVYNIILE   94 (108)
T ss_dssp             SSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred             CCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence            4678888864321   1  22    46899999998 9999999999999999999 9999999964

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=3.7e-11  Score=69.40  Aligned_cols=49  Identities=10%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             eEEEEEEcCCC--e-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960         14 YCIIIAETPDG--K-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI   65 (69)
Q Consensus        14 ~~i~l~~~~~~--~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i   65 (69)
                      .||.+....+.  . |  +.+||||+++||++||+|++|||+++.+++   ++...+
T Consensus         5 LGv~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~---~~~~~i   58 (88)
T d2z9ia1           5 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSAD---ALVAAV   58 (88)
T ss_dssp             CCEEEECCC-CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred             EeEEEEecCCCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHH---HHHHHH
Confidence            45555554433  2 2  568999999999999999999999999887   555554

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=3.5e-11  Score=71.68  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=45.7

Q ss_pred             cCCeEEEEEEcCCC---------e-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         11 LKGYCIIIAETPDG---------K-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        11 ~~g~~i~l~~~~~~---------~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      ..||||.+....+.         . |  +.+||||+ ++|++||+|++|||+++.+++ +++++++|+.+
T Consensus        18 ~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~-~~ev~~ll~~~   85 (104)
T d2csja1          18 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVL-HSFAVQQLRKS   85 (104)
T ss_dssp             SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCC-HHHHHHHHHHS
T ss_pred             CCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence            45799998654321         1 2  46899997 689999999999999999999 99999999753

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.6e-11  Score=69.19  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++||++||+|++|||+++.+++   ++.++++.
T Consensus        32 V~~~spA~~aGl~~GDvI~~ing~~v~~~~---~~~~~l~~   69 (88)
T d1ky9b2          32 VKTGTPAAQIGLKKGDVIIGANQQAVKNIA---ELRKVLDS   69 (88)
T ss_dssp             CCSSCTTGGGTCCSSCEEEEETTEECSSHH---HHHHHTTT
T ss_pred             ECCCCHHHHcCCCCCcEEEEECCEEcCCHH---HHHHHHHh
Confidence            468999999999999999999999999777   77777754

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-10  Score=70.33  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             CCeEEEEEEcCC---CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         12 KGYCIIIAETPD---GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        12 ~g~~i~l~~~~~---~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      .++||.+....+   ..+    +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+..
T Consensus        27 ~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~v~~~l~~~   90 (117)
T d1v62a_          27 SALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS-LLEATKLLASI   90 (117)
T ss_dssp             CCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCC-HHHHHHHHHSC
T ss_pred             CCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCC-HHHHHHHHHcC
Confidence            468888875432   222    45899999998 9999999999999999999 99999999764

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.1e-11  Score=74.53  Aligned_cols=56  Identities=21%  Similarity=0.418  Sum_probs=45.8

Q ss_pred             cCCeEEEEEEcC---CC---e--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETP---DG---K--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~---~~---~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..|+||.+....   .+   .  |  +.+|+||+++| |++||+|++|||+++.+++ +++++++|++
T Consensus        36 ~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~-~~e~~~~lr~  102 (127)
T d1wg6a_          36 SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS-NHEAMETLRR  102 (127)
T ss_dssp             TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSC-HHHHHHHHHH
T ss_pred             CCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCC-HHHHHHHHHh
Confidence            457888886432   11   1  2  35899999998 9999999999999999999 9999999874

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.9e-10  Score=70.24  Aligned_cols=56  Identities=27%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             cCCeEEEEEEcCC---CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD---GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~---~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      -.++||.+....+   +.+    +.+|+||++.| |++||+|++|||.++.+++ +++++.+|++
T Consensus        27 ~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s-~~e~~~~l~~   90 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT-LAEAEAALQK   90 (118)
T ss_dssp             CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB-HHHHHHHHHH
T ss_pred             CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCc-HHHHHHHHHh
Confidence            5678888876543   233    35899999998 9999999999999999999 9999999863

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-10  Score=68.13  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=32.7

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||++|||++||+|++|||+++.+++   ++.+.++
T Consensus        38 V~~~spA~~aGl~~GDiI~~ing~~V~s~~---dl~~~l~   74 (100)
T d1lcya1          38 VILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVR   74 (100)
T ss_dssp             ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHHT
T ss_pred             ECCCchHhhcCCCCCcEEEEECCEEcCCHH---HHHHHhc
Confidence            468999999999999999999999999888   6766664

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=6.4e-10  Score=65.22  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960         30 GSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHDP   68 (69)
Q Consensus        30 gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~~   68 (69)
                      +|||+++|| |+||+|++|||+++.+|.   ++.++|++.
T Consensus        30 ~sPa~~aGl~k~GD~I~~IdG~~v~~~~---~~~~~l~g~   66 (91)
T d1k32a1          30 KSPIFEYGIDPTGYLIEDIDGETVGAGS---NIYRVLSEK   66 (91)
T ss_dssp             BCGGGGGTCCCTTCEEEEETTEECBTTB---CHHHHHHTT
T ss_pred             CChhHhcCCCCCCCEEEEECCEeecCcc---eeEEEEecC
Confidence            499999999 899999999999999998   777777653

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.9e-10  Score=67.25  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=41.5

Q ss_pred             cCCeEEEEEEcCC----CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         11 LKGYCIIIAETPD----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        11 ~~g~~i~l~~~~~----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      ..++||.+....+    ..+    +.+|+||+++| |++||+|++|||.++.+++   ++..+++.
T Consensus        31 ~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~---~~~~~l~~   93 (124)
T d1wh1a_          31 QDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE---EAVALLTS   93 (124)
T ss_dssp             TCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHH---HHHHHHTC
T ss_pred             CCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHH---HHHHHHhh
Confidence            4578888865432    122    46899999998 9999999999999998766   66666654

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.89  E-value=1.1e-09  Score=65.00  Aligned_cols=37  Identities=27%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD   67 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~   67 (69)
                      +.+||||+++ |++||+|++|||+++.+|+   ++...|+.
T Consensus        10 V~~~sPA~~~-L~~GD~I~~ing~~v~~~~---~l~~~i~~   46 (103)
T d2hgaa1          10 VVPGSPASKV-LTPGLVIESINGMPTSNLT---TYSAALKT   46 (103)
T ss_dssp             ECSSSGGGGT-SCTTCEEEEETTEECSSHH---HHHHHHTT
T ss_pred             ECCCChHHhc-CCCCCEEEEECCEEcCCHH---HHHHHHhh
Confidence            4789999985 9999999999999999888   77777754

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=4.3e-10  Score=65.57  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH   66 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~   66 (69)
                      +.++|||+++||++||+|++|||+++.++.   ++.+.+.
T Consensus        34 V~~~spA~~aGl~~gDvI~~i~g~~v~~~~---~l~~~l~   70 (94)
T d1ky9a1          34 VLPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQVG   70 (94)
T ss_dssp             CTTCSSSTTTTCCTTCEECBSSSSBCCSSH---HHHHHTT
T ss_pred             CCCChhHHHhCCCcccEEEEECCEEeCCHH---HHHHHHH
Confidence            358999999999999999999999999998   5555553

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=8.1e-10  Score=64.98  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHH
Q psy16960         27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEV   61 (69)
Q Consensus        27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev   61 (69)
                      +.++|||+++||++||+|++|||+++.++.++.++
T Consensus        33 V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~   67 (99)
T d1sota1          33 VSPDGPAANAGIQVNDLIISVDNKPAISALETMDQ   67 (99)
T ss_dssp             CCSSSTTTSSSCCTTCEECBSSSSBCCCSHHHHHH
T ss_pred             ecCCCCHHHcCCCcceEEEEECCEecccHHHHHHH
Confidence            35899999999999999999999999999843333

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.72  E-value=2e-09  Score=62.26  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHH
Q psy16960         28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI   62 (69)
Q Consensus        28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~   62 (69)
                      .++|||++|||++||+|++|||+++.+++++.++.
T Consensus        27 ~~~s~~~~aGl~~GDiI~~ing~~v~~~~~~~~~~   61 (87)
T d2i6va1          27 KDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLF   61 (87)
T ss_dssp             SCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHH
T ss_pred             CCCCHHHHCCCCCCCEEEEECCEEeecHHHHHHHH
Confidence            46899999999999999999999999888444433