Psyllid ID: psy17001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
AVRPVITSTPEPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVPDNTNWSES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEccccccccEEEEccccEEEEEEcEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEcccccccccEEEEEccccccccEEEcccccccccccccEEEEEEEcccccccEEEEEEEEEcEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHcccccccccEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEccccccccEEccccccEEEEccccccEcccEEEEEEEcccccccccccccccEEEEEEEcccccccccEEEEEEcccccccHEEcccccccccccccEEEEEEEcccccccEEEEEEEEEEEEEEEEEcccEEEEEEEccHHHHHHHcccccccEEEEccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
avrpvitstpeppptlppascsfhgtrrfkhcglfgdphlktfnndyqtcrvrgawplidnpylgvqvtneliregspatvttKKVTVIIkgrstpctnektyeaqadsplplsfinsgvnshsknadNVVLkvesdpsghhERAEIFIKYIETTIVVRRVGKYLAVSaklpeelvepsiqdpntlqlctlgcppserldivtsrghmtdrdhalakckdteELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQadvlrfdpsslnnrttlyltepvnvpdntnwses
Flexible Loop (DISEMBL)
avrpvitstpeppptlpPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELiregspatvttkkvtviikgrstpctnektyeaqadsplPLSFINSGVNSHSKNADNVVLKVesdpsghhERAEIFIKYIETTIVVRRVGKYLAVSAKLpeelvepsiqdpntlQLCTLGCPPSERLDIVTSRGHMTDRDHALakckdteelSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNnrttlyltepvnvpdntnwses
Low Complexity Region (SEG)
AVRPVItstpeppptlppASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPAtvttkkvtviikGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVPDNTNWSES
Disordered region (IsUnstruct)
********************CSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRS*************************************************RAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMT*RDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLT**************
Disordered Region (DISOPRED)
*********************SFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFIN************************HERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVE***QDPNTLQLCTLGCPP*******************************DIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYL***************
Disordered Region (DISEMBL)
AVRPVITSTPEPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVPDNTNWSES
Disordered Region (DISPRO)
**************TLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNS****ADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPS*******************AKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVN**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AVRPVITSTPEPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVPDNTNWSES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q6NW40	437	RGM domain family member	yes	N/A	0.854	0.576	0.396	6e-42
Q96B86	450	Repulsive guidance molecu	no	N/A	0.772	0.506	0.415	3e-41
Q9N0A6	458	Repulsive guidance molecu	N/A	N/A	0.820	0.528	0.403	3e-41
Q6PCX7	454	Repulsive guidance molecu	yes	N/A	0.769	0.5	0.409	9e-41
Q8JG54	432	Repulsive guidance molecu	yes	N/A	0.820	0.560	0.397	2e-40
Q7TQ33	436	RGM domain family member	no	N/A	0.854	0.577	0.375	9e-39
Q8N7M5	422	Hemojuvelin OS=Rattus nor	no	N/A	0.813	0.568	0.361	3e-33
Q6ZVN8	426	Hemojuvelin OS=Homo sapie	no	N/A	0.759	0.525	0.366	3e-33
Q7TQ32	420	Hemojuvelin OS=Mus muscul	no	N/A	0.759	0.533	0.355	1e-32

>sp|Q6NW40|RGMB_HUMAN RGM domain family member B OS=Homo sapiens GN=RGMB PE=2 SV=3

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 158/285 (55%), Gaps = 33/285 (11%)

Query: 7   TSTPEPPPTLPPASCSFH---GTRRFKH----------CGLFGDPHLKTFNNDYQTCRVR 53
           TS+  P  T  P  C++H   G R  +           CGLFGDPHL+TF +++QTC+V 
Sbjct: 127 TSSTNPEVTHDP--CNYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVE 184

Query: 54  GAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPL 113
           GAWPLIDN YL VQVTN  +  GS AT  T K+T+I K     CT++K Y+A  D  LP 
Sbjct: 185 GAWPLIDNNYLSVQVTNVPVVPGSSATA-TNKITIIFKAHH-ECTDQKVYQAVTDD-LPA 241

Query: 114 SFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPE 173
           +F++    +   ++D   L++    SGH+   E+  +YI TT+ VR+VG+YL ++ ++PE
Sbjct: 242 AFVDG--TTSGGDSDAKSLRIVERESGHY--VEMHARYIGTTVFVRQVGRYLTLAIRMPE 297

Query: 174 ELVEPSIQDPNTLQLCTLGCPPSERLD-----IVTSRGHMTDRDHALAKCKD-TEELSND 227
           +L   S ++   LQLC  GCP SER+D     +    GH   R   +      T E +N 
Sbjct: 298 DLAM-SYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANT 356

Query: 228 IINN---LTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDP 269
             +    + D Y   CVFD +T G + +FTAAAHSA  DV    P
Sbjct: 357 QCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALEDVEALHP 400

Member of the repulsive guidance molecule (RGM) family that contributes to the patterning of the developing nervous system (By similarity). Acts as a bone morphogenetic protein (BMP) coreceptor that potentiates BMP signaling (By similarity). Promotes neuronal adhesion (By similarity). May inhibit neurite outgrowth.
Homo sapiens (taxid: 9606)

>sp|Q96B86|RGMA_HUMAN Repulsive guidance molecule A OS=Homo sapiens GN=RGMA PE=1 SV=3

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 39/267 (14%)

Query: 22  SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
           SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct: 150 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 209

Query: 79  ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
           AT T+ K+T+I K     C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct: 210 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGAN-SLKITEKV 265

Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
           SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V      D   L LC  GCP ++
Sbjct: 266 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQ 323

Query: 198 RLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYYL 237
           ++D       + G    R                + A+AKCK  E+L       + D Y 
Sbjct: 324 QIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLYY 375

Query: 238 DWCVFDTMTAGISYDFTAAAHSAQADV 264
             CVFD +T G   +FT AA+ A  DV
Sbjct: 376 QACVFDLLTTG-DVNFTLAAYYALEDV 401

Member of the repulsive guidance molecule (RGM) family that performs several functions in the developing and adult nervous system. Regulates cephalic neural tube closure, inhibits neurite outgrowth and cortical neuron branching, and the formation of mature synapses. Binding to its receptor NEO1/neogenin induces activation of RHOA-ROCK1/Rho-kinase signaling pathway through UNC5B-ARHGEF12/LARG-PTK2/FAK1 cascade, leading to collapse of the neuronal growth cone and neurite outgrowth inhibition. Furthermore, RGMA binding to NEO1/neogenin leads to HRAS inactivation by influencing HRAS1-PTK2/FAK1-AKT1 pathway. It also functions as a bone morphogenetic protein (BMP) coreceptor that may signal through SMAD1, SMAD5, and SMAD8.

Homo sapiens (taxid: 9606)

>sp|Q9N0A6|RGMA_MACFA Repulsive guidance molecule A OS=Macaca fascicularis GN=RGMA PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 155/285 (54%), Gaps = 43/285 (15%)

Query: 22  SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
           SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct: 158 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 217

Query: 79  ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
           AT T+ K+T+I K     C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct: 218 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGAN-SLKITEKV 273

Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
           SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V      D   L LC  GCP ++
Sbjct: 274 SGQH--VEIRAKYIGTTIVVRQVGRYLTFAVRVPEEVVNAVEDWDSQGLYLCLRGCPLNQ 331

Query: 198 RLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYYL 237
           ++D       + G    R                + A+AKCK  E+L       + D Y 
Sbjct: 332 QIDFQAFHTNTEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLYY 383

Query: 238 DWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTE 282
             CVFD +T G   +FT AA+ A  DV        +N+  L+L E
Sbjct: 384 QACVFDLLTTG-DVNFTLAAYYALEDVKMLH----SNKDKLHLYE 423

Member of the repulsive guidance molecule (RGM) family that performs several functions in the developing and adult nervous system. Regulates cephalic neural tube closure, inhibits neurite outgrowth and cortical neuron branching, and the formation of mature synapses. Binding to its receptor NEO1/neogenin induces activation of RHOA-ROCK1/Rho-kinase signaling pathway through UNC5B-ARHGEF12/LARG-PTK2/FAK1 cascade, leading to collapse of the neuronal growth cone and neurite outgrowth inhibition. Furthermore, RGMA binding to NEO1/neogenin leads to HRAS inactivation by influencing HRAS1-PTK2/FAK1-AKT1 pathway. It also functions as a bone morphogenetic protein (BMP) coreceptor that may signal through SMAD1, SMAD5, and SMAD8.

Macaca fascicularis (taxid: 9541)

>sp|Q6PCX7|RGMA_MOUSE Repulsive guidance molecule A OS=Mus musculus GN=Rgma PE=1 SV=1

 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 145/264 (54%), Gaps = 37/264 (14%)

Query: 22  SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
           SFH       + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct: 151 SFHKHSAAPNYTHCGLFGDPHLRTFTDHFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 210

Query: 79  ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
           AT T+ K+T+I K     C ++K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct: 211 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPSAFADGSKNGGDKHGAN-SLKITEKV 266

Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
           SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V     +D   L LC  GCP ++
Sbjct: 267 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQ 324

Query: 198 RLDIVTSRGHMTD------------------RDHALAKCKDTEELSNDIINNLTDYYLDW 239
           ++D    R +                      + A+AKCK  E+L       + D Y   
Sbjct: 325 QIDFQAFRANAESPRRPAAASPSPVVPETFPYETAVAKCK--EKLP------VEDLYYQA 376

Query: 240 CVFDTMTAGISYDFTAAAHSAQAD 263
           CVFD +T G   +FT AA+ A  D
Sbjct: 377 CVFDLLTTG-DVNFTLAAYYALED 399

Member of the repulsive guidance molecule (RGM) family that performs several functions in the developing and adult nervous system. Regulates cephalic neural tube closure, inhibits neurite outgrowth and cortical neuron branching, and the formation of mature synapses. Binding to its receptor NEO1/neogenin induces activation of RHOA-ROCK1/Rho-kinase signaling pathway through UNC5B-ARHGEF12/LARG-PTK2/FAK1 cascade, leading to collapse of the neuronal growth cone and neurite outgrowth inhibition. Furthermore, RGMA binding to NEO1/neogenin leads to HRAS inactivation by influencing HRAS1-PTK2/FAK1-AKT1 pathway. It also functions as a bone morphogenetic protein (BMP) coreceptor that may signal through SMAD1, SMAD5, and SMAD8.

Mus musculus (taxid: 10090)

>sp|Q8JG54|RGMA_CHICK Repulsive guidance molecule A OS=Gallus gallus GN=RGMA PE=1 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 152/284 (53%), Gaps = 42/284 (14%)

Query: 22  SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
           SFH       + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct: 131 SFHKHSAAPNYTHCGLFGDPHLRTFTDTFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSS 190

Query: 79  ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
           AT T+ K+T+I K     C  +K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct: 191 ATATS-KLTIIFKSFQE-CVEQKVYQAEMDE-LPAAFADGSKNGGDKHGAN-SLKITEKV 246

Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
           SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V     +D   L LC  GCP ++
Sbjct: 247 SGQH--IEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQ 304

Query: 198 RLDIVTSR------GHMTDR-------------DHALAKCKDTEELSNDIINNLTDYYLD 238
           ++D  T R      G    +             + A AKC+  E+L       + D Y  
Sbjct: 305 QIDFQTFRLAQAAEGRARRKGPSLPAPPEAFTYESATAKCR--EKLP------VEDLYFQ 356

Query: 239 WCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTE 282
            CVFD +T G   +F  AA+ A  DV        +N+  L+L E
Sbjct: 357 SCVFDLLTTG-DVNFMLAAYYAFEDVKMLH----SNKDKLHLYE 395

Acts as an axon-specific repulsive guidance molecule in the retinotectal system. Repulsive for a subset of axons of the temporal half of the retina. Provides thus positional information for the temporal axons invading the optic tectum in the stratum opticum.

Gallus gallus (taxid: 9031)

>sp|Q7TQ33|RGMB_MOUSE RGM domain family member B OS=Mus musculus GN=Rgmb PE=1 SV=1

 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 33/285 (11%)

Query: 7   TSTPEPPPTLPPASCSFHGTRR-----------FKHCGLFGDPHLKTFNNDYQTCRVRGA 55
           TS+  P  T  P +   HG  R           +  CGLFGDPHL+TF + +QTC+V GA
Sbjct: 130 TSSTNPEVTHDPCNYHSHGGVREHGGGDQRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGA 189

Query: 56  WPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSF 115
           WPLIDN YL VQVTN  +  GS AT  T KVT+I K +   CT++K Y+A  D  LP +F
Sbjct: 190 WPLIDNNYLSVQVTNVPVVPGSSATA-TNKVTIIFKAQH-ECTDQKVYQAVTDD-LPAAF 246

Query: 116 INSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEEL 175
           ++    +   + D   L +    SG +   E+  +YI TT+ VR++G+YL ++ ++PE+L
Sbjct: 247 VDG--TTSGGDGDVKSLHIVEKESGRY--VEMHARYIGTTVFVRQLGRYLTLAIRMPEDL 302

Query: 176 VEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTD-RDHALAKCKDTEELSNDIINN--- 231
              S ++   LQLC  GCP SE +D    +G ++    H+L      +      +     
Sbjct: 303 AM-SYEESQDLQLCVNGCPMSECID--DGQGQVSAILGHSLPHTTSVQAWPGYTLETAST 359

Query: 232 -------LTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDP 269
                  + D Y   CVFD +T G + +FTAAAHSA  DV    P
Sbjct: 360 QCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALEDVEALHP 403

Member of the repulsive guidance molecule (RGM) family that contributes to the patterning of the developing nervous system. Acts as a bone morphogenetic protein (BMP) coreceptor that potentiates BMP signaling. Promotes neuronal adhesion. May inhibit neurite outgrowth.

Mus musculus (taxid: 10090)

>sp|Q8N7M5|RGMC_RAT Hemojuvelin OS=Rattus norvegicus GN=Hfe2 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 137/263 (52%), Gaps = 23/263 (8%)

Query: 13  PPTLPPASCSF-------HG-TRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYL 64
           P  L P  C +       HG T  F HC  FGDPH+++F+N + TCRV+GAWPL+DN +L
Sbjct: 136 PAPLTPDPCDYEARFSRLHGRTPGFLHCASFGDPHVRSFHNHFHTCRVQGAWPLLDNDFL 195

Query: 65  GVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHS 124
            VQ T+  +  G+ AT T +K+T+I K     C ++K Y+A+ D+ LP +F +  VN   
Sbjct: 196 FVQATSSPVASGANAT-TIRKITIIFKNMQE-CIDQKVYQAEVDN-LPAAFEDGSVNGGD 252

Query: 125 KNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPN 184
           +   +  L +++   G H   EI   YI TTI+VR+    L+ S ++ E++   +     
Sbjct: 253 RPGGS-SLSIQTANLGSH--VEIRAAYIGTTIIVRQTAGQLSFSIRVAEDVAR-AFSAEQ 308

Query: 185 TLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDT 244
            LQLC  GCPPS+RL         ++R+   A   DT          + D Y   CVFD 
Sbjct: 309 DLQLCVGGCPPSQRLS-------RSERNRRGAIAIDTARRLCKEGLPVEDAYFQSCVFDV 361

Query: 245 MTAGISYDFTAAAHSAQADVLRF 267
             +G   +FT AA SA  D   F
Sbjct: 362 SVSG-DPNFTVAAQSALDDARVF 383

Member of the repulsive guidance molecule (RGM) family. Involved in iron metabolism (By similarity). Acts as a bone morphogenetic protein (BMP) coreceptor (By similarity). Enhancement of BMP signaling regulates hepcidin (HAMP) expression and iron metabolism (By similarity). May cooperate with hepcidin to restrict iron absorption in the gut (By similarity). Could represent the cellular receptor for hepcidin.

Rattus norvegicus (taxid: 10116)

>sp|Q6ZVN8|RGMC_HUMAN Hemojuvelin OS=Homo sapiens GN=HFE2 PE=1 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 133/243 (54%), Gaps = 19/243 (7%)

Query: 29  FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
           F HC  FGDPH+++F++ + TCRV+GAWPL+DN +L VQ T+  +  G+ AT  T+K+T+
Sbjct: 164 FLHCASFGDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANAT-ATRKLTI 222

Query: 89  IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
           I K     C ++K Y+A+ D+ LP++F +  +N   +   + +    ++P  H    EI 
Sbjct: 223 IFKNMQE-CIDQKVYQAEVDN-LPVAFEDGSINGGDRPGGSSLSIQTANPGNH---VEIQ 277

Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIV--TSRG 206
             YI TTI++R+    L+ S K+ E+ V  +      LQLC  GCPPS+RL       RG
Sbjct: 278 AAYIGTTIIIRQTAGQLSFSIKVAED-VAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRG 336

Query: 207 HMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLR 266
            +T  D A   CK+   +         D Y   CVFD + +G   +FT AA +A  D   
Sbjct: 337 AITI-DTARRLCKEGLPVE--------DAYFHSCVFDVLISG-DPNFTVAAQAALEDARA 386

Query: 267 FDP 269
           F P
Sbjct: 387 FLP 389

Member of the repulsive guidance molecule (RGM) family. Involved in iron metabolism. Acts as a bone morphogenetic protein (BMP) coreceptor (By similarity). Enhancement of BMP signaling regulates hepcidin (HAMP) expression and iron metabolism (By similarity). May cooperate with hepcidin to restrict iron absorption in the gut. Could represent the cellular receptor for hepcidin.

Homo sapiens (taxid: 9606)

>sp|Q7TQ32|RGMC_MOUSE Hemojuvelin OS=Mus musculus GN=Hfe2 PE=1 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 15/239 (6%)

Query: 29  FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
           F HC  FGDPH+++F+N + TCRV+GAWPL+DN +L VQ T+  +  G+ AT T +K+T+
Sbjct: 157 FLHCASFGDPHVRSFHNQFHTCRVQGAWPLLDNDFLFVQATSSPVSSGANAT-TIRKITI 215

Query: 89  IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
           I K     C ++K Y+A+ D+ LP +F +  +N   +   +  L +++   G H   EI 
Sbjct: 216 IFKNMQE-CIDQKVYQAEVDN-LPAAFEDGSINGGDRPGGS-SLSIQTANLGSH--VEIR 270

Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHM 208
             YI TTI++R+    L+ S ++ E++   +      LQLC  GCPPS+RL         
Sbjct: 271 AAYIGTTIIIRQTAGQLSFSIRVAEDVAR-AFSAEQDLQLCVGGCPPSQRLS-------R 322

Query: 209 TDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRF 267
           ++R+   A   DT          + D Y   CVFD   +G   +FT AA +A  D   F
Sbjct: 323 SERNRRGAIAIDTARRLCKEGLPVEDAYFQSCVFDVSVSG-DPNFTVAAQTALDDARIF 380

Member of the repulsive guidance molecule (RGM) family. Involved in iron metabolism (By similarity). Acts as a bone morphogenetic protein (BMP) coreceptor (By similarity). Enhancement of BMP signaling regulates hepcidin (HAMP) expression and iron metabolism (By similarity). May cooperate with hepcidin to restrict iron absorption in the gut (By similarity). Could represent the cellular receptor for hepcidin.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
242015139	407	conserved hypothetical protein [Pediculu	0.888	0.643	0.583	7e-82
193608363	387	PREDICTED: RGM domain family member B-li	0.820	0.625	0.441	2e-49
260814672	478	hypothetical protein BRAFLDRAFT_82627 [B	0.827	0.510	0.424	3e-48
291240567	443	PREDICTED: hypothetical protein [Saccogl	0.844	0.562	0.424	2e-47
390355913	490	PREDICTED: repulsive guidance molecule A	0.847	0.510	0.403	2e-46
390355915	489	PREDICTED: repulsive guidance molecule A	0.847	0.511	0.403	2e-46
390355911	507	PREDICTED: repulsive guidance molecule A	0.847	0.493	0.403	2e-46
61403380	431	Rgma protein [Danio rerio]	0.749	0.512	0.421	1e-40
113682006	449	repulsive guidance molecule A [Danio rer	0.749	0.492	0.421	1e-40
194206328	500	PREDICTED: repulsive guidance molecule A	0.837	0.494	0.406	2e-40

>gi|242015139|ref|XP_002428231.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512792|gb|EEB15493.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  310 bits (793), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 158/271 (58%), Positives = 199/271 (73%), Gaps = 9/271 (3%)

Query: 12  PPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNE 71
           P   +   SC+F G  +F++CGLFGDPHLKTF++ YQTC+++GAWPLIDNPYL V VTNE
Sbjct: 105 PVSVVTQRSCTFLGKNKFRYCGLFGDPHLKTFHSKYQTCKLKGAWPLIDNPYLAVSVTNE 164

Query: 72  LIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVV 131
            + E SPATVTT KVTVIIKGR T CT EKTYEAQ+D PL  SF++ G ++   N  +V+
Sbjct: 165 PVIENSPATVTT-KVTVIIKGRGTFCTQEKTYEAQSDQPLQASFVD-GTHTSGPN-QSVM 221

Query: 132 LKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTL 191
           LK+E +   +H+  EI++KYIETT+V+R+VGKYL+ +A+LPEE+   ++ D   LQLCT 
Sbjct: 222 LKLE-EIDKNHQVVEIYLKYIETTLVIRQVGKYLSFAARLPEEV---ALMDGEDLQLCTS 277

Query: 192 GCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAG--I 249
           GCP  E+L++    G     + AL  C+D+  LSN+I N LTD+YLDWCVFD MT G   
Sbjct: 278 GCPNLEQLNLAADHGEAMSWEEALNVCQDSNGLSNEINNKLTDHYLDWCVFDVMTTGEVA 337

Query: 250 SYDFTAAAHSAQADVLRFDPSSLNNRTTLYL 280
           S DFTAAAHSAQADVLRFDP SL NRTT  L
Sbjct: 338 SSDFTAAAHSAQADVLRFDPESLKNRTTTKL 368

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193608363|ref|XP_001950875.1| PREDICTED: RGM domain family member B-like [Acyrthosiphon pisum]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 158/256 (61%), Gaps = 14/256 (5%)

Query: 23  FHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVT 82
           F   +  + CGLFGDPHL+TF+  YQTCR+ GAW +IDNP+  + VTN+ +   + AT  
Sbjct: 110 FDDKKEHRFCGLFGDPHLRTFDGKYQTCRIHGAWQVIDNPFFSIMVTNDAVLNSTTATAP 169

Query: 83  TKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHH 142
           T K+TV++K     CT+ K +EAQ DS LP  F++S  +S   ++  V L   S+   + 
Sbjct: 170 T-KLTVMLKAHKPECTSYKLFEAQGDSQLPDKFVDSTTSSGPASSPTVSLSWRSN-DNNS 227

Query: 143 ERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIV 202
           E   I + YI T I V RVGKYL++SAKLP++L +   QD N   LC+ GCP SE++DI 
Sbjct: 228 ETVIIRLSYISTIITVTRVGKYLSISAKLPDQLAQVFDQDKNV--LCSSGCPTSEQIDI- 284

Query: 203 TSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYD--FTAAAHSA 260
             +  +++ D  L  C ++   +    + LTD YLDWCVFD MT   S+D  F  A+H+A
Sbjct: 285 -KQVTISELDRGLTLCHNSIGPTG---HKLTDQYLDWCVFDMMT---SHDEQFIKASHAA 337

Query: 261 QADVLRFDPSSLNNRT 276
            +DVL F+P SL NRT
Sbjct: 338 YSDVLFFEPRSLFNRT 353

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260814672|ref|XP_002602038.1| hypothetical protein BRAFLDRAFT_82627 [Branchiostoma floridae] gi|229287343|gb|EEN58050.1| hypothetical protein BRAFLDRAFT_82627 [Branchiostoma floridae]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 162/285 (56%), Gaps = 41/285 (14%)

Query: 11  EPPPTLP-----PASCSFHGTRR--FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPY 63
           EP PT P     P  C++ G     ++HCGLFGDPHL+TF +D+QTC+V  AWPLIDN Y
Sbjct: 155 EPVPTRPTQEQLPQMCAYRGGSNTVYRHCGLFGDPHLRTFYDDFQTCKVDRAWPLIDNAY 214

Query: 64  LGVQVTNELI----REGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSG 119
           L VQVTN  +      G  AT TT K+TVI+KG    C  EK Y+AQ ++ LP +F +  
Sbjct: 215 LAVQVTNVPVAVAASHGFTATATT-KLTVIVKGEVAECAREKVYQAQQNN-LPDAFADGT 272

Query: 120 VNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPS 179
            +       ++VL V   P  H    EI I+YI+TTIV+R++G YL  + ++PE+++   
Sbjct: 273 RSGGPNGIRSLVLDVRV-PGRH---VEIHIRYIDTTIVLRQIGNYLTFAIRMPEDVINTG 328

Query: 180 IQDPNTLQLCTLGCPPSERLDIVTSRGH--------------MTDRDHALAKCKDTEELS 225
             D + LQLC  GCP SER+D V    H                 +D A+AKC+ +    
Sbjct: 329 NVDEDGLQLCVKGCPLSERIDYVEFLKHPPQSSNTVLHRSEVAMPKDLAIAKCRQS---- 384

Query: 226 NDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPS 270
                N+TD+YLD CVFD MT G + +FT AA SA  DV R  P+
Sbjct: 385 -----NVTDFYLDSCVFDLMTTGDA-NFTLAAKSALEDVNRLHPN 423

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291240567|ref|XP_002740182.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/283 (42%), Positives = 166/283 (58%), Gaps = 34/283 (12%)

Query: 8   STPEPPPTLPPASCS-FHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGV 66
           S P P P+     CS  HG R FKHCGLFGDPHL+TF++ ++TC+V GAWPLIDN +L V
Sbjct: 137 SRPTPKPSEVETRCSSHHGPRTFKHCGLFGDPHLRTFDDVFETCKVAGAWPLIDNRHLAV 196

Query: 67  QVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKN 126
           QVTN  + +GS AT  T ++TVIIKG S  C+ +K Y+AQ  + LP SF++    ++S  
Sbjct: 197 QVTNVPLVDGSSATA-TDQLTVIIKGHS-ECSEQKLYQAQTGN-LPASFVD---GTYSSG 250

Query: 127 ADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTL 186
               ++ VE  P  H    EI  K+I TTIVVR+VG YL  + ++P +LV+  ++D   L
Sbjct: 251 PGRSLVIVEILPGKH---VEIHAKFIATTIVVRQVGSYLTFAIRMPGDLVDTGVKD--GL 305

Query: 187 QLCTLGCPPSERLD----------IVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYY 236
           +LC  GCP  E++D          I  + G +  ++ A+AKC +          N+TD+Y
Sbjct: 306 ELCVKGCPHQEKIDFNELLSSPNQIKDTSGLVMSKETAIAKCLEA---------NVTDFY 356

Query: 237 LDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSS--LNNRTT 277
            D CVFD +T G   +FT AA  A  D     P++    NRTT
Sbjct: 357 FDSCVFDLITTG-DVNFTMAAKKALKDYQELLPNANVHRNRTT 398

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|390355913|ref|XP_003728654.1| PREDICTED: repulsive guidance molecule A-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 160/280 (57%), Gaps = 30/280 (10%)

Query: 11  EPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTN 70
           + P T     C + G+R F+HCGLFGDPHL+TF++ +QTC+V GAWPLI N YL  QVTN
Sbjct: 180 DAPETGGSQRCQYTGSRSFRHCGLFGDPHLRTFDDLFQTCKVAGAWPLIYNDYLTAQVTN 239

Query: 71  ELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNV 130
             +  GS AT T K   +I   R   C   K Y+A A + LP +F +  + S  +     
Sbjct: 240 VPLVHGSGATATNKLTVIIKPFRDGECAQRKLYQATAGN-LPTTFDDGTITSGREEG--- 295

Query: 131 VLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCT 190
           V+ +E  P  H    EI I+YI T IV+R+VG+Y+  + ++PEEL++   Q    +QLC 
Sbjct: 296 VVIIEVIPGEH---VEIHIRYIATLIVIRQVGRYITFAVRMPEELIQ--YQGAEDMQLCV 350

Query: 191 LGCPPSERLDIVT--SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVF 242
            GCP SE++D  T  S+    DR++      A+AKC+  +         + D YLD CVF
Sbjct: 351 KGCPVSEQIDYATFLSQTTRADRNYKELRVDAIAKCRKAK---------IYDEYLDSCVF 401

Query: 243 DTMTAGISYDFTAAAHSAQADVLRFDPSS---LNNRTTLY 279
           D +T G + +FT AA SA  DV R  P++     NRT+++
Sbjct: 402 DLLTTGDA-NFTQAAKSALTDVNRLHPNASFLFKNRTSVF 440

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390355915|ref|XP_781467.3| PREDICTED: repulsive guidance molecule A-like isoform 3 [Strongylocentrotus purpuratus]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 160/280 (57%), Gaps = 30/280 (10%)

Query: 11  EPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTN 70
           + P T     C + G+R F+HCGLFGDPHL+TF++ +QTC+V GAWPLI N YL  QVTN
Sbjct: 179 DAPETGGSQRCQYTGSRSFRHCGLFGDPHLRTFDDLFQTCKVAGAWPLIYNDYLTAQVTN 238

Query: 71  ELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNV 130
             +  GS AT T K   +I   R   C   K Y+A A + LP +F +  + S  +     
Sbjct: 239 VPLVHGSGATATNKLTVIIKPFRDGECAQRKLYQATAGN-LPTTFDDGTITSGREEG--- 294

Query: 131 VLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCT 190
           V+ +E  P  H    EI I+YI T IV+R+VG+Y+  + ++PEEL++   Q    +QLC 
Sbjct: 295 VVIIEVIPGEH---VEIHIRYIATLIVIRQVGRYITFAVRMPEELIQ--YQGAEDMQLCV 349

Query: 191 LGCPPSERLDIVT--SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVF 242
            GCP SE++D  T  S+    DR++      A+AKC+  +         + D YLD CVF
Sbjct: 350 KGCPVSEQIDYATFLSQTTRADRNYKELRVDAIAKCRKAK---------IYDEYLDSCVF 400

Query: 243 DTMTAGISYDFTAAAHSAQADVLRFDPSS---LNNRTTLY 279
           D +T G + +FT AA SA  DV R  P++     NRT+++
Sbjct: 401 DLLTTGDA-NFTQAAKSALTDVNRLHPNASFLFKNRTSVF 439

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390355911|ref|XP_003728653.1| PREDICTED: repulsive guidance molecule A-like isoform 1 [Strongylocentrotus purpuratus]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 160/280 (57%), Gaps = 30/280 (10%)

Query: 11  EPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTN 70
           + P T     C + G+R F+HCGLFGDPHL+TF++ +QTC+V GAWPLI N YL  QVTN
Sbjct: 197 DAPETGGSQRCQYTGSRSFRHCGLFGDPHLRTFDDLFQTCKVAGAWPLIYNDYLTAQVTN 256

Query: 71  ELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNV 130
             +  GS AT T K   +I   R   C   K Y+A A + LP +F +  + S  +     
Sbjct: 257 VPLVHGSGATATNKLTVIIKPFRDGECAQRKLYQATAGN-LPTTFDDGTITSGREEG--- 312

Query: 131 VLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCT 190
           V+ +E  P  H    EI I+YI T IV+R+VG+Y+  + ++PEEL++   Q    +QLC 
Sbjct: 313 VVIIEVIPGEH---VEIHIRYIATLIVIRQVGRYITFAVRMPEELIQ--YQGAEDMQLCV 367

Query: 191 LGCPPSERLDIVT--SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVF 242
            GCP SE++D  T  S+    DR++      A+AKC+  +         + D YLD CVF
Sbjct: 368 KGCPVSEQIDYATFLSQTTRADRNYKELRVDAIAKCRKAK---------IYDEYLDSCVF 418

Query: 243 DTMTAGISYDFTAAAHSAQADVLRFDPSS---LNNRTTLY 279
           D +T G + +FT AA SA  DV R  P++     NRT+++
Sbjct: 419 DLLTTGDA-NFTQAAKSALTDVNRLHPNASFLFKNRTSVF 457

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|61403380|gb|AAH91800.1| Rgma protein [Danio rerio]

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/254 (42%), Positives = 139/254 (54%), Gaps = 33/254 (12%)

Query: 29  FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
           + HCG FGDPHL+TFN+D+QTC+V GAWPLI N YL VQVTN  +  GS AT T+K    
Sbjct: 143 YTHCGFFGDPHLRTFNDDFQTCKVEGAWPLIHNKYLSVQVTNTPVVVGSSATATSK--LT 200

Query: 89  IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
           II      C ++KTY A+ +  LP +FI+   N    +  N +  VE  P  H    EI 
Sbjct: 201 IIFNSFQECVDQKTYRAETED-LPAAFIDGSKNGGEGHGANTLRVVEKVPGQH---VEIQ 256

Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSERLDIVT---- 203
            +YI TTIVVR+VG YL  + ++PEE+V     QD   L LC  GCP ++R+D  T    
Sbjct: 257 ARYIGTTIVVRKVGHYLTFAVRMPEEVVNSVEDQDNQDLYLCLHGCPANQRIDFRTFKAR 316

Query: 204 -------SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGIS 250
                   RG   +  H      A+AKCK  E L       + D Y   CVFD +++G  
Sbjct: 317 AAESHGVGRGRPGNPSHGFTYQSAMAKCK--ERLP------VEDLYFQSCVFDLLSSG-D 367

Query: 251 YDFTAAAHSAQADV 264
            +FT AA+ A  DV
Sbjct: 368 INFTLAAYYAFEDV 381

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|113682006|ref|NP_001038476.1| repulsive guidance molecule A [Danio rerio]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/254 (42%), Positives = 139/254 (54%), Gaps = 33/254 (12%)

Query: 29  FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
           + HCG FGDPHL+TFN+D+QTC+V GAWPLI N YL VQVTN  +  GS AT T+K    
Sbjct: 161 YTHCGFFGDPHLRTFNDDFQTCKVEGAWPLIHNKYLSVQVTNTPVVVGSSATATSK--LT 218

Query: 89  IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
           II      C ++KTY A+ +  LP +FI+   N    +  N +  VE  P  H    EI 
Sbjct: 219 IIFNSFQECVDQKTYRAETED-LPAAFIDGSKNGGEGHGANTLRVVEKVPGQH---VEIQ 274

Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSERLDIVT---- 203
            +YI TTIVVR+VG YL  + ++PEE+V     QD   L LC  GCP ++R+D  T    
Sbjct: 275 ARYIGTTIVVRKVGHYLTFAVRMPEEVVNSVEDQDNQDLYLCLHGCPANQRIDFRTFKAR 334

Query: 204 -------SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGIS 250
                   RG   +  H      A+AKCK  E L       + D Y   CVFD +++G  
Sbjct: 335 AAESHGVGRGRPGNPSHGFTYQSAMAKCK--ERLP------VEDLYFQSCVFDLLSSG-D 385

Query: 251 YDFTAAAHSAQADV 264
            +FT AA+ A  DV
Sbjct: 386 INFTLAAYYAFEDV 399

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194206328|ref|XP_001917653.1| PREDICTED: repulsive guidance molecule A-like [Equus caballus]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 156/290 (53%), Gaps = 43/290 (14%)

Query: 22  SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
           SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct: 195 SFHKHAATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 254

Query: 79  ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
           AT T+ K+T+I K     C ++K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct: 255 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPAAFADGSKNGGDKHGAN-SLKITEKV 310

Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
           SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V     +D   L LC  GCP ++
Sbjct: 311 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQ 368

Query: 198 RLDIVTSR----GHMTDR----------------DHALAKCKDTEELSNDIINNLTDYYL 237
           ++D    R    G  T R                + A AKCK  E+L       + D Y 
Sbjct: 369 QIDFQAFRANAEGPGTRRQAAASPAPAAPDTFPYETAAAKCK--EKLP------VEDLYY 420

Query: 238 DWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVP 287
             CVFD +T G   +FT AA+ A  DV        +N+  L+L E    P
Sbjct: 421 QACVFDLLTTG-DVNFTLAAYYALEDVKMLH----SNKDRLHLYERTQEP 465

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
UNIPROTKB|J3KNF6	478	RGMB "RGM domain family member	0.776	0.479	0.404	2.9e-39
UNIPROTKB|Q6NW40	437	RGMB "RGM domain family member	0.776	0.524	0.404	2.9e-39
UNIPROTKB|F1SA76	435	RGMA "Uncharacterized protein"	0.861	0.583	0.378	9.9e-39
ZFIN|ZDB-GENE-040527-1	449	rgma "RGM domain family, membe	0.749	0.492	0.405	2.6e-38
UNIPROTKB|F5GZU6	434	RGMA "Repulsive guidance molec	0.769	0.523	0.391	1.5e-37
UNIPROTKB|F5H7G2	341	RGMA "Repulsive guidance molec	0.769	0.665	0.391	1.5e-37
UNIPROTKB|G3V518	458	RGMA "Repulsive guidance molec	0.769	0.495	0.391	1.5e-37
UNIPROTKB|Q96B86	450	RGMA "Repulsive guidance molec	0.769	0.504	0.391	1.5e-37
UNIPROTKB|F1NHA2	407	RGMA "Repulsive guidance molec	0.884	0.641	0.371	2.4e-37
UNIPROTKB|Q8JG54	432	RGMA "Repulsive guidance molec	0.884	0.604	0.371	2.4e-37

UNIPROTKB|J3KNF6 RGMB "RGM domain family member B" [Homo sapiens (taxid:9606)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 100/247 (40%), Positives = 138/247 (55%)

Query:    32 CGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPAXXXXXXXXXXXX 91
             CGLFGDPHL+TF +++QTC+V GAWPLIDN YL VQVTN  +  GS A            
Sbjct:   204 CGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKA 263

Query:    92 GRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKY 151
                  CT++K Y+A  D  LP +F++ G  S   ++D   L++    SGH+   E+  +Y
Sbjct:   264 HHE--CTDQKVYQAVTDD-LPAAFVD-GTTSGG-DSDAKSLRIVERESGHY--VEMHARY 316

Query:   152 IETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLD-----IVTSRG 206
             I TT+ VR+VG+YL ++ ++PE+L   S ++   LQLC  GCP SER+D     +    G
Sbjct:   317 IGTTVFVRQVGRYLTLAIRMPEDLAM-SYEESQDLQLCVNGCPLSERIDDGQGQVSAILG 375

Query:   207 HMTDRDHALAKCKD-TEELSNDIINN---LTDYYLDWCVFDTMTAGISYDFTAAAHSAQA 262
             H   R   +      T E +N   +    + D Y   CVFD +T G + +FTAAAHSA  
Sbjct:   376 HSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALE 434

Query:   263 DVLRFDP 269
             DV    P
Sbjct:   435 DVEALHP 441

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046658 "anchored to plasma membrane" evidence=IEA

UNIPROTKB|Q6NW40 RGMB "RGM domain family member B" [Homo sapiens (taxid:9606)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 100/247 (40%), Positives = 138/247 (55%)

Query:    32 CGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPAXXXXXXXXXXXX 91
             CGLFGDPHL+TF +++QTC+V GAWPLIDN YL VQVTN  +  GS A            
Sbjct:   163 CGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKA 222

Query:    92 GRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKY 151
                  CT++K Y+A  D  LP +F++ G  S   ++D   L++    SGH+   E+  +Y
Sbjct:   223 HHE--CTDQKVYQAVTDD-LPAAFVD-GTTSGG-DSDAKSLRIVERESGHY--VEMHARY 275

Query:   152 IETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLD-----IVTSRG 206
             I TT+ VR+VG+YL ++ ++PE+L   S ++   LQLC  GCP SER+D     +    G
Sbjct:   276 IGTTVFVRQVGRYLTLAIRMPEDLAM-SYEESQDLQLCVNGCPLSERIDDGQGQVSAILG 334

Query:   207 HMTDRDHALAKCKD-TEELSNDIINN---LTDYYLDWCVFDTMTAGISYDFTAAAHSAQA 262
             H   R   +      T E +N   +    + D Y   CVFD +T G + +FTAAAHSA  
Sbjct:   335 HSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALE 393

Query:   263 DVLRFDP 269
             DV    P
Sbjct:   394 DVEALHP 400

GO:0045121 "membrane raft" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0030509 "BMP signaling pathway" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007155 "cell adhesion" evidence=ISS

GO:0046658 "anchored to plasma membrane" evidence=ISS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|F1SA76 RGMA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 107/283 (37%), Positives = 147/283 (51%)

Query:    22 SFHGTR---RFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH       + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   132 SFHNRAAAPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 191

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C ++K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct:   192 ATATSKLTIIFKNFQE--CVDQKVYQAEMDE-LPAAFADGSKNGGDKHGANS-LKITEKV 247

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   248 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDRDSQGLYLCLRGCPLN 304

Query:   197 ERLDIVTSRGHM----TDRDHALA---KCKDTEELSNDIIN-----NLTDYYLDWCVFDT 244
             +++D    RG      T R  A +      DT      +        + D Y   CVFD 
Sbjct:   305 QQIDFQAFRGSAEGPGTRRPAAASPAPSAPDTFPYETAVAKCKEKLPVEDLYYQACVFDL 364

Query:   245 MTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNVP 287
             +T G   +FT AA+ A  DV        +N+  L+L E    P
Sbjct:   365 LTTG-DVNFTLAAYYALEDVKMLH----SNKDKLHLYERTREP 402

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

ZFIN|ZDB-GENE-040527-1 rgma "RGM domain family, member A" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 103/254 (40%), Positives = 135/254 (53%)

Query:    29 FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPAXXXXXXXXX 88
             + HCG FGDPHL+TFN+D+QTC+V GAWPLI N YL VQVTN  +  GS A         
Sbjct:   161 YTHCGFFGDPHLRTFNDDFQTCKVEGAWPLIHNKYLSVQVTNTPVVVGSSATATSKLTII 220

Query:    89 XXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
                 +   C ++KTY A+ +  LP +FI+   N    +  N +  VE  P G H   EI 
Sbjct:   221 FNSFQE--CVDQKTYRAETED-LPAAFIDGSKNGGEGHGANTLRVVEKVP-GQH--VEIQ 274

Query:   149 IKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSERLDIVT---- 203
              +YI TTIVVR+VG YL  + ++PEE+V     QD   L LC  GCP ++R+D  T    
Sbjct:   275 ARYIGTTIVVRKVGHYLTFAVRMPEEVVNSVEDQDNQDLYLCLHGCPANQRIDFRTFKAR 334

Query:   204 -------SRGHMTDRDH------ALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGIS 250
                     RG   +  H      A+AKCK  E L       + D Y   CVFD +++G  
Sbjct:   335 AAESHGVGRGRPGNPSHGFTYQSAMAKCK--ERLP------VEDLYFQSCVFDLLSSG-D 385

Query:   251 YDFTAAAHSAQADV 264
              +FT AA+ A  DV
Sbjct:   386 INFTLAAYYAFEDV 399

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0046658 "anchored to plasma membrane" evidence=ISS

UNIPROTKB|F5GZU6 RGMA "Repulsive guidance molecule A" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 105/268 (39%), Positives = 145/268 (54%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   134 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 193

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct:   194 ATATSKLTIIFKNFQE--CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGANS-LKITEKV 249

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   250 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDWDSQGLYLCLRGCPLN 306

Query:   197 ERLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYY 236
             +++D       + G    R                + A+AKCK  E+L       + D Y
Sbjct:   307 QQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLY 358

Query:   237 LDWCVFDTMTAGISYDFTAAAHSAQADV 264
                CVFD +T G   +FT AA+ A  DV
Sbjct:   359 YQACVFDLLTTG-DVNFTLAAYYALEDV 385

GO:0001843 "neural tube closure" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

UNIPROTKB|F5H7G2 RGMA "Repulsive guidance molecule A" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 105/268 (39%), Positives = 145/268 (54%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:    41 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 100

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct:   101 ATATSKLTIIFKNFQE--CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGANS-LKITEKV 156

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   157 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDWDSQGLYLCLRGCPLN 213

Query:   197 ERLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYY 236
             +++D       + G    R                + A+AKCK  E+L       + D Y
Sbjct:   214 QQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLY 265

Query:   237 LDWCVFDTMTAGISYDFTAAAHSAQADV 264
                CVFD +T G   +FT AA+ A  DV
Sbjct:   266 YQACVFDLLTTG-DVNFTLAAYYALEDV 292

GO:0001843 "neural tube closure" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

UNIPROTKB|G3V518 RGMA "Repulsive guidance molecule A" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 105/268 (39%), Positives = 145/268 (54%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   158 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 217

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct:   218 ATATSKLTIIFKNFQE--CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGANS-LKITEKV 273

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   274 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDWDSQGLYLCLRGCPLN 330

Query:   197 ERLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYY 236
             +++D       + G    R                + A+AKCK  E+L       + D Y
Sbjct:   331 QQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLY 382

Query:   237 LDWCVFDTMTAGISYDFTAAAHSAQADV 264
                CVFD +T G   +FT AA+ A  DV
Sbjct:   383 YQACVFDLLTTG-DVNFTLAAYYALEDV 409

GO:0001843 "neural tube closure" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

UNIPROTKB|Q96B86 RGMA "Repulsive guidance molecule A" [Homo sapiens (taxid:9606)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 105/268 (39%), Positives = 145/268 (54%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH    T  + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   150 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 209

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C ++K Y+A+ D  LP +F++   N   K+  N  LK+    
Sbjct:   210 ATATSKLTIIFKNFQE--CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGANS-LKITEKV 265

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   266 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDWDSQGLYLCLRGCPLN 322

Query:   197 ERLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYY 236
             +++D       + G    R                + A+AKCK  E+L       + D Y
Sbjct:   323 QQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLY 374

Query:   237 LDWCVFDTMTAGISYDFTAAAHSAQADV 264
                CVFD +T G   +FT AA+ A  DV
Sbjct:   375 YQACVFDLLTTG-DVNFTLAAYYALEDV 401

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1NHA2 RGMA "Repulsive guidance molecule A" [Gallus gallus (taxid:9031)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 108/291 (37%), Positives = 148/291 (50%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH       + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   106 SFHKHSAAPNYTHCGLFGDPHLRTFTDTFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSS 165

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C  +K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct:   166 ATATSKLTIIFKSFQE--CVEQKVYQAEMDE-LPAAFADGSKNGGDKHGANS-LKITEKV 221

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   222 SGQH--IEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDRDSQGLYLCLRGCPLN 278

Query:   197 ERLDIVTSR------GHMTDRDHALAKCKDT---EELSNDIINNLT--DYYLDWCVFDTM 245
             +++D  T R      G    +  +L    +    E  +      L   D Y   CVFD +
Sbjct:   279 QQIDFQTFRLAQAAEGRARRKGPSLPAPPEAFTYESATAKCREKLPVEDLYFQSCVFDLL 338

Query:   246 TAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNV--PDNTNWSE 294
             T G   +F  AA+ A  DV        +N+  L+L E      P N   SE
Sbjct:   339 TTG-DVNFMLAAYYAFEDVKMLH----SNKDKLHLYERTRALAPGNAAPSE 384

GO:0001843 "neural tube closure" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

UNIPROTKB|Q8JG54 RGMA "Repulsive guidance molecule A" [Gallus gallus (taxid:9031)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 108/291 (37%), Positives = 148/291 (50%)

Query:    22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
             SFH       + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN  +  GS 
Sbjct:   131 SFHKHSAAPNYTHCGLFGDPHLRTFTDTFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSS 190

Query:    79 AXXXXXXXXXXXXGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
             A             +   C  +K Y+A+ D  LP +F +   N   K+  N  LK+    
Sbjct:   191 ATATSKLTIIFKSFQE--CVEQKVYQAEMDE-LPAAFADGSKNGGDKHGANS-LKITEKV 246

Query:   139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNT--LQLCTLGCPPS 196
             SG H   EI  KYI TTIVVR+VG+YL  + ++PEE+V  +++D ++  L LC  GCP +
Sbjct:   247 SGQH--IEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVN-AVEDRDSQGLYLCLRGCPLN 303

Query:   197 ERLDIVTSR------GHMTDRDHALAKCKDT---EELSNDIINNLT--DYYLDWCVFDTM 245
             +++D  T R      G    +  +L    +    E  +      L   D Y   CVFD +
Sbjct:   304 QQIDFQTFRLAQAAEGRARRKGPSLPAPPEAFTYESATAKCREKLPVEDLYFQSCVFDLL 363

Query:   246 TAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNV--PDNTNWSE 294
             T G   +F  AA+ A  DV        +N+  L+L E      P N   SE
Sbjct:   364 TTG-DVNFMLAAYYAFEDVKMLH----SNKDKLHLYERTRALAPGNAAPSE 409

GO:0031225 "anchored to membrane" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015026 "coreceptor activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030510 "regulation of BMP signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	295
pfam06534	213	pfam06534, RGM_C, Repulsive guidance molecule (RGM	1e-28
pfam06535	207	pfam06535, RGM_N, Repulsive guidance molecule (RGM	6e-28
pfam00094	159	pfam00094, VWD, von Willebrand factor type D domai	0.004

>gnl|CDD|219075 pfam06534, RGM_C, Repulsive guidance molecule (RGM) C-terminus

 Score =  108 bits (272), Expect = 1e-28
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 33/196 (16%)

Query: 97  CTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTI 156
           CT++K Y+A+ D  LP +F++   N   ++  N +  VE  P  H    EI  +YI TTI
Sbjct: 3   CTDQKVYQAETDD-LPAAFVDGSKNGGDRHGANSLRIVEKVPGRH---VEIHARYIGTTI 58

Query: 157 VVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDI--------------- 201
           +VR+VG+YL  + ++PEE+   + ++   LQLC  GCP S+R+D                
Sbjct: 59  IVRQVGRYLTFAVRMPEEVAN-AYEESQDLQLCLHGCPTSQRIDFGHFHLRAALTGGSRR 117

Query: 202 ----VTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAA 257
               V +   +   + A  KCK+   +         D Y   CVFD +T G   +FTAAA
Sbjct: 118 HGPSVPAPPGIFTLETATTKCKEKLPVE--------DLYFQSCVFDLLTTG-DVNFTAAA 168

Query: 258 HSAQADVLRFDPSSLN 273
           + A  DV    P+   
Sbjct: 169 YYALEDVKALHPNKER 184

This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but RGMA from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum. Length = 213

>gnl|CDD|219076 pfam06535, RGM_N, Repulsive guidance molecule (RGM) N-terminus

 Score =  106 bits (267), Expect = 6e-28
 Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 9/87 (10%)

Query: 13  PPTLPPASC----SFHG----TRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYL 64
             +  P  C    SF         + HCGLFGDPHL+TFN+ +QTC+V+GAWPLIDN YL
Sbjct: 120 EASDSPEPCHYEKSFGRGHGRPPNYLHCGLFGDPHLRTFNDHFQTCKVQGAWPLIDNNYL 179

Query: 65  GVQVTNELIREGSPATVTTKKVTVIIK 91
            VQVTN  +  GS AT T+ K+T+I K
Sbjct: 180 SVQVTNTPVVPGSSATATS-KLTIIFK 205

This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but RGMA from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum. Length = 207

>gnl|CDD|215713 pfam00094, VWD, von Willebrand factor type D domain

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 32 CGLFGDPHLKTFNNDYQTCRVRGAWPLI------DNPYLGVQVTNELIREGSPATVTTKK 85
          C + GDPH  TF+    T     ++ L+        P     V N+ + +G+      K 
Sbjct: 1  CSVSGDPHYTTFDGVSYTFPGNCSYVLVLAQDCSSEPSFKFSVLNKNVNDGAEGVTCLKS 60

Query: 86 VTVIIKG 92
          VTVI+  
Sbjct: 61 VTVILGN 67

Luciferin-2-monooxygenase from Vargula hilgendorfii contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PF06534	179	RGM_C: Repulsive guidance molecule (RGM) C-terminu	100.0
PF06535	161	RGM_N: Repulsive guidance molecule (RGM) N-terminu	100.0
smart00832	76	C8 C8 domain. This domain contains 8 conserved cys	99.4
smart00216	162	VWD von Willebrand factor (vWF) type D domain. Von	99.31
PF08742	74	C8: C8 domain; InterPro: IPR014853 The proteins in	99.21
PF00094	159	VWD: von Willebrand factor type D domain; InterPro	98.91

>PF06534 RGM_C: Repulsive guidance molecule (RGM) C-terminus; InterPro: IPR009496 This entry contains of several mammalian and one bird sequence from Gallus gallus (Chicken) and represents the C-terminal region of several sequences, but in others it represents the full protein

Probab=100.00  E-value=4.6e-55  Score=385.40  Aligned_cols=164  Identities=38%  Similarity=0.676  Sum_probs=155.9

Q ss_pred             ceeeeeeeeccCCCCceeEecCceecccCCCCeeeEEEEecCCCCeeeEEEEEeeeccEEEEeecCCcceeeeecchhhc
Q psy17001         97 CTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELV  176 (295)
Q Consensus        97 c~~~k~y~a~~d~~LP~~F~dgs~~~~~~~G~~~~L~v~~~~~~~~~~VeI~~~yigt~~~Vr~~G~~Ls~svrlPe~~~  176 (295)
                      |++||+|||++|+ ||.+|+|||+++|+ +|.+ +|+|.|+.+|+  ||||+++||||+|+|||+|+||||+|||||+++
T Consensus         1 Ct~qKvYqA~~d~-LP~aF~DGT~~gG~-~g~~-sl~I~e~~~g~--hVEI~a~yIgTtIiVRq~G~yLtfavRmPe~v~   75 (179)
T PF06534_consen    1 CTDQKVYQAETDD-LPAAFVDGTTSGGD-HGAN-SLRILEQSPGR--HVEIQARYIGTTIIVRQVGRYLTFAVRMPEEVA   75 (179)
T ss_pred             CcccceeEccccc-CchhhccCCccCCC-CCCc-cEEEEEeCCCc--EEEEEhhccccEEEEEEeCCccEEEEEchHHHH
Confidence            9999999999999 99999999999999 5777 99999999998  999999999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccCCCCCcccccccc--------------CCCccchhhHHHHhhhhccccccccccchhhhhhhhhh
Q psy17001        177 EPSIQDPNTLQLCTLGCPPSERLDIVTS--------------RGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVF  242 (295)
Q Consensus       177 ~~s~~~~~~~~lC~~gCp~~e~i~~~~~--------------~~~~~~~~~A~~~C~~~~~~~f~~ch~v~d~yf~sCVf  242 (295)
                      + ++++++++|||++|||++|+|+....              .+..++++.|.++|++++        +|+|.|||||||
T Consensus        76 ~-~~~~~~dlqLC~~GCP~~e~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~C~~~l--------~v~D~YFqSCVF  146 (179)
T PF06534_consen   76 E-AFEEEQDLQLCVHGCPRSERIDFREFLAQPRSQKFTRCYGPRSAFPLESATAKCREKL--------PVEDVYFQSCVF  146 (179)
T ss_pred             H-hhccccccchhhcCCCchheeCccccccCcccccCCCCCCCCCcccHHHHHHHhhhhC--------CCcchhhhhcee
Confidence            9 89999999999999999999997432              235689999999999987        899999999999


Q ss_pred             hhhhcCCChhHHHHHHHHHHHHHhcCCCCCCCc
Q psy17001        243 DTMTAGISYDFTAAAHSAQADVLRFDPSSLNNR  275 (295)
Q Consensus       243 Dlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~~r  275 (295)
                      |||+||| .||+++|++|++|+++|||++++|+
T Consensus       147 DLlTTGD-~nft~aA~~AleD~~~l~p~~~~~h  178 (179)
T PF06534_consen  147 DLLTTGD-ANFTAAAYSALEDVKALHPDPERWH  178 (179)
T ss_pred             eeeecCC-ccHHHHHHHHHHHHHHhcCchhccc
Confidence            9999999 9999999999999999999999986

All of the mammalian proteins are hypothetical and have no known function, but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].

>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken)

Probab=100.00  E-value=1.8e-33  Score=244.28  Aligned_cols=77  Identities=60%  Similarity=1.101  Sum_probs=74.1

Q ss_pred             CCCCCCcccCCCCcceeeeeecCCccccccCCceeEEEeeeeecccCCCeEEEEEeecccCCCceeeeceEEEEEEcC
Q psy17001         15 TLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKG   92 (295)
Q Consensus        15 ~~~~~~c~~~~~~~~~~C~~FGDPH~rTFdG~fqTC~~~Ga~pLi~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~   92 (295)
                      ++++++|.|.+.++|+|||+|||||+|||+|+||||+++||||||||+||+|||||+|+++|+.||+++ |||||||+
T Consensus        85 ~~~~~~C~y~~~~~y~hCglFGDPHLRTF~~~fqTC~v~GAWPLIdN~yL~VQvTn~pv~~gs~aTatt-KvTVI~K~  161 (161)
T PF06535_consen   85 PPSPETCHYGPPPNYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNDYLSVQVTNSPVVPGSSATATT-KVTVIFKN  161 (161)
T ss_pred             CCCCCcccCCCCcccceecccCChhHhhccCCceeeeeecceeeecCCcEEEEeeCccccCCccceeee-eEEEEEcC
Confidence            345899999999999999999999999999999999999999999999999999999999999999999 99999995

All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].

>smart00832 C8 C8 domain

Probab=99.40  E-value=1.6e-13  Score=106.01  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             hHHHHhhhhccc--cccccccchhh--hhhhhhhhhhhcCCChhHHHHHHHHHHHHHhcCCCCCC-Ccccccc
Q psy17001        213 HALAKCKDTEEL--SNDIINNLTDY--YLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLN-NRTTLYL  280 (295)
Q Consensus       213 ~A~~~C~~~~~~--~f~~ch~v~d~--yf~sCVfDlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~-~rt~~~~  280 (295)
                      .|..+|..++++  .|.+||.++|+  ||++||||||.++++..-++.|.+||...++.++.... ||+..||
T Consensus         3 ~a~~~C~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~~~~~~~lC~al~aYa~aC~~~Gv~v~~WR~~~~C   75 (76)
T smart00832        3 YACSQCGILLSPRGPFAACHSVVDPEPFFENCVYDTCACGGDCECLCDALAAYAAACAEAGVCISPWRTPTFC   75 (76)
T ss_pred             chhhhhHhhcCCCCChHHHhCcCChHHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHCcCcCCCCCCCCCC
Confidence            478899999999  79999999977  99999999999966588999999999999999999975 9999998

This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.

>smart00216 VWD von Willebrand factor (vWF) type D domain

Probab=99.31  E-value=2.8e-11  Score=102.68  Aligned_cols=134  Identities=22%  Similarity=0.293  Sum_probs=89.0

Q ss_pred             ceeeeeecCCccccccCC---ce-eEEEeeeeecccCCCeEEEEEeecccCCCceeeeceEEEEEEcCCccCceeee-ee
Q psy17001         29 FKHCGLFGDPHLKTFNND---YQ-TCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEK-TY  103 (295)
Q Consensus        29 ~~~C~~FGDPH~rTFdG~---fq-TC~~~Ga~pLi~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~~~~~c~~~k-~y  103 (295)
                      +..|.++||||++||||.   |+ .|.|..+-...+.+.|+|++++.+.  +..++... +|+|.+.+...  ...+ .-
T Consensus         9 ~~~C~v~g~~~~~TFDg~~y~~~g~C~yvL~~~~~~~~~f~V~~~~~~~--~~~~~~~~-~v~v~~~~~~i--~~~~~~~   83 (162)
T smart00216        9 SPTCSVSGDPHYTTFDGVAYTFPGNCYYVLAQDCSSEPTFSVLLKNVPC--GGGATCLK-SVKVELNGDEI--ELKDDNG   83 (162)
T ss_pred             CCEEEEcCCCCeECcCCCEEeecCceEEEEEEECCCCCCEEEEEEecCC--CCCceEEE-EEEEEECCEEE--EEEeCCC
Confidence            349999999999999997   44 7777666665455689999999987  44444555 89999887643  2222 34


Q ss_pred             eeccCC---CCceeEecCceecccCCCCee------eEEEEecCCCCeeeEEEEEe--eeccEEEEeecCCcc---eeee
Q psy17001        104 EAQADS---PLPLSFINSGVNSHSKNADNV------VLKVESDPSGHHERAEIFIK--YIETTIVVRRVGKYL---AVSA  169 (295)
Q Consensus       104 ~a~~d~---~LP~~F~dgs~~~~~~~G~~~------~L~v~~~~~~~~~~VeI~~~--yigt~~~Vr~~G~~L---s~sv  169 (295)
                      ++.+|+   +||....+..+..... +..+      +|.|.|++. +  .+.|+++  |.|.++  .++|+|.   ..+.
T Consensus        84 ~v~vng~~v~~p~~~~~~~v~~~~~-~~~~v~~~~~gl~v~~dg~-~--~~~V~~~~~~~g~~~--GLCGn~ng~~~dDf  157 (162)
T smart00216       84 TVTVNGQQVSLPYKTSDGSIQIRSS-GGYVVVITSLGLQVTFDGL-T--LLSVQLPSRYRGKTC--GLCGNFDGEPEDDF  157 (162)
T ss_pred             EEEECCEEeeCCcCcCCceEEEEEC-ceEEEEECCCCEEEEECCC-c--EEEEEECHHHCCCee--EccCCCCCCccccc
Confidence            666777   3664433332211111 1111      789999863 2  4999999  899999  5566665   3455


Q ss_pred             ecch
Q psy17001        170 KLPE  173 (295)
Q Consensus       170 rlPe  173 (295)
                      ++|+
T Consensus       158 ~~p~  161 (162)
T smart00216      158 RTPD  161 (162)
T ss_pred             cCCC
Confidence            5554

Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.

>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues

Probab=99.21  E-value=1.3e-11  Score=93.59  Aligned_cols=69  Identities=19%  Similarity=0.117  Sum_probs=63.5

Q ss_pred             hhHHHHhhhhccccccccccchhh--hhhhhhhhhhhcCCChhHHHHHHHHHHHHHhcCCCCCC-Ccccccc
Q psy17001        212 DHALAKCKDTEELSNDIINNLTDY--YLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLN-NRTTLYL  280 (295)
Q Consensus       212 ~~A~~~C~~~~~~~f~~ch~v~d~--yf~sCVfDlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~-~rt~~~~  280 (295)
                      +.|...|..++++.|.+||.++|+  ||++|++|+|.++++.+-++.+.++|...++..+.... ||+..+|
T Consensus         2 ~~a~~~C~~l~~~~F~~C~~~v~~~~f~~~C~~d~C~~~~~~~~~C~~l~~Ya~~C~~~g~~~~~WR~~~~C   73 (74)
T PF08742_consen    2 QRAESYCGILLDPEFAPCHSVVDPDPFYEACVYDMCACPGSQQCLCEALSAYARECQRAGICVGDWRTPTLC   73 (74)
T ss_pred             chHhHHhHHHcCchhhhhcccCccHHHHHHHHHHHcCCCCCcchhhHHHHHHHHHHHHCcCCCCCCCCcCCC
Confidence            358899999999999999999976  99999999999987678999999999999999999955 9999988

Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.

>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes

Probab=98.91  E-value=3.3e-09  Score=88.14  Aligned_cols=77  Identities=21%  Similarity=0.358  Sum_probs=49.2

Q ss_pred             eeeecCCccccccCCceeEEEeeeee--cccC---CC-eEEEEEeecccCCCcee-eeceEEEEEEcCCccCceeeeeee
Q psy17001         32 CGLFGDPHLKTFNNDYQTCRVRGAWP--LIDN---PY-LGVQVTNELIREGSPAT-VTTKKVTVIIKGRSTPCTNEKTYE  104 (295)
Q Consensus        32 C~~FGDPH~rTFdG~fqTC~~~Ga~p--Li~n---~~-lsVQvtN~p~~~Gs~at-a~t~kvTVivk~~~~~c~~~k~y~  104 (295)
                      |.++||||++||||..+.+.+.+.|-  |...   .. ++|.+++.+...+.... .++ +|++.+.+...+...-...+
T Consensus         1 C~v~g~~~~~TFDg~~y~~~~~c~y~~vl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~v~i~~~~~~i~i~~~~~~~   79 (159)
T PF00094_consen    1 CSVYGDPHITTFDGKSYSFPGNCTYILVLAQDCSSDPKFSFSVENKNCPCGQSGTSCTR-KVTIRLGNHEIEIKPNNGDQ   79 (159)
T ss_pred             CEEeCCCeEEcCCCCEEecCCCceEEEEeecccCccccccccceeeeeccCCCCcceee-EEEEEcccceeeEeccccce
Confidence            89999999999999977766666677  4433   21 56666655543355444 555 99999987655222221135


Q ss_pred             eccCC
Q psy17001        105 AQADS  109 (295)
Q Consensus       105 a~~d~  109 (295)
                      +.+|+
T Consensus        80 v~vng   84 (159)
T PF00094_consen   80 VTVNG   84 (159)
T ss_pred             EEEee
Confidence            55666

Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00