Psyllid ID: psy17074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
Protein Sequence
VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEccccccHHHHHHHHccEEccccccccccccccccEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHHcccHHHHccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccEEEEccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccEEEEcccccccccEEEcEEEEEccccccccccccccccccEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccEEEEccccccHHHHHHHHccEEccccccccccccccccEEEEEEEcccccEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEcEEEEccccccccccccEEEEEcccEEEcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHcccEEEEEEcccccHccHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHcccHcccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcEEEEEEccccccccEEEEEEEEEccEccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEcc
Coil and Loop (DISEMBL)
vqiykgqfRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEeeeeeeepdeyQKVVDAEWKILYEKLDKIHASGAQvvlsklpigdvatqyfadrdmfcagrvpeedLKRTMKACGGavmttahdlndsvlgtcavfderqigserfnvfsgcknartcTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDysglgdkvrtghpsdnsfhaispdgfemqpktyknpkiALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQvvlsklpigdvatqyFADRvytsqvfrqpQILLlkegtensqgkpqliSNINACQAVVDAVRttlgprgmdklivdqngkstisndgATIMKLLDIVHPAAKTLVDIAKsqdaeiqksdsgeYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSlddllplnmIGIKKVAggaledsllvdgvsFKKTFAyagfemqpktyknpkiALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQvvlsklpigdvatqyfadrdmfcagrvpeedLKRTMKACGGavmttahdlndsvlgtcavfderqigserdtlnre
Flexible Loop (DISEMBL)
vqiykgqfrahfceelrkkkkkkkkkkkkkkkkkkkkkeeeeeeeepdeyqkvVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTtahdlndsVLGTCAVFDERQIGSerfnvfsgcknaRTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTtlgprgmdklivdqngkstisnDGATIMKLLDIVHPAAKTLVDIaksqdaeiqksdsgeyRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAgfemqpktyknpKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTtahdlndsvLGTCAvfderqigserdtlnre
Low Complexity Region (SEG)
VQIYKGQFRAHFCEELRkkkkkkkkkkkkkkkkkkkkkeeeeeeeePDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Disordered region (IsUnstruct)
***************************************************KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS*******************************KNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKE*********QLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA**************YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE*************
Disordered Region (DISOPRED)
VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGD*****HPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR******************************NINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Disordered Region (DISEMBL)
VQIYKGQFRAHFCEELR*********************************QKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Disordered Region (DISPRO)
VQIYKGQFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VQIYKGQFRAHFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRVYTSQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	632	2.2.26 [Sep-21-2011]
Q5ZJK8	553	T-complex protein 1 subun	yes	N/A	0.473	0.540	0.661	1e-129
Q99832	543	T-complex protein 1 subun	yes	N/A	0.473	0.550	0.661	1e-128
Q5R5C8	543	T-complex protein 1 subun	yes	N/A	0.473	0.550	0.659	1e-128
Q2NKZ1	543	T-complex protein 1 subun	yes	N/A	0.473	0.550	0.656	1e-127
P80313	544	T-complex protein 1 subun	yes	N/A	0.473	0.549	0.653	1e-127
P87153	558	Probable T-complex protei	yes	N/A	0.481	0.544	0.555	1e-106
Q54ER7	555	T-complex protein 1 subun	yes	N/A	0.488	0.556	0.544	1e-104
P42943	550	T-complex protein 1 subun	yes	N/A	0.484	0.556	0.529	1e-102
P54409	558	T-complex protein 1 subun	N/A	N/A	0.481	0.544	0.526	8e-96
O77323	539	T-complex protein 1 subun	yes	N/A	0.492	0.576	0.489	5e-90

>sp|Q5ZJK8|TCPH_CHICK T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/352 (66%), Positives = 266/352 (75%), Gaps = 53/352 (15%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           ++LLKEGT+ SQG PQL+SNINACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct: 6   VILLKEGTDTSQGIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATI 65

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI----------------------------------- 412
           +KLLD+VHPAAKTLVDIAKSQDAE+                                   
Sbjct: 66  LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125

Query: 413 ------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                             +K D  E R LLEKCAATALSSKLI Q K FFSKMVVDAVM 
Sbjct: 126 RTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMM 185

Query: 455 LDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           LDDLL L MIGIKKV GGALEDS LV GV+FKKTF+YAGFEMQPK Y++PKIALLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALLNVELE 245

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 574
           LKAE+DNAE+R+++VE+YQ +VDAEW ILY+KLDKIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 246 LKAEKDNAEVRVNTVEDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVATQYFAD 305

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+D VLG C +F+E QIG +R
Sbjct: 306 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDR 357

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Gallus gallus (taxid: 9031)

>sp|Q99832|TCPH_HUMAN T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2

 Score =  461 bits (1185), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/352 (66%), Positives = 265/352 (75%), Gaps = 53/352 (15%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           ++LLKEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct: 6   VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI----------------------------------- 412
           +KLLD+VHPAAKTLVDIAKSQDAE+                                   
Sbjct: 66  LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125

Query: 413 ------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                             +K+D  E R LLEKCA TALSSKLI QQK FF+KMVVDAVM 
Sbjct: 126 RTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMM 185

Query: 455 LDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           LDDLL L MIGIKKV GGALEDS LV GV+FKKTF+YAGFEMQPK Y NPKIALLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELE 245

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 574
           LKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 305

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER
Sbjct: 306 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGER 357

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|Q5R5C8|TCPH_PONAB T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/352 (65%), Positives = 265/352 (75%), Gaps = 53/352 (15%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           ++LLKEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct: 6   VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI----------------------------------- 412
           +KLLD+VHPAAKTLVDIAKSQDAE+                                   
Sbjct: 66  LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125

Query: 413 ------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                             +K+D  E R LLEKCA TALSSKLI QQK FF+KMVVDAVM 
Sbjct: 126 RTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMM 185

Query: 455 LDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           LDDLL L MIGIKKV GGALEDS LV GV+FKKTF+YAGFEMQPK Y NPK+ALLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELE 245

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 574
           LKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 305

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER
Sbjct: 306 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGER 357

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Pongo abelii (taxid: 9601)

>sp|Q2NKZ1|TCPH_BOVIN T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=1 SV=1

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/352 (65%), Positives = 263/352 (74%), Gaps = 53/352 (15%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           ++LLKEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct: 6   VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI----------------------------------- 412
           +KLLD+VHPAAKTLVDIAKSQDAE+                                   
Sbjct: 66  LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125

Query: 413 ------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                             +K D  E R LLEKCA TALSSKLI QQK FF+KMVVDAVM 
Sbjct: 126 RTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMM 185

Query: 455 LDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           LDDLL L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP IALLN+ELE
Sbjct: 186 LDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELE 245

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 574
           LKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 305

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER
Sbjct: 306 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGER 357

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Bos taurus (taxid: 9913)

>sp|P80313|TCPH_MOUSE T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/352 (65%), Positives = 264/352 (75%), Gaps = 53/352 (15%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           ++LLKEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct: 6   VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI----------------------------------- 412
           +KLLD+VHPAAKTLVDIAKSQDAE+                                   
Sbjct: 66  LKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAF 125

Query: 413 ------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                             +K D  E R +LEKCA TALSSKLI QQK FF+KMVVDAVM 
Sbjct: 126 RTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMM 185

Query: 455 LDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           LD+LL L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK YKNPKIALLN+ELE
Sbjct: 186 LDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELE 245

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 574
           LKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+V+LSKLPIGDVATQYFAD
Sbjct: 246 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFAD 305

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L   VLG C VF+E QIG ER
Sbjct: 306 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGGER 357

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Mus musculus (taxid: 10090)

>sp|P87153|TCPH_SCHPO Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct7 PE=1 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/360 (55%), Positives = 251/360 (69%), Gaps = 56/360 (15%)

Query: 326 PQI--LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           PQI  ++LKEGT++SQG+ QL+SNINAC AV D +RTTLGP G DKL+VD  G+  ISND
Sbjct: 6   PQIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISND 65

Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSG----------EYRGLLE-------- 425
           GATIMKLLDIVHPAAKTLVDIA++QDAE+    +           E R  +E        
Sbjct: 66  GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125

Query: 426 -----------------------------------KCAATALSSKLIHQQKGFFSKMVVD 450
                                              KCA+TA++SKLI     FF+KMVVD
Sbjct: 126 IRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVD 185

Query: 451 AVMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
           AV++LD + L  NMIGIKKV GGA+EDSLLV GV+FKKTF+YAGFE QPK +KNPKI  L
Sbjct: 186 AVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCL 245

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           ++ELELKAE+DNAE+R+D V+EYQ +VDAEW+I++ KL+ I A+GA+VVLSKLPIGD+AT
Sbjct: 246 DVELELKAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLAT 305

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           QYFADRD+FCAGRV  +DL R ++A GG++ +T  ++ +  LGTC  F+ERQIG +R  L
Sbjct: 306 QYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNL 365

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54ER7|TCPH_DICDI T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/360 (54%), Positives = 244/360 (67%), Gaps = 51/360 (14%)

Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           SQ+ R P I+LLKEGT+ SQG PQLISNINAC A+VD VRTTLGPRGMDKLI     + T
Sbjct: 2   SQMIRPP-IVLLKEGTDTSQGLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVT 60

Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDS------GEY------------- 420
           ISNDGAT+MKLLDIVHPAA+TLVDIAKSQD+E+    +      GE+             
Sbjct: 61  ISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIH 120

Query: 421 -------------------------------RGLLEKCAATALSSKLIHQQKGFFSKMVV 449
                                          R  LEKCA+T+++SKLI   K FFSKMVV
Sbjct: 121 PQIIIRAFRSACELAKQKIQELSVDIKPENMREFLEKCASTSMNSKLIASHKQFFSKMVV 180

Query: 450 DAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
           DAV  LDD + L+MIGIKK +GG L DS  + G +FK+TF YAGFE QPK  KNPK+  L
Sbjct: 181 DAVQLLDDNIDLDMIGIKKESGGGLGDSQFIAGAAFKRTFFYAGFEQQPKHIKNPKVLCL 240

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           NIELELKAE+DNAEIR+    +YQ +V+AEWK+ ++KL+ IHASG  VVLSKL IGD+AT
Sbjct: 241 NIELELKAEKDNAEIRISDPTKYQSLVNAEWKLFFDKLEAIHASGVNVVLSKLAIGDLAT 300

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           Q+FAD++MFCAGRVP++D++R  +A G A+  T  ++   V+GTC +F+E Q+G +R  L
Sbjct: 301 QFFADKNMFCAGRVPDDDIRRVCRATGAAIQNTTSNIIPDVIGTCDLFEEVQVGGQRYNL 360

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Dictyostelium discoideum (taxid: 44689)

>sp|P42943|TCPH_YEAST T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT7 PE=1 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/359 (52%), Positives = 248/359 (69%), Gaps = 53/359 (14%)

Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           + P I++LKEGT+ SQGK Q+ISNINAC AV +A++ TLGP G D LIV  N K+TISND
Sbjct: 6   QTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISND 65

Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDA--------------EIQK--------------- 414
           GATI+KLLD+VHPAAKTLVDI+++QDA              E+ K               
Sbjct: 66  GATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLI 125

Query: 415 -----------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                                  S+    R LLE+CA TA+SSKLIH    FF KM VDA
Sbjct: 126 MKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDA 185

Query: 452 VMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
           V+SLD + L   +IGIKK+ GGA+E+SL ++GV+FKKTF+YAGFE QPK + NPKI  LN
Sbjct: 186 VLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLN 245

Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
           +ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++  +GA +VLSKLPIGD+ATQ
Sbjct: 246 VELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQ 305

Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           +FADR++FCAGRV  +D+ R ++A GG++ +T  D+    LGTCA+F+E QIGSER  L
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNL 364

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. In yeast may play a role in mitotic spindle formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P54409|TCPH_TETPY T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1

 Score =  351 bits (901), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 189/359 (52%), Positives = 239/359 (66%), Gaps = 55/359 (15%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QP ILLLK+GT+ SQGK Q+ISNINA Q++V+ V+TTLGPRGMDKLI + N  +TISNDG
Sbjct: 3   QPTILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDKLI-EGNRGATISNDG 61

Query: 385 ATIMKLLDIV--------------------------------------------HP---- 396
           ATI+ LLDIV                                            HP    
Sbjct: 62  ATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVT 121

Query: 397 -----AAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                A K  +   +     +     GE R +L KCA T+L+SKL+   K FFS+MVV A
Sbjct: 122 KGYKEALKLALTFLQENSYSVADKSDGEKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQA 181

Query: 452 VMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
           V +LD +LL  ++IGIK V GG++ DS+LV GV+FKKTF+YAGFE QPK + NPKI LLN
Sbjct: 182 VETLDTNLLDKDLIGIKMVTGGSVTDSVLVKGVAFKKTFSYAGFEQQPKKFANPKICLLN 241

Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
           IELELKAE++NAEIR+D+ ++Y+ +VDAEW+++YEKL KI  SGAQ+VLSKLPIGD+ATQ
Sbjct: 242 IELELKAEKENAEIRIDNPDDYKSIVDAEWELIYEKLRKIVESGAQIVLSKLPIGDLATQ 301

Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           YFADR++FCAGRV  ED+KR  KA G  V TT + L+  VLGTC +F+E+QIG+ER  L
Sbjct: 302 YFADRNIFCAGRVDAEDIKRVQKATGSIVQTTVNGLSQDVLGTCGMFEEQQIGAERYNL 360

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Tetrahymena pyriformis (taxid: 5908)

>sp|O77323|TCPH_PLAF7 T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P3.6 PE=3 SV=1

 Score =  332 bits (852), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 230/366 (62%), Gaps = 55/366 (15%)

Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           S +   P I+LLKEGT+ +QG+ Q+I NINACQ +VD V+TTLGPRGMDKLI  +    T
Sbjct: 2   SHLMSLP-IVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTER-DVT 59

Query: 380 ISNDGATIMKLLDIVHPAAKTL-------------------------------------- 401
           I+NDGAT+M LL+I HPAA  L                                      
Sbjct: 60  ITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIE 119

Query: 402 -------------VDIAKSQDAEIQKSDSGE--YRGLLEKCAATALSSKLIHQQKGFFSK 446
                        V I K  +  +  S+  E   R +L KCA TAL+SKL+   K FF +
Sbjct: 120 PNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGE 179

Query: 447 MVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKI 506
           +VV+AV  L D L  + IGIKKV GG+  D+ L+ GV+FKKTF+YAGFE QPK + NPKI
Sbjct: 180 LVVNAVYKLGDNLDKSNIGIKKVTGGSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKI 239

Query: 507 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGD 566
            LLN+ELELKAE++NAE+R+++  EY  +V AEW I+++KL+ I   GA +VLSKLPIGD
Sbjct: 240 LLLNVELELKAEKENAEVRIENPNEYNSIVQAEWDIIFKKLNLIKDCGANIVLSKLPIGD 299

Query: 567 VATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           +ATQ+FAD D+FCAGRV + DLKRT  A G  V T+  +LND VLGTC VF+E QIG+ER
Sbjct: 300 IATQFFADHDIFCAGRVEDADLKRTANATGALVQTSLFNLNDDVLGTCGVFEEVQIGNER 359

Query: 627 DTLNRE 632
             + +E
Sbjct: 360 YNIFKE 365

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
347968503	542	AGAP002762-PA [Anopheles gambiae str. PE	0.482	0.562	0.720	1e-142
157137026	488	chaperonin [Aedes aegypti] gi|108884249|	0.477	0.618	0.712	1e-141
312385844	629	hypothetical protein AND_00274 [Anophele	0.477	0.480	0.721	1e-141
356651208	544	chaperonin [Macrobrachium rosenbergii]	0.482	0.560	0.706	1e-140
157137024	542	chaperonin [Aedes aegypti] gi|108884248|	0.477	0.557	0.712	1e-140
242003180	543	T-complex protein 1 subunit eta, putativ	0.477	0.556	0.709	1e-139
170039250	542	chaperonin [Culex quinquefasciatus] gi|1	0.477	0.557	0.709	1e-139
194743568	545	GF18192 [Drosophila ananassae] gi|190627	0.482	0.559	0.701	1e-137
350396770	547	PREDICTED: T-complex protein 1 subunit e	0.481	0.555	0.697	1e-137
321477028	536	hypothetical protein DAPPUDRAFT_127024 [	0.482	0.569	0.692	1e-136

>gi|347968503|ref|XP_312160.4| AGAP002762-PA [Anopheles gambiae str. PEST] gi|333467975|gb|EAA44880.4| AGAP002762-PA [Anopheles gambiae str. PEST]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/358 (72%), Positives = 284/358 (79%), Gaps = 53/358 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQL+SNINACQ++VDAVRTTLGPRGMDKLIVD  GK+TISNDG
Sbjct: 2   QPQIILLKEGTDTSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDSKGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLLDIVHPAAKTLVDIAKSQDAE                                 
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRIII 121

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K D+ ++R LLEKCAATAL+SKLIHQQK FFSKMVVD+
Sbjct: 122 KAVRKALNLCVAQINELAFKIEKHDTEKHRALLEKCAATALNSKLIHQQKEFFSKMVVDS 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V +LD LLPLNMIGIKKV GGALEDS+LV+GV+FKKTFAYAGFEMQPK+Y N KIALLNI
Sbjct: 182 VTTLDVLLPLNMIGIKKVTGGALEDSMLVEGVAFKKTFAYAGFEMQPKSYDNVKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+R+D+V EYQKVVDAEW+ILY+KL KIH SGAQVVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEVRVDNVAEYQKVVDAEWQILYDKLAKIHQSGAQVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           FADRDMFCAGRVPEEDLKRT+KACGGAVMTT  D++D VLGTCA F+ERQIGSER  L
Sbjct: 302 FADRDMFCAGRVPEEDLKRTLKACGGAVMTTVQDISDKVLGTCAHFEERQIGSERFNL 359

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137026|ref|XP_001656982.1| chaperonin [Aedes aegypti] gi|108884249|gb|EAT48474.1| AAEL000486-PB [Aedes aegypti]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/355 (71%), Positives = 284/355 (80%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQLISNINACQ++VDAVRTTLGPRGMDKLIV+ NGK+TISNDG
Sbjct: 2   QPQIVLLKEGTDTSQGKPQLISNINACQSIVDAVRTTLGPRGMDKLIVENNGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLLDIVHPAAKTLVDIAKSQDAE                                 
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRIII 121

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K D+ ++R LLEKCAATA++SKLIHQQK FFSKMVVDA
Sbjct: 122 KAVRKTLSLCIARINELAFKIEKHDNEKHRALLEKCAATAMNSKLIHQQKDFFSKMVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V +LD LLPLNMIGIKKV GGALE+S+L+DGV+FKKTF+YAGFEMQPK+Y N KIALLNI
Sbjct: 182 VTTLDVLLPLNMIGIKKVTGGALEESMLIDGVAFKKTFSYAGFEMQPKSYDNVKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+R+D+V+EYQKVVDAEW+ILY+KL+KIH SGAQVVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEVRVDNVQEYQKVVDAEWQILYDKLEKIHKSGAQVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADRDMFCAGRV EEDLKRT+KACGGAVMTT  D++D VLGTCA F+ERQ+G ER
Sbjct: 302 FADRDMFCAGRVQEEDLKRTLKACGGAVMTTVQDIDDKVLGTCAHFEERQVGGER 356

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385844|gb|EFR30243.1| hypothetical protein AND_00274 [Anopheles darlingi]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/355 (72%), Positives = 280/355 (78%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQL+SNINACQ++VDAVRTTLGPRGMDKLIVD  GK+TISNDG
Sbjct: 159 QPQIILLKEGTDTSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDNKGKATISNDG 218

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLLDIVHPAAKTLVDIAKSQDAE                                 
Sbjct: 219 ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRIII 278

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K DS ++R LLEKCAATAL+SKLIHQQK FFSKMVVD+
Sbjct: 279 KAVRKALTLCIGQINELAFKIEKHDSEKHRALLEKCAATALNSKLIHQQKEFFSKMVVDS 338

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V +LD LLPLNMIGIKKV GGALEDS+LVDGV+FKKTFAYAGFEMQPK+Y + KIALLNI
Sbjct: 339 VTTLDALLPLNMIGIKKVTGGALEDSMLVDGVAFKKTFAYAGFEMQPKSYNDVKIALLNI 398

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+R+D+V EYQKVVDAEW+ILY+KL KIH SGAQVVLSKLPIGDVATQY
Sbjct: 399 ELELKAERDNAEVRVDNVSEYQKVVDAEWQILYDKLAKIHESGAQVVLSKLPIGDVATQY 458

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADRDMFCAGRVPEEDLKRT KACGGAVMTT  D++D VLG C  F+ERQIGSER
Sbjct: 459 FADRDMFCAGRVPEEDLKRTQKACGGAVMTTVQDISDKVLGRCDHFEERQIGSER 513

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|356651208|gb|AET34921.1| chaperonin [Macrobrachium rosenbergii]

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 281/358 (78%), Gaps = 53/358 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT++SQGKPQLISNINAC AVVDA+RTTLGPRGMDKLIVD  G++TISNDG
Sbjct: 2   QPQIILLKEGTDSSQGKPQLISNINACAAVVDAIRTTLGPRGMDKLIVDSKGQATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------- 412
           ATI+K LDIVHPAAKTLVDIAKSQDAE+                                
Sbjct: 62  ATILKQLDIVHPAAKTLVDIAKSQDAEVGDGTTTVVLLAGQFLHECKRLIEEGVHPHNIV 121

Query: 413 ---------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                                 K D  E R +LEKCA T+++SKLIHQQK FF+KMVVDA
Sbjct: 122 RSFRKATRLAIEKINEISVKVNKQDPKELRSILEKCAGTSMNSKLIHQQKDFFAKMVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           VMSLD LLPL+MIGIKKV GG+LE+SLL+DGV+FKKTF+YAGFEMQPK Y NPKIALLNI
Sbjct: 182 VMSLDSLLPLDMIGIKKVPGGSLEESLLIDGVAFKKTFSYAGFEMQPKRYDNPKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAEIR+++VEEYQK+VD EW ILYEKLD IH SGA+VVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEIRVNNVEEYQKIVDTEWNILYEKLDLIHKSGAKVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           FADRDMFCAGRV EEDLKRTMKACGGA+MTTAHDLNDSVLGTCA F+ERQIG++R  L
Sbjct: 302 FADRDMFCAGRVVEEDLKRTMKACGGAIMTTAHDLNDSVLGTCAKFEERQIGADRYNL 359

Source: Macrobrachium rosenbergii

Species: Macrobrachium rosenbergii

Genus: Macrobrachium

Family: Palaemonidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137024|ref|XP_001656981.1| chaperonin [Aedes aegypti] gi|108884248|gb|EAT48473.1| AAEL000486-PA [Aedes aegypti]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/355 (71%), Positives = 284/355 (80%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQLISNINACQ++VDAVRTTLGPRGMDKLIV+ NGK+TISNDG
Sbjct: 2   QPQIVLLKEGTDTSQGKPQLISNINACQSIVDAVRTTLGPRGMDKLIVENNGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLLDIVHPAAKTLVDIAKSQDAE                                 
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFVEEGVHPRIII 121

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K D+ ++R LLEKCAATA++SKLIHQQK FFSKMVVDA
Sbjct: 122 KAVRKTLSLCIARINELAFKIEKHDNEKHRALLEKCAATAMNSKLIHQQKDFFSKMVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V +LD LLPLNMIGIKKV GGALE+S+L+DGV+FKKTF+YAGFEMQPK+Y N KIALLNI
Sbjct: 182 VTTLDVLLPLNMIGIKKVTGGALEESMLIDGVAFKKTFSYAGFEMQPKSYDNVKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+R+D+V+EYQKVVDAEW+ILY+KL+KIH SGAQVVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEVRVDNVQEYQKVVDAEWQILYDKLEKIHKSGAQVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADRDMFCAGRV EEDLKRT+KACGGAVMTT  D++D VLGTCA F+ERQ+G ER
Sbjct: 302 FADRDMFCAGRVQEEDLKRTLKACGGAVMTTVQDIDDKVLGTCAHFEERQVGGER 356

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003180|ref|XP_002422641.1| T-complex protein 1 subunit eta, putative [Pediculus humanus corporis] gi|212505442|gb|EEB09903.1| T-complex protein 1 subunit eta, putative [Pediculus humanus corporis]

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/355 (70%), Positives = 279/355 (78%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGTENSQG  Q++SNINACQAVV+AVRTTLGPRGMDKLIV  +GK+TISNDG
Sbjct: 2   QPQIILLKEGTENSQGVAQVVSNINACQAVVEAVRTTLGPRGMDKLIVGNDGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------- 412
           ATIMKLLDIVHPAAKTLVDIAKSQDAE+                                
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLTGEFLKQVKPFIEEGVHPRIII 121

Query: 413 ---------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                                +KS   E RGLLEKCA+TALSSKLIHQQK FF+ MVV+A
Sbjct: 122 KSLRKATQLAVEKIKALAQNVEKSKPNEQRGLLEKCASTALSSKLIHQQKDFFANMVVNA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V+SLD+LLPLNMIGIKKV GGALEDSLL  GV+FKKTF+YAGFEMQPKTYKNPKIALLNI
Sbjct: 182 VLSLDELLPLNMIGIKKVTGGALEDSLLTQGVAFKKTFSYAGFEMQPKTYKNPKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAER NAE+R+DSV EYQKVVDAEW+ILY+KL+ IH SGAQ+VLSKLP+GDVATQY
Sbjct: 242 ELELKAERTNAEVRVDSVSEYQKVVDAEWQILYDKLELIHKSGAQIVLSKLPVGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADRDMFCAGRV EEDLKRTMKACGGA+M TA+DLN+SVLG C  F+E+QIG ER
Sbjct: 302 FADRDMFCAGRVDEEDLKRTMKACGGAIMATAYDLNESVLGKCEKFEEKQIGGER 356

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039250|ref|XP_001847454.1| chaperonin [Culex quinquefasciatus] gi|167862855|gb|EDS26238.1| chaperonin [Culex quinquefasciatus]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/355 (70%), Positives = 284/355 (80%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQLISNINACQ++VDAVRTTLGPRGMDKLIV+ NGK+TISNDG
Sbjct: 2   QPQIVLLKEGTDTSQGKPQLISNINACQSIVDAVRTTLGPRGMDKLIVENNGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLLDIVHPAAKTLVDIAKSQDAE                                 
Sbjct: 62  ATIMKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQLKPFIEEGVHPRIAI 121

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K D+ ++R LLEKCAATA++SKLIHQQK FFSKMVVDA
Sbjct: 122 KAVRKALNLCVSRINELAFKIEKHDNEKHRALLEKCAATAMNSKLIHQQKDFFSKMVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V +LD LLPLNMIGIKK+AGGALE+S+L+DGV+FKKTFAYAGFEMQPK+Y+N KIALLNI
Sbjct: 182 VTTLDVLLPLNMIGIKKIAGGALEESMLIDGVAFKKTFAYAGFEMQPKSYENVKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+R+D+V EYQKVVDAEW+ILY+KL+KI+ SGAQVVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEVRVDNVAEYQKVVDAEWQILYDKLEKIYKSGAQVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADRDMFCAGRV EEDLKRT+KACGGAVMTT  D++D VLG CA F+ERQ+G ER
Sbjct: 302 FADRDMFCAGRVQEEDLKRTLKACGGAVMTTVTDIDDKVLGKCAHFEERQVGGER 356

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743568|ref|XP_001954272.1| GF18192 [Drosophila ananassae] gi|190627309|gb|EDV42833.1| GF18192 [Drosophila ananassae]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/358 (70%), Positives = 277/358 (77%), Gaps = 53/358 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGT+ SQGKPQL+SNINACQ++VDAVRTTLGPRGMDKLIVD  GK+TISNDG
Sbjct: 2   QPQIVLLKEGTDTSQGKPQLVSNINACQSIVDAVRTTLGPRGMDKLIVDSQGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAE--------------------------------- 411
           ATIMKLL+IVHPAAKTLVDIAKSQDAE                                 
Sbjct: 62  ATIMKLLEIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQVKPFVEEGVHPRVII 121

Query: 412 --------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                               I+K    E R LLEKCAATA+SSKLIHQQK FFSK+VVDA
Sbjct: 122 KAIRKALQLCMEKINEMAVQIEKQSKEEQRALLEKCAATAMSSKLIHQQKDFFSKIVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V+SLD+LLPLNMIGIKKV GG+LE+S L+ GV+FKKTFAYAGFEM PK+Y   KIALLNI
Sbjct: 182 VLSLDELLPLNMIGIKKVTGGSLEESQLISGVAFKKTFAYAGFEMAPKSYDKCKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAEIR+D+V+EYQKVVDAEW+ILY KL KIH SGA VVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEIRVDNVKEYQKVVDAEWQILYNKLAKIHESGANVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           FADRD+FCAGRVPEEDLKRTMKACGGAVMTTA+D+N SVLG C  F+ERQ+G ER  L
Sbjct: 302 FADRDIFCAGRVPEEDLKRTMKACGGAVMTTANDINASVLGLCEHFEERQVGGERFNL 359

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396770|ref|XP_003484660.1| PREDICTED: T-complex protein 1 subunit eta-like isoform 2 [Bombus impatiens]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/357 (69%), Positives = 279/357 (78%), Gaps = 53/357 (14%)

Query: 323 FRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISN 382
            RQPQI+LLKEGT+ SQGK QLISNINACQ VVDAVRTTLGPRGMDKLIVDQNGK+TISN
Sbjct: 5   MRQPQIILLKEGTDASQGKQQLISNINACQIVVDAVRTTLGPRGMDKLIVDQNGKATISN 64

Query: 383 DGATIMKLLDIVHPAAKTLVDIAKSQDAE------------------------------- 411
           DGATI+KLL+IVHPAAKTLVDIAKSQDAE                               
Sbjct: 65  DGATILKLLEIVHPAAKTLVDIAKSQDAEVGDGTTSVVLLAGEFLKQMKPFIEEGVHPRI 124

Query: 412 ----------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
                                 I KSD  +   LLE+CAAT++SSKLIHQQK FFS+MVV
Sbjct: 125 MIKALRLALQVAIEKINAVSVKIDKSDQTKLVELLEECAATSMSSKLIHQQKEFFSRMVV 184

Query: 450 DAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
            AVM LD++LPLNMIGIKKV+GGALEDS L+ GV+FKKTF+YAGFEMQPK Y++ KIALL
Sbjct: 185 KAVMMLDEMLPLNMIGIKKVSGGALEDSELIKGVAFKKTFSYAGFEMQPKKYQDCKIALL 244

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           NIELELKAERDNAEIR+D+V EYQK+VDAEW+ILY+KLDKIH SGAQVVLSKLPIGDVAT
Sbjct: 245 NIELELKAERDNAEIRVDNVMEYQKIVDAEWQILYDKLDKIHKSGAQVVLSKLPIGDVAT 304

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           QYFADRDMFCAGRVPEEDLKRTMKACGG+++TT HD+ +S LG C +F+ERQIG ER
Sbjct: 305 QYFADRDMFCAGRVPEEDLKRTMKACGGSILTTVHDIKESDLGRCEMFEERQIGGER 361

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477028|gb|EFX87987.1| hypothetical protein DAPPUDRAFT_127024 [Daphnia pulex]

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/358 (69%), Positives = 277/358 (77%), Gaps = 53/358 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QPQI+LLKEGTE SQG+ Q+ISNINACQA+VD VRTTLGPRGMDKL+VD  GK+TISNDG
Sbjct: 2   QPQIILLKEGTEASQGRSQIISNINACQAIVDCVRTTLGPRGMDKLMVDMGGKATISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------- 412
           ATIMKLLD+VHPAAKTLVDIAKSQDAE+                                
Sbjct: 62  ATIMKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEFLKQMKPFVEEGVHSQIII 121

Query: 413 ---------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                                +K D  E R LLEKCAATA+ SKLI+QQK FFSKMVVDA
Sbjct: 122 RGVRRATQLAVQFINEIAEKPKKDDETELRQLLEKCAATAMGSKLINQQKDFFSKMVVDA 181

Query: 452 VMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           V+ LDDLLPLNMIGIKKV GGALED+LLV GV+FKKTF+YAGFEMQPK Y +PKIALLNI
Sbjct: 182 VLMLDDLLPLNMIGIKKVPGGALEDTLLVAGVAFKKTFSYAGFEMQPKQYTDPKIALLNI 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAERDNAE+RL++VEEYQKVVDAEW ILY+KL+K+H SGA+VVLSKLPIGDVATQY
Sbjct: 242 ELELKAERDNAEVRLENVEEYQKVVDAEWTILYDKLEKLHLSGAKVVLSKLPIGDVATQY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           FADRDMFCAGRVP+EDLKRTMKACGG+++TT  DL DSVLGTC  F+E QIG +R  L
Sbjct: 302 FADRDMFCAGRVPDEDLKRTMKACGGSILTTVADLGDSVLGTCQHFEESQIGGDRFNL 359

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
FB|FBgn0037632	544	Tcp-1eta "Tcp-1eta" [Drosophil	0.379	0.441	0.712	8.9e-128
UNIPROTKB|Q5ZJK8	553	CCT7 "T-complex protein 1 subu	0.357	0.408	0.734	4.5e-122
UNIPROTKB|B8ZZC9	501	CCT7 "T-complex protein 1 subu	0.473	0.596	0.751	4.7e-119
ZFIN|ZDB-GENE-020419-7	547	cct7 "chaperonin containing TC	0.375	0.433	0.681	2e-117
WB|WBGene00020391	535	cct-7 [Caenorhabditis elegans	0.381	0.450	0.624	3.9e-110
TAIR|locus:2081491	557	AT3G11830 [Arabidopsis thalian	0.386	0.438	0.581	2.4e-106
CGD|CAL0003198	549	CCT7 [Candida albicans (taxid:	0.348	0.400	0.617	7.5e-101
ASPGD|ASPL0000028827	563	cct7 [Emericella nidulans (tax	0.363	0.408	0.579	7.6e-99
UNIPROTKB|F1NK38	539	F1NK38 "Uncharacterized protei	0.259	0.304	0.768	1.3e-66
UNIPROTKB|F1NZN1	520	F1NZN1 "Uncharacterized protei	0.259	0.315	0.768	1.3e-66

FB|FBgn0037632 Tcp-1eta "Tcp-1eta" [Drosophila melanogaster (taxid:7227)]

 Score = 875 (313.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
 Identities = 171/240 (71%), Positives = 200/240 (83%)

Query:   390 LLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
             ++  +  A +  ++       +I +    + R LLEKCAATA+SSKLIHQQK FFS++VV
Sbjct:   120 IIKAIRKALQLCMEKINEMAVQIVEQSKDQQRALLEKCAATAMSSKLIHQQKDFFSRIVV 179

Query:   450 DAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
             DAV+SLD+LLPLNMIGIKKV GG+LE+S LV GV+FKKTF+YAGFEM PK+Y N KIALL
Sbjct:   180 DAVLSLDELLPLNMIGIKKVTGGSLEESQLVSGVAFKKTFSYAGFEMAPKSYDNCKIALL 239

Query:   510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
             NIELELKAERDNAEIR+D+V+EYQKVVDAEW+ILY KL KIH SGA VVLSKLPIGDVAT
Sbjct:   240 NIELELKAERDNAEIRVDNVKEYQKVVDAEWQILYNKLAKIHESGANVVLSKLPIGDVAT 299

Query:   570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
             QYFADRD+FCAGRVPEEDLKRTMKACGGAVMTTA+D+  +VLG C  F+ERQ+G ER  L
Sbjct:   300 QYFADRDIFCAGRVPEEDLKRTMKACGGAVMTTANDIKPNVLGLCEHFEERQVGGERFNL 359

GO:0006457 "protein folding" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0005832 "chaperonin-containing T-complex" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5ZJK8 CCT7 "T-complex protein 1 subunit eta" [Gallus gallus (taxid:9031)]

 Score = 855 (306.0 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 169/230 (73%), Positives = 194/230 (84%)

Query:   397 AAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
             A   + DIA S    ++K D  E R LLEKCAATALSSKLI Q K FFSKMVVDAVM LD
Sbjct:   132 AVNKIKDIAVS----VKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLD 187

Query:   457 DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK 516
             DLL L MIGIKKV GGALEDS LV GV+FKKTF+YAGFEMQPK Y++PKIALLN+ELELK
Sbjct:   188 DLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALLNVELELK 247

Query:   517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD 576
             AE+DNAE+R+++VE+YQ +VDAEW ILY+KLDKIH SGA+VVLSKLPIGDVATQYFADRD
Sbjct:   248 AEKDNAEVRVNTVEDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVATQYFADRD 307

Query:   577 MFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
             MFCAGRVPEEDLKRTM ACGG++ T+ + L+D VLG C +F+E QIG +R
Sbjct:   308 MFCAGRVPEEDLKRTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDR 357

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B8ZZC9 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 233/310 (75%), Positives = 265/310 (85%)

Query:   328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
             ++LLKEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI
Sbjct:     6 VILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATI 65

Query:   388 MKLLDIVHPAAKTLVDIAKSQDAE-----------IQKSDSGEYRGLLEKCAATALSSKL 436
             +KLLD+VHPAAKTLVDIAKSQDAE           ++K+D  E R LLEKCA TALSSKL
Sbjct:    66 LKLLDVVHPAAKTLVDIAKSQDAEAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKL 125

Query:   437 IHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEM 496
             I QQK FF+KMVVDAVM LDDLL L MIGIKKV GGALEDS LV GV+FKKTF+YAGFEM
Sbjct:   126 ISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEM 185

Query:   497 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 556
             QPK Y NPKIALLN+ELELKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+
Sbjct:   186 QPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAK 245

Query:   557 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAV 616
             VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C V
Sbjct:   246 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQV 305

Query:   617 FDERQIGSER 626
             F+E QIG ER
Sbjct:   306 FEETQIGGER 315

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-020419-7 cct7 "chaperonin containing TCP1, subunit 7 (eta)" [Danio rerio (taxid:7955)]

 Score = 813 (291.2 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
 Identities = 165/242 (68%), Positives = 195/242 (80%)

Query:   386 TIMKLLDIVHP-AAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFF 444
             TI++   I    A K + +IA +    I+K D  E R LLEKCAATAL+SKLI  QK FF
Sbjct:   120 TIIRAFRIATQLAVKKIKEIAVT----IKKDDKQEQRRLLEKCAATALNSKLIAGQKDFF 175

Query:   445 SKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNP 504
             SKMVVDAVM LDDLLPL MIG+KKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP
Sbjct:   176 SKMVVDAVMMLDDLLPLKMIGVKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKRYMNP 235

Query:   505 KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI 564
             KIALLNIELELKAE+DNAE+R++S+E+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPI
Sbjct:   236 KIALLNIELELKAEKDNAEVRVNSMEDYQAIVDAEWNILYDKLEKIHKSGAKVVLSKLPI 295

Query:   565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 624
             GDVATQYFA R++FCA RV EE+LKRTM ACGG++ T+   L D VLG C +F+E Q+G 
Sbjct:   296 GDVATQYFAYRNLFCAARVVEENLKRTMMACGGSIQTSVGSLTDDVLGQCELFEEVQVGG 355

Query:   625 ER 626
             ER
Sbjct:   356 ER 357

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00020391 cct-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 760 (272.6 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
 Identities = 153/245 (62%), Positives = 189/245 (77%)

Query:   383 DGATIMKLLDIVHPAA-KTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQK 441
             DG     L+  +  A  KTL ++A   D EI+ +   E R +L KCAAT LSSKL+ Q++
Sbjct:   114 DGVHPQLLIRAIGKACEKTLKNLA---DLEIKINGETELREMLVKCAATTLSSKLVSQER 170

Query:   442 GFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTY 501
              FF+ M+VDAV +LD  LPLNMIGIKKV GG L +S L+ GV+F+K F+YAGFEMQPK Y
Sbjct:   171 LFFANMIVDAVNTLDAHLPLNMIGIKKVNGGNLHESRLIKGVAFQKAFSYAGFEMQPKKY 230

Query:   502 KNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSK 561
              N K+ALLNIELELKAE++NAE+RL +V ++Q VVDAEW ILY+KL KIH SGA VVLSK
Sbjct:   231 SNVKVALLNIELELKAEKENAEMRLTNVSDFQAVVDAEWNILYDKLQKIHDSGANVVLSK 290

Query:   562 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQ 621
             LPIGDVATQ+FADRDMFCAGR+P++DL R M ACGG+V+TT   ++DSVLG C  F E+Q
Sbjct:   291 LPIGDVATQWFADRDMFCAGRIPQDDLDRLMSACGGSVLTTVSQIDDSVLGKCGKFYEQQ 350

Query:   622 IGSER 626
             +GSER
Sbjct:   351 VGSER 355

GO:0005737 "cytoplasm" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

TAIR|locus:2081491 AT3G11830 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 142/244 (58%), Positives = 176/244 (72%)

Query:   383 DGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKG 442
             DG     L+     A+   +   K     I+     E +GLL KCAAT LSSKLI  +K 
Sbjct:   117 DGVHAQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKE 176

Query:   443 FFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK 502
             FF+ MVVDAVM++ +   LN+IGIKKV GG + DS LVDGV+FKKTF+YAGFE QPK + 
Sbjct:   177 FFATMVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFL 236

Query:   503 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKL 562
             NPKI LLNIELELK+E++NAEIRL    +YQ +VDAEW I+Y+KLDK   SGA+VVLS+L
Sbjct:   237 NPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVESGAKVVLSRL 296

Query:   563 PIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
              IGD+ATQYFADRD+FCAGRV EEDL R   A GG V T+ +++ D VLGTC +F+E+Q+
Sbjct:   297 AIGDLATQYFADRDIFCAGRVAEEDLNRVAAAAGGTVQTSVNNIIDEVLGTCEIFEEKQV 356

Query:   623 GSER 626
             G ER
Sbjct:   357 GGER 360

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

CGD|CAL0003198 CCT7 [Candida albicans (taxid:5476)]

 Score = 714 (256.4 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 137/222 (61%), Positives = 178/222 (80%)

Query:   407 SQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD-DLLPLNMIG 465
             S D     +DSG +R LLEKCA TA+SSKLI     FF+KMVVDAV++LD + L  N+IG
Sbjct:   144 SIDVLENNTDSGNFRDLLEKCATTAMSSKLIKTNSKFFTKMVVDAVLTLDRNDLNENLIG 203

Query:   466 IKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIR 525
             IKKV GG+LEDSL +DGV+FKKTF+YAGFE QPK++ NPKI  LN+ELELKAE+DNAEIR
Sbjct:   204 IKKVPGGSLEDSLFIDGVAFKKTFSYAGFEQQPKSFSNPKILCLNVELELKAEKDNAEIR 263

Query:   526 LDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPE 585
             +D V +YQ++VDAEWKI+++KL+ I+ +GAQ+VLSKLPIGD+ATQYFADR++FCAGRV +
Sbjct:   264 IDQVNQYQQIVDAEWKIIFDKLESIYQTGAQIVLSKLPIGDLATQYFADRNIFCAGRVSD 323

Query:   586 EDLKRTMKACGGAVMTTAHDL-NDSVLGTCAVFDERQIGSER 626
             +D+ R ++A GG + ++  +L  D  LG C  F+E QIG+ER
Sbjct:   324 DDMNRVIQAVGGDIQSSCSNLLKDGKLGQCESFEEIQIGNER 365

GO:0005634 "nucleus" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ASPGD|ASPL0000028827 cct7 [Emericella nidulans (taxid:162425)]

 Score = 693 (249.0 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
 Identities = 139/240 (57%), Positives = 179/240 (74%)

Query:   394 VHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 453
             V   A  ++D A S++ +I+          L + AATA++SKLI +   FF+KMVVDAV+
Sbjct:   140 VKEIAVDMIDAAGSEEKKIET---------LRRLAATAMNSKLIKRNSDFFTKMVVDAVL 190

Query:   454 SLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
             SLD D L   +IG+KKV GG L+DSL V+GV+FKKTF+YAGFE QPK++KNPKI  LN+E
Sbjct:   191 SLDQDDLNEKLIGVKKVTGGGLQDSLFVNGVAFKKTFSYAGFEQQPKSFKNPKIVCLNVE 250

Query:   513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
             LELK+E+DNAE+R++ V EYQ +VDAEW+I+Y KL+ I+ SGA+VVLSKLPIGD+ATQYF
Sbjct:   251 LELKSEKDNAEVRVEQVSEYQAIVDAEWQIIYNKLEAIYKSGAKVVLSKLPIGDLATQYF 310

Query:   573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632
             ADRD+FCAGRV  +D+ R  +A G AV +T  D+ D  LGTC  F+ERQIG ER  L  E
Sbjct:   311 ADRDVFCAGRVASDDMDRVCQATGAAVQSTCSDIQDRHLGTCGSFEERQIGGERYNLFSE 370

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NK38 F1NK38 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 126/164 (76%), Positives = 146/164 (89%)

Query:    48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
             ++YQ +VDAEW ILY+KLDKIH SGA+VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK
Sbjct:   248 EDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 307

Query:   108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
             RTM ACGG++ T+ + L+D VLG C +F+E QIG +R+N F+GC  A+TCTII+RGGAEQ
Sbjct:   308 RTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDRYNFFTGCPKAKTCTIILRGGAEQ 367

Query:   168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
             F+EETERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct:   368 FMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 411

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|F1NZN1 F1NZN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 126/164 (76%), Positives = 146/164 (89%)

Query:    48 DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
             ++YQ +VDAEW ILY+KLDKIH SGA+VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK
Sbjct:   237 EDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 296

Query:   108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
             RTM ACGG++ T+ + L+D VLG C +F+E QIG +R+N F+GC  A+TCTII+RGGAEQ
Sbjct:   297 RTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDRYNFFTGCPKAKTCTIILRGGAEQ 356

Query:   168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
             F+EETERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct:   357 FMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 400

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZJK8	TCPH_CHICK	No assigned EC number	0.6619	0.4731	0.5406	yes	N/A
P42943	TCPH_YEAST	No assigned EC number	0.5292	0.4841	0.5563	yes	N/A
Q5R5C8	TCPH_PONAB	No assigned EC number	0.6590	0.4731	0.5506	yes	N/A
Q2NKZ1	TCPH_BOVIN	No assigned EC number	0.6562	0.4731	0.5506	yes	N/A
P80313	TCPH_MOUSE	No assigned EC number	0.6534	0.4731	0.5496	yes	N/A
Q99832	TCPH_HUMAN	No assigned EC number	0.6619	0.4731	0.5506	yes	N/A
Q54ER7	TCPH_DICDI	No assigned EC number	0.5444	0.4889	0.5567	yes	N/A
P87153	TCPH_SCHPO	No assigned EC number	0.5555	0.4810	0.5448	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	632
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	0.0
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	1e-170
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	1e-109
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	1e-93
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	7e-68
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	8e-64
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	1e-62
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	1e-58
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	6e-51
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	1e-49
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	2e-45
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	6e-43
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	5e-42
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	6e-42
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	8e-42
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	4e-39
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	6e-38
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	6e-36
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	1e-35
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	3e-35
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	4e-35
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	5e-35
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	1e-34
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	1e-33
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	7e-32
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	3e-31
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	4e-31
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	7e-31
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	1e-28
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	5e-28
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-26
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	3e-24
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	7e-23
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	8e-23
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	1e-22
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	3e-22
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	1e-20
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	2e-20
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	4e-20
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-19
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	2e-18
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	9e-18
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	5e-16
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	6e-16
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	1e-15
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	3e-15
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	9e-15
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	3e-12
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	8e-12
cd03334	261	cd03334, Fab1_TCP, TCP-1 like domain of the eukary	1e-11
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	4e-11
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	8e-11
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	9e-11
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	6e-10
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	1e-09
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	8e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	4e-05
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	7e-05
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	1e-04
cd03334	261	cd03334, Fab1_TCP, TCP-1 like domain of the eukary	2e-04
cd03344	520	cd03344, GroEL, GroEL_like type I chaperonin	2e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	3e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	4e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	4e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	4e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	5e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	9e-04
PTZ00114	555	PTZ00114, PTZ00114, Heat shock protein 60; Provisi	9e-04
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.001
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.001
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.001
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	0.001
PRK12849	542	PRK12849, groEL, chaperonin GroEL; Reviewed	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.002
cd13156	152	cd13156, KOW_RPL6, KOW motif of Ribosomal Protein	0.002
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.003
PRK12851	541	PRK12851, groEL, chaperonin GroEL; Reviewed	0.003
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.003
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.003

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score =  573 bits (1478), Expect = 0.0
 Identities = 227/353 (64%), Positives = 260/353 (73%), Gaps = 53/353 (15%)

Query: 327 QILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGAT 386
            I+LLKEGT+ SQGK QLISNINACQA+ DAVRTTLGPRGMDKLIVD  GK TISNDGAT
Sbjct: 1   PIILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGAT 60

Query: 387 IMKLLDIVHPAAKTLVDIAKSQDA------------------------------------ 410
           I+KLLDIVHPAAKTLVDIAKSQDA                                    
Sbjct: 61  ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120

Query: 411 -----------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 453
                             I K D  E R LLEKCAATAL+SKLI  +K FF+KMVVDAV+
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180

Query: 454 SLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL 513
           SLDD L L+MIGIKKV GG+LEDS LV+GV+FKKTF+YAGFE QPK +KNPKI LLN+EL
Sbjct: 181 SLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVEL 240

Query: 514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 573
           ELKAE+DNAE+R++  EEYQ +VDAEWKI+Y+KL+KI  SGA VVLSKLPIGD+ATQYFA
Sbjct: 241 ELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFA 300

Query: 574 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           DRD+FCAGRVPEEDLKR  +A GG++ TT  ++ D VLGTC +F+ERQ+G ER
Sbjct: 301 DRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGER 353

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score =  494 bits (1274), Expect = e-170
 Identities = 220/355 (61%), Positives = 260/355 (73%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           +P I+LLKEGT+ SQGK QLISNINAC A+ +A++TTLGPRGMDKLIV  NGK+T+SNDG
Sbjct: 1   RPTIVLLKEGTDTSQGKGQLISNINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDG 60

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQD--------------AEIQKS--------------- 415
           ATI+KLLDIVHPAAKTLVDIAKSQD               E+ K                
Sbjct: 61  ATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLII 120

Query: 416 -----------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAV 452
                                  + GE R LLEKCAATALSSKLI   K FFSKM+VDAV
Sbjct: 121 RGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFFSKMIVDAV 180

Query: 453 MSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           +SLD D L L +IG+KKV GGALEDS+LV+GV+FKKTF+YAGFE QPK + NPKI LLN+
Sbjct: 181 LSLDRDDLDLKLIGVKKVQGGALEDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 240

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAE+DNAEIR++ VE+YQ +VDAEW I++EKL KI  SGA +VLSKLPIGD+ATQY
Sbjct: 241 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQY 300

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FAD ++FCAGRV  ED+KR +KACGG++ +T  DL   VLGTCA+F+ERQIGSER
Sbjct: 301 FADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSER 355

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score =  339 bits (871), Expect = e-109
 Identities = 126/178 (70%), Positives = 152/178 (85%), Gaps = 3/178 (1%)

Query: 37  KKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 93
           K E++  E   E+P+EYQ +VDAEWKI+Y+KL+KI  SGA VVLSKLPIGD+ATQYFADR
Sbjct: 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR 302

Query: 94  DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
           D+FCAGRVPEEDLKR  +A GG++ TT  ++ D VLGTC +F+ERQ+G ER+N+F+GC  
Sbjct: 303 DIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK 362

Query: 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct: 363 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 420

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score =  298 bits (764), Expect = 1e-93
 Identities = 120/178 (67%), Positives = 148/178 (83%)

Query: 34  KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 93
           K +K   E   E+ ++YQ +VDAEW I++EKL KI  SGA +VLSKLPIGD+ATQYFAD 
Sbjct: 245 KAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVESGANIVLSKLPIGDLATQYFADH 304

Query: 94  DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN 153
           ++FCAGRV  ED+KR +KACGG++ +T  DL   VLGTCA+F+ERQIGSER+N+F+GC +
Sbjct: 305 NIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFTGCPH 364

Query: 154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           A+TCTII+RGGAEQF+EE ERSLHDAIMIVRR ++N  +VAGGGAIEMELSK LRDYS
Sbjct: 365 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYS 422

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score =  228 bits (583), Expect = 7e-68
 Identities = 108/346 (31%), Positives = 158/346 (45%), Gaps = 96/346 (27%)

Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
            E   G+   +SNINA +A+ DAV+TTLGP+GMDK++VD  G  TI+NDGATI+K +++ 
Sbjct: 1   KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60

Query: 395 HPAAKTLVDIAKSQDAEI---------------QKSDSGEYRGL--------LEKCAATA 431
           HPAAK LV++AKSQD E+               ++++     G+         EK    A
Sbjct: 61  HPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKA 120

Query: 432 L--------------------------SSKLIHQQKGFFSKMVVDAVMSLDDL---LPLN 462
           L                          +SKL+     F  ++VVDAV+ +      + L 
Sbjct: 121 LEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLG 180

Query: 463 MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA 522
           +I ++K  GG+LEDS LV G+ F K +        PK  +N KI LL+ +LE        
Sbjct: 181 VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLE-------- 229

Query: 523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGR 582
                                             VV+++  I D A  Y A   +    R
Sbjct: 230 ---------------------------------YVVIAEKGIDDEALHYLAKLGIMAVRR 256

Query: 583 VPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
           V +EDL+R  KA G  +++   DL    LGT  + +E +IG E+ T
Sbjct: 257 VRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYT 302

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score =  219 bits (559), Expect = 8e-64
 Identities = 118/354 (33%), Positives = 181/354 (51%), Gaps = 58/354 (16%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           +L+LKEGT+ + G+     NI A +AV +AVRTTLGP+GMDK++VD  G  TI+NDGATI
Sbjct: 1   VLILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATI 60

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
           +K +DI HPAAK LV++AK+QD E                                    
Sbjct: 61  LKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGY 120

Query: 412 -------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
                        I      + +  L K A T+L+ K     K   + +VVDAV+ + + 
Sbjct: 121 RLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEK 180

Query: 459 LP------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
                   L+ I I+K  GG+++D+ L+ G+   K   + G    PK  +N KIALL+  
Sbjct: 181 RDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLDAP 237

Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
           LE+K    +A+IR+ S ++ Q  ++ E  +L E +DKI  +GA VV  +  I D+A  Y 
Sbjct: 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYL 297

Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           A   +    RV + D+++  +A G  ++T   DL    LG   + +ER++G ++
Sbjct: 298 AKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDK 351

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score =  215 bits (549), Expect = 1e-62
 Identities = 108/326 (33%), Positives = 164/326 (50%), Gaps = 58/326 (17%)

Query: 354 VVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQ 413
           + DAV+TTLGP+G +K++V+  GK TI+NDGATI+K ++I HPAAK LV+ AKSQD E+ 
Sbjct: 1   LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEV- 59

Query: 414 KSD--------SGE---------------------YRGLLEKC----------------- 427
             D        +GE                     Y   LE                   
Sbjct: 60  -GDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDED 118

Query: 428 ----AATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGV 483
               A T+L+SK+  ++     K+VVDAV+ + +   +  IG+ K+ GG+LEDS L++G+
Sbjct: 119 LLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSELIEGI 178

Query: 484 SFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKIL 543
              K +        PK  +NPKI LL+  LE +          + +E     ++AE K L
Sbjct: 179 VLDKGYLS---PDMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERL---LEAEEKQL 232

Query: 544 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA 603
              L+KI  +G  +V+ +  I D+A  + A   +    RV +EDL+R  KA G  V+++ 
Sbjct: 233 LPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSL 292

Query: 604 HDLNDSVLGTCAVFDERQIGSERDTL 629
            DL    LG+    +ER+IG ++ T 
Sbjct: 293 DDLEPDELGSAGKVEEREIGEDKTTF 318

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score =  204 bits (522), Expect = 1e-58
 Identities = 122/356 (34%), Positives = 192/356 (53%), Gaps = 60/356 (16%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           + +LKEGT+ ++G+    +NI A +AV +AV++TLGPRGMDK++VD  G  TI+NDGATI
Sbjct: 2   VFILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATI 61

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
           +K +DI HPAAK LV++AK+QD E                                    
Sbjct: 62  LKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGY 121

Query: 412 -------------IQKSDSGEYRGLLEKCAATALSSKLIHQQ-KGFFSKMVVDAVMSLDD 457
                        I    S E R LL+K A T+L+SK   +  K   + +VV+AV  + +
Sbjct: 122 RKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAE 181

Query: 458 L-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
           L       + L+ I I K  GG+++D+ LV+G+   K   + G    PK  +N KIALL+
Sbjct: 182 LRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVVHPGM---PKRVENAKIALLD 238

Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
             LE++    +AEIR+   ++ QK +D E  +L E +DKI  +GA VV+ +  I DVA  
Sbjct: 239 APLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQH 298

Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           Y A   +    RV + D+++  +A G  ++++  ++ +S LG   + +ER++G ++
Sbjct: 299 YLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDK 354

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score =  183 bits (468), Expect = 6e-51
 Identities = 94/354 (26%), Positives = 151/354 (42%), Gaps = 67/354 (18%)

Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
             G E   G+    SNI A +A+ DAV+TTLGP+G +K++VD  G  TI+NDG TI+K +
Sbjct: 1   MMGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEI 60

Query: 392 DIVHP-----------------------------------------------------AA 398
           ++ HP                                                     A 
Sbjct: 61  ELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAV 120

Query: 399 KTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-DD 457
           +  V+  K     +  S+         K A T+++SK  +  +    ++VV+AV  +  +
Sbjct: 121 EKAVEELKEIAKPVSDSE------EELKIAITSVASKSANSDE-EIGELVVEAVEKVGKE 173

Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
              L+ I I K +GG+  +  +V+G+ F K +  + + M  K  +NPKI LL+ +LE+K 
Sbjct: 174 QSDLDGIIIVKESGGSETELEVVEGMVFDKGYL-SPYFMPDKRLENPKILLLDKKLEIKK 232

Query: 518 ERDNAEIRLDSVEEYQKVVDAEWK-ILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADR 575
                EI + S +    + + E    L   +  I   GA  VV+    I D+A  Y  D 
Sbjct: 233 PELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI 292

Query: 576 DMFCAGRVPEEDLKRTM-KACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSER 626
            +    RV +EDL   + K  G  +++   DL   VLG     + +E + G   
Sbjct: 293 AILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYD 346

Length = 524

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score =  180 bits (458), Expect = 1e-49
 Identities = 63/83 (75%), Positives = 74/83 (89%)

Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           GFE QPK +KNPKI LLN+ELELKAE+DNAE+R++  EEYQ +VDAEWKI+Y+KL+KI  
Sbjct: 220 GFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVK 279

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           SGA VVLSKLPIGD+ATQYFADR
Sbjct: 280 SGANVVLSKLPIGDLATQYFADR 302

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score =  167 bits (426), Expect = 2e-45
 Identities = 56/138 (40%), Positives = 81/138 (58%)

Query: 74  QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA 133
            VV+++  I D A  Y A   +    RV +EDL+R  KA G  +++   DL    LGT  
Sbjct: 230 YVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAG 289

Query: 134 VFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV 193
           + +E +IG E++    GCK  +  TI++RG  E  L+E ERSLHDA+  VR  + +  +V
Sbjct: 290 LVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIV 349

Query: 194 AGGGAIEMELSKALRDYS 211
            GGGA E+ELSKAL + +
Sbjct: 350 PGGGAAEIELSKALEELA 367

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score =  161 bits (410), Expect = 6e-43
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           GFE QPK + NPKI LLN+ELELKAE+DNAEIR++ VE+YQ +VDAEW I++EKL KI  
Sbjct: 222 GFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVE 281

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           SGA +VLSKLPIGD+ATQYFAD 
Sbjct: 282 SGANIVLSKLPIGDLATQYFADH 304

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score =  159 bits (403), Expect = 5e-42
 Identities = 106/359 (29%), Positives = 170/359 (47%), Gaps = 64/359 (17%)

Query: 326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIV-----DQNGKSTI 380
           PQ+L  K+G +  +G+   + +     AV D V+TTLGP+GMDK++       ++G  T+
Sbjct: 8   PQVL--KQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTV 65

Query: 381 SNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---------------------------- 412
           +NDGATI+K + + +PAAK LVDI+K+QD E+                            
Sbjct: 66  TNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHP 125

Query: 413 ------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMV 448
                                     SD  +++  L   A T LSSKL+  +K  F+K+ 
Sbjct: 126 QTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLA 185

Query: 449 VDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIAL 508
           VDAV+ L     L+ I I K  GG L DS L DG   +K         QPK  +N KI +
Sbjct: 186 VDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG----QPKRLENCKILV 241

Query: 509 LNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV 567
            N  ++  K +   A++++DS+E+  ++  AE + +  K+DKI A G  V +++  I + 
Sbjct: 242 ANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNY 301

Query: 568 ATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
             Q FA+  +        + ++R   A G  +++T        LG C + +E  IG ++
Sbjct: 302 PEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDK 360

Length = 533

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score =  158 bits (401), Expect = 6e-42
 Identities = 61/176 (34%), Positives = 104/176 (59%)

Query: 36  KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 95
            +K E+      +E +++++AE K L   L+KI  +G  +V+ +  I D+A  + A   +
Sbjct: 207 YEKTEKVIISTAEELERLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGI 266

Query: 96  FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNAR 155
               RV +EDL+R  KA G  V+++  DL    LG+    +ER+IG ++     GC + +
Sbjct: 267 LALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEEREIGEDKTTFIEGCLSGK 326

Query: 156 TCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
             TI++RG  +  L+E ER++ DA+  V+  +++  VV GGGA E+ELS+ALR+Y+
Sbjct: 327 VATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAAELELSRALREYA 382

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score =  158 bits (402), Expect = 8e-42
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 58/337 (17%)

Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA 405
           S+I A ++V + +RT+LGPRGMDK++V  +G+ T++NDGATI++ +D+ H  AK LV+++
Sbjct: 27  SHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELS 86

Query: 406 KSQDAEI---------------------------------------------------QK 414
           KSQD EI                                                   + 
Sbjct: 87  KSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKI 146

Query: 415 SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL----LPLNMIGIKKVA 470
             S + +  L + A T+L SK++ +    F+++ VDAV+S+ DL    +   +I ++   
Sbjct: 147 EFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKV 206

Query: 471 GGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVE 530
           GG LED+ LV G+   K F++      PK  K+ KIA+L    E    +   ++ + SVE
Sbjct: 207 GGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVE 263

Query: 531 EYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR 590
           +Y+K+ + E K   E ++++  +GA +V+ +    D A        +     V   +++ 
Sbjct: 264 DYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL 323

Query: 591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERD 627
              A GG ++    DL+   LG   +  E   G+ +D
Sbjct: 324 IAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKD 360

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score =  150 bits (381), Expect = 4e-39
 Identities = 103/351 (29%), Positives = 165/351 (47%), Gaps = 59/351 (16%)

Query: 331 LKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLI--VDQNGKSTISNDGATIM 388
           LK+G +  +G+   +S+     A+ D V+TTLGP+GMDK++  V ++G  T++NDGATI+
Sbjct: 2   LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATIL 61

Query: 389 KLLDIVHPAAKTLVDIAKSQDAEI------------------------------------ 412
           K + + +PAAK LVDI+K QD E+                                    
Sbjct: 62  KSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYR 121

Query: 413 ----------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
                             SD   +R  L   A T LSSK++ Q K  F+++ VDAV+ L 
Sbjct: 122 MATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLK 181

Query: 457 DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL- 515
               L+ I I K  GG+L+DS L +G    K         QPK  +N KI + N  ++  
Sbjct: 182 GSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDTD 237

Query: 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 575
           K +   A++R+DS  +  ++ +AE + +  K++KI   G    +++  I +   Q FAD 
Sbjct: 238 KIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA 297

Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            +        + ++R     GG + +T        LGTC + +E  IG ++
Sbjct: 298 GIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDK 348

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score =  139 bits (353), Expect = 6e-38
 Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 48/211 (22%)

Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL---LPLNMIGIKKVAGGALEDS 477
           R LL + A T+L+SKL      F  K+VVDAV+ +        L +I ++K+ GG+LEDS
Sbjct: 1   RELLLQVATTSLNSKLSSWDD-FLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS 59

Query: 478 LLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVD 537
            LV GV F K +A       PK  +N KI LL+  LE                       
Sbjct: 60  ELVVGVVFDKGYASPYM---PKRLENAKILLLDCPLE----------------------- 93

Query: 538 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597
                              VV+++  I D+A  Y A   +    RV +EDL+R  +A G 
Sbjct: 94  ------------------YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGA 135

Query: 598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
            ++++  DL    LGT  + +E +IG E+ T
Sbjct: 136 TIVSSLEDLTPEDLGTAELVEETKIGEEKLT 166

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score =  141 bits (358), Expect = 6e-36
 Identities = 97/361 (26%), Positives = 171/361 (47%), Gaps = 59/361 (16%)

Query: 323 FRQPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTIS 381
           + +P I++  +  +    G     SNI A ++V   +RT+LGP+GMDK+++  +G  T++
Sbjct: 7   YGRPFIIIKDQDNKKRLKGLEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVT 66

Query: 382 NDGATIMKLLDIVHPAAKTLVDIAKSQDAE----------------------IQK----- 414
           NDGATI+  +D+ +P AK +V+++KSQD E                      + K     
Sbjct: 67  NDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGIHPI 126

Query: 415 ------------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
                                   S     R  L + A T+L SK++ +    F+++ VD
Sbjct: 127 KIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFAEIAVD 186

Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKI 506
           AV+++ D+    +  ++I ++   GG+LED+ L+ G+   K F++   +M PK  K+ KI
Sbjct: 187 AVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHP--QM-PKEVKDAKI 243

Query: 507 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGD 566
           A+L    E    +   ++ + SVEEY+K+   E +   E +D I  SGA +V+ +    D
Sbjct: 244 AILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDD 303

Query: 567 VATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            A       D+     V  ++L+    A GG ++    +L+   LG   +  E   G+ +
Sbjct: 304 EANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTK 363

Query: 627 D 627
           D
Sbjct: 364 D 364

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score =  140 bits (355), Expect = 1e-35
 Identities = 62/164 (37%), Positives = 98/164 (59%)

Query: 47  PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
           PD+ Q  ++ E  +L E +DKI  +GA VV  +  I D+A  Y A   +    RV + D+
Sbjct: 254 PDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDM 313

Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAE 166
           ++  +A G  ++T   DL    LG   + +ER++G ++     GCKN +  TI++RGG E
Sbjct: 314 EKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTE 373

Query: 167 QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
             ++E ER+L DA+ +V   + +  VVAGGGA+E+EL+K LR+Y
Sbjct: 374 HVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREY 417

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score =  131 bits (333), Expect = 3e-35
 Identities = 42/116 (36%), Positives = 65/116 (56%)

Query: 74  QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA 133
            VV+++  I D+A  Y A   +    RV +EDL+R  +A G  ++++  DL    LGT  
Sbjct: 94  YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAE 153

Query: 134 VFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189
           + +E +IG E+     GCK  +  TI++RG  E  L+E +RSLHDA+  VR  +  
Sbjct: 154 LVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score =  139 bits (352), Expect = 4e-35
 Identities = 62/167 (37%), Positives = 103/167 (61%)

Query: 45  EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
            +PD+ QK +D E  +L E +DKI  +GA VV+ +  I DVA  Y A   +    RV + 
Sbjct: 255 TDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKKS 314

Query: 105 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGG 164
           D+++  +A G  ++++  ++ +S LG   + +ER++G ++     GCKN +  TI++RGG
Sbjct: 315 DIEKLARATGARIVSSIDEITESDLGYAGLVEERKVGEDKMVFVEGCKNPKAVTILLRGG 374

Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
            E  ++E ERSL DA+ +V   + +  VVAGGGA+E+E++  LR Y+
Sbjct: 375 TEHVVDELERSLQDALHVVASALEDGKVVAGGGAVEIEIALRLRSYA 421

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score =  138 bits (350), Expect = 5e-35
 Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 71/348 (20%)

Query: 337 NSQGKPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
             + KPQ +  SNI A +AV DA+RT+LGP+GMDK+I D  G+  I+NDGATI+K + ++
Sbjct: 2   QDKDKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVL 61

Query: 395 HPAAKTLVDIAKSQDAE----------IQKSDSGEYRGLLEK------------------ 426
           HPAAK LV+++K+QD E          +  +  G    LL K                  
Sbjct: 62  HPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACERLLNKGIHPTIISESFQSAADEA 121

Query: 427 ---------------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----LP 460
                                 A T+LSSK++ Q     + + VDAV+ + D      + 
Sbjct: 122 IKILDEMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENAKNVD 181

Query: 461 LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAER 519
           LN I + K  GG ++D+ L++G+ F +  + +     P   +  KI L+  ++   K + 
Sbjct: 182 LNDIKVVKKLGGTIDDTELIEGLVFTQKASKS--AGGPTRIEKAKIGLIQFQISPPKTDM 239

Query: 520 DNAEIRLDSVEEYQ---KVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQY 571
           +N  I    V +Y    +V+  E   +   + KI  +G  V+L +  I      D+A  +
Sbjct: 240 ENQII----VNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
            A   +     +  E+++   K  G   + +        LG+  + +E
Sbjct: 296 LAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEE 343

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score =  138 bits (349), Expect = 1e-34
 Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 45  EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
            +P++ +K+   E  I  E++ KI A+GA VVL+   I D+  +YF +       RV +E
Sbjct: 247 TDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKE 306

Query: 105 DLKRTMKACGGAVMTTAHDLN------DSVLGTCAVFDERQIGSERFNVFSGCKNARTCT 158
           DL+R  KA G  +++T  +L        S LG      + +IG +   +  G K   + +
Sbjct: 307 DLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSAS 366

Query: 159 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           II+RG  +  L+E ERSLHDA+ +V+RT+ +++VV GGGA+E  LS  L +++
Sbjct: 367 IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFA 419

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score =  134 bits (340), Expect = 1e-33
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 7/174 (4%)

Query: 45  EEPDEYQKVVDAEWK-ILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADRDMFCAGRVP 102
                   + + E    L   +  I   GA  VV+    I D+A  Y  D  +    RV 
Sbjct: 242 SSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVK 301

Query: 103 EEDLKRTM-KACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSERFNVFSGCKN--ARTC 157
           +EDL   + K  G  +++   DL   VLG     + +E + G          K       
Sbjct: 302 KEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVA 361

Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           TI+VRG  E  L+E ER + DA+ +VR  +    +V GGGA E+E +  LR+Y+
Sbjct: 362 TILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYA 415

Length = 524

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score =  129 bits (326), Expect = 7e-32
 Identities = 83/272 (30%), Positives = 121/272 (44%), Gaps = 64/272 (23%)

Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP--------- 396
           SNI A +AV DA+RT+LGPRGMDK+I    G+  I+NDGATI+K + ++HP         
Sbjct: 12  SNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELS 71

Query: 397 -----------------------AAKTLVD-------------IAKSQDAEIQKSDSGEY 420
                                  A ++L+              IA  +  EI  S S   
Sbjct: 72  KAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPV 131

Query: 421 ----RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----LPLNMIGIKKVAG 471
               R  L K A T+L+SK++ Q     + + VDAV+ + D      + L  I I K  G
Sbjct: 132 DLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLG 191

Query: 472 GALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE-LKAERDNAEIRLDSVE 530
           G +ED+ LVDG+ F +  +       P   +  KI L+   L   K + DN  +    V 
Sbjct: 192 GTIEDTELVDGLVFTQKASKKA--GGPTRIEKAKIGLIQFCLSPPKTDMDNNIV----VN 245

Query: 531 EYQ---KVVDAEWKILYEKLDKIHASGAQVVL 559
           +Y    +++  E K +     KI  SG  V+L
Sbjct: 246 DYAQMDRILREERKYILNMCKKIKKSGCNVLL 277

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score =  127 bits (322), Expect = 3e-31
 Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 61/356 (17%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           +L+L + T+   G+   +SNI A +AV D +RTTLGPR M K+++D  G   ++NDG  I
Sbjct: 2   VLVLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAI 61

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE---------------------Y 420
           ++ +D+ HPAAK++++++++QD E+          +GE                     Y
Sbjct: 62  LREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAY 121

Query: 421 RGLLE----------------------KCAATALSSKLIHQQKGFFSKMVVDAV--MSLD 456
           +  L+                      K   + + +K + +       + +DAV  +  D
Sbjct: 122 KKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRD 181

Query: 457 DLLPLNMIGIK------KVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
                  I IK      K+ GG +EDS ++ GV   K   +   +M+ +  +NP+I LL+
Sbjct: 182 LGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP--KMR-RYIENPRIVLLD 238

Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
             LE K       + +   E++ +++  E + +    + I A    +V+++  + D+A  
Sbjct: 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQH 298

Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSE 625
           Y    ++    RV + D  R  +ACG  ++    +L +S +GT C +F+ ++IG E
Sbjct: 299 YLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDE 354

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score =  127 bits (321), Expect = 4e-31
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 45  EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
           ++P + +++   E  I  E++ KI  +GA VVL+   I D+  +YF +       R  +E
Sbjct: 251 DDPAKLEQIRQREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKE 310

Query: 105 DLKRTMKACGGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCT 158
           DLKR  KA GG +++T  DL      + S LG      + +I  +   +  G K   + +
Sbjct: 311 DLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVQERIADDECILIKGTKKRSSAS 370

Query: 159 IIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           II+RG  +  L+E ERSLHDA+ +V+RT+ +++VV GGGA+E  LS  L +++
Sbjct: 371 IILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALSIYLENFA 423

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score =  126 bits (318), Expect = 7e-31
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 58/351 (16%)

Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKS-TISNDGATIM 388
           + K+     + +   +S+     AV D V++TLGP+GMDK++   +  +  ++NDGATI+
Sbjct: 2   IFKDQATEERAENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSASSNTIMVTNDGATIL 61

Query: 389 KLLDIVHPAAKTLVDIAKSQD--------------AEIQK-------------------- 414
           K + + +PAAK LV+I+K QD              AE+ +                    
Sbjct: 62  KSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKIHPQTIIEGYR 121

Query: 415 ------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
                             SD  ++R  L   A T LSSK++ Q K  F+++ VDAV+ L 
Sbjct: 122 LATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFAQLAVDAVLRLK 181

Query: 457 DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL- 515
               L  I I K+ GG L DS L +G    K         QPK  +N KI + N  ++  
Sbjct: 182 GSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGV----NQPKRIENAKILIANTTMDTD 237

Query: 516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR 575
           K +   + +R+DS  +  ++  AE + + EK++KI   G    +++  I +   Q FAD 
Sbjct: 238 KVKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADA 297

Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            +        E ++R     GG +++T        LG+C + +E  IG ++
Sbjct: 298 GIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDK 348

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score =  120 bits (302), Expect = 1e-28
 Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 16/213 (7%)

Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDLLPLNMIGIKKVAGGALED 476
           L   A T++SSK+I     FF+ MVVDA++++           P+  + I K  G + ++
Sbjct: 140 LINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKE 199

Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
           S LV+G +   T A  G    P   KN KIA L+  L+    +   ++ +   E+ +K+ 
Sbjct: 200 SYLVNGYALNCTRASQGM---PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIR 256

Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596
             E  I  E++ KI A+GA VVL+   I D+  +YF +       RV +EDL+R  KA G
Sbjct: 257 QRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATG 316

Query: 597 GAVMTTAHDLN------DSVLGTCAVFDERQIG 623
             +++T  +L        S LG      + +IG
Sbjct: 317 ATLVSTLANLEGEETFDPSYLGEAEEVVQERIG 349

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score =  117 bits (295), Expect = 5e-28
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 106/359 (29%)

Query: 327 QILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGAT 386
            +L+L + T+   G+   + NI A + V D +RT LGPR M K+++D  G   ++NDG  
Sbjct: 1   PVLVLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNA 60

Query: 387 IMKLLDIVHPAAKTLVDIAKSQDAEIQKSD--------SGE------------------- 419
           I++ +D+ HPAAK++++++++QD E+   D        +GE                   
Sbjct: 61  ILREIDVAHPAAKSMIELSRTQDEEV--GDGTTSVIILAGEILAVAEPFLERGIHPTVII 118

Query: 420 --YRGLLE----------------------KCAATALSSKLIHQQKGFFSKMVVDAVM-- 453
             YR  LE                      K   + + +K + +       + +DAV   
Sbjct: 119 KAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTV 178

Query: 454 SLDDLLPLNMIGIK------KVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIA 507
           ++++      I IK      K+ GG +EDS ++DGV   K   +    M+ +  +NP+I 
Sbjct: 179 AVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK--MR-RRIENPRIV 235

Query: 508 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV 567
           L                 LD   EY                        +V+++  + D+
Sbjct: 236 L-----------------LDCPLEY------------------------LVITEKGVSDL 254

Query: 568 ATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
           A  Y     +    RV + D  R  +ACG  ++    +L +S +GT A +F+ ++IG E
Sbjct: 255 AQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDE 313

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score =  114 bits (286), Expect = 1e-26
 Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDLLPLNMIGIKKVAGGALED 476
           L   A T++SSK+I     FFS +VVDAV+++       +   P+  + I K  G +  +
Sbjct: 144 LINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKSARE 203

Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
           S LV G +   T A       PK  K  KIA L+  L+        +I +D   + +++ 
Sbjct: 204 SYLVKGYALNCTRASQQM---PKRIKKAKIACLDFNLQKAKMALGVQIVVDDPAKLEQIR 260

Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG 596
             E  I  E++ KI  +GA VVL+   I D+  +YF +       R  +EDLKR  KA G
Sbjct: 261 QREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATG 320

Query: 597 GAVMTTAHDL------NDSVLGTCAVFDERQIGSE 625
           G +++T  DL      + S LG      + +I  +
Sbjct: 321 GTLVSTLADLEGEETFDASYLGFADEVVQERIADD 355

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score =  106 bits (267), Expect = 3e-24
 Identities = 50/159 (31%), Positives = 86/159 (54%)

Query: 48  DEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 107
           ++  ++  AE + +  K+DKI A G  V +++  I +   Q FA+  +        + ++
Sbjct: 264 EKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGME 323

Query: 108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ 167
           R   A G  +++T        LG C + +E  IG ++   FSGC     CTI++RG +  
Sbjct: 324 RLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTH 383

Query: 168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
            L+E ERSLHDA+ ++ +T+++  VV GGG  EM ++ A
Sbjct: 384 ILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANA 422

Length = 533

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score =  102 bits (255), Expect = 7e-23
 Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 7/177 (3%)

Query: 66  DKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLN 125
           + I A    +V+++  + D+A  Y    ++    RV + D  R  +ACG  ++    +L 
Sbjct: 276 EDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELR 335

Query: 126 DSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVR 184
           +S +GT C +F+ ++IG E F  F+ CK+ + CTI++RG ++  L E ER+L DA+ + R
Sbjct: 336 ESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVAR 395

Query: 185 RTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
             +    ++ GGGA EM +S  L   +   + V+        + A++ D  E+ P+T
Sbjct: 396 NVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQW-----PYRAVA-DALEIIPRT 446

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score =  101 bits (254), Expect = 8e-23
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 82  IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQI 140
           + D+A  Y     +    RV + D  R  +ACG  ++    +L +S +GT A +F+ ++I
Sbjct: 251 VSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKI 310

Query: 141 GSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIE 200
           G E F   + CK+ + CTI++RG ++  L E ER+L DA+ + R  I N  +V GGGA E
Sbjct: 311 GDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE 370

Query: 201 MELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
           M +S AL + +   + V         + A++    E+ P+T
Sbjct: 371 MAVSHALSEKAKSIEGVEQW-----PYKAVA-SALEVIPRT 405

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score =  101 bits (254), Expect = 1e-22
 Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 68/359 (18%)

Query: 330 LLKEGTENSQG-KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIM 388
           LLKEG  +  G +  +I NI AC+ +    RT+LGP GM+K++++   K  ++ND ATI+
Sbjct: 5   LLKEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATIL 64

Query: 389 KLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQ-------K 441
           + L++ HPAAK LV  ++ Q+ EI   D      +L        + +LI          K
Sbjct: 65  RELEVQHPAAKLLVMASEMQENEI--GDGTNLVIVL-AGELLNKAEELIRMGLHPSEIIK 121

Query: 442 GF----------FSKMVVDAVMSLDD---------------------------------L 458
           G+            ++VV  +  L D                                 +
Sbjct: 122 GYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYGNEDFLSQLVAKACSTV 181

Query: 459 LPLNM-------IGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           LP N        I + K+ GG+L +S ++ G+ F +       E   K  K  K+A+ + 
Sbjct: 182 LPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNRE-----AEGSVKRVKKAKVAVFSC 236

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            L+         + + + EE       E   +   +  I  SG  V+++   +GD+A  +
Sbjct: 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMA-LH 295

Query: 572 FADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           + +R      ++P + +L+R  K  G   +          LG        +IG ++ T+
Sbjct: 296 YLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTV 354

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score =  100 bits (251), Expect = 3e-22
 Identities = 50/161 (31%), Positives = 88/161 (54%)

Query: 51  QKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM 110
            ++ +AE + +  K++KI   G    +++  I +   Q FAD  +        + ++R  
Sbjct: 255 AEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLA 314

Query: 111 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLE 170
              GG + +T        LGTC + +E  IG ++   FSG      CTI++RG ++Q L+
Sbjct: 315 LVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILD 374

Query: 171 ETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           E ERSLHDA+ ++ +T+++  VV GGG  EM ++KA+ + +
Sbjct: 375 EAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELA 415

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 52/152 (34%), Positives = 83/152 (54%)

Query: 56  AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 115
           AE + + EK++KI   G    +++  I +   Q FAD  +        E ++R     GG
Sbjct: 260 AEREKMKEKVEKILKHGINCFINRQLIYNYPEQLFADAGIMSIEHADFEGVERLALVTGG 319

Query: 116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERS 175
            +++T        LG+C + +E  IG ++   FSG K    CTI++RG  +Q L+E ERS
Sbjct: 320 EIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERS 379

Query: 176 LHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
           LHDA+ ++ +T++    V GGG  EM +SKA+
Sbjct: 380 LHDALCVLSQTVKESRTVLGGGCAEMLMSKAV 411

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 47  PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
            +EY+K+   E +   E +D I  SGA +V+ +    D A       D+     V  ++L
Sbjct: 266 VEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGQEL 325

Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGG 164
           +    A GG ++    +L+   LG   +  E   G+  +R  V   CKN++  TI +RGG
Sbjct: 326 ELIAIATGGRIVPRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGG 385

Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKAL 207
            +  +EE +RS+HDA+ +VR  I++  +V GGGA E+  S A+
Sbjct: 386 NKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLAV 428

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 93.9 bits (234), Expect = 4e-20
 Identities = 37/77 (48%), Positives = 56/77 (72%)

Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
           E + G+     N+ A  A+ + V+++LGP G+DK++VD  G  TI+NDGATI+KLL++ H
Sbjct: 2   ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 61

Query: 396 PAAKTLVDIAKSQDAEI 412
           PAAK LV++A+ QD E+
Sbjct: 62  PAAKILVELAQLQDKEV 78

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 40/79 (50%), Positives = 57/79 (72%)

Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
           G E + G+     N+ A  AV + V+T+LGP G+DK++VD  G  TI+NDGATI+KLL++
Sbjct: 4   GGERTSGQDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV 63

Query: 394 VHPAAKTLVDIAKSQDAEI 412
            HPAAK LV++A+ QD E+
Sbjct: 64  EHPAAKILVELAQLQDREV 82

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 88.9 bits (221), Expect = 2e-18
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 47  PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
            ++Y+K+ + E K   E ++++  +GA +V+ +    D A        +     V   ++
Sbjct: 262 VEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321

Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGG 164
           +    A GG ++    DL+   LG   +  E   G+  ++  V  GC N++  TI +RGG
Sbjct: 322 ELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGG 381

Query: 165 AEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRT 219
            +  +EE +RSLHDA+ +VR  IR++ +V GGGA E+  S A+   +   DK   
Sbjct: 382 NKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAA---DKCSG 433

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 86.1 bits (214), Expect = 9e-18
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 342 PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTL 401
             ++ NI AC+ +    RT+ GP GM+K++++   K  +++D ATI++ L++ HPAAK L
Sbjct: 8   EAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLL 67

Query: 402 VDIAKSQDAEI 412
           V  ++ Q+ EI
Sbjct: 68  VMASQMQEEEI 78

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 80.8 bits (200), Expect = 5e-16
 Identities = 33/112 (29%), Positives = 60/112 (53%)

Query: 100 RVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTI 159
           R    +++R   ACGG  M +  DL+   LG   +  ER +G E++    G KN ++CTI
Sbjct: 273 RAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTI 332

Query: 160 IVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           +++G  +  + + + ++ D +  V+  I +  VV G GA E+ L   L+++ 
Sbjct: 333 LIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFK 384

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 52  KVVDAEWKILYEKLDKIHASGAQVVL---SKL--PIGDVATQYFADRDMFCAGRVPEEDL 106
           +++  E K +     KI  SG  V+L   S L   + D+A  + A   +     +  E++
Sbjct: 252 RILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEI 311

Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-RTCTIIVRGGA 165
           +   K  G   + +     +  LG+  + +E  +G  +    +G KN  +T TI+VRG  
Sbjct: 312 EFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSN 371

Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           +  L+E ERSLHDA+ ++R  ++  A++ GGGA E+E++  L +++
Sbjct: 372 KLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWA 417

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 72  GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLG 130
           G  V+++   +GD+A  ++ ++      ++  + +L+R  +  G   +          +G
Sbjct: 231 GVNVIVAGGSVGDLA-LHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIG 289

Query: 131 TCAVFDERQIGSERFNVFSGCKNA-RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN 189
            C      +IG  +  VF   K   +  TI++RG  +  L++ ER++ D + + +   ++
Sbjct: 290 YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKD 349

Query: 190 HAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT 241
              V G GA E+EL+K L++Y       +T      +    + + FE+ P+T
Sbjct: 350 GRFVPGAGATEIELAKKLKEYGE-----KTPGLEQYAIKKFA-EAFEVVPRT 395

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 52  KVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDL 106
           +V+  E   +   + KI  +G  V+L +  I      D+A  + A   +     +  E++
Sbjct: 253 RVLKEERAYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEI 312

Query: 107 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNAR-TCTIIVRGGA 165
           +   K  G   + +        LG+  + +E      +    +G +NA  T T++VRG  
Sbjct: 313 EFICKTIGCKPIASIDHFTADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTVVVRGSN 372

Query: 166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           +  ++E ERSLHDA+ ++R  ++   ++AGGGA E+E+++ L  Y+
Sbjct: 373 KLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIARRLSKYA 418

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score = 77.1 bits (190), Expect = 9e-15
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 45  EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE 104
           EE   Y K    E   +   +  I  SG  V+++   +GD+A  ++ +R      ++P +
Sbjct: 255 EELLNYSK---GEENQIEAMIKAIADSGVNVIVTGGSVGDMA-LHYLNRYGIMVLKIPSK 310

Query: 105 -DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVF-SGCKNARTCTIIVR 162
            +L+R  K  G   +          LG        +IG ++  VF     ++R  TII+R
Sbjct: 311 FELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILR 370

Query: 163 GGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           G  +  L++ ER++ D + +V+  +++   + G GA E+EL+  L  Y+
Sbjct: 371 GSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKYA 419

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 83/364 (22%), Positives = 145/364 (39%), Gaps = 66/364 (18%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           + LL    E+ +    L+ NINA + + D ++T LGP+G  K++V   G   ++ DG  +
Sbjct: 2   VQLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVL 61

Query: 388 MKLLDIVHPAAKTLVDIAKSQDA------------------------------------- 410
           +  + I HP A  +   A +QD                                      
Sbjct: 62  LNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEGF 121

Query: 411 EIQKSDSGEY-------------RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-- 455
           EI + +  E+             R  L   A T+L +KL        +++VVDAV+++  
Sbjct: 122 EIARKELLEFLDKFKVKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKK 181

Query: 456 -DDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
             + + L M+ I ++   +  D+ L+ G+       +      P+  KN  I   N+ LE
Sbjct: 182 DGEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNVSLE 238

Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 564
            +    N+     S E+ +K+V AE K + +++ KI                VV+++  I
Sbjct: 239 YEKTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI 298

Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 624
              +    A   +    R    +++R   ACGG  + +  DL    LG   +  E  IG 
Sbjct: 299 DPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGE 358

Query: 625 ERDT 628
           E+ T
Sbjct: 359 EKYT 362

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 30/111 (27%), Positives = 56/111 (50%)

Query: 100 RVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTI 159
           R    +++R   ACGG  + +  DL    LG   +  E  IG E++      KN ++CTI
Sbjct: 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGEEKYTFIEEVKNPKSCTI 375

Query: 160 IVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
           +++G  +  + + + ++ D +  V+  I +  VV G GA E+   + L++ 
Sbjct: 376 LIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYRHLKEN 426

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 447 MVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKI 506
            V   V + DD+     + IKK+ GG+  DS +VDGV F K  A+    M P   KNP+I
Sbjct: 33  NVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR--M-PSKIKNPRI 89

Query: 507 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL--DKIHASGAQVVLSKLPI 564
            LL   LE     +N  + LD V   +K         Y K    +I A    V+L +  +
Sbjct: 90  LLLQGPLEY-QRVENKLLSLDPVILQEKE--------YLKNLVSRIVALRPDVILVEKSV 140

Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDS-VLGTCAVFDERQIG 623
             +A     +  +     V    L+R  +  G  ++++  DL  S  LGTC  F  R   
Sbjct: 141 SRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYV 200

Query: 624 SE 625
            E
Sbjct: 201 EE 202

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
           PK  +N KIALL+  LE+K    +A+IR+ S ++ Q  ++ E  +L E +DKI  +GA V
Sbjct: 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282

Query: 299 VLSKLPIGDVATQYFADR 316
           V  +  I D+A  Y A  
Sbjct: 283 VFCQKGIDDLAQHYLAKA 300

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 74/336 (22%), Positives = 133/336 (39%), Gaps = 87/336 (25%)

Query: 347 NINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAK 406
           NI+A + + D ++T LGP+G  K++V   G   ++ DG  ++  + I HP A  +   A 
Sbjct: 17  NISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAAT 76

Query: 407 SQDA-------------------------------------EIQKSDSGEY--------- 420
           +QD                                      E+ K+ + ++         
Sbjct: 77  AQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVE 136

Query: 421 ----RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLNMIGIKKVAGGA 473
               R LL   A T+L +KL        +++VVDAV+++   D+ + L+M+ I ++   +
Sbjct: 137 IDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKS 196

Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
             D+ L+ G+       +   +M PK  +N  I   N+ LE                   
Sbjct: 197 DSDTKLIRGLVLDHGARHP--DM-PKRVENAYILTCNVSLE------------------- 234

Query: 534 KVVDAEWKILYEKLDKIHASGA-QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM 592
                     YEK  ++++     VV+++  I   +    A   +    R    +++R  
Sbjct: 235 ----------YEK-TEVNSGFFYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLT 283

Query: 593 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDT 628
            ACGG  M +  DL+   LG   +  ER +G E+ T
Sbjct: 284 LACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYT 319

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 33/78 (42%), Positives = 47/78 (60%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
           PK  +N KIALL+  LE++    +AEIR+   ++ QK +D E  +L E +DKI  +GA V
Sbjct: 226 PKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADAGANV 285

Query: 299 VLSKLPIGDVATQYFADR 316
           V+ +  I DVA  Y A  
Sbjct: 286 VICQKGIDDVAQHYLAKA 303

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 61.5 bits (150), Expect = 6e-10
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 237 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK-ILYEKLDKIHASG 295
           M  K  +NPKI LL+ +LE+K      EI + S +    + + E    L   +  I   G
Sbjct: 211 MPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGG 270

Query: 296 A-QVVLSKLPIGDVATQYFAD 315
           A  VV+    I D+A  Y  D
Sbjct: 271 ANVVVVKAPGIDDLAKAYLED 291

Length = 524

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK  +NPKI LL+  LE +          + +E     ++AE K L   L+KI  +G  
Sbjct: 189 MPKRLENPKILLLDCPLEYEKTEKVIISTAEELERL---LEAEEKQLLPLLEKIVDAGVN 245

Query: 298 VVLSKLPIGDVATQYFADR 316
           +V+ +  I D+A  + A  
Sbjct: 246 LVIIQKGIDDLALHFLAKN 264

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
           P   KN KIA L+  L+    +   ++ +   E+ +K+   E  I  E++ KI A+GA V
Sbjct: 218 PTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANV 277

Query: 299 VLSKLPIGDVATQYFAD 315
           VL+   I D+  +YF +
Sbjct: 278 VLTTGGIDDMCLKYFVE 294

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGA 73
            E  +KK++++KK+KKKK    KKKEEEEEEE+  + ++  + E +   EK ++      
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Query: 74  QVVLSK 79
           Q  L  
Sbjct: 476 QATLFD 481

Length = 482

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
           PK  K  KIA L+  L+        +I +D   + +++   E  I  E++ KI  +GA V
Sbjct: 222 PKRIKKAKIACLDFNLQKAKMALGVQIVVDDPAKLEQIRQREADITKERIKKILDAGANV 281

Query: 299 VLSKLPIGDVATQYF 313
           VL+   I D+  +YF
Sbjct: 282 VLTTGGIDDMCLKYF 296

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 56/217 (25%)

Query: 424 LEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNM-------IGIKKVAGGALED 476
           + K   TA++SK    +  F S +V +A +S+   LP N+       I + K+ GG+LED
Sbjct: 141 VSKALKTAIASKQYGNED-FLSPLVAEACISV---LPENIGNFNVDNIRVVKILGGSLED 196

Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVV 536
           S +V G+ FK+       E   K  K  K+A+ +   ++                     
Sbjct: 197 SKVVRGMVFKR-----EPEGSVKRVKKAKVAVFSCPFDI--------------------- 230

Query: 537 DAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE-DLKRTMKAC 595
                            G  V+++   +GD+A  ++ ++      ++  + +L+R  +  
Sbjct: 231 -----------------GVNVIVAGGSVGDLA-LHYCNKYGIMVIKINSKFELRRLCRTV 272

Query: 596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE 632
           G   +          +G C      +IG  +  + R+
Sbjct: 273 GATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQ 309

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 49  EYQKV----VDAEWKILYEK------LDKIHASGAQVVLSKLPIGDVATQYFADRDMFCA 98
           EYQ+V    +  +  IL EK      + +I A    V+L +  +  +A     +  +   
Sbjct: 97  EYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156

Query: 99  GRVPEEDLKRTMKACGGAVMTTAHDLNDS-VLGTCAVFDERQIGSER-----FNVFSGCK 152
             V    L+R  +  G  ++++  DL  S  LGTC  F  R    E         F GC 
Sbjct: 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCP 216

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIV 183
               CTI++RGG  + L++ +R +   +   
Sbjct: 217 KELGCTILLRGGDLEELKKVKRVVEFMVFAA 247

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261

>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 351 CQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
              + DAV+ TLGP+G + +I    G   I+ DG T+ K
Sbjct: 17  VNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAK 55

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
          K K KK   KKKKKKKKKK K +EE   E +E +K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEK 45

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVD 55
           EE +K K KKKK KKKK K K KK ++++++ E  + ++  D
Sbjct: 79  EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQ 51
            KKKKKKKKKK K K++   E+EEEE+   E  
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESD 51

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 7  QFRAHFCEELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEP 47
             A   ++   K  +K +KK +K K K +KK+ ++EE +P
Sbjct: 57 SLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query: 17  RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
            KK+ K++KKK+KKKKKKK KK  ++EE+E  +
Sbjct: 84  AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPD 48
          L+ KK   KKKKKKKKKK K K+E   E+EE +
Sbjct: 12 LKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEE 44

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 16  LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKI 68
             KKKK KKKK K K KK  KK ++ E+++E +   K+ D   K   E L  +
Sbjct: 85  KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT-KSYSETLSTL 136

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional

 Score = 41.8 bits (99), Expect = 9e-04
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 348 INACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +   + + DAV  TLGP+G + +I  + G   I+ DG T+ K
Sbjct: 28  LKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAK 69

Length = 555

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 16 LRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
          L+ K KK   KKKKKKKKKK K +EE   E+ +E
Sbjct: 10 LKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEE 43

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 18 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
           KKKKKKKKKK K K++   ++EEEE+   +   K
Sbjct: 19 VKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLK 53

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 19 KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
            KKKKKKKKKK K K++   E+EEEE+      + + E
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGE 56

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 18  KKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIH 69
           KK KKKK K K KK  KK  K E+++E+E ++  + +   +      L ++ 
Sbjct: 89  KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 17  RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
            K++KKK+KKKKKKK KK  KKEE+E  +  +E
Sbjct: 88  AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 17  RKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
           R K++KKK+KKKKKKK KK  K+EE+E  +  E
Sbjct: 87  RAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
           EE   KK+ K++KKK+KKKKKKK K+  ++EE+   
Sbjct: 80  EEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
            + DAV+ TLGP+G + +I    G  TI+ DG +I K
Sbjct: 21  KLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAK 57

Length = 542

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQK 52
           EE ++KKKKK+ KK+KK+KK KK+K  E +  +  + +K
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 19  KKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAE 57
           K+KKKKKKKKK+ +  ++KK++    EE  E QK VDA 
Sbjct: 82  KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120

RPL6 contains KOW motif that has an extra ribosomal role as an oncogenic. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 152

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDE 49
            + +K KKKK K K KK  KK  K E+++E+E  D+
Sbjct: 86  WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 356 DAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
           DAV+ TLGP+G + +I    G  TI+NDG TI K +++
Sbjct: 25  DAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIEL 62

Length = 541

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 13/30 (43%), Positives = 25/30 (83%)

Query: 17  RKKKKKKKKKKKKKKKKKKKKKEEEEEEEE 46
           +K+++KK +K+KKKKK+KKK K+ +++  +
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)

Query: 17  RKKKKKKK---KKKKKKKKKKKKKKEEEEEEEEP 47
           +K KKKK    K++KKKKK+KKKKK+    E   
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHPG 175

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	632
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
KOG0361|consensus	543		100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	100.0
KOG0358|consensus	534		100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
KOG0362|consensus	537		100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
KOG0363|consensus	527		100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	100.0
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
KOG0360|consensus	545		100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
KOG0364|consensus	527		100.0
KOG0361|consensus	543		100.0
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	100.0
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	100.0
KOG0358|consensus	534		100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
KOG0364|consensus	527		100.0
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	100.0
PRK00013	542	groEL chaperonin GroEL; Reviewed	100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
PRK12849	542	groEL chaperonin GroEL; Reviewed	100.0
PRK12851	541	groEL chaperonin GroEL; Reviewed	100.0
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	100.0
PTZ00114	555	Heat shock protein 60; Provisional	100.0
PRK12850	544	groEL chaperonin GroEL; Reviewed	100.0
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	100.0
PRK12852	545	groEL chaperonin GroEL; Reviewed	100.0
PRK12849	542	groEL chaperonin GroEL; Reviewed	100.0
PRK00013	542	groEL chaperonin GroEL; Reviewed	100.0
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	100.0
PRK12851	541	groEL chaperonin GroEL; Reviewed	100.0
KOG0357|consensus	400		100.0
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	100.0
PRK14104	546	chaperonin GroEL; Provisional	100.0
PRK12850	544	groEL chaperonin GroEL; Reviewed	100.0
KOG0363|consensus	527		100.0
PLN03167	600	Chaperonin-60 beta subunit; Provisional	100.0
KOG0359|consensus	520		100.0
PRK12852	545	groEL chaperonin GroEL; Reviewed	100.0
PTZ00114	555	Heat shock protein 60; Provisional	100.0
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	100.0
CHL00093	529	groEL chaperonin GroEL	100.0
KOG0362|consensus	537		100.0
PRK14104	546	chaperonin GroEL; Provisional	100.0
CHL00093	529	groEL chaperonin GroEL	100.0
PLN03167	600	Chaperonin-60 beta subunit; Provisional	100.0
KOG0360|consensus	545		100.0
KOG0359|consensus	520		100.0
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.98
KOG0356|consensus	550		99.98
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	99.96
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.95
KOG0356|consensus	550		99.94
KOG0357|consensus	400		99.89
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	99.84
KOG0230|consensus	1598		99.66
KOG0230|consensus	1598		99.49

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=4e-55  Score=489.71  Aligned_cols=299  Identities=40%  Similarity=0.634  Sum_probs=282.5

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||
T Consensus         4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd   83 (519)
T TIGR02339         4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD   83 (519)
T ss_pred             cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            46778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccc-c
Q psy17074        410 AEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLI-H  438 (632)
Q Consensus       410 ~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~-~  438 (632)
                      +++                          +                        +++. .+++.|.++|+|+++||+. +
T Consensus        84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~-~~~~~L~~ia~tsl~sk~~~~  162 (519)
T TIGR02339        84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISP-EDRDLLKKVAETSLTGKASAE  162 (519)
T ss_pred             HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCc-ccHHHHHHHHHhhhccccccc
Confidence            999                          0                        1111 2357899999999999999 6


Q ss_pred             chhhHHHHHHHHHHHHhcc-------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074        439 QQKGFFSKMVVDAVMSLDD-------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI  511 (632)
Q Consensus       439 ~~~~~l~~li~~A~~~v~~-------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~  511 (632)
                      .+.++|++|+++|+.++++       .+|+++|+|+++.||+..||++++|++|++++.+++   ||+.++||||+++++
T Consensus       163 ~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIlll~~  239 (519)
T TIGR02339       163 VTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIALLDA  239 (519)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEEEec
Confidence            8999999999999999963       377889999999999999999999999999999984   899999999999999


Q ss_pred             cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074        512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT  591 (632)
Q Consensus       512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI  591 (632)
                      +|++++++.++++.+++++++.+++++|+++++++++.|++.|++||+++++|++.+++||.++||++++++++++|+||
T Consensus       240 ~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rI  319 (519)
T TIGR02339       240 PLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKL  319 (519)
T ss_pred             cccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        592 MKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       592 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++|||+++++++++++++||+|++|+++++|+++|++|+|
T Consensus       320 a~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~  360 (519)
T TIGR02339       320 ARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEG  360 (519)
T ss_pred             HHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEc
Confidence            99999999999999999999999999999999999999975

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=1.6e-54  Score=485.11  Aligned_cols=303  Identities=74%  Similarity=1.109  Sum_probs=287.4

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++++.++|.+++.+|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~   83 (522)
T cd03340           4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD   83 (522)
T ss_pred             cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence            56788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------------------------------ccCCch---hhHHHHHHHHhhhcCCcc
Q psy17074        410 AEI--------------------------------------------------QKSDSG---EYRGLLEKCAATALSSKL  436 (632)
Q Consensus       410 ~~~--------------------------------------------------~~~~~~---~~~~~L~~va~t~l~sK~  436 (632)
                      +++                                                  .+.+..   .+++.|.++|+|+++||+
T Consensus        84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~  163 (522)
T cd03340          84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL  163 (522)
T ss_pred             hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence            999                                                  011110   126679999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        437 IHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       437 ~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      .+.+.++|++++++|+..+++++|.++|+|+++.||+..||++++|++|+++|.+|+|.+||+.++||+|++++++|++.
T Consensus       164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~  243 (522)
T cd03340         164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK  243 (522)
T ss_pred             chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence            99999999999999999998778889999999999999999999999999999999988899999999999999999999


Q ss_pred             hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074        517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  596 (632)
Q Consensus       517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG  596 (632)
                      +++.+.++.++++++++.+.+.|+++++++++.+++.|++||+|+++|+|.+++||.++||++++++++++|+|||++||
T Consensus       244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG  323 (522)
T cd03340         244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG  323 (522)
T ss_pred             ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        597 GAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       597 a~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+++++++++++++||+|++|+++++|+++|++|+|
T Consensus       324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~  359 (522)
T cd03340         324 GSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTG  359 (522)
T ss_pred             CEEeeccccCCccccccceEEEEEEECCEEEEEEEC
Confidence            999999999999999999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=2.8e-54  Score=483.25  Aligned_cols=299  Identities=39%  Similarity=0.621  Sum_probs=282.6

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||
T Consensus         3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~   82 (517)
T cd03343           3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD   82 (517)
T ss_pred             ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence            45777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074        410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +++                                                  .+++. .+++.|.++|+|+++||+.+.
T Consensus        83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-~~~~~l~~va~ts~~sk~~~~  161 (517)
T cd03343          83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDP-DDKDTLRKIAKTSLTGKGAEA  161 (517)
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHHHHHhhcccchhh
Confidence            999                                                  01111 146789999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccc
Q psy17074        440 QKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL  513 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~L  513 (632)
                      +.+.|++++++|+..+++      .+|+++|+|.+++||+++||++++|++|+++|.||+   |++.++||+|++++++|
T Consensus       162 ~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~---m~~~~~n~~Illl~~~L  238 (517)
T cd03343         162 AKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPG---MPKRVENAKIALLDAPL  238 (517)
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCC---CccccCCCcEEEEeccc
Confidence            999999999999999863      467788999999999999999999999999999986   68999999999999999


Q ss_pred             hhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHH
Q psy17074        514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK  593 (632)
Q Consensus       514 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~  593 (632)
                      |+++++.++++.+++++++.++.++|+++++++++.|++.|++|||++++|++.+++||.++||++|+++++++|+|||+
T Consensus       239 e~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~  318 (517)
T cd03343         239 EVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLAR  318 (517)
T ss_pred             cCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        594 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       594 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||+++++++++++++||+|++|+++++|+++|++|+|
T Consensus       319 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~  357 (517)
T cd03343         319 ATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEG  357 (517)
T ss_pred             HhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEc
Confidence            999999999999999999999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=1.5e-53  Score=476.00  Aligned_cols=300  Identities=27%  Similarity=0.429  Sum_probs=281.0

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++.+++.|.+++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++||
T Consensus         4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd   83 (531)
T TIGR02347         4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD   83 (531)
T ss_pred             cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccccc
Q psy17074        410 AEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       410 ~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +++                          +                        +.....+.+.|.++|+|+++||+.+.
T Consensus        84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~  163 (531)
T TIGR02347        84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPID  163 (531)
T ss_pred             hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchh
Confidence            999                          0                        11002356789999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        440 QKGFFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      +.++|++++++|+..+++   .+|+++|++++..||+..||++++|++|++++.+|+   ||+.++||+|++++++|++.
T Consensus       164 ~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~---~~~~~~n~~Ill~~~~le~~  240 (531)
T TIGR02347       164 LADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPD---MPRRVKNAYILTCNVSLEYE  240 (531)
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCC---CceeccCceEEEEeCCCCCC
Confidence            999999999999999974   367788999999999999999999999999999986   68999999999999999999


Q ss_pred             hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEEeCCccHHHHHHHHHCCcEEEecCCch
Q psy17074        517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG-------AQ---VVLSKLPIGDVATQYFADRDMFCAGRVPEE  586 (632)
Q Consensus       517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g-------v~---vvi~~~~I~~~al~~L~~~~I~~v~~v~~~  586 (632)
                      +++..+++.+++++++..+++.|++++++++++|++.|       ++   ||+|+++|++.+++||.++||+++++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~  320 (531)
T TIGR02347       241 KTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRR  320 (531)
T ss_pred             ccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHH
Confidence            99999999999999999999999999999999999976       25   999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        587 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       587 ~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|+|||++|||+++++++++++++||+|++|+++.+|+++|++|+|
T Consensus       321 ~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~  366 (531)
T TIGR02347       321 NMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEE  366 (531)
T ss_pred             HHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEc
Confidence            9999999999999999999999999999999999999999999975

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=1.1e-53  Score=478.10  Aligned_cols=303  Identities=31%  Similarity=0.518  Sum_probs=281.9

Q ss_pred             hhhhccc--CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        327 QILLLKE--GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       327 ~~~~~~~--~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      |..++++  +.+++.|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~   89 (532)
T TIGR02343        10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL   89 (532)
T ss_pred             CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence            3345666  56788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc--------------------------------------------------ccCC-chhhHHHHHHHHhhhcC
Q psy17074        405 AKSQDAEI--------------------------------------------------QKSD-SGEYRGLLEKCAATALS  433 (632)
Q Consensus       405 a~~q~~~~--------------------------------------------------~~~~-~~~~~~~L~~va~t~l~  433 (632)
                      |++||+++                                                  .+.+ ...+++.|.++|+|+++
T Consensus        90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~  169 (532)
T TIGR02343        90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLG  169 (532)
T ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhc
Confidence            99999999                                                  0111 01236789999999999


Q ss_pred             CccccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074        434 SKLIHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL  509 (632)
Q Consensus       434 sK~~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~  509 (632)
                      ||+.+.+.+.|++++++|+..+.+    .+|+++|+|+++.||+++||++++|++|++++.|++   ||+.++||||+++
T Consensus       170 sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~---m~~~~~n~kI~l~  246 (532)
T TIGR02343       170 SKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ---MPKEVKDAKIAIL  246 (532)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCC---CCeeecCCcEEEE
Confidence            998888899999999999999852    578899999999999999999999999999999985   7899999999999


Q ss_pred             cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074        510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK  589 (632)
Q Consensus       510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~  589 (632)
                      +++|++++++.++++.+++++++..+.++|+++++++++.|++.|++||||+++||+.+++||.++||++|+++++++|+
T Consensus       247 ~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~  326 (532)
T TIGR02343       247 TCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELE  326 (532)
T ss_pred             EeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074        590 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~  632 (632)
                      |||++|||+++++++++++++||+|++|+++++|+  ++|++|+|
T Consensus       327 ~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~  371 (532)
T TIGR02343       327 LIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQ  371 (532)
T ss_pred             HHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEEC
Confidence            99999999999999999999999999999999998  48898864

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0361|consensus

Probab=100.00  E-value=2.2e-54  Score=434.65  Aligned_cols=309  Identities=75%  Similarity=1.143  Sum_probs=295.2

Q ss_pred             ccchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074        324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVD  403 (632)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~  403 (632)
                      +++|..++++|+....|.-.+.+|+.||..+++.++|||||+||||+|++..|+++|||||+||||.|++-||+|+.|++
T Consensus         2 m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVd   81 (543)
T KOG0361|consen    2 MQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVD   81 (543)
T ss_pred             CCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccc-----------------------------------------------------ccCCchhhHHHHHHHHhh
Q psy17074        404 IAKSQDAEI-----------------------------------------------------QKSDSGEYRGLLEKCAAT  430 (632)
Q Consensus       404 ~a~~q~~~~-----------------------------------------------------~~~~~~~~~~~L~~va~t  430 (632)
                      +|++||.++                                                     ...+....++.|.++|.|
T Consensus        82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T  161 (543)
T KOG0361|consen   82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT  161 (543)
T ss_pred             HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence            999999999                                                     001112347789999999


Q ss_pred             hcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074        431 ALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN  510 (632)
Q Consensus       431 ~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~  510 (632)
                      +|+||.+.+..++|+++++||+..+....+++.|.|.|++||++.||.+++|+.|.+.|.+.+|+++|+++.||||+++|
T Consensus       162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~Ln  241 (543)
T KOG0361|consen  162 ALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN  241 (543)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEe
Confidence            99999999999999999999999998777889999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074        511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR  590 (632)
Q Consensus       511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r  590 (632)
                      ..||.+..+.++.+.+.++++++.+...||+.+.+.+++|.++|.+||++.=.|.|.|.+||..++|-|-.|++.+||.|
T Consensus       242 vELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~R  321 (543)
T KOG0361|consen  242 VELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNR  321 (543)
T ss_pred             eeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +..++|+++.++..++.++.||+|..|+++++|+++|-+|+|
T Consensus       322 v~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Feg  363 (543)
T KOG0361|consen  322 VMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEG  363 (543)
T ss_pred             HHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcC
Confidence            999999999999999999999999999999999999999986

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=3.1e-53  Score=474.93  Aligned_cols=301  Identities=31%  Similarity=0.503  Sum_probs=280.2

Q ss_pred             hhcccC--ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHH
Q psy17074        329 LLLKEG--TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAK  406 (632)
Q Consensus       329 ~~~~~~--~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~  406 (632)
                      .+++++  .+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~   87 (526)
T cd03339           8 IIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK   87 (526)
T ss_pred             EEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence            345666  468899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc--------------------------------------------------ccCCc-hhhHHHHHHHHhhhcCCc
Q psy17074        407 SQDAEI--------------------------------------------------QKSDS-GEYRGLLEKCAATALSSK  435 (632)
Q Consensus       407 ~q~~~~--------------------------------------------------~~~~~-~~~~~~L~~va~t~l~sK  435 (632)
                      +|++++                                                  .+.+. ..+.+.|.++|+|+++||
T Consensus        88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk  167 (526)
T cd03339          88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSK  167 (526)
T ss_pred             hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhccc
Confidence            999999                                                  01110 124678999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074        436 LIHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI  511 (632)
Q Consensus       436 ~~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~  511 (632)
                      +.+.+.+.|++++++|+..+.+    .+|++.|+|.+++||+..||++++|++|++++.|++   |++.++||||+++++
T Consensus       168 ~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~---m~~~~~n~kI~ll~~  244 (526)
T cd03339         168 IVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQ---MPKEVKDAKIAILTC  244 (526)
T ss_pred             chhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCC---CCceecCCCEEEEEe
Confidence            8888899999999999998852    467789999999999999999999999999999986   789999999999999


Q ss_pred             cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074        512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT  591 (632)
Q Consensus       512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI  591 (632)
                      +|++++++.++++.++++++++++.++|+++++++++.+++.|++||||+++||+.+++||.++||++|+++++++|+||
T Consensus       245 ~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerI  324 (526)
T cd03339         245 PFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELI  324 (526)
T ss_pred             cccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074        592 MKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE  632 (632)
Q Consensus       592 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~  632 (632)
                      |++|||+++++++++++++||+|+.|+++.+|+  ++|+||+|
T Consensus       325 a~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g  367 (526)
T cd03339         325 AIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEG  367 (526)
T ss_pred             HHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEEC
Confidence            999999999999999999999999999999996  68898865

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=6.8e-53  Score=470.84  Aligned_cols=298  Identities=34%  Similarity=0.496  Sum_probs=279.2

Q ss_pred             cccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC--CCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074        331 LKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ--NGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ  408 (632)
Q Consensus       331 ~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~--~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q  408 (632)
                      ++++.+.++|.+++..|+.||..|+++++|||||+||+|||+++  +|+++|||||+||+++|+++||+|+|++++|++|
T Consensus         2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q   81 (517)
T cd03336           2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ   81 (517)
T ss_pred             CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence            45566788899999999999999999999999999999999998  5999999999999999999999999999999999


Q ss_pred             cccc--------------------------------------------------ccCCc--hhhHHHHHHHHhhhcCCcc
Q psy17074        409 DAEI--------------------------------------------------QKSDS--GEYRGLLEKCAATALSSKL  436 (632)
Q Consensus       409 ~~~~--------------------------------------------------~~~~~--~~~~~~L~~va~t~l~sK~  436 (632)
                      |+++                                                  .+.+.  ..+++.|.++|+|+++||+
T Consensus        82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~  161 (517)
T cd03336          82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI  161 (517)
T ss_pred             HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence            9999                                                  01111  1235789999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        437 IHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       437 ~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      .+.++++|++|+++|+..+++.+++++|++++++||++.||++++|+++++++.++    ||++++||||++++++|+++
T Consensus       162 ~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~~  237 (517)
T cd03336         162 LTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDTD  237 (517)
T ss_pred             cchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCcc
Confidence            99999999999999999998778899999999999999999999999999987653    78999999999999999999


Q ss_pred             hccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074        517 AERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  595 (632)
Q Consensus       517 ~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t  595 (632)
                      +++. ++++.+++++++..+.+.|+++++++++.|++.|+++++|++.|++.+++||.++||++|+++++++|+|||++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~t  317 (517)
T cd03336         238 KIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVT  317 (517)
T ss_pred             cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence            9987 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||+++++++++++++||+|++|++..+|+++|++|+|
T Consensus       318 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~  354 (517)
T cd03336         318 GGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSG  354 (517)
T ss_pred             CCEEecccCCCCcccccccceEEEEEECCeEEEEEEc
Confidence            9999999999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=5.2e-53  Score=473.09  Aligned_cols=304  Identities=34%  Similarity=0.490  Sum_probs=284.6

Q ss_pred             cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC-----CCCeEEccChHHHHhhccccChHhH
Q psy17074        325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ-----NGKSTISNDGATIMKLLDIVHPAAK  399 (632)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~-----~g~~~ITnDG~tIlk~l~i~hP~ak  399 (632)
                      +.|..+++++++.++|.+++..|+.||..|+++++|||||+||+|||+++     .|+++|||||+|||++|+++||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak   84 (533)
T PTZ00212          5 NVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK   84 (533)
T ss_pred             ccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence            45566789999999999999999999999999999999999999999998     6999999999999999999999999


Q ss_pred             HHHHHHHhccccc--------------------------------------------------ccCCch--hhHHHHHHH
Q psy17074        400 TLVDIAKSQDAEI--------------------------------------------------QKSDSG--EYRGLLEKC  427 (632)
Q Consensus       400 ll~~~a~~q~~~~--------------------------------------------------~~~~~~--~~~~~L~~v  427 (632)
                      |++++|++||+++                                                  .+.+..  .+++.|.++
T Consensus        85 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~v  164 (533)
T PTZ00212         85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNI  164 (533)
T ss_pred             HHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHH
Confidence            9999999999999                                                  011111  125789999


Q ss_pred             HhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEE
Q psy17074        428 AATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIA  507 (632)
Q Consensus       428 a~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIl  507 (632)
                      |+|+++||+.+.+.+.|++++++|+..+.+.++++.|++++++||++.||++++|+++++++.++    ||++++||||+
T Consensus       165 a~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~----~~~~i~n~kIl  240 (533)
T PTZ00212        165 ARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG----QPKRLENCKIL  240 (533)
T ss_pred             HHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCC----CCccccCCcEE
Confidence            99999999988899999999999999998778899999999999999999999999999997653    78999999999


Q ss_pred             EecccchhhhccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCch
Q psy17074        508 LLNIELELKAERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEE  586 (632)
Q Consensus       508 l~~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~  586 (632)
                      +++++||+++++. ++++.+++++++..+.++|+++++++++.|++.|+++++++++|++.+++||.++||++|++++++
T Consensus       241 l~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~  320 (533)
T PTZ00212        241 VANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFD  320 (533)
T ss_pred             EEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHH
Confidence            9999999999997 889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        587 DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       587 ~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++|||++|||+++++++++++++||+|++|+++.+|+++|++|+|
T Consensus       321 ~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~  366 (533)
T PTZ00212        321 GMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSG  366 (533)
T ss_pred             HHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEc
Confidence            9999999999999999999999999999999999999999999975

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=3.1e-53  Score=475.07  Aligned_cols=299  Identities=28%  Similarity=0.523  Sum_probs=279.1

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||
T Consensus         4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~   83 (525)
T TIGR02344         4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD   83 (525)
T ss_pred             eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074        410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +++                                                  .+.+. .+.+.|.++++|+++||+.+.
T Consensus        84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~i~~t~l~sk~~~~  162 (525)
T TIGR02344        84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDV-NDDAAMLKLIQSCIGTKFVSR  162 (525)
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC-CCHHHHHHHHHHhhccccchh
Confidence            999                                                  01111 145679999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcc-------cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074        440 QKGFFSKMVVDAVMSLDD-------LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI  511 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~-------~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~  511 (632)
                      |.+.|++++++|+..++.       .+|++ +|+|++++||+++||++++|++|++++.++   +||++++||+|+++++
T Consensus       163 ~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~---~m~~~~~n~kIlll~~  239 (525)
T TIGR02344       163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP---KMRRYIENPRIVLLDC  239 (525)
T ss_pred             HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC---CCccccCCCCEEEEec
Confidence            999999999999999962       23433 489999999999999999999999998877   4899999999999999


Q ss_pred             cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074        512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT  591 (632)
Q Consensus       512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI  591 (632)
                      +|++.+++.++++.+++++++++++++|++++++++++|.+.|++||+|+++|++.+++||.++||++++++++++|+||
T Consensus       240 ~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerI  319 (525)
T TIGR02344       240 PLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRI  319 (525)
T ss_pred             ccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        592 MKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       592 a~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++|||+++++++++++++||+ |+.|+++++|+++|++|+|
T Consensus       320 a~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g  361 (525)
T TIGR02344       320 ARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTE  361 (525)
T ss_pred             HHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEc
Confidence            9999999999999999999999 9999999999999999975

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=7.2e-53  Score=471.19  Aligned_cols=303  Identities=70%  Similarity=1.081  Sum_probs=286.6

Q ss_pred             hhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074        329 LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ  408 (632)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q  408 (632)
                      .+++++.+.++|.+++..|+.||.+|+++|+|||||+||+|||+++.| ++|||||+|||++|+++||+|+|++++|++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q   83 (522)
T TIGR02345         5 VLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQ   83 (522)
T ss_pred             chhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHH
Confidence            467888889999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             cccc--------------------------------------------------ccCCc--hhhHHHHHHHHhhhcCCcc
Q psy17074        409 DAEI--------------------------------------------------QKSDS--GEYRGLLEKCAATALSSKL  436 (632)
Q Consensus       409 ~~~~--------------------------------------------------~~~~~--~~~~~~L~~va~t~l~sK~  436 (632)
                      |+++                                                  .+.+.  ..+.+.|.++|+|+++||+
T Consensus        84 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~  163 (522)
T TIGR02345        84 DSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKL  163 (522)
T ss_pred             HHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccc
Confidence            9999                                                  01110  0135689999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHhcc-cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074        437 IHQQKGFFSKMVVDAVMSLDD-LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL  515 (632)
Q Consensus       437 ~~~~~~~l~~li~~A~~~v~~-~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~  515 (632)
                      .+.++++|++++++|+..++. .+|+++|+|+++.||+..||++++|++|+++|.+|+|.+||+.++||+|++++++|++
T Consensus       164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~  243 (522)
T TIGR02345       164 IAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELEL  243 (522)
T ss_pred             ccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCccc
Confidence            999999999999999999974 5888999999999999999999999999999999998889999999999999999999


Q ss_pred             hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074        516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  595 (632)
Q Consensus       516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t  595 (632)
                      .+.+.+..+.++++++++++.+.|++++.++++++++.|++||+|+++|++.+++||.++||++++++++++++|||++|
T Consensus       244 ~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t  323 (522)
T TIGR02345       244 KAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKAC  323 (522)
T ss_pred             CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||+++++++++++++||+|+.|+++++|+++|++|+|
T Consensus       324 ga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g  360 (522)
T TIGR02345       324 GGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTG  360 (522)
T ss_pred             CCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEc
Confidence            9999999999999999999999999999999999975

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=2.5e-52  Score=467.72  Aligned_cols=294  Identities=35%  Similarity=0.536  Sum_probs=273.2

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---
Q psy17074        336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---  412 (632)
Q Consensus       336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~---  412 (632)
                      +..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++|++++   
T Consensus         2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG   81 (527)
T cd03335           2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG   81 (527)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             -----------------------cc---------------------C--Cch-hhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 -----------------------QK---------------------S--DSG-EYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 -----------------------~~---------------------~--~~~-~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                             +|                     .  ... .+++.|.++|+|+++||+.+.+.++|+
T Consensus        82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls  161 (527)
T cd03335          82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA  161 (527)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence                                   00                     0  110 156789999999999999988899999


Q ss_pred             HHHHHHHHHhc---c----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhc
Q psy17074        446 KMVVDAVMSLD---D----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE  518 (632)
Q Consensus       446 ~li~~A~~~v~---~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~  518 (632)
                      +++++|+..++   .    .+|+++|+|+++.||+..+|++++|++|++++.++   +||+.++||+|++++++|++.++
T Consensus       162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~---~m~~~i~n~kIlll~~~Le~~~~  238 (527)
T cd03335         162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQ---GMPTRVKNAKIACLDFNLQKTKM  238 (527)
T ss_pred             HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCC---CCcccccCCcEEEEeccCCCCcc
Confidence            99999999984   1    37889999999999999999999999999999988   48999999999999999999999


Q ss_pred             cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074        519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA  598 (632)
Q Consensus       519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~  598 (632)
                      +.++++.++++.+++.+.++|+++++++++.|++.|++||||+++||+.+++||.++||++++++++++|+|||++|||+
T Consensus       239 ~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~  318 (527)
T cd03335         239 KLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT  318 (527)
T ss_pred             ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccCC------CCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        599 VMTTAHDL------NDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       599 ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++++++++      ++++||+|++|+++++|+++|++|+|
T Consensus       319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g  358 (527)
T cd03335         319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKG  358 (527)
T ss_pred             EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEc
Confidence            99998655      34589999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=7.2e-52  Score=463.36  Aligned_cols=294  Identities=31%  Similarity=0.478  Sum_probs=275.6

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---
Q psy17074        336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---  412 (632)
Q Consensus       336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~---  412 (632)
                      .+..+.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++   
T Consensus         2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG   81 (515)
T cd03338           2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG   81 (515)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             -----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 -----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 -----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                                     .+++. .+.+.|.++|+|+++||+.+.+++.|+
T Consensus        82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~-~~~~~l~~va~ts~~sK~~~~~~~~ls  160 (515)
T cd03338          82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDL-NDRESLIKSATTSLNSKVVSQYSSLLA  160 (515)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHhccccchhhHHHHH
Confidence                                                           11111 246789999999999999999999999


Q ss_pred             HHHHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +++++|+.++++     .+|+++|+|.+..||+++||++++|++|++++.++++  ||+.++||+|++++|+|++.+++.
T Consensus       161 ~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~~~~  238 (515)
T cd03338         161 PIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPKTDM  238 (515)
T ss_pred             HHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEecccccccccc
Confidence            999999999973     4788999999999999999999999999999998753  489999999999999999999999


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKAC  595 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t  595 (632)
                      ..++.++++++++.+.++|+++++++++.|++.|++||||+++|     ++.+++||.++||++|+++++++|+|||++|
T Consensus       239 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~t  318 (515)
T cd03338         239 DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTI  318 (515)
T ss_pred             CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998     8999999999999999999999999999999


Q ss_pred             CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||+++++++++++++||+|++|+++++|+++|++|++
T Consensus       319 Ga~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~  355 (515)
T cd03338         319 GCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG  355 (515)
T ss_pred             CCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence            9999999999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=1.1e-51  Score=461.24  Aligned_cols=292  Identities=30%  Similarity=0.476  Sum_probs=274.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-----
Q psy17074        338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-----  412 (632)
Q Consensus       338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-----  412 (632)
                      ..+.+++.+|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++     
T Consensus         5 ~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTt   84 (517)
T TIGR02342         5 DKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTT   84 (517)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcc
Confidence            456778899999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             ---------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074        413 ---------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM  447 (632)
Q Consensus       413 ---------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l  447 (632)
                                                                   .+.+. .+++.|.++|+|+++||+.+.+.++|+++
T Consensus        85 t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~va~tsl~sK~~~~~~~~ls~l  163 (517)
T TIGR02342        85 SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDL-SDREILIKSATTSLSSKVVSQYSSLLAPL  163 (517)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCc-cCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence                                                         11111 24678999999999999999999999999


Q ss_pred             HHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCc
Q psy17074        448 VVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA  522 (632)
Q Consensus       448 i~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~  522 (632)
                      +++|+..+++     .+|+++|+|+++.||+..+|++++|++|++++.++.  +||+.++||||++++|+|++++++...
T Consensus       164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~~~~~  241 (517)
T TIGR02342       164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKTDMEN  241 (517)
T ss_pred             HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcccccc
Confidence            9999999964     478899999999999999999999999999998842  489999999999999999999999999


Q ss_pred             eEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074        523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  597 (632)
Q Consensus       523 ~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa  597 (632)
                      ++.++++++++.++++|+++++++++.+++.|++||+|+++|     ++.+++||.++||++|+++++++|+|||++|||
T Consensus       242 ~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa  321 (517)
T TIGR02342       242 QVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGC  321 (517)
T ss_pred             eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             eEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       598 ~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++++++++||+|+.|+++++|+++|++|++
T Consensus       322 ~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~  356 (517)
T TIGR02342       322 KPIASIDHFTADKLGSAELVEEVTTDGGKIIKITG  356 (517)
T ss_pred             EEEcchhhcCcccCcCCceEEEEEECCeEEEEEEc
Confidence            99999999999999999999999999999998864

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=2.4e-51  Score=460.30  Aligned_cols=295  Identities=37%  Similarity=0.534  Sum_probs=274.0

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc--
Q psy17074        335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--  412 (632)
Q Consensus       335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--  412 (632)
                      .++++|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||+++  
T Consensus         5 ~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD   84 (536)
T TIGR02340         5 GERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGD   84 (536)
T ss_pred             cceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCC
Confidence            457788999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ------------------------cc-----------------------CCch-hhHHHHHHHHhhhcCCccccchhhHH
Q psy17074        413 ------------------------QK-----------------------SDSG-EYRGLLEKCAATALSSKLIHQQKGFF  444 (632)
Q Consensus       413 ------------------------~~-----------------------~~~~-~~~~~L~~va~t~l~sK~~~~~~~~l  444 (632)
                                              +|                       .... .+.+.|.++|+|+++||+.+.+++.|
T Consensus        85 GTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l  164 (536)
T TIGR02340        85 GTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFF  164 (536)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHH
Confidence                                    00                       0010 14677999999999999999999999


Q ss_pred             HHHHHHHHHHhc--c-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhh
Q psy17074        445 SKMVVDAVMSLD--D-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA  517 (632)
Q Consensus       445 ~~li~~A~~~v~--~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~  517 (632)
                      ++++++|+..++  +     .+|+++|+++++.||+..+|++++|++|+++|.++   +||+.++||+|++++++|++.+
T Consensus       165 s~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~---~m~~~~~n~kIli~~~~L~~~~  241 (536)
T TIGR02340       165 SNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQ---QMPKRIKKAKIACLDFNLQKQK  241 (536)
T ss_pred             HHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCC---CCcceecCCcEEEEecCCCCCc
Confidence            999999999985  1     36889999999999999999999999999999988   4899999999999999999999


Q ss_pred             ccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074        518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  597 (632)
Q Consensus       518 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa  597 (632)
                      ++.++++.++++.+++.+.++|++++.++++.|++.|++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus       242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa  321 (536)
T TIGR02340       242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG  321 (536)
T ss_pred             ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecccCC------CCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        598 AVMTTAHDL------NDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       598 ~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++++++.++      ++++||+|++|+++++|+++|++|+|
T Consensus       322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~  362 (536)
T TIGR02340       322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKG  362 (536)
T ss_pred             EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEc
Confidence            999998554      45569999999999999999999975

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=4e-51  Score=456.08  Aligned_cols=299  Identities=31%  Similarity=0.472  Sum_probs=278.4

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCC--CCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQN--GKSTISNDGATIMKLLDIVHPAAKTLVDIAKS  407 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~--g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~  407 (632)
                      +++++.+.+++.+++..|+.||.+|+++++|||||+||+|||+++.  |+++|||||+|||++|+++||+|+|++++|++
T Consensus         2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~   81 (519)
T TIGR02341         2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV   81 (519)
T ss_pred             CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence            4567778889999999999999999999999999999999999985  99999999999999999999999999999999


Q ss_pred             ccccc--------------------------------------------------ccCCch--hhHHHHHHHHhhhcCCc
Q psy17074        408 QDAEI--------------------------------------------------QKSDSG--EYRGLLEKCAATALSSK  435 (632)
Q Consensus       408 q~~~~--------------------------------------------------~~~~~~--~~~~~L~~va~t~l~sK  435 (632)
                      ||+++                                                  .+.+..  .+++.|.++|+|+++||
T Consensus        82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk  161 (519)
T TIGR02341        82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK  161 (519)
T ss_pred             hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence            99999                                                  011100  13578999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074        436 LIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL  515 (632)
Q Consensus       436 ~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~  515 (632)
                      +.+.+.+.|++++++|+..+.+..+.++|++.++.||++.+|++++|+++++++.++    ||+.++||+|++++++|++
T Consensus       162 i~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~----~~~~~~n~~Ili~~~~Le~  237 (519)
T TIGR02341       162 ILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVN----QPKRIENAKILIANTPMDT  237 (519)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCC----CceeeccccEEEEecCCCC
Confidence            998999999999999999997656778899999999999999999999999997653    7899999999999999999


Q ss_pred             hhccC-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHH
Q psy17074        516 KAERD-NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  594 (632)
Q Consensus       516 ~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~  594 (632)
                      .+++. ++++.+++++++..+.+.|++++.++++.|++.|+++++|++.|++.+++||.++||++++++++.+|+|||++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~  317 (519)
T TIGR02341       238 DKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALV  317 (519)
T ss_pred             CccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence            99887 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        595 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       595 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||+++++++++++++||+|+.|+++.+|+++|++|+|
T Consensus       318 tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~  355 (519)
T TIGR02341       318 TGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSG  355 (519)
T ss_pred             hCCEEecccccCCccccccCceEEEEEECCEEEEEEEc
Confidence            99999999999999999999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=100.00  E-value=7e-51  Score=455.33  Aligned_cols=298  Identities=26%  Similarity=0.411  Sum_probs=275.1

Q ss_pred             hhcccCccccCCc-hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074        329 LLLKEGTENSQGK-PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKS  407 (632)
Q Consensus       329 ~~~~~~~~~~~~~-~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~  407 (632)
                      .+++++....+|. +++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~s   83 (531)
T TIGR02346         4 SLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEM   83 (531)
T ss_pred             ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHH
Confidence            3456665666665 599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc--------------------------------------------------c-cCCchhhHHHHHHHHhhhcCCcc
Q psy17074        408 QDAEI--------------------------------------------------Q-KSDSGEYRGLLEKCAATALSSKL  436 (632)
Q Consensus       408 q~~~~--------------------------------------------------~-~~~~~~~~~~L~~va~t~l~sK~  436 (632)
                      ||+++                                                  . +++...+.+.|.++++|+++||+
T Consensus        84 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~  163 (531)
T TIGR02346        84 QENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQ  163 (531)
T ss_pred             HhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhcccc
Confidence            99999                                                  0 11111236789999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEeccc
Q psy17074        437 IHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE  512 (632)
Q Consensus       437 ~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~  512 (632)
                      .+. +++|++++++|+..++.    .++++.|+|+++.||+.+||++++|++|++++.     .||+.++||||+++++|
T Consensus       164 ~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~~~~  237 (531)
T TIGR02346       164 YGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVFSCP  237 (531)
T ss_pred             Cch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEEecC
Confidence            877 99999999999999973    578899999999999999999999999999843     26899999999999999


Q ss_pred             chhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHH
Q psy17074        513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM  592 (632)
Q Consensus       513 Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa  592 (632)
                      +++.+++.++++.++++.++..+.+.|+++++++++.+++.|++||||+++|+|.+++||.++||+||+++++.+|+|||
T Consensus       238 l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia  317 (531)
T TIGR02346       238 LDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLC  317 (531)
T ss_pred             cCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        593 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       593 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++|||+++++++++++++||+|++|+++++|+++|++|++
T Consensus       318 ~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~  357 (531)
T TIGR02346       318 KTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQ  357 (531)
T ss_pred             HHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEc
Confidence            9999999999999999999999999999999999999864

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0358|consensus

Probab=100.00  E-value=1.2e-51  Score=414.32  Aligned_cols=292  Identities=29%  Similarity=0.464  Sum_probs=270.0

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc----
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI----  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~----  412 (632)
                      ..+..++|.+||.|+++++|++||||||+||||||++..|+++|||||+|||+.|++-||+|+||++++..||.++    
T Consensus        21 ~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGT  100 (534)
T KOG0358|consen   21 KEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGT  100 (534)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCc
Confidence            3455789999999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             ----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074        413 ----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSK  446 (632)
Q Consensus       413 ----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~  446 (632)
                                                                    .++.. .+++.|.+.|.|+|+||+.+++...+++
T Consensus       101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~vel-sdre~Li~~atTsLnSKvvSq~s~llap  179 (534)
T KOG0358|consen  101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVEL-SDRESLIKSATTSLNSKVVSQYSSLLAP  179 (534)
T ss_pred             eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCccc-CcHHHHHHHHHhHhhHHHHHhhccccch
Confidence                                                          11222 3678899999999999999999999999


Q ss_pred             HHHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCC
Q psy17074        447 MVVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       447 li~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      ++++|++++.+     +.|+.+|+|+|..||.++|+++++|++|++......   -|++++++||.++.|.++++++.+.
T Consensus       180 mAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~---gptriekAkIglIQF~iS~PKtdme  256 (534)
T KOG0358|consen  180 MAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA---GPTRIEKAKIGLIQFQISPPKTDME  256 (534)
T ss_pred             HHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCC---CcchhhhceeeEEEEEecCCCCCcc
Confidence            99999999863     578899999999999999999999999998765432   5889999999999999999999999


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMKACG  596 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG  596 (632)
                      .++.++++.+|+.++++|++|+.+++++|++.|++|+++|++|     +|.++|||.+.+||+|+.+.++|++.+|+.+|
T Consensus       257 n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~  336 (534)
T KOG0358|consen  257 NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLG  336 (534)
T ss_pred             cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcC
Confidence            9999999999999999999999999999999999999999987     89999999999999999999999999999999


Q ss_pred             CeEeecccCCCCCCCeeeeEEEEE-EEcCeEEEEecC
Q psy17074        597 GAVMTTAHDLNDSVLGTCAVFDER-QIGSERDTLNRE  632 (632)
Q Consensus       597 a~ii~~l~~l~~~~lG~~~~v~~~-~ig~~~~~~~~~  632 (632)
                      +.++.++++++++.||+++.+++. .-|+.+++.+.|
T Consensus       337 c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg  373 (534)
T KOG0358|consen  337 CKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITG  373 (534)
T ss_pred             CeecchhhhcChhhcCcchhhhhcccCCCccEEEEEE
Confidence            999999999999999999999987 445557776654

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=8.9e-50  Score=442.05  Aligned_cols=268  Identities=26%  Similarity=0.399  Sum_probs=248.6

Q ss_pred             cCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc
Q psy17074        333 EGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI  412 (632)
Q Consensus       333 ~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~  412 (632)
                      ++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++
T Consensus         3 ~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~   82 (484)
T cd03342           3 PKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT   82 (484)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhh
Q psy17074        413 --------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKG  442 (632)
Q Consensus       413 --------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~  442 (632)
                                                                        .+++...+.+.|.++|+|+++||+.+.+.+
T Consensus        83 GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~  162 (484)
T cd03342          83 GDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLAD  162 (484)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHH
Confidence                                                              011110257789999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhcc
Q psy17074        443 FFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       443 ~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      .|++++++|+..++.   .+|+++|+|+++.||+..||++++|++|++++.+|+   ||++++||+|++++++|++.+++
T Consensus       163 ~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~---m~~~~~n~~Ill~~~~le~~~~~  239 (484)
T cd03342         163 QLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPD---MPKRVENAYILTCNVSLEYEKTE  239 (484)
T ss_pred             HHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCC---CCccccCceEEEEeCCCCCCccc
Confidence            999999999999973   578899999999999999999999999999999986   68999999999999999999888


Q ss_pred             CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeE
Q psy17074        520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV  599 (632)
Q Consensus       520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~i  599 (632)
                      ...++.++                             ||||+++|++.+++||.++||++|+++++++|+|||++|||++
T Consensus       240 ~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~i  290 (484)
T cd03342         240 VNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVA  290 (484)
T ss_pred             cCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEE
Confidence            77766542                             9999999999999999999999999999999999999999999


Q ss_pred             eecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        600 MTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       600 i~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++++++||+|++|+++.+|+++|+||+|
T Consensus       291 i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~  323 (484)
T cd03342         291 MNSVDDLSPECLGYAGLVYERTLGEEKYTFIEG  323 (484)
T ss_pred             ecccccCChhhCcccceEEEEEECCeEEEEEEC
Confidence            999999999999999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=5.3e-50  Score=448.73  Aligned_cols=269  Identities=33%  Similarity=0.540  Sum_probs=252.8

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.+++++++..++++|+++++++++++++.|+||||++++|++.|++||.++||++++++++++|+|||++
T Consensus       240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~  319 (517)
T cd03343         240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA  319 (517)
T ss_pred             CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|++|++.++++++|++|++|.++..|||+|||+|+.+++|++|+++|||+++++++++|++
T Consensus       320 tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~v  399 (517)
T cd03343         320 TGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKV  399 (517)
T ss_pred             hCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d  268 (632)
                      |||||++|++++.+|++++ ..+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.  +..+|||
T Consensus       400 vpGGG~~e~~ls~~L~~~~~~~~~~------~~~~~~~~-~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d  472 (517)
T cd03343         400 VAGGGAVEIELAKRLREYARSVGGR------EQLAVEAF-ADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLD  472 (517)
T ss_pred             eeCCCHHHHHHHHHHHHHHhcCCCH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeee
Confidence            9999999999999999886 33444      45577888 999999999998 999999999999987664  2347999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      .  .+|.++||.+.|||||+   +++|++|+++|+++||+|++|.
T Consensus       473 ~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  515 (517)
T cd03343         473 V--YTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA  515 (517)
T ss_pred             c--CCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence            9  99999999999999999   8999999999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=8.2e-50  Score=446.87  Aligned_cols=269  Identities=29%  Similarity=0.522  Sum_probs=252.5

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.+++++++.+++++|+++++.++++|++.|+|||+++++|++.|++||.++||++++++++++|+|||++
T Consensus       243 ~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~  322 (519)
T TIGR02339       243 VEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARA  322 (519)
T ss_pred             ccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||++++++++++++.||+|++|+++++++++|++|++|.++..|||+|||+|+.+++|.+|+++|||+++++++++|++
T Consensus       323 tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~v  402 (519)
T TIGR02339       323 TGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKV  402 (519)
T ss_pred             hCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccc
Q psy17074        193 VAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d  268 (632)
                      |||||++||++|.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.  +..+|||
T Consensus       403 vpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid  475 (519)
T TIGR02339       403 VAGGGAVEIELALRLRSYARKIGGR------EQLAIEAF-ADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGIN  475 (519)
T ss_pred             eeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEE
Confidence            99999999999999998863 3444      45677888 999999999998 999999999999987664  2348999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      .  .+|+++||.+.|||||+   ++++++|+++|+++||+|++|.
T Consensus       476 ~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  518 (519)
T TIGR02339       476 V--FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA  518 (519)
T ss_pred             c--CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence            9  99999999999999999   8999999999999999999874

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=1.3e-49  Score=445.74  Aligned_cols=265  Identities=26%  Similarity=0.415  Sum_probs=248.5

Q ss_pred             cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074         37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA  116 (632)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~  116 (632)
                      +++.++.++++++|+.++++|+++++++++++.+.|+||||++++|++.|++||.++||++++++++.+|+|||++|||+
T Consensus       252 ~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~  331 (526)
T cd03339         252 KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGR  331 (526)
T ss_pred             ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCE
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074        117 VMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA  194 (632)
Q Consensus       117 ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp  194 (632)
                      +++++++++++.||+|+.|+++.++.  ++|++|++|+++++|||+|||+|+.+++|+||+++|||+++++++++|++||
T Consensus       332 ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvp  411 (526)
T cd03339         332 IVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVY  411 (526)
T ss_pred             EecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEe
Confidence            99999999999999999999999985  6889999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccccc
Q psy17074        195 GGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDS  269 (632)
Q Consensus       195 GGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~  269 (632)
                      |||++||++|.+|++++ ..+++      +++++++| ++||++||++|+ |||+|+.+++.+|+..|.   +..+|||.
T Consensus       412 GGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~  484 (526)
T cd03339         412 GGGAAEISCSLAVEKAADKCSGI------EQYAMRAF-ADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDC  484 (526)
T ss_pred             CCCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeec
Confidence            99999999999999986 33444      45577888 999999999998 999999999999987763   22379999


Q ss_pred             ccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        270 VEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       270 ~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                        .+|.++||.+.|||||+   +++|++|+++|+++||+|++|+
T Consensus       485 --~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         485 --LGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             --CCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence              99999999999999999   8999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=1.4e-49  Score=445.64  Aligned_cols=269  Identities=27%  Similarity=0.490  Sum_probs=252.6

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      ...+.++++.++++++++.++++|+++++.++++|.+.|++||+++++|++.++++|.++||++++++++++|+|||++|
T Consensus       244 ~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~t  323 (525)
T TIGR02344       244 KKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARAC  323 (525)
T ss_pred             ccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHh
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        114 GGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       114 Ga~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      ||++++++++++++++|+ |+.|+++++++++|++|++|.++.+|||+|||+|+.+++|+||+++||+++++++++++++
T Consensus       324 Ga~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~v  403 (525)
T TIGR02344       324 GATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKL  403 (525)
T ss_pred             CCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---Ccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---AEIRL  267 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---~~~G~  267 (632)
                      ||||||+|++||.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+   ..+||
T Consensus       404 vpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi  476 (525)
T TIGR02344       404 LPGGGATEMAVSVYLAKKASKLEGV------QQWPYRAV-ADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI  476 (525)
T ss_pred             ccCCCHHHHHHHHHHHHHHhcCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence            9999999999999999986 33454      45577888 999999999998 9999999999999887742   23799


Q ss_pred             ccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      |.  .+|+++||.+.|||||+   ++++++|+++|+++||+|++|..
T Consensus       477 d~--~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  521 (525)
T TIGR02344       477 DG--ETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSG  521 (525)
T ss_pred             EC--CCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence            99  99999999999999999   88999999999999999999865

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=2.5e-49  Score=443.39  Aligned_cols=268  Identities=30%  Similarity=0.438  Sum_probs=248.8

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      .+.+.++++.++++++++.+.++|++++++++++|++.|+||||++++|++.|++||.++||++++++++++|+|||++|
T Consensus       236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t  315 (527)
T cd03335         236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT  315 (527)
T ss_pred             CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCC------CCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074        114 GGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI  187 (632)
Q Consensus       114 Ga~ii~~l~~l------~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~  187 (632)
                      ||+++++++++      ++.+||+|++|+++++++++|++|++|.++++|||+|||+|+.+++|++|+++||++++++++
T Consensus       316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~  395 (527)
T cd03335         316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL  395 (527)
T ss_pred             CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999987655      345899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---
Q psy17074        188 RNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---  262 (632)
Q Consensus       188 ~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---  262 (632)
                      ++|++|||||++|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|..   
T Consensus       396 ~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~  468 (527)
T cd03335         396 ESNSVVPGGGAVETALSIYLENFATTLGSR------EQLAIAEF-AEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQV  468 (527)
T ss_pred             hCCCEeeCCCHHHHHHHHHHHHHHhccCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999863 3444      45677888 999999999998 9999999999999876632   


Q ss_pred             -------CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        263 -------AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       263 -------~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                             ..+|||.  .+|+++||.+.|||||+   .++|+.|+++|+++||+|++|.
T Consensus       469 ~~~~~~~~~~Gid~--~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~  524 (527)
T cd03335         469 KPDKKHLKWYGLDL--INGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIK  524 (527)
T ss_pred             ccccccCceEeEEC--CCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceee
Confidence                   2379999  99999999999999999   8899999999999999999884

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=2.3e-49  Score=442.25  Aligned_cols=270  Identities=22%  Similarity=0.389  Sum_probs=252.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc---EEEEecCcChhHHHHHHHCCceEEEeCC
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASG-------AQ---VVLSKLPIGDVATQYFADRDMFCAGRVP  102 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g-------~~---lvi~~~~I~~~al~~l~~~~I~~~~~v~  102 (632)
                      +.+.+.+.++.+++++++..+++.|+++++.++++|++.|       ++   ||+|+++|++.+++||.++||+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~  318 (531)
T TIGR02347       239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK  318 (531)
T ss_pred             CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence            3345678899999999999999999999999999999977       26   9999999999999999999999999999


Q ss_pred             chhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHH
Q psy17074        103 EEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMI  182 (632)
Q Consensus       103 ~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~  182 (632)
                      +++|+|||++|||+++++++++++++||+|++|+++.+++++|++|++|.++++|||+|||+|+.+++|++|+++||+++
T Consensus       319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v  398 (531)
T TIGR02347       319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRA  398 (531)
T ss_pred             HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhcc
Q psy17074        183 VRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAER  260 (632)
Q Consensus       183 ~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~  260 (632)
                      +++++++|++||||||+|+++|.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|
T Consensus       399 ~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~------~~~~i~~f-a~ALe~ip~~La~NaG~d~~~vl~~l~~~~  471 (531)
T TIGR02347       399 VKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGK------AKLGVEAF-ANALLVIPKTLAENSGLDAQDTLVKLEDEH  471 (531)
T ss_pred             HHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999863 3444      45677888 999999999998 99999999999998777


Q ss_pred             CC--CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        261 DN--AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       261 ~~--~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      .+  ..+|||.  .+|.++||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       472 ~~~~~~~Gid~--~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~  525 (531)
T TIGR02347       472 DEGGEVVGVDL--ETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRA  525 (531)
T ss_pred             HccCCceeeec--cCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence            53  2479999  99999999999999999   89999999999999999998854

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=4.6e-49  Score=441.25  Aligned_cols=265  Identities=25%  Similarity=0.384  Sum_probs=250.2

Q ss_pred             cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074         39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM  118 (632)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii  118 (632)
                      ++++.+++++++..+.++|+++++++++.|++.|+++++++++|++.+++||.++||.+++++++.+++|||++|||+++
T Consensus       255 ~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~ii  334 (533)
T PTZ00212        255 GAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIV  334 (533)
T ss_pred             CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEe
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074        119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA  198 (632)
Q Consensus       119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa  198 (632)
                      ++++++++++||+|++|++..+++++|++|++|..+++|||+|||+|+.+++|.||+++|||+++++++++|++||||||
T Consensus       335 s~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa  414 (533)
T PTZ00212        335 STFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGC  414 (533)
T ss_pred             ecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc
Q psy17074        199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ  274 (632)
Q Consensus       199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~  274 (632)
                      +|+++|.+|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+  ..+|||.  .+|
T Consensus       415 ~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~--~~g  485 (533)
T PTZ00212        415 SEMLMANAVEELAKKVEGK------KSLAIEAF-AKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDM--EKG  485 (533)
T ss_pred             HHHHHHHHHHHHHhhCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceec--cCC
Confidence            99999999999863 3444      45577888 999999999998 9999999999999876642  2379999  999


Q ss_pred             hhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      .++||.+.|||||+   +++|++|+++|+++||+|++|...
T Consensus       486 ~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  526 (533)
T PTZ00212        486 TVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCA  526 (533)
T ss_pred             cccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence            99999999999999   999999999999999999999764

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=4.4e-49  Score=440.90  Aligned_cols=265  Identities=27%  Similarity=0.416  Sum_probs=248.4

Q ss_pred             cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCE
Q psy17074         37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA  116 (632)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~  116 (632)
                      +++.++.++++++++.+.++|+++++++++++++.|+|||||+++|++.+++||.++||++++++++++|+|||++|||+
T Consensus       256 ~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~  335 (532)
T TIGR02343       256 KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGR  335 (532)
T ss_pred             ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCE
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074        117 VMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA  194 (632)
Q Consensus       117 ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp  194 (632)
                      ++++++++++++||+|++|+++.+|.  ++|++|++|+++.+|||+|||+|+.+++|+||+++||++++++++++|++||
T Consensus       336 ~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvp  415 (532)
T TIGR02343       336 IVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVY  415 (532)
T ss_pred             EecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEe
Confidence            99999999999999999999999987  4899999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccccc
Q psy17074        195 GGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDS  269 (632)
Q Consensus       195 GGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~  269 (632)
                      |||++|+++|++|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+++..|.   +..+|||.
T Consensus       416 GGGa~e~~ls~~l~~~~~~~~~~------~~~~i~~f-a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~  488 (532)
T TIGR02343       416 GGGAAEISCSLAVSQEADKYSGV------EQYAIRAF-ADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDC  488 (532)
T ss_pred             CcCHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeC
Confidence            999999999999998863 3444      45577888 999999999998 999999999999987663   22379999


Q ss_pred             ccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        270 VEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       270 ~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                        .+|.++||.+.|||||+   .++|++|+++|+++||+|++|.
T Consensus       489 --~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~  530 (532)
T TIGR02343       489 --LGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS  530 (532)
T ss_pred             --CCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence              99999999999999999   8999999999999999999985

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0362|consensus

Probab=100.00  E-value=3.3e-48  Score=402.52  Aligned_cols=299  Identities=26%  Similarity=0.420  Sum_probs=272.0

Q ss_pred             hhhhcccCccccCCc-hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHH
Q psy17074        327 QILLLKEGTENSQGK-PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA  405 (632)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a  405 (632)
                      -.++++.|.+..+|. ++..+|++||+.|++++||+|||+|||||++|+.|+.++|||.+||+++++++||+|||+++++
T Consensus        10 ~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~   89 (537)
T KOG0362|consen   10 IPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEAT   89 (537)
T ss_pred             hhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHH
Confidence            346889998888775 5889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccccc--------------------------ccCC----------------------chhhHHHHHHHHhhhcCCccc
Q psy17074        406 KSQDAEI--------------------------QKSD----------------------SGEYRGLLEKCAATALSSKLI  437 (632)
Q Consensus       406 ~~q~~~~--------------------------~~~~----------------------~~~~~~~L~~va~t~l~sK~~  437 (632)
                      ++|+.++                          .+..                      ...+.++..++++++++||..
T Consensus        90 ~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~  169 (537)
T KOG0362|consen   90 QMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQY  169 (537)
T ss_pred             HHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhc
Confidence            9999887                          0000                      000111223788899988854


Q ss_pred             cchhhHHHHHHHHHHHHhccc--CCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074        438 HQQKGFFSKMVVDAVMSLDDL--LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL  515 (632)
Q Consensus       438 ~~~~~~l~~li~~A~~~v~~~--~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~  515 (632)
                       ...+++++++++|+.++...  |+.++|+++|+.||++++|+++.||+|.+.+.-     .++.-+.+||++++||++.
T Consensus       170 -~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG-----~v~~ak~arvAvf~cP~d~  243 (537)
T KOG0362|consen  170 -GNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEG-----EVKSAKDARVAVFACPFDI  243 (537)
T ss_pred             -chHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccCC-----cccccccceeEEEecCCCc
Confidence             46899999999999999855  899999999999999999999999999998763     3467778999999999999


Q ss_pred             hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074        516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  595 (632)
Q Consensus       516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t  595 (632)
                      ..+++++++.+++++++.+|.+.|+..++..++.|+..|++||++.+.|+++++|||++++|++++..++.||+|||+..
T Consensus       244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtv  323 (537)
T KOG0362|consen  244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTV  323 (537)
T ss_pred             ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074        596 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNR  631 (632)
Q Consensus       596 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~  631 (632)
                      ||++++++..+.++.+|+|++|+..++|++.++.|+
T Consensus       324 GA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~  359 (537)
T KOG0362|consen  324 GATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFR  359 (537)
T ss_pred             CCccchhccCCCCccccccceeeeeecCCceEEEEe
Confidence            999999999999999999999999999999999996

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=6.3e-49  Score=438.96  Aligned_cols=264  Identities=25%  Similarity=0.382  Sum_probs=249.9

Q ss_pred             cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074         39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM  118 (632)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii  118 (632)
                      ++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus       243 ~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii  322 (517)
T cd03336         243 GAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIA  322 (517)
T ss_pred             CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074        119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA  198 (632)
Q Consensus       119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa  198 (632)
                      ++++++++++||+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++|||+++++++++|++|||||+
T Consensus       323 ~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa  402 (517)
T cd03336         323 STFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGC  402 (517)
T ss_pred             cccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc
Q psy17074        199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ  274 (632)
Q Consensus       199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~  274 (632)
                      +|+++|.+|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+  ..+|||.  .+|
T Consensus       403 ~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g  473 (517)
T cd03336         403 SEMLMAKAVEELAKKTPGK------KSLAIEAF-AKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDM--RKG  473 (517)
T ss_pred             HHHHHHHHHHHHhhhCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeec--CCC
Confidence            99999999999863 3444      45577888 999999999998 9999999999999887642  3379999  999


Q ss_pred             hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      .++||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  513 (517)
T cd03336         474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKC  513 (517)
T ss_pred             CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhc
Confidence            99999999999999   89999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0363|consensus

Probab=100.00  E-value=6.9e-49  Score=392.66  Aligned_cols=303  Identities=33%  Similarity=0.503  Sum_probs=285.8

Q ss_pred             chhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcC--CCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074        326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQ--NGKSTISNDGATIMKLLDIVHPAAKTLVD  403 (632)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~--~g~~~ITnDG~tIlk~l~i~hP~akll~~  403 (632)
                      .|+.+++++..+++|+++|++.+.|+.+++|+|+|||||+||+||++..  .|.+.+||||+|||+++.+++|+||+|++
T Consensus         2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~   81 (527)
T KOG0363|consen    2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD   81 (527)
T ss_pred             ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence            4678999999999999999999999999999999999999999999974  57899999999999999999999999999


Q ss_pred             HHHhccccc----------------------------------------------------ccCCchhhHHHHHHHHhhh
Q psy17074        404 IAKSQDAEI----------------------------------------------------QKSDSGEYRGLLEKCAATA  431 (632)
Q Consensus       404 ~a~~q~~~~----------------------------------------------------~~~~~~~~~~~L~~va~t~  431 (632)
                      .++.||+++                                                    +..+....+++|.++|+|.
T Consensus        82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTT  161 (527)
T KOG0363|consen   82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTT  161 (527)
T ss_pred             cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Confidence            999999999                                                    0112233588999999999


Q ss_pred             cCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074        432 LSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI  511 (632)
Q Consensus       432 l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~  511 (632)
                      |+||+++++.++|++|+++|+.++.++-|++.|.|+|..||++.||++-+|+++++.+-.    .+|++++||+||+-+.
T Consensus       162 L~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIANT  237 (527)
T KOG0363|consen  162 LSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIANT  237 (527)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEecC
Confidence            999999999999999999999999988899999999999999999999999999998764    3799999999999999


Q ss_pred             cchhhhcc-CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074        512 ELELKAER-DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR  590 (632)
Q Consensus       512 ~Le~~~~~-~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r  590 (632)
                      +++..+.+ +.+.|.+++...+..+...|++.|+..+++|.+.|+|++|..+-|.++..++|...||+++.....+-+||
T Consensus       238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiER  317 (527)
T KOG0363|consen  238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIER  317 (527)
T ss_pred             CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHH
Confidence            99997766 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+.+||+.++++|++++...||+|+.+++.-||+++++.|+|
T Consensus       318 LalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSG  359 (527)
T KOG0363|consen  318 LALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSG  359 (527)
T ss_pred             HhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecc
Confidence            999999999999999999999999999999999999999987

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=1.7e-48  Score=436.13  Aligned_cols=265  Identities=23%  Similarity=0.397  Sum_probs=248.0

Q ss_pred             cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHHHHHH
Q psy17074         37 KKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTMK  111 (632)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~~ia~  111 (632)
                      +.+.++.++++++++.++++|+++++++++++++.|+||||++++|     ++.+++||.++||.+++++++++|+|||+
T Consensus       237 ~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~  316 (515)
T cd03338         237 DMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICK  316 (515)
T ss_pred             ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999998     89999999999999999999999999999


Q ss_pred             HhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCC
Q psy17074        112 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH  190 (632)
Q Consensus       112 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~  190 (632)
                      +|||+++++++++++++||+|+.|++.+++++++++|++|.+ +++|||+|||+|+.+++|+||+++||++++++++++|
T Consensus       317 ~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~  396 (515)
T cd03338         317 TIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKR  396 (515)
T ss_pred             HHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999987 6999999999999999999999999999999999999


Q ss_pred             eEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccc
Q psy17074        191 AVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIR  266 (632)
Q Consensus       191 ~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G  266 (632)
                      ++|||||++|++++.+|++++ ..+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.  +..+|
T Consensus       397 ~vvpGGG~~e~~ls~~l~~~~~~~~~~------~~~~~~~~-a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G  469 (515)
T cd03338         397 ALIPGGGAPEIEIALQLSEWARTLTGV------EQYCVRAF-ADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAG  469 (515)
T ss_pred             CEEECCCHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccc
Confidence            999999999999999999986 33444      45577887 999999999998 999999999999988764  33479


Q ss_pred             cccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        267 LDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       267 ~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      ||+  .+|.++||.+.|||||+   ++++++|+++|+++||+|++|.
T Consensus       470 ~d~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~  514 (515)
T cd03338         470 INV--RKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL  514 (515)
T ss_pred             eec--cCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence            999  99999999999999999   8999999999999999999875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=1.9e-48  Score=435.01  Aligned_cols=266  Identities=21%  Similarity=0.365  Sum_probs=248.9

Q ss_pred             ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHHHHH
Q psy17074         36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRTM  110 (632)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~~ia  110 (632)
                      .+.+.++.++++++++.++++|+++++++++++.+.|+|||+|+++|     ++.+++||.++||.+++++++++|+|||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa  316 (517)
T TIGR02342       237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFIC  316 (517)
T ss_pred             ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999     9999999999999999999999999999


Q ss_pred             HHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074        111 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN  189 (632)
Q Consensus       111 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~  189 (632)
                      ++|||+++++++++++.+||+|+.|++.+++++.++++.+|++ +++|||+|||+|+.+++|++|+++||++++++++++
T Consensus       317 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~  396 (517)
T TIGR02342       317 KTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKK  396 (517)
T ss_pred             HHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999987 489999999999999999999999999999999999


Q ss_pred             CeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcc
Q psy17074        190 HAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEI  265 (632)
Q Consensus       190 ~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~  265 (632)
                      +++|||||++||++|.+|++++. .++.      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.  +..+
T Consensus       397 ~~~VpGGGa~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~  469 (517)
T TIGR02342       397 RGLIPGGGAPEIEIAIKLSKLARTMKGV------ESYCVRAF-ADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYA  469 (517)
T ss_pred             CCEEECcCHHHHHHHHHHHHHHhcCCcH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999863 3444      45677888 999999999998 999999999999988764  2237


Q ss_pred             ccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        266 RLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       266 G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      |||.  .+|.++||.+.|||||+   ++++++|+++|+++||+|++|.
T Consensus       470 Gid~--~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~  515 (517)
T TIGR02342       470 GISV--RKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVF  515 (517)
T ss_pred             ceec--CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceee
Confidence            9999  99999999999999999   8999999999999999999885

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=1.9e-48  Score=436.09  Aligned_cols=269  Identities=51%  Similarity=0.837  Sum_probs=252.0

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      ...+++.++.++++++++.+.+.|++++.++++++++.|++||+++++|+|.+++||.++||++++++++++|+|||++|
T Consensus       243 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t  322 (522)
T cd03340         243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT  322 (522)
T ss_pred             CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence            34446678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074        114 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV  193 (632)
Q Consensus       114 Ga~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv  193 (632)
                      ||++++++++++++.||+|++|+++++|+++|++|++|..+++|||+|||+|+.+++|.||+++||++++++++++|++|
T Consensus       323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vv  402 (522)
T cd03340         323 GGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVV  402 (522)
T ss_pred             CCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---Cccccc
Q psy17074        194 AGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---AEIRLD  268 (632)
Q Consensus       194 pGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---~~~G~d  268 (632)
                      ||||++|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+   ..+|||
T Consensus       403 pGGG~~E~~ls~~l~~~~~~~~~~------~~~~~~~f-a~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid  475 (522)
T cd03340         403 AGGGAIEMELSKYLRDYSRTIAGK------QQLVINAF-AKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVD  475 (522)
T ss_pred             ECcCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeee
Confidence            9999999999999999863 3444      45577888 999999999998 9999999999999987743   237999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      .  .+|.++||.+.|||||+   ++++++|+++|+++||+|++|..
T Consensus       476 ~--~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~  519 (522)
T cd03340         476 I--NNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN  519 (522)
T ss_pred             C--CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence            9  99999999999999999   89999999999999999999854

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=7.6e-48  Score=429.75  Aligned_cols=264  Identities=25%  Similarity=0.377  Sum_probs=249.2

Q ss_pred             cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074         39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM  118 (632)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii  118 (632)
                      ++++.+++++++..+.+.|++++.++++.|++.|++++++++.|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus       244 ~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii  323 (519)
T TIGR02341       244 GSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIV  323 (519)
T ss_pred             CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074        119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA  198 (632)
Q Consensus       119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa  198 (632)
                      ++++++++++||+|+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++|||++++++++++++||||||
T Consensus       324 ~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa  403 (519)
T TIGR02341       324 STFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGC  403 (519)
T ss_pred             cccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCC--ccccccccccc
Q psy17074        199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNA--EIRLDSVEEYQ  274 (632)
Q Consensus       199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d~~~~~~  274 (632)
                      +|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.+.  .+|||.  .+|
T Consensus       404 ~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g  474 (519)
T TIGR02341       404 SEMLMSKAVAVEAQKVPGK------EALAVEAF-ARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDM--EEG  474 (519)
T ss_pred             HHHHHHHHHHHHhhcCCCh------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceec--CCC
Confidence            99999999998863 3444      45577888 999999999998 99999999999998876432  379999  999


Q ss_pred             hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      +++||.+.|||||+   ++++++|+++|+++|++|++|..
T Consensus       475 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  514 (519)
T TIGR02341       475 EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKA  514 (519)
T ss_pred             cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence            99999999999999   89999999999999999999865

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=1.1e-47  Score=430.86  Aligned_cols=269  Identities=29%  Similarity=0.430  Sum_probs=248.3

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      .....+.++.++++.+++.+.++|++++.+.+++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus       240 ~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~t  319 (536)
T TIGR02340       240 QKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKAT  319 (536)
T ss_pred             CcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCC------CCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074        114 GGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI  187 (632)
Q Consensus       114 Ga~ii~~l~~l------~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~  187 (632)
                      ||++++++.++      ++.+||+|++|+++++++++|++|++|.++.+|||+|||+|+.+++|++|+++|||+++++++
T Consensus       320 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~  399 (536)
T TIGR02340       320 GGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTL  399 (536)
T ss_pred             CCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999987544      455699999999999999999999999988999999999999999999999999999999999


Q ss_pred             hCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---
Q psy17074        188 RNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---  262 (632)
Q Consensus       188 ~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---  262 (632)
                      ++|++|||||++|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+   
T Consensus       400 ~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~------~~~~~~~f-a~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~  472 (536)
T TIGR02340       400 ESNSVVPGGGAVETALSIYLENFATTLGSR------EQLAIAEF-AEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQL  472 (536)
T ss_pred             cCCCEEECCCHHHHHHHHHHHHHhhhCCCh------hHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCc
Confidence            9999999999999999999998863 3344      45677888 999999999998 9999999999999876642   


Q ss_pred             -------CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        263 -------AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       263 -------~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                             ..+|||+  .+|.++||.+.|||||+   .++|+.|+++|+++|++|++|..
T Consensus       473 ~~~~~~~~~~Gid~--~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~  529 (536)
T TIGR02340       473 KPEKKHLKWYGLDL--SNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKL  529 (536)
T ss_pred             ccccccCceEeEEc--cCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence                   2379999  99999999999999999   88999999999999999999855

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=100.00  E-value=9.6e-48  Score=430.06  Aligned_cols=269  Identities=20%  Similarity=0.341  Sum_probs=250.5

Q ss_pred             cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074         35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  114 (632)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG  114 (632)
                      +.+++.++.++++.++..+.+.|+++++++++++++.|+||||++++|++.+++||.++||.++++++..+|+|||.+||
T Consensus       242 ~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tG  321 (531)
T TIGR02346       242 TTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVG  321 (531)
T ss_pred             cccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHC
Confidence            44557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074        115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK-NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV  193 (632)
Q Consensus       115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv  193 (632)
                      |+++++++++++++||+|++|++..+++++|.+|.+|. .+++|||+|||+|+.+++|+||+++|||+++++++++|++|
T Consensus       322 a~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vV  401 (531)
T TIGR02346       322 ATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFL  401 (531)
T ss_pred             CEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999999999999999999999887 58999999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcccccc
Q psy17074        194 AGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDS  269 (632)
Q Consensus       194 pGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~  269 (632)
                      ||||++||++|.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|.  +..+|||.
T Consensus       402 pGGG~~e~~ls~~L~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~  474 (531)
T TIGR02346       402 PGAGATEIELALRLKKYANKLPGL------DQYAIKKF-AEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDI  474 (531)
T ss_pred             ECcCHHHHHHHHHHHHHhccCCCH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceee
Confidence            9999999999999999863 3444      45567887 999999999998 999999999999987763  33479999


Q ss_pred             ccccch--hHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        270 VEEYQK--VVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       270 ~~~~~~--~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                        .+|.  ++||.+.|||||+   +++|++|+++|+++||+|++|...
T Consensus       475 --~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  520 (531)
T TIGR02346       475 --EAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAK  520 (531)
T ss_pred             --eCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence              9999  5999999999999   899999999999999999999754

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-47  Score=418.52  Aligned_cols=295  Identities=35%  Similarity=0.481  Sum_probs=271.0

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      +..+.+|.++|..|+.|++.|+++|||||||+||||||+++.|+|+|||||+|||++|+++||.|+|++++|++||+++ 
T Consensus         3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G   82 (524)
T COG0459           3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG   82 (524)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence            4567789999999999999999999999999999999999977999999999999999999999999999999999999 


Q ss_pred             -------------------------ccCCc----------------------hhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 -------------------------QKSDS----------------------GEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 -------------------------~~~~~----------------------~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                               +|...                      ..+.... +++.|+++||...++ ++|+
T Consensus        83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~~~-~~i~  160 (524)
T COG0459          83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSANSD-EEIG  160 (524)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeeccCh-HHHH
Confidence                                     11100                      0011111 678899999987666 9999


Q ss_pred             HHHHHHHHHhcc-cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc-eeecCceEEEecccchhhhccCCce
Q psy17074        446 KMVVDAVMSLDD-LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP-KTYKNPKIALLNIELELKAERDNAE  523 (632)
Q Consensus       446 ~li~~A~~~v~~-~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~-~~~~n~kIll~~~~Le~~~~~~~~~  523 (632)
                      +++++|+.+|++ +.|++.|.+++..||+..+|++++||+||++|.+|+|  || +.++||+|++++++|++.+++.+..
T Consensus       161 ~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~~l~~e  238 (524)
T COG0459         161 ELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKPELPLE  238 (524)
T ss_pred             HHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccccCcce
Confidence            999999999984 2377999999999999999999999999999998886  89 8999999999999999999999999


Q ss_pred             EEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEEeCCccHHHHHHHHHCCcEEEecCCchhH-HHHHHHcCCeEe
Q psy17074        524 IRLDSVEEYQKVVDAEW-KILYEKLDKIHASGAQ-VVLSKLPIGDVATQYFADRDMFCAGRVPEEDL-KRTMKACGGAVM  600 (632)
Q Consensus       524 v~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~gv~-vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L-~rIa~~tGa~ii  600 (632)
                      +.++++++|..|.++|+ +.+..+++++.+.|.+ +++++++|+|.+++||.+.+|++++++.++++ ++|++++||+++
T Consensus       239 ~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v  318 (524)
T COG0459         239 IVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIV  318 (524)
T ss_pred             eEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEE
Confidence            99999999999999999 9999999999999999 99999999999999999999999999999999 899999999999


Q ss_pred             ecccCCCCCCCee--eeEEEEEEEcCeEEEEecC
Q psy17074        601 TTAHDLNDSVLGT--CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       601 ~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~  632 (632)
                      +.++++++..+|.  |+.|++..+|++.+++|++
T Consensus       319 ~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~  352 (524)
T COG0459         319 SVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQE  352 (524)
T ss_pred             eecccCceeecCccccceEEEeeccchhhhhhhh
Confidence            9999999999999  9999999999999998874

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=4.9e-47  Score=420.11  Aligned_cols=258  Identities=29%  Similarity=0.562  Sum_probs=237.9

Q ss_pred             hcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcc
Q psy17074        330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQD  409 (632)
Q Consensus       330 ~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~  409 (632)
                      +++++.+.+.|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~   83 (480)
T cd03337           4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD   83 (480)
T ss_pred             eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccc
Q psy17074        410 AEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       410 ~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +++                                                  .+.+. .+.+.|.++++|+++||+.+.
T Consensus        84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~l~~i~~t~l~sK~~~~  162 (480)
T cd03337          84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDV-NDRAQMLKIIKSCIGTKFVSR  162 (480)
T ss_pred             HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHhccCcchh
Confidence            999                                                  01111 256779999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcc-------cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecc
Q psy17074        440 QKGFFSKMVVDAVMSLDD-------LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI  511 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~-------~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~  511 (632)
                      |.+.|++++++|+..++.       ++|++ +|+|++++||+..||++++|++|++++.|+   +||++++||+|++++|
T Consensus       163 ~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~---~m~~~~~n~kIlll~~  239 (480)
T cd03337         163 WSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP---KMRRRIENPRIVLLDC  239 (480)
T ss_pred             HHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC---CCCcEecCCCEEEEec
Confidence            999999999999999963       24443 599999999999999999999999999987   4899999999999999


Q ss_pred             cchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074        512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRT  591 (632)
Q Consensus       512 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rI  591 (632)
                      +|++                                         ||||+++|++.+++||.++||++++++++++|+||
T Consensus       240 ~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rI  278 (480)
T cd03337         240 PLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRI  278 (480)
T ss_pred             Ccce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence            9875                                         99999999999999999999999999999999999


Q ss_pred             HHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        592 MKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       592 a~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++|||+++++++++++++||+ |+.++++++|+++|+||+|
T Consensus       279 a~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~  320 (480)
T cd03337         279 ARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITE  320 (480)
T ss_pred             HHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEc
Confidence            9999999999999999999999 7888889999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=2.5e-47  Score=426.58  Aligned_cols=268  Identities=49%  Similarity=0.805  Sum_probs=251.0

Q ss_pred             cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074         35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  114 (632)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG  114 (632)
                      ..+.+..+.++++++++.+.+.|++++.++++++++.|++||+|+++|++.+++||.++||+++++++..+++++|++||
T Consensus       245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tg  324 (522)
T TIGR02345       245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACG  324 (522)
T ss_pred             ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence            33456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Q psy17074        115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVA  194 (632)
Q Consensus       115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvp  194 (632)
                      |+++++++++++++||+|+.|+++++++++|++|+||+++++|||+|||+|+.+++|.+|+++|||++++++++++++||
T Consensus       325 a~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvp  404 (522)
T TIGR02345       325 GSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVA  404 (522)
T ss_pred             CeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence            99999999999999999999999999999999999999899999999999999999999999999999999999988999


Q ss_pred             cCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccc
Q psy17074        195 GGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSV  270 (632)
Q Consensus       195 GGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~  270 (632)
                      |||++|++++.+|++++ ..+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+..|..  ..+|||. 
T Consensus       405 GGG~~e~~ls~~l~~~~~~~~~~------~~~~i~~~-a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~-  476 (522)
T TIGR02345       405 GGGAIEMELSKILREHSKKIDGK------QQLIIEAF-AKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDI-  476 (522)
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeC-
Confidence            99999999999999886 33444      45577887 999999999998 9999999999999886642  2379999 


Q ss_pred             cccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        271 EEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       271 ~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                       .+|+|.||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       477 -~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  519 (522)
T TIGR02345       477 -NTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN  519 (522)
T ss_pred             -CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence             99999999999999999   89999999999999999999854

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0360|consensus

Probab=100.00  E-value=4.7e-47  Score=391.27  Aligned_cols=295  Identities=34%  Similarity=0.526  Sum_probs=275.2

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      ++++.+|..+|..|..|+..++++|++||||-|+|||++++.|++.+||||+|||+.+.++||++|+|+++++.|++++ 
T Consensus        11 ~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evg   90 (545)
T KOG0360|consen   11 KGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVG   90 (545)
T ss_pred             cCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhcccccc
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -------------------------c-------------------------cCCchhhHHHHHHHHhhhcCCccccchhh
Q psy17074        413 -------------------------Q-------------------------KSDSGEYRGLLEKCAATALSSKLIHQQKG  442 (632)
Q Consensus       413 -------------------------~-------------------------~~~~~~~~~~L~~va~t~l~sK~~~~~~~  442 (632)
                                               +                         +++ ...++.|.++++|+++||++....+
T Consensus        91 Dgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd-~lg~~~Lin~~ktsmsSK~i~~ds~  169 (545)
T KOG0360|consen   91 DGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVD-SLGTQILINLAKTSMSSKIIGMDSD  169 (545)
T ss_pred             CCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehh-hcchHHHHHHHHhhhcceecccchH
Confidence                                     0                         111 1246789999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-------ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchh
Q psy17074        443 FFSKMVVDAVMSLD-------DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL  515 (632)
Q Consensus       443 ~l~~li~~A~~~v~-------~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~  515 (632)
                      +|++++++|++.+.       ..++++.++|.|.+|++..||.++.|+.++....+.   .||.++.|+||+++|+.|+.
T Consensus       170 ~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq---~m~~~i~~~Kiacld~~Lqk  246 (545)
T KOG0360|consen  170 FFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQ---MMPLRIKNAKIACLDFTLQK  246 (545)
T ss_pred             HHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhh---ccccccccceeeeEeccccc
Confidence            99999999999875       246779999999999999999999999999988775   48999999999999999999


Q ss_pred             hhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHc
Q psy17074        516 KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  595 (632)
Q Consensus       516 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~t  595 (632)
                      .+......+.+.+|.+++++.+.|....++.+++|...|+|||+++++|||+++.||..+|+++|+|++++||++|+++|
T Consensus       247 ~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakat  326 (545)
T KOG0360|consen  247 TKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKAT  326 (545)
T ss_pred             ccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecccC------CCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        596 GGAVMTTAHD------LNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       596 Ga~ii~~l~~------l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+++++++.+      +.++.+|+|+.|.+.+||+|.++++.|
T Consensus       327 Gat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg  369 (545)
T KOG0360|consen  327 GATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKG  369 (545)
T ss_pred             CCeeeehhhccccccccChhhccchhHHHHHhcccceeEEecc
Confidence            9999999874      457789999999999999999999865

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=3.6e-45  Score=404.41  Aligned_cols=250  Identities=27%  Similarity=0.444  Sum_probs=229.6

Q ss_pred             CCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc------
Q psy17074        339 QGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI------  412 (632)
Q Consensus       339 ~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~------  412 (632)
                      .+.+++..|+.||..|++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++      
T Consensus         5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt   84 (472)
T cd03341           5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL   84 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             --------------------c------------------------c-CCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074        413 --------------------Q------------------------K-SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM  447 (632)
Q Consensus       413 --------------------~------------------------~-~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l  447 (632)
                                          +                        + .+...+.+.|.++++|+++||..+ +.++|+++
T Consensus        85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l  163 (472)
T cd03341          85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPL  163 (472)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHH
Confidence                                0                        1 111124567899999999999875 78999999


Q ss_pred             HHHHHHHhc----ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCce
Q psy17074        448 VVDAVMSLD----DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAE  523 (632)
Q Consensus       448 i~~A~~~v~----~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~  523 (632)
                      +++|+..++    +.+++++|+|++++||+..||++++|++|++.+.     .+++.++||+|++++++|++        
T Consensus       164 ~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~--------  230 (472)
T cd03341         164 VAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI--------  230 (472)
T ss_pred             HHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC--------
Confidence            999999986    3578899999999999999999999999987653     24588999999999999985        


Q ss_pred             EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecc
Q psy17074        524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA  603 (632)
Q Consensus       524 v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l  603 (632)
                                                    |++|||++++|++.+++||.++||++++++++++|+|||++|||++++++
T Consensus       231 ------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~  280 (472)
T cd03341         231 ------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRL  280 (472)
T ss_pred             ------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence                                          89999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        604 HDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       604 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++||+|++|+++++|+++|++|++
T Consensus       281 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  309 (472)
T cd03341         281 GAPTPEEIGYCDSVYVEEIGDTKVVVFRQ  309 (472)
T ss_pred             ccCCHhHCCCceEEEEEEECCeeEEEEEc
Confidence            99999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=100.00  E-value=9.8e-45  Score=401.47  Aligned_cols=251  Identities=44%  Similarity=0.638  Sum_probs=235.0

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc----
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI----  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~----  412 (632)
                      ..++.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++||+++    
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT   82 (464)
T cd00309           3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT   82 (464)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence            3467899999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ----------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074        413 ----------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSK  446 (632)
Q Consensus       413 ----------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~  446 (632)
                                                                    .+.+ ..+.+.|.++++|+++||+.+.|+++|++
T Consensus        83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~-~~~~~~l~~ia~tsl~sK~~~~~~~~l~~  161 (464)
T cd00309          83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPID-VEDREELLKVATTSLNSKLVSGGDDFLGE  161 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccC-CCCHHHHHHHhHhcccccccccchHHHHH
Confidence                                                          0111 23567899999999999999999999999


Q ss_pred             HHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCce
Q psy17074        447 MVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAE  523 (632)
Q Consensus       447 li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~  523 (632)
                      ++++|+..++.   .++.+.|+|++++||++.||++++|++|++++.+++   |++.++||+|++++++|++        
T Consensus       162 l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~---m~~~~~n~~Ili~~~~Le~--------  230 (464)
T cd00309         162 LVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY---MPKRLENAKILLLDCKLEY--------  230 (464)
T ss_pred             HHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCC---CceeecCceEEEEecCcce--------
Confidence            99999999975   466799999999999999999999999999999986   6899999999999999985        


Q ss_pred             EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecc
Q psy17074        524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA  603 (632)
Q Consensus       524 v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l  603 (632)
                                                       ||+++++|++.+++||.++||++|+++++++|+|||++|||++++++
T Consensus       231 ---------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~  277 (464)
T cd00309         231 ---------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRL  277 (464)
T ss_pred             ---------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccc
Confidence                                             99999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        604 HDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       604 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++++++++|+|+.|+++++|+++|++|++
T Consensus       278 ~~~~~~~lG~~~~v~~~~~g~~~~~~~~~  306 (464)
T cd00309         278 EDLTPEDLGTAGLVEETKIGDEKYTFIEG  306 (464)
T ss_pred             ccCCcccCccccEEEEEEEcCeeEEEEEe
Confidence            99999999999999999999999999964

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=2.3e-45  Score=406.91  Aligned_cols=229  Identities=23%  Similarity=0.437  Sum_probs=215.1

Q ss_pred             cEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCC
Q psy17074         74 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKN  153 (632)
Q Consensus        74 ~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~  153 (632)
                      +||||+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++.+++++|++|++|.+
T Consensus       247 ~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~  326 (484)
T cd03342         247 SVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN  326 (484)
T ss_pred             EEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeecc
Q psy17074        154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISP  232 (632)
Q Consensus       154 ~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a  232 (632)
                      ++.|||+|||+|+.+++|+||+++|||+++++++++|++||||||+|++++.+|++++. .+++      +++++++| +
T Consensus       327 ~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~------~~~~i~~~-a  399 (484)
T cd03342         327 PKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGK------AKLGVQAF-A  399 (484)
T ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-H
Confidence            99999999999999999999999999999999999999999999999999999999873 3444      45677888 9


Q ss_pred             ccccccccccc-CCCCchhhHHHHHHhccC--CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccc
Q psy17074        233 DGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIG  306 (632)
Q Consensus       233 ~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~  306 (632)
                      +||+.||++|+ |||+|+.+++.+|+..|.  +..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|
T Consensus       400 ~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~--~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID  477 (484)
T cd03342         400 DALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDL--DTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVD  477 (484)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeC--CCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999998 999999999999987663  22379999  99999999999999999   899999999999999999


Q ss_pred             ccccc
Q psy17074        307 DVATQ  311 (632)
Q Consensus       307 ~ii~~  311 (632)
                      ++|..
T Consensus       478 ~ii~~  482 (484)
T cd03342         478 EIIRA  482 (484)
T ss_pred             Hhhhc
Confidence            98753

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0364|consensus

Probab=100.00  E-value=1.1e-45  Score=377.74  Aligned_cols=304  Identities=26%  Similarity=0.496  Sum_probs=285.6

Q ss_pred             cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      +.|...+..++.+++|..+...|++|+++++|+++|||||+.|.||+.++.|.+..||||..|+++|++.||+|+.++++
T Consensus         2 ~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel   81 (527)
T KOG0364|consen    2 QAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIEL   81 (527)
T ss_pred             CCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhh
Confidence            45666778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCC
Q psy17074        405 AKSQDAEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSS  434 (632)
Q Consensus       405 a~~q~~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~s  434 (632)
                      +++||+++                                                  .+++. .+...+.++.++++.+
T Consensus        82 ~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~-~~~~km~~vi~~~v~t  160 (527)
T KOG0364|consen   82 SRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDV-KDQAKMLRVINSSVGT  160 (527)
T ss_pred             hhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCc-ccHHHHHhhhhhhhhh
Confidence            99999998                                                  11221 2456788899999999


Q ss_pred             ccccchhhHHHHHHHHHHHHhcc----cCCC-CcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074        435 KLIHQQKGFFSKMVVDAVMSLDD----LLPL-NMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL  509 (632)
Q Consensus       435 K~~~~~~~~l~~li~~A~~~v~~----~~~~-~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~  509 (632)
                      |+.+.|.+.++++..+|+..|+.    .+|+ .+.++.|++||.+.+|++++|+.++++..||.   |.+.++||+|.|+
T Consensus       161 k~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk---mrr~IenprivLl  237 (527)
T KOG0364|consen  161 KFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK---MRRAIENPRIVLL  237 (527)
T ss_pred             hhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH---HHHHhhcCcEEEe
Confidence            99999999999999999999983    3776 78999999999999999999999999999994   7899999999999


Q ss_pred             cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074        510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK  589 (632)
Q Consensus       510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~  589 (632)
                      ||+|+|.+.++.+++.+.-.+++..+++-|++|+..+++.|....++||++.++++|.++|||.+.||.++++.++.|..
T Consensus       238 D~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~  317 (527)
T KOG0364|consen  238 DCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNN  317 (527)
T ss_pred             cCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||+++|||+++++.+|+.+.+.|+ |+.|++.++|+++|+||.+
T Consensus       318 ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~  361 (527)
T KOG0364|consen  318 RIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTD  361 (527)
T ss_pred             hhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhh
Confidence            999999999999999999999996 9999999999999999863

>KOG0361|consensus

Probab=100.00  E-value=1.6e-45  Score=370.75  Aligned_cols=268  Identities=52%  Similarity=0.852  Sum_probs=253.6

Q ss_pred             ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074         36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  115 (632)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa  115 (632)
                      |..+..++++++++++.+.+.||+.+.+++++|.++|+|||++.-.|.|.|-+||.+++|.+.+|++.+||.|+..++|+
T Consensus       249 EkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGG  328 (543)
T KOG0361|consen  249 EKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGG  328 (543)
T ss_pred             cccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEec
Q psy17074        116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG  195 (632)
Q Consensus       116 ~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpG  195 (632)
                      .+.++..++.+..||.|..|+++++|.++|-+|+||+..+.||++|||+-++.+.|.+|++|||++++|.++++..+|+|
T Consensus       329 si~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaG  408 (543)
T KOG0361|consen  329 SIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAG  408 (543)
T ss_pred             chhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--ccccccc
Q psy17074        196 GGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRLDSVE  271 (632)
Q Consensus       196 GGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~d~~~  271 (632)
                      ||++||++|+.|++|+ ...+++      |+.+.++ ++|||.||++|+ |||+|...++.+|+..|.+.+  +|+|-  
T Consensus       409 GGaiEMElSk~lRd~S~ti~gK~------q~~i~A~-akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi--  479 (543)
T KOG0361|consen  409 GGAIEMELSKYLRDYSRTIAGKQ------QLFINAY-AKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDI--  479 (543)
T ss_pred             CceeeehHHHHHHHhhcccCcHH------HHHHHHH-HHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeee--
Confidence            9999999999999999 445654      4466787 999999999998 999999999999999998665  58998  


Q ss_pred             ccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        272 EYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       272 ~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      .++.+.|+++.+||+|.   .+++.+|+++|+++|.+|+-|..-
T Consensus       480 ~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~  523 (543)
T KOG0361|consen  480 NTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNP  523 (543)
T ss_pred             cccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCC
Confidence            88999999999999999   899999999999999999877543

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=100.00  E-value=6.2e-44  Score=397.93  Aligned_cols=274  Identities=38%  Similarity=0.590  Sum_probs=254.6

Q ss_pred             HHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc---------------------
Q psy17074        354 VVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI---------------------  412 (632)
Q Consensus       354 la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~---------------------  412 (632)
                      |+++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++                     
T Consensus         1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l   80 (485)
T PF00118_consen    1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL   80 (485)
T ss_dssp             HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999998                     


Q ss_pred             -----ccCC---------------------chhhH-HHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEE
Q psy17074        413 -----QKSD---------------------SGEYR-GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIG  465 (632)
Q Consensus       413 -----~~~~---------------------~~~~~-~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~  465 (632)
                           +|..                     ..... +.|.++++|++++|+...|.++|++++++|+..+..++|+++++
T Consensus        81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~  160 (485)
T PF00118_consen   81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIK  160 (485)
T ss_dssp             HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEE
T ss_pred             hhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchh
Confidence                 0000                     00111 78999999999999999999999999999996554446778899


Q ss_pred             EEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHH
Q psy17074        466 IKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYE  545 (632)
Q Consensus       466 I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~  545 (632)
                      ++++.||+.+||++++|++|++++.++   +||++++||+|++++++|++.++ .++++.+++++++..+.++|++++++
T Consensus       161 i~~i~g~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~  236 (485)
T PF00118_consen  161 IIKIPGGSISDSELINGIVLDKGFSSP---NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKK  236 (485)
T ss_dssp             EEEEESSSSGGEEEESEEEESSSBSST---TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccccccccceeeecccccc---ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhcc
Confidence            999999999999999999999999987   48999999999999999999988 89999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCe
Q psy17074        546 KLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE  625 (632)
Q Consensus       546 ~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~  625 (632)
                      +++.+.+.|++|||++++|++.++++|.++||++++++++++|++||++|||++++++++++++++|+|++++++.+|++
T Consensus       237 ~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~  316 (485)
T PF00118_consen  237 ILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNK  316 (485)
T ss_dssp             HHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSS
T ss_pred             ccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             EEEEec
Q psy17074        626 RDTLNR  631 (632)
Q Consensus       626 ~~~~~~  631 (632)
                      +|++|+
T Consensus       317 ~~~~~~  322 (485)
T PF00118_consen  317 KYIFIE  322 (485)
T ss_dssp             EEEEEE
T ss_pred             cccccc
Confidence            999997

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-45  Score=402.70  Aligned_cols=274  Identities=24%  Similarity=0.332  Sum_probs=254.8

Q ss_pred             hccccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEEecCcChhHHHHHHHCCceEEEeCCchhH-HHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEW-KILYEKLDKIHASGAQ-VVLSKLPIGDVATQYFADRDMFCAGRVPEEDL-KRT  109 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~-~~i~~~~~~i~~~g~~-lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l-~~i  109 (632)
                      ..++..+..+.++++++|..|.++|+ +.+..++..+++.|+| +++++++|+|.+++||.+.+|++++++.++++ ++|
T Consensus       230 ~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l  309 (524)
T COG0459         230 IKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERL  309 (524)
T ss_pred             cccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHH
Confidence            34455558999999999999999999 9999999999999999 99999999999999999999999999999999 799


Q ss_pred             HHHhCCEEeccccCCCCCCCCC--cceEEEEEEcceEEEEEeccCC--CceEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy17074        110 MKACGGAVMTTAHDLNDSVLGT--CAVFDERQIGSERFNVFSGCKN--ARTCTIIVRGGAEQFLEETERSLHDAIMIVRR  185 (632)
Q Consensus       110 a~~tGa~ii~~l~~l~~~~lG~--~~~v~~~~i~~~~~~~~~~~~~--~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~  185 (632)
                      +.++||++++.++++++..+|.  |+.|++..+++..+++|.+|..  +++|||++||+|+.+++|.||+++|||+++|+
T Consensus       310 ~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~  389 (524)
T COG0459         310 AKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRA  389 (524)
T ss_pred             HHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  9999999999999999999986  88999999999999999999999999999999


Q ss_pred             HHhCCeEEecCChhHHHHHHHHhhh-ccCCC-ccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC
Q psy17074        186 TIRNHAVVAGGGAIEMELSKALRDY-SGLGD-KVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN  262 (632)
Q Consensus       186 a~~~~~vvpGGGa~e~~ls~~L~~~-~~~~~-~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~  262 (632)
                      ++++|++|||||++|++++.+|+++ ....+ ++      ++++++| ++|||.||++|+ |||+||.+++.+|++.|..
T Consensus       390 ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e------~~~i~~~-a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~  462 (524)
T COG0459         390 AVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDE------QLGIEAF-ARALEAPPRQLAENAGLDPIEVLSKLRSAHAT  462 (524)
T ss_pred             HHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHH------HHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHhcccC
Confidence            9999999999999999999999998 33333 54      5567888 999999999998 9999999999999998763


Q ss_pred             Cccccccccccchh-HhHHHHhHHHHH---HHHHHhhchhheecccccccccccccc
Q psy17074        263 AEIRLDSVEEYQKV-VDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFAD  315 (632)
Q Consensus       263 ~~~G~d~~~~~~~~-~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~  315 (632)
                      .++|||+  .+++| .||.+.|||||+   +++|++|+++|+++||+|++|.+.-..
T Consensus       463 ~~~G~d~--~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~  517 (524)
T COG0459         463 TNYGIDA--FTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE  517 (524)
T ss_pred             Cccceec--cCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence            4489999  99999 779999999999   999999999999999999999987543

>KOG0358|consensus

Probab=100.00  E-value=1.4e-44  Score=363.49  Aligned_cols=270  Identities=23%  Similarity=0.375  Sum_probs=252.5

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLK  107 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~  107 (632)
                      +++.|...++.++|+.+|+++++.|++|++++|++|.+.|+||+++|++|     +|.|+|||.+.+|+++.++.++|++
T Consensus       250 ~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRedie  329 (534)
T KOG0358|consen  250 PPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIE  329 (534)
T ss_pred             CCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHH
Confidence            67788899999999999999999999999999999999999999999987     8999999999999999999999999


Q ss_pred             HHHHHhCCEEeccccCCCCCCCCCcceEEEE-EEcceEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy17074        108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDER-QIGSERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRR  185 (632)
Q Consensus       108 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~-~i~~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~  185 (632)
                      .+|+.+|+.+++++++++++.||+++.+++. .-|+.+++.+.|+.+ +..+||++||++..+++|.+|++|||||++|+
T Consensus       330 fick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirC  409 (534)
T KOG0358|consen  330 FICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRC  409 (534)
T ss_pred             HHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHh
Confidence            9999999999999999999999999999776 345668999999887 78999999999999999999999999999999


Q ss_pred             HHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc
Q psy17074        186 TIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE  264 (632)
Q Consensus       186 a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~  264 (632)
                      .++.+.++||||+.|++++..|..++..    .-|+ +.+++++| ++|||.+|+||| |||++|..++.+|+..|.+.+
T Consensus       410 Lvk~r~li~GGGapEieia~~L~~~a~t----~eG~-~~yc~raf-A~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge  483 (534)
T KOG0358|consen  410 LVKKRALIAGGGAPEIEIALRLSALART----LEGV-EAYCWRAF-ADALEVIPYTLAENAGLNPIATVTELRNRHAQGE  483 (534)
T ss_pred             hhhccceecCCCCcchHHHHHHHHHHhh----hccc-hhHHHHHH-HHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC
Confidence            9999999999999999999999999842    2344 67789998 999999999998 999999999999999987664


Q ss_pred             --cccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        265 --IRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       265 --~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                        .|+|.  ..|...||.++.|+-|+   .++++.|.+.+.++|++|+|+.
T Consensus       484 ~~aGInV--Rkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~  532 (534)
T KOG0358|consen  484 KNAGINV--RKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVN  532 (534)
T ss_pred             cccceee--ecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcc
Confidence              69999  99999999999999999   8899999999999999999874

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=1.8e-44  Score=398.84  Aligned_cols=230  Identities=21%  Similarity=0.381  Sum_probs=216.0

Q ss_pred             CCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEecc
Q psy17074         72 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC  151 (632)
Q Consensus        72 g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~  151 (632)
                      |+||||++++|++.+++||.++||.+++++++.+|+|||++|||++++++++++++++|+|++|++.++|+++|++|.+|
T Consensus       231 g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~  310 (472)
T cd03341         231 GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN  310 (472)
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceee
Q psy17074        152 KN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHA  229 (632)
Q Consensus       152 ~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~  229 (632)
                      .+ +++|||+|||+|+.+++|.||+++|||+++++++++|++|||||++|++++.+|++++. .+++      +++++++
T Consensus       311 ~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~------~~~~~~~  384 (472)
T cd03341         311 KEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGL------EQYAIKK  384 (472)
T ss_pred             CCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCH------HHHHHHH
Confidence            87 89999999999999999999999999999999999999999999999999999999863 3444      4557788


Q ss_pred             eccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccccccccc--hhHhHHHHhHHHHH---HHHHHhhchhhee
Q psy17074        230 ISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEYQ--KVVDAEWKILYEKL---DKIHASGAQVVLS  301 (632)
Q Consensus       230 ~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~~--~~~d~~~~gI~Dp~---~~~l~~a~~va~~  301 (632)
                      | ++||+.||++|+ |||+|+.+++.+|+..|.+  ..+|||+  .+|  +|+||.+.|||||+   +++|++|+++|++
T Consensus       385 ~-a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~--~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~  461 (472)
T cd03341         385 F-AEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDI--ESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVT  461 (472)
T ss_pred             H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeec--cCCCCCccChhhccceecHHHHHHHHHHHHHHHHH
Confidence            7 999999999998 9999999999999876632  2479999  999  99999999999999   8999999999999


Q ss_pred             ccccccccc
Q psy17074        302 KLPIGDVAT  310 (632)
Q Consensus       302 ~l~~~~ii~  310 (632)
                      +||+|++|.
T Consensus       462 iL~id~ii~  470 (472)
T cd03341         462 VLRVDQIIM  470 (472)
T ss_pred             Hhhhcceee
Confidence            999999884

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0364|consensus

Probab=100.00  E-value=1.7e-44  Score=368.97  Aligned_cols=275  Identities=26%  Similarity=0.435  Sum_probs=260.5

Q ss_pred             hhccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHH
Q psy17074         32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK  111 (632)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~  111 (632)
                      +|.+...++.+++...+++.+.++-|++++..+++.|+...++||++.++++|.|++||.++||.+++++++.|..|+|+
T Consensus       242 eykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~  321 (527)
T KOG0364|consen  242 EYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIAR  321 (527)
T ss_pred             cCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhh
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCC
Q psy17074        112 ACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNH  190 (632)
Q Consensus       112 ~tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~  190 (632)
                      ++||+++++.+++.+.+.|+ |+.+++..+|+++|++|..|++|+.|||++||||..+++|.+|.++||+.++|+.+-+|
T Consensus       322 acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~P  401 (527)
T KOG0364|consen  322 ACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINP  401 (527)
T ss_pred             hcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence            99999999999999999995 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--ccc
Q psy17074        191 AVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRL  267 (632)
Q Consensus       191 ~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~  267 (632)
                      +++|||||+||++|+.|++.+..    ..|+ ++|+|.++ +.|||.+|++|+ |||.++...+..++..|.+..  +|+
T Consensus       402 klvPGGGAtEMAvs~~L~qksa~----~~GV-ekwPY~Av-a~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi  475 (527)
T KOG0364|consen  402 KLVPGGGATEMAVSHELRQKSAL----MTGV-EKWPYGAV-AGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGI  475 (527)
T ss_pred             cccCCccHHHHHHHHHHHHHHhh----ccch-hccchhhh-hcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecc
Confidence            99999999999999999986532    2456 89999998 999999999998 999999999999998887542  799


Q ss_pred             ccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074        268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA  314 (632)
Q Consensus       268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~  314 (632)
                      |.  ++|..+||.+.|+|+|.   .+..++|.++++++||+|.+++....
T Consensus       476 ~g--~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk  523 (527)
T KOG0364|consen  476 DG--ETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK  523 (527)
T ss_pred             cC--ceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence            99  99999999999999999   78999999999999999999988744

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=100.00  E-value=1e-43  Score=396.17  Aligned_cols=265  Identities=31%  Similarity=0.516  Sum_probs=249.4

Q ss_pred             ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074         38 KEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV  117 (632)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~i  117 (632)
                      .++++.++++++++.+.++|++++.++++++.+.|+|||+++++|++.++++|.++||.+++++++.+|++||++|||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~i  290 (485)
T PF00118_consen  211 FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASI  290 (485)
T ss_dssp             STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBE
T ss_pred             cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCCCcceEEEEEEcceEEEEEe--ccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEec
Q psy17074        118 MTTAHDLNDSVLGTCAVFDERQIGSERFNVFS--GCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG  195 (632)
Q Consensus       118 i~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~--~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpG  195 (632)
                      ++++++++++.+|+|+.++++.+++++|++|+  +|..+..+||+|||+|+.+++|.+|+++||++++++++++|++|||
T Consensus       291 i~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpG  370 (485)
T PF00118_consen  291 ISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPG  370 (485)
T ss_dssp             BSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEET
T ss_pred             ecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeec
Confidence            99999999988999999999999999999999  6888999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC-CCccccccccc
Q psy17074        196 GGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD-NAEIRLDSVEE  272 (632)
Q Consensus       196 GGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~-~~~~G~d~~~~  272 (632)
                      ||++|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++++|+..|. +..+|||.  .
T Consensus       371 GG~~e~~l~~~L~~~~~~~~~~------~~~~~~~~-a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~--~  441 (485)
T PF00118_consen  371 GGATELHLSKALRKYAKSLSGK------EQLAIEAF-ADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDL--D  441 (485)
T ss_dssp             TTHHHHHHHHHHHHHHHCSSSH------HHHHHHHH-HHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEET--T
T ss_pred             CcchhhhhhhhHHHhhhcccCc------hhhhHHHH-HHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCc--c
Confidence            99999999999988874 3344      34577888 999999999998 999999999999988553 23479999  9


Q ss_pred             cchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        273 YQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       273 ~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      +|++.||.+.|||||+   .++++.|+++|+++|++|++|..
T Consensus       442 ~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~  483 (485)
T PF00118_consen  442 TGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA  483 (485)
T ss_dssp             TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999   89999999999999999999875

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.3e-41  Score=379.76  Aligned_cols=259  Identities=17%  Similarity=0.281  Sum_probs=228.1

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||    .|+|++++|++||+++
T Consensus         5 ~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~   84 (542)
T PRK00013          5 IKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA   84 (542)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCccc
Confidence            457889999999999999999999999999999999999999999999999999999999    6999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+|+++      +++.|+
T Consensus        85 GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~------~~~~ls  158 (542)
T PRK00013         85 GDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISAN------GDEEIG  158 (542)
T ss_pred             CCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhccc------chHHHH
Confidence                                      0100                     01145668888888753      678999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      +++++|+..++.+   +.|+|.+..| ...+|++++|++|+++|.+|+|.    +|++.++||+|+++|+.+        
T Consensus       159 ~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i--------  226 (542)
T PRK00013        159 KLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI--------  226 (542)
T ss_pred             HHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc--------
Confidence            9999999998743   4588888777 77899999999999999999873    578999999999999964        


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecCC-----chhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v~-----~~~L~r  590 (632)
                           ++++++.           ++++.+++.|++|||++++|++.++++|..++      |++|++++     +++|+|
T Consensus       227 -----~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~  290 (542)
T PRK00013        227 -----SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLED  290 (542)
T ss_pred             -----CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHH
Confidence                 4666654           55999999999999999999999999999996      99999997     889999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||++|||++++     +++++++++||+|+.|++..   ++|++|+|
T Consensus       291 ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~  334 (542)
T PRK00013        291 IAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDG  334 (542)
T ss_pred             HHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeC
Confidence            99999999999     79999999999999999864   88998864

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=3e-43  Score=389.83  Aligned_cols=227  Identities=28%  Similarity=0.520  Sum_probs=212.3

Q ss_pred             EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCC
Q psy17074         75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKN  153 (632)
Q Consensus        75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~  153 (632)
                      ||+++++|++.|++||.++||++++++++++|+|||++|||++++++++++++.||+ |+.++++.+++++|++|++|.+
T Consensus       244 lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~  323 (480)
T cd03337         244 LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD  323 (480)
T ss_pred             EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC
Confidence            899999999999999999999999999999999999999999999999999999999 6788888889999999999999


Q ss_pred             CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeecc
Q psy17074        154 ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISP  232 (632)
Q Consensus       154 ~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a  232 (632)
                      +++|||+|||+|+.+++|.||+++||+++++++++++++|||||++||++|.+|++++. .+++      +++++++| +
T Consensus       324 ~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~------~~~~~~~~-a  396 (480)
T cd03337         324 PKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGV------EQWPYKAV-A  396 (480)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCH------HHHHHHHH-H
Confidence            99999999999999999999999999999999999999999999999999999998873 3444      45677888 9


Q ss_pred             ccccccccccc-CCCCchhhHHHHHHhccCCC---ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccc
Q psy17074        233 DGFEMQPKTYK-NPKIALLNIELELKAERDNA---EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPI  305 (632)
Q Consensus       233 ~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~---~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~  305 (632)
                      +||+.||++|+ |||+|+.+++.+|++.|...   .+|+|.  .+|.++||.+.|||||+   ++++++|+++|+++||+
T Consensus       397 ~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~--~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i  474 (480)
T cd03337         397 SALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDG--ETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRI  474 (480)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeec--cCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999998 99999999999998876432   379999  99999999999999999   89999999999999999


Q ss_pred             ccccc
Q psy17074        306 GDVAT  310 (632)
Q Consensus       306 ~~ii~  310 (632)
                      |++|.
T Consensus       475 d~ii~  479 (480)
T cd03337         475 DDIVS  479 (480)
T ss_pred             hheec
Confidence            99874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=2.4e-41  Score=377.55  Aligned_cols=258  Identities=17%  Similarity=0.250  Sum_probs=223.6

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||    +|+|++++|++||+++
T Consensus         5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~   84 (542)
T PRK12849          5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA   84 (542)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence            346789999999999999999999999999999999999999999999999999999999    8999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+|+.+      ++++|+
T Consensus        85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~------~~~~l~  158 (542)
T PRK12849         85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISAN------GDEEIG  158 (542)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcC------ChHHHH
Confidence                                      1100                     01145568888888743      679999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +++++|+..++.+   +.+.+.  .|++.+| +++++|++|+++|.+|+|.    +|++.++||+|+++|+.+       
T Consensus       159 ~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-------  226 (542)
T PRK12849        159 ELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI-------  226 (542)
T ss_pred             HHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc-------
Confidence            9999999998743   344454  6888876 7999999999999999874    588999999999999964       


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCCc-----hhHH
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVPE-----EDLK  589 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~~-----~~L~  589 (632)
                            ++++++.           ++++++.+.|++|||++++|++.|+++|.++      ||++|+++++     ++|+
T Consensus       227 ------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~  289 (542)
T PRK12849        227 ------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE  289 (542)
T ss_pred             ------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHH
Confidence                  4555554           4689999999999999999999999999999      9999999984     4599


Q ss_pred             HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||++++     +++++++++||+|+.|++.+   ++|++|+|
T Consensus       290 ~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g  334 (542)
T PRK12849        290 DIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDG  334 (542)
T ss_pred             HHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeC
Confidence            999999999999     68999999999999999854   88888864

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=7.8e-43  Score=389.87  Aligned_cols=240  Identities=14%  Similarity=0.155  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEE-----eCCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAG-----RVPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~-----~v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.++++++.+.|+||||++++|++.|+++|..|||      ++++     ++++++|+|||.+|||++++     +++
T Consensus       231 ~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~  310 (541)
T PRK12851        231 QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLE  310 (541)
T ss_pred             HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcC
Confidence            3588999999999999999999999999999999997      5555     59999999999999999999     789


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChh
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQ  167 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~  167 (632)
                      ++++++||+|+.|++.+   ++|+++++|.++                                   .++||+|||+|+.
T Consensus       311 ~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~  387 (541)
T PRK12851        311 NVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEV  387 (541)
T ss_pred             cCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence            99999999999996655   889999988764                                   3889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074        168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK  246 (632)
Q Consensus       168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG  246 (632)
                      +++|++|+++|||+++++++++| +|||||++|+++|..|++++...++      +++++++| ++||+.||++|+ |||
T Consensus       388 ~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~AL~~ip~~La~NaG  459 (541)
T PRK12851        388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETANGD------QRTGVEIV-RRALEAPVRQIAENAG  459 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcCCcH------HHHHHHHH-HHHHHHHHHHHHHhcC
Confidence            99999999999999999999998 9999999999999999988743444      45677888 999999999998 999


Q ss_pred             CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccc
Q psy17074        247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYF  313 (632)
Q Consensus       247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~  313 (632)
                      +|+.+++.+|++.|.  .+|||.  .+|+++||.+.|||||+   +++|++|+++|+++|++|++|...-
T Consensus       460 ~d~~~vl~~l~~~~~--~~G~d~--~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~  525 (541)
T PRK12851        460 AEGSVVVGKLREKPG--GYGFNA--ATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKP  525 (541)
T ss_pred             CCHHHHHHHHHhhCC--CeeeeC--CCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCC
Confidence            999999999988764  489999  99999999999999999   8999999999999999999997753

>cd03344 GroEL GroEL_like type I chaperonin

Probab=100.00  E-value=5.1e-41  Score=373.98  Aligned_cols=257  Identities=18%  Similarity=0.290  Sum_probs=225.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc-
Q psy17074        338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~-  412 (632)
                      .+|.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||    +|+|++++|++||+++ 
T Consensus         4 ~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~G   83 (520)
T cd03344           4 KFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAG   83 (520)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccC
Confidence            46788999999999999999999999999999999999999999999999999999999    8999999999999999 


Q ss_pred             -------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074        413 -------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFSK  446 (632)
Q Consensus       413 -------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~~  446 (632)
                                               +|..                     ...+.+.|.++|+|++++      +++|++
T Consensus        84 DGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~------~~~l~~  157 (520)
T cd03344          84 DGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANG------DEEIGE  157 (520)
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC------hHHHHH
Confidence                                     1110                     012466789999998764      589999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074        447 MVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       447 li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      ++++|+..++.+   +.|.+  ..||+..| +++++|++|++++.+|+|.    +|++.++||+|+++|+++        
T Consensus       158 lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l--------  224 (520)
T cd03344         158 LIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI--------  224 (520)
T ss_pred             HHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--------
Confidence            999999998743   34544  48999988 7999999999999999873    356789999999999995        


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEecC-----CchhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGRV-----PEEDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~v-----~~~~L~r  590 (632)
                           ++++++.           ++++.+.+.|+||||++++|++.++++|..+||      ++|+++     ++++|+|
T Consensus       225 -----~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~  288 (520)
T cd03344         225 -----SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLED  288 (520)
T ss_pred             -----CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHH
Confidence                 4555544           458999999999999999999999999999998      999988     7899999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||++|||++++     +++++++++||+|+.|++++   ++|++|+|
T Consensus       289 la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~  332 (520)
T cd03344         289 IAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGG  332 (520)
T ss_pred             HHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeC
Confidence            99999999999     78999999999999999977   78888864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PTZ00114 Heat shock protein 60; Provisional

Probab=100.00  E-value=3.8e-41  Score=377.73  Aligned_cols=258  Identities=19%  Similarity=0.285  Sum_probs=224.9

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhcccc
Q psy17074        336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAE  411 (632)
Q Consensus       336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~  411 (632)
                      +..++.+++..|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||    +|+|++++|++||++
T Consensus        16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e   95 (555)
T PTZ00114         16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK   95 (555)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence            4567789999999999999999999999999999999999999999999999999999999    899999999999999


Q ss_pred             c--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHH
Q psy17074        412 I--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFF  444 (632)
Q Consensus       412 ~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l  444 (632)
                      +                          +|..                     ...+.+.|.++|+|++++      ++.|
T Consensus        96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~------~~~l  169 (555)
T PTZ00114         96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANG------DVEI  169 (555)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCC------hHHH
Confidence            9                          0100                     011456789999988654      5789


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhcc
Q psy17074        445 SKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       445 ~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      ++++++|+..++.+   +  .|.+..|++..|| ++++|++|+++|.+|+|.    +|++.++||+|+++|++|+     
T Consensus       170 ~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-----  239 (555)
T PTZ00114        170 GSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-----  239 (555)
T ss_pred             HHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-----
Confidence            99999999998743   2  2666789999998 799999999999999883    5899999999999999976     


Q ss_pred             CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecC-----CchhH
Q psy17074        520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRV-----PEEDL  588 (632)
Q Consensus       520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v-----~~~~L  588 (632)
                              ++++           +.++++.+++.|+||||++++|++.++++|..++      |++|+++     ++++|
T Consensus       240 --------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l  300 (555)
T PTZ00114        240 --------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDIL  300 (555)
T ss_pred             --------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHH
Confidence                    3333           4566899999999999999999999999999986      9999985     56999


Q ss_pred             HHHHHHcCCeEeecc------cCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074        589 KRTMKACGGAVMTTA------HDLNDSVLGTCAVFDERQIGSERDTLNR  631 (632)
Q Consensus       589 ~rIa~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~  631 (632)
                      +|||++|||++++++      +++++++||+|++|++++   +++++|+
T Consensus       301 ~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~  346 (555)
T PTZ00114        301 QDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILT  346 (555)
T ss_pred             HHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEe
Confidence            999999999999997      888889999999999988   5555653

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=2.4e-42  Score=386.24  Aligned_cols=239  Identities=14%  Similarity=0.174  Sum_probs=218.7

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEEe-----CCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.++++++.+.|+||||++++|++.|+++|..|||      +++++     +++.+|+|||++|||++++     +++
T Consensus       231 ~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~  310 (544)
T PRK12850        231 QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLE  310 (544)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcc
Confidence            3589999999999999999999999999999999999      77665     8999999999999999999     789


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChh
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQ  167 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~  167 (632)
                      ++++++||+|+.|++.   .++|++|++|.++                                   ++|||+|||+|+.
T Consensus       311 ~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~  387 (544)
T PRK12850        311 NVTLDMLGRAKRVLIT---KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV  387 (544)
T ss_pred             cCCHHHcCCCcEEEEE---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHH
Confidence            9999999999999655   4789999988764                                   4899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074        168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK  246 (632)
Q Consensus       168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG  246 (632)
                      +++|++|+++|||+++++++++| +|||||++|++++..|+++...+++      +++++++| ++||+.||++|+ |||
T Consensus       388 ~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i~~~-a~Al~~ip~~La~NaG  459 (544)
T PRK12850        388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGLKGANAD------ETAGIDIV-RRALEEPLRQIATNAG  459 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhccCCChH------HHHHHHHH-HHHHHHHHHHHHHhcC
Confidence            99999999999999999999998 9999999999999999988433444      45677888 999999999998 999


Q ss_pred             CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +|+.+++.+|++.|.  .+|||+  .+|++.||.+.|||||+   .++|++|+++|+++|++|++|...
T Consensus       460 ~d~~~v~~~l~~~~~--~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~  524 (544)
T PRK12850        460 FEGSVVVGKVAELPG--NFGFNA--QTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEA  524 (544)
T ss_pred             CCHHHHHHHHHhhCC--CcceeC--CCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccC
Confidence            999999999988764  489999  99999999999999999   899999999999999999998765

>TIGR02348 GroEL chaperonin GroL

Probab=100.00  E-value=6.5e-41  Score=373.81  Aligned_cols=258  Identities=16%  Similarity=0.260  Sum_probs=223.1

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.+++..|+.|+..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||    +|+|++++|++||+++
T Consensus         4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~   83 (524)
T TIGR02348         4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA   83 (524)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence            346789999999999999999999999999999999999999999999999999999999    8999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+|+.+      ++++|+
T Consensus        84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~------~~~~l~  157 (524)
T TIGR02348        84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISAN------NDEEIG  157 (524)
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc------ChHHHH
Confidence                                      0100                     01145678888888743      578999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +++++|+..++.+   +.|.|.  .|+.. .+|++++|++|+++|.+|+|.    +|++.++||+|+++++.+       
T Consensus       158 ~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-------  225 (524)
T TIGR02348       158 SLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI-------  225 (524)
T ss_pred             HHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc-------
Confidence            9999999998743   345555  36666 669999999999999999873    478999999999999974       


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCCc-----hhHH
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVPE-----EDLK  589 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~~-----~~L~  589 (632)
                            ++++++           .++++.+++.|+||||++++|++.++++|..+      ||++|+++++     ++|+
T Consensus       226 ------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~  288 (524)
T TIGR02348       226 ------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE  288 (524)
T ss_pred             ------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence                  355554           56699999999999999999999999999997      8999999965     8999


Q ss_pred             HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||++++     +++++++++||+|+.|++..   +++++|+|
T Consensus       289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~  333 (524)
T TIGR02348       289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEG  333 (524)
T ss_pred             HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcC
Confidence            999999999999     89999999999999999875   78888864

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=2.5e-42  Score=386.91  Aligned_cols=240  Identities=14%  Similarity=0.184  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEe-----CCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGR-----VPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.++++.+.+.|+||||++++|++.|+++|..|      +|+++++     +++++|+|||++|||++++     +++
T Consensus       231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~  310 (545)
T PRK12852        231 QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLE  310 (545)
T ss_pred             HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcC
Confidence            48899999999999999999999999999999987      6888875     4599999999999999999     799


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEeccCC-----------------------------------CceEEEEecCCChh
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSGCKN-----------------------------------ARTCTIIVRGGAEQ  167 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~  167 (632)
                      ++++++||+|+.|++..   +++++++++..                                   ++++||+|||+|+.
T Consensus       311 ~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~  387 (545)
T PRK12852        311 NVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV  387 (545)
T ss_pred             CCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence            99999999999996554   78899998765                                   37899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCC
Q psy17074        168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPK  246 (632)
Q Consensus       168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG  246 (632)
                      +++|++|+++||+|++++++++| +|||||++|++++.+|++++...++      +++++++| ++||+.||++|+ |||
T Consensus       388 ~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~q~~i~~~-a~AL~~ip~~La~NaG  459 (545)
T PRK12852        388 EVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINNDNAD------VQAGINIV-LKALEAPIRQIAENAG  459 (545)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcCCcH------HHHHHHHH-HHHHHHHHHHHHHHcC
Confidence            99999999999999999999998 9999999999999999998744444      45677888 999999999998 999


Q ss_pred             CchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        247 IALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       247 ~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +|+.+++.+|++.| +..+|||+  .+|+++||.+.|||||+   +++|++|+++|+++|++|++|...
T Consensus       460 ~d~~~vl~~l~~~~-~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~  525 (545)
T PRK12852        460 VEGSIVVGKILENK-SETFGFDA--QTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAEL  525 (545)
T ss_pred             CCHHHHHHHHHhhc-CCCeeEeC--cCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence            99999999998767 45689999  99999999999999999   899999999999999999999874

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=3.1e-42  Score=384.74  Aligned_cols=238  Identities=16%  Similarity=0.185  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEeCC-----chhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.++++++.+.|+||||++++|++.|+++|..|      ||+++++++     +++|+|||.+|||++++     ++++
T Consensus       231 ~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~  310 (542)
T PRK12849        231 DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEE  310 (542)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCccc
Confidence            4667899999999999999999999999999999      899998776     55699999999999999     6899


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhh
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQF  168 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~  168 (632)
                      +++++||+|+.|++   ++++|+++++|.++                                   +.|||+|||+|+.+
T Consensus       311 ~~~~~LG~~~~v~~---~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~  387 (542)
T PRK12849        311 VTLDDLGRAKRVTI---TKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVE  387 (542)
T ss_pred             CCHHHCceeeEEEE---eeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Confidence            99999999999955   45889999988764                                   58999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCC
Q psy17074        169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKI  247 (632)
Q Consensus       169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~  247 (632)
                      ++|.+|+++|||+++++++++| +|||||++|+++|.+|++++...++      +++++++| ++||+.||++|+ |||+
T Consensus       388 l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~~~~g~------~~~~i~~~-a~Al~~ip~~La~NaG~  459 (542)
T PRK12849        388 LKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELAGLNGD------QAAGVEIV-RRALEAPLRQIAENAGL  459 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhhCCChH------HHHHHHHH-HHHHHHHHHHHHHHCCC
Confidence            9999999999999999999998 9999999999999999998743444      45677898 999999999998 9999


Q ss_pred             chhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        248 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       248 ~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      |+.+++.+|++.|.  .+|||.  .+|+++||.+.|||||+   .++|++|+++|+++|++|++|...
T Consensus       460 d~~~vi~~L~~~~~--~~G~d~--~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~  523 (542)
T PRK12849        460 DGSVVVAKVLELED--GFGFNA--ATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADK  523 (542)
T ss_pred             CHHHHHHHHHhhCC--CcceeC--CCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence            99999999988763  489999  99999999999999999   899999999999999999999764

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=3e-42  Score=384.84  Aligned_cols=238  Identities=16%  Similarity=0.189  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC------ceEEEeCC-----chhHHHHHHHhCCEEec-----cccCC
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHDL  124 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~------I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~l  124 (632)
                      +.++++++.+.|+||||++++|++.|+++|..|+      |+++++++     +++|+|||.+|||++++     +++++
T Consensus       232 l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~  311 (542)
T PRK00013        232 LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDA  311 (542)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccC
Confidence            5588999999999999999999999999999997      88888665     88999999999999999     79999


Q ss_pred             CCCCCCCcceEEEEEEcceEEEEEeccCCCc-----------------------------------eEEEEecCCChhhH
Q psy17074        125 NDSVLGTCAVFDERQIGSERFNVFSGCKNAR-----------------------------------TCTIIVRGGAEQFL  169 (632)
Q Consensus       125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~l  169 (632)
                      ++++||+|+.|++.   .++|++|++|.++.                                   .+||+|||+|+.++
T Consensus       312 ~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l  388 (542)
T PRK00013        312 TLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEM  388 (542)
T ss_pred             CHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence            99999999999654   58899999887754                                   78999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074        170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA  248 (632)
Q Consensus       170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~  248 (632)
                      +|++|+++|||+++++++++| +|||||++|+++|.+|+++....++      +++++++| ++||+.||++|+ |||+|
T Consensus       389 ~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i~~~-a~Al~~ip~~La~NaG~d  460 (542)
T PRK00013        389 KEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEALKGLNGD------EATGINIV-LRALEAPLRQIAENAGLE  460 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHhcCCChH------HHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            999999999999999999998 9999999999999999988433444      45677888 999999999998 99999


Q ss_pred             hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +.+++.+|+..| +..+|||.  .+|+++||.+.|||||+   +++|++|+++|+++|++|++|...
T Consensus       461 ~~~vl~~l~~~~-~~~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~  524 (542)
T PRK00013        461 GSVVVEKVKNGK-GKGYGYNA--ATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADK  524 (542)
T ss_pred             HHHHHHHHHhhc-CCCEeEeC--CCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999998877 45589999  99999999999999999   899999999999999999998764

>cd03344 GroEL GroEL_like type I chaperonin

Probab=100.00  E-value=7.4e-42  Score=380.72  Aligned_cols=236  Identities=16%  Similarity=0.192  Sum_probs=216.2

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc------eEEEe-----CCchhHHHHHHHhCCEEec-----cccCC
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKRTMKACGGAVMT-----TAHDL  124 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I------~~~~~-----v~~~~l~~ia~~tGa~ii~-----~l~~l  124 (632)
                      +.++++++.+.|+||||++++|++.|+++|..|||      .++++     +++++|+|||.+|||++++     +++++
T Consensus       230 l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~  309 (520)
T cd03344         230 LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDV  309 (520)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccC
Confidence            66678999999999999999999999999999999      66654     4899999999999999999     78899


Q ss_pred             CCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhH
Q psy17074        125 NDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFL  169 (632)
Q Consensus       125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l  169 (632)
                      ++++||+|+.|++.+   ++|+++++|..+                                   +.|||+|||+|+.++
T Consensus       310 ~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l  386 (520)
T cd03344         310 TLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVEL  386 (520)
T ss_pred             CHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHH
Confidence            989999999996654   789999988664                                   599999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074        170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA  248 (632)
Q Consensus       170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~  248 (632)
                      +|++|+++||++++++++++| +|||||++|+++|.+|++++...+.      +++++++| ++||+.||++|+ |||+|
T Consensus       387 ~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~Al~~ip~~La~NaG~d  458 (520)
T cd03344         387 KEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKALNGD------EKLGIEIV-RRALEAPLRQIAENAGVD  458 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhccCChH------HHHHHHHH-HHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998 9999999999999999998754444      55677898 999999999998 99999


Q ss_pred             hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      +.+++++|+..|.  .+|||.  .+|+++||.+.|||||+   .++|++|+++|+++|++|++|++
T Consensus       459 ~~~vi~~l~~~~~--~~G~d~--~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~~  520 (520)
T cd03344         459 GSVVVEKVLESPD--GFGYDA--ATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD  520 (520)
T ss_pred             HHHHHHHHHhhcC--CEeEEC--CCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEeC
Confidence            9999999998775  489999  99999999999999999   89999999999999999999863

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.9e-40  Score=370.63  Aligned_cols=259  Identities=17%  Similarity=0.249  Sum_probs=224.9

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..++.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||    +|+|++++|++||+++
T Consensus         6 ~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~   85 (541)
T PRK12851          6 VKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVA   85 (541)
T ss_pred             ecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhh
Confidence            346678999999999999999999999999999999999999999999999999999999    8999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|++++      ++++.|+
T Consensus        86 GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~------~~~~~l~  159 (541)
T PRK12851         86 GDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISA------NGDAEIG  159 (541)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhc------cChHHHH
Confidence                                      0100                     0113556788887764      4679999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      +++++|+..++.+   +.+.|.+.. ++..++++++|++|+++|.+|+|.    +|++.++||+|+++|++++       
T Consensus       160 ~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-------  228 (541)
T PRK12851        160 RLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-------  228 (541)
T ss_pred             HHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-------
Confidence            9999999999743   456777666 567789999999999999999874    3899999999999999853       


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEec-----CCchhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~-----v~~~~L~r  590 (632)
                            +.+           .+.++++.+.+.|+||||++++|++.++++|..+||      ++|++     +++++|+|
T Consensus       229 ------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~  291 (541)
T PRK12851        229 ------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLED  291 (541)
T ss_pred             ------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHH
Confidence                  222           256779999999999999999999999999999996      99997     78999999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||++|||++++     +++++++++||+|+.|++++   ++|++|.|
T Consensus       292 ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~  335 (541)
T PRK12851        292 IAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDG  335 (541)
T ss_pred             HHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcC
Confidence            99999999999     68999999999999999987   88888864

>KOG0357|consensus

Probab=100.00  E-value=4.2e-42  Score=341.56  Aligned_cols=243  Identities=26%  Similarity=0.412  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEE
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI  140 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i  140 (632)
                      +.++++++++.|++|++|||++||+|.|+|.+|+.|+++||...++|-||++|||++++++++++++.||+|+.|++..+
T Consensus       144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf  223 (400)
T KOG0357|consen  144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF  223 (400)
T ss_pred             HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c--ceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccc
Q psy17074        141 G--SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVR  218 (632)
Q Consensus       141 ~--~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~  218 (632)
                      |  ++++.+++.|++++.+||.+||++..+++|.||++|||||++|+.++|.++|+|||++|+.+|-++.+-+.    ..
T Consensus       224 gttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead----~~  299 (400)
T KOG0357|consen  224 GTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD----KI  299 (400)
T ss_pred             ccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhc----cC
Confidence            7  58999999999999999999999999999999999999999999999999999999999999998887652    34


Q ss_pred             cCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCccccccccccchhHhHHHHhHHHHH---HHH
Q psy17074        219 TGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRLDSVEEYQKVVDAEWKILYEKL---DKI  291 (632)
Q Consensus       219 ~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~  291 (632)
                      .|+ +|+++++| ++|||+||..|| |+|++|++.++.+++.+-   ++.+|+|+  .-..--||.+.+++||+   ++-
T Consensus       300 ~g~-eqya~raf-a~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidc--l~~G~nDMk~~~vie~l~~KkqQ  375 (400)
T KOG0357|consen  300 PGI-EQYAFRAF-ADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDC--LHKGTNDMKEQHVIETLIGKKQQ  375 (400)
T ss_pred             CcH-HHHHHHHH-HHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcch--hccCchhhhhhccHHHhhhhHHH
Confidence            566 88999998 999999999998 999999999999976532   44589999  66667899999999999   778


Q ss_pred             HHhhchhheecccccccccc
Q psy17074        292 HASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       292 l~~a~~va~~~l~~~~ii~~  311 (632)
                      +..|+.++.|+|++|++++.
T Consensus       376 i~laTQ~vrMiLKiddv~~~  395 (400)
T KOG0357|consen  376 ISLATQMVRMILKIDDVRKP  395 (400)
T ss_pred             HHHHHHHHHHhhhccceecC
Confidence            88999999999999998864

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=100.00  E-value=5.7e-42  Score=379.45  Aligned_cols=227  Identities=33%  Similarity=0.530  Sum_probs=212.8

Q ss_pred             EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074         75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA  154 (632)
Q Consensus        75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~  154 (632)
                      ||+++++|++.|+++|.++||.+++++++++|+|||++|||+++++++++++.++|+|+.|++.+++++++++|.+|..+
T Consensus       231 lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~  310 (464)
T cd00309         231 VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG  310 (464)
T ss_pred             EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccc
Q psy17074        155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPD  233 (632)
Q Consensus       155 ~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~  233 (632)
                      ++|||+|||+|+.+++|+||+++||++++++++++|++|||||++||+++.+|++++. ..+.      +++++++| ++
T Consensus       311 ~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~------~~~~~~~~-a~  383 (464)
T cd00309         311 KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGK------EQLGIEAF-AD  383 (464)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchH------HHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999999999999999998874 3444      45577887 99


Q ss_pred             cccccccccc-CCCCchhhHHHHHHhccCCC--ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccc
Q psy17074        234 GFEMQPKTYK-NPKIALLNIELELKAERDNA--EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGD  307 (632)
Q Consensus       234 ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~  307 (632)
                      ||+.||++|+ |||+|+.+++.+|+..|.+.  ..|+|.  .+|+|.||.+.|||||+   .++++.|+++|+++||+|+
T Consensus       384 aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~--~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~  461 (464)
T cd00309         384 ALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV--ETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDD  461 (464)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEEC--CCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999998 99999999999999877543  268999  99999999999999999   8899999999999999999


Q ss_pred             ccc
Q psy17074        308 VAT  310 (632)
Q Consensus       308 ii~  310 (632)
                      +|.
T Consensus       462 ii~  464 (464)
T cd00309         462 IIV  464 (464)
T ss_pred             HhC
Confidence            873

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PRK14104 chaperonin GroEL; Provisional

Probab=100.00  E-value=8e-42  Score=381.73  Aligned_cols=254  Identities=14%  Similarity=0.166  Sum_probs=224.9

Q ss_pred             cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHH------CCceEEEeC-----CchhHH
Q psy17074         39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD------RDMFCAGRV-----PEEDLK  107 (632)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~------~~I~~~~~v-----~~~~l~  107 (632)
                      +..+.+++ ..+..+     +.+.++++++.+.|+||||++++|+++|+++|..      .+|.++++.     ++++|+
T Consensus       217 ~~~Ilv~d-~~i~~~-----~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~  290 (546)
T PRK14104        217 DAYILINE-KKLSSL-----NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQ  290 (546)
T ss_pred             CcEEEEeh-hhhcCH-----HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHH
Confidence            45666665 233333     3488999999999999999999999999999996      457777544     589999


Q ss_pred             HHHHHhCCEEecc-----ccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC----------------------------
Q psy17074        108 RTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA----------------------------  154 (632)
Q Consensus       108 ~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~----------------------------  154 (632)
                      |||.+|||+++++     ++++++++||+|++|   ++++++++++++|.++                            
T Consensus       291 ~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~e  367 (546)
T PRK14104        291 DIAILTGGQAISEDLGIKLENVTLQMLGRAKKV---MIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQE  367 (546)
T ss_pred             HHHHHhCCEEEecCCCCCcCcCCHHHCCceeEE---EEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999998     899999999999999   5688999999998774                            


Q ss_pred             -------ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcce
Q psy17074        155 -------RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSF  227 (632)
Q Consensus       155 -------~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~  227 (632)
                             +++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++....++      +++++
T Consensus       368 Ri~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~i  440 (546)
T PRK14104        368 RLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIKTKNDD------QKTGV  440 (546)
T ss_pred             HHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhhcCChH------HHHHH
Confidence                   899999999999999999999999999999999998 9999999999999999987543344      45577


Q ss_pred             eeeccccccccccccc-CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecc
Q psy17074        228 HAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKL  303 (632)
Q Consensus       228 ~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l  303 (632)
                      ++| ++||+.||++|+ |||+|+.+++.+|+..+ +..+|||.  .+|+++||.+.|||||+   +++|++|+++|+++|
T Consensus       441 ~~~-a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL  516 (546)
T PRK14104        441 EIV-RKALSAPARQIAINAGEDGSVIVGKILEKE-QYSYGFDS--QTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLI  516 (546)
T ss_pred             HHH-HHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-CCcEeEeC--CCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHH
Confidence            888 999999999998 99999999999998655 44589999  99999999999999999   899999999999999


Q ss_pred             ccccccccc
Q psy17074        304 PIGDVATQY  312 (632)
Q Consensus       304 ~~~~ii~~~  312 (632)
                      ++|++|...
T Consensus       517 ~id~~I~~~  525 (546)
T PRK14104        517 TTEAMVAEL  525 (546)
T ss_pred             HHHHHHhcC
Confidence            999999764

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4e-40  Score=368.32  Aligned_cols=259  Identities=15%  Similarity=0.225  Sum_probs=221.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~~~~  412 (632)
                      ..++.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+    |+|++++|++||+++
T Consensus         6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~   85 (544)
T PRK12850          6 IRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLA   85 (544)
T ss_pred             ecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchh
Confidence            3467899999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.+++++++++      ++.|+
T Consensus        86 GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~------~~~l~  159 (544)
T PRK12850         86 GDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANG------DESIG  159 (544)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC------HHHHH
Confidence                                      1110                     011456688888887554      58999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      +++++|+..++.+   +.+.+....+ .-.++++++|++|+++|.+|+|.    +|++.++||+|+++|+.+        
T Consensus       160 ~lv~eAv~~vg~~---g~i~v~~~~~-~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--------  227 (544)
T PRK12850        160 EMIAEAMDKVGKE---GVITVEEAKT-LGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--------  227 (544)
T ss_pred             HHHHHHHHHhccc---CceeeEEccc-cCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc--------
Confidence            9999999999743   2344433221 12688999999999999999873    478999999999999964        


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCc------EEEec-----CCchhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM------FCAGR-----VPEEDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I------~~v~~-----v~~~~L~r  590 (632)
                           ++.+           .+.++++.+.+.|++|||++++|++.++++|..+||      ++|++     .++++|+|
T Consensus       228 -----~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~  291 (544)
T PRK12850        228 -----SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLED  291 (544)
T ss_pred             -----CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHH
Confidence                 2322           266779999999999999999999999999999999      99998     67899999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||++|||++++     +++++++++||+|++|++..   ++|++|+|
T Consensus       292 ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g  335 (544)
T PRK12850        292 IAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDG  335 (544)
T ss_pred             HHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeC
Confidence            99999999999     78999999999999999876   78888864

>KOG0363|consensus

Probab=100.00  E-value=3.2e-41  Score=337.71  Aligned_cols=265  Identities=25%  Similarity=0.391  Sum_probs=252.1

Q ss_pred             cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEe
Q psy17074         39 EEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM  118 (632)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii  118 (632)
                      .+++.+.+..++.++...|++.|+..+++|.+.|+|+.|...-|.++..++|...||+++.+...+-+||++..||+.++
T Consensus       248 GarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~  327 (527)
T KOG0363|consen  248 GARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIV  327 (527)
T ss_pred             cceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceee
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCh
Q psy17074        119 TTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGA  198 (632)
Q Consensus       119 ~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa  198 (632)
                      +++++.....+|+|+.+++.-+|+++++.|+||..+..|||+|||+|.+++||.+|++|||||++...++|.+++.||||
T Consensus       328 STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~  407 (527)
T KOG0363|consen  328 STFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGC  407 (527)
T ss_pred             eccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc--cccccccccc
Q psy17074        199 IEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE--IRLDSVEEYQ  274 (632)
Q Consensus       199 ~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~--~G~d~~~~~~  274 (632)
                      .||.+++.+.+++. ..|+      +.+++++| ++||..+|.+|| |||+|+.+++++|++.|.+..  +|+|.  .+|
T Consensus       408 sEm~Ma~av~~~A~~~pGk------ea~AieAf-arAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~--~~G  478 (527)
T KOG0363|consen  408 SEMLMAKAVDKEAQETPGK------EALAIEAF-ARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDV--RNG  478 (527)
T ss_pred             HHHHHHHHHHHHHhhCCch------hhHHHHHH-HHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCccccccc--ccC
Confidence            99999999999984 3444      56688998 999999999999 999999999999999987553  79999  999


Q ss_pred             hhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        275 KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       275 ~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      ++.||.+.||+|.+   ++.+.+|++.|-++||.|+||.+.
T Consensus       479 ~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~a  519 (527)
T KOG0363|consen  479 EIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAA  519 (527)
T ss_pred             chhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcC
Confidence            99999999999999   778889999999999999999875

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=100.00  E-value=1e-40  Score=374.86  Aligned_cols=254  Identities=19%  Similarity=0.290  Sum_probs=220.0

Q ss_pred             cccCCc--hhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhcc
Q psy17074        336 ENSQGK--PQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQD  409 (632)
Q Consensus       336 ~~~~~~--~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~  409 (632)
                      ...+|.  ++|...+.||+.|+++|+|||||+||+|||++++|+++|||||+||+++|+++||+    |+|++++|++||
T Consensus        58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd  137 (600)
T PLN03167         58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN  137 (600)
T ss_pred             eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence            344667  69999999999999999999999999999999999999999999999999999995    999999999999


Q ss_pred             ccc--------------------------ccCC--------------------chhhHHHHHHHHhhhcCCccccchhhH
Q psy17074        410 AEI--------------------------QKSD--------------------SGEYRGLLEKCAATALSSKLIHQQKGF  443 (632)
Q Consensus       410 ~~~--------------------------~~~~--------------------~~~~~~~L~~va~t~l~sK~~~~~~~~  443 (632)
                      +++                          +|..                    ...+.+.|.++|+++++      +++.
T Consensus       138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~------~~~~  211 (600)
T PLN03167        138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAG------NNYE  211 (600)
T ss_pred             hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhcc------CcHH
Confidence            999                          0100                    00012468889888865      4478


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhc
Q psy17074        444 FSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAE  518 (632)
Q Consensus       444 l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~  518 (632)
                      |++|+++|+..++++   +.|.+.  .|++..|+ ++++|++|+++|.||||.    +|++.++||+|+++++.      
T Consensus       212 i~~liaeAv~~Vg~~---g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~------  280 (600)
T PLN03167        212 VGNMIAEAMSKVGRK---GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK------  280 (600)
T ss_pred             HHHHHHHHHHHhccC---CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc------
Confidence            999999999999743   334333  78899987 899999999999999884    48899999999999986      


Q ss_pred             cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHH------HCCcEEEecCC-----chh
Q psy17074        519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA------DRDMFCAGRVP-----EED  587 (632)
Q Consensus       519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~------~~~I~~v~~v~-----~~~  587 (632)
                             +++++++.++           ++.+.+.|+||||++++|+++++++|.      ..+|++|++|+     +++
T Consensus       281 -------i~~~~~l~~~-----------le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~  342 (600)
T PLN03167        281 -------ITNARDLIGI-----------LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQY  342 (600)
T ss_pred             -------cCCHHHHHHH-----------HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHH
Confidence                   4577777665           567888999999999999999999999      67899999996     889


Q ss_pred             HHHHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEE-----EcC
Q psy17074        588 LKRTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQ-----IGS  624 (632)
Q Consensus       588 L~rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~  624 (632)
                      |+|||++|||++++     +++++++++||+|++|++++     +|+
T Consensus       343 L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~  389 (600)
T PLN03167        343 LDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGD  389 (600)
T ss_pred             HHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCC
Confidence            99999999999999     68999999999999999988     886

>KOG0359|consensus

Probab=100.00  E-value=2.1e-42  Score=353.21  Aligned_cols=296  Identities=25%  Similarity=0.397  Sum_probs=276.8

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      ..+......++.-|+.++..|.+.+++.+||+|..||++++.|++.+|.||.+.+++|+++||.+-|+..+|..|++.. 
T Consensus         9 kAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tG   88 (520)
T KOG0359|consen    9 KAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITG   88 (520)
T ss_pred             HHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccC
Confidence            3344455678889999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             ---------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHHH
Q psy17074        413 ---------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKM  447 (632)
Q Consensus       413 ---------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~l  447 (632)
                                                                   ++++...+++.|..+++|++.+|....-.+.++++
T Consensus        89 DGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~  168 (520)
T KOG0359|consen   89 DGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPI  168 (520)
T ss_pred             CCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence                                                         12233457889999999999999999999999999


Q ss_pred             HHHHHHHhc---ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceE
Q psy17074        448 VVDAVMSLD---DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI  524 (632)
Q Consensus       448 i~~A~~~v~---~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v  524 (632)
                      +++|++.+.   +.+|+.++.|.+...++..|+.+++|+++|++..||.   ||++.+|++||++|.+|||.+++.++.|
T Consensus       169 vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpd---mp~~~e~a~iL~~NvSLEYEK~Einsgf  245 (520)
T KOG0359|consen  169 VVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD---MPRRVEDAYILICNVSLEYEKPEINSGF  245 (520)
T ss_pred             HHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcc---cccchhceEEEEeeccccccccccccch
Confidence            999999887   3578899999999999999999999999999999995   8999999999999999999999999999


Q ss_pred             EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc----EEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEe
Q psy17074        525 RLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVM  600 (632)
Q Consensus       525 ~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~----vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii  600 (632)
                      .+++++|.+.+...|++++.+.+.+|++.+..    |||.|++|||..++.|.++||+++||.++..||||..+||+..+
T Consensus       246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~  325 (520)
T KOG0359|consen  246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAV  325 (520)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhcccee
Confidence            99999999999999999999999999998755    68889999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        601 TTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       601 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++++|++|++||+|+.|++.++|+++|||+++
T Consensus       326 nsvddLtp~~LG~aglVye~tlGEEkfTFIE~  357 (520)
T KOG0359|consen  326 NSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEK  357 (520)
T ss_pred             cccccCChhhccccceeEEeeccceeeEeeec
Confidence            99999999999999999999999999999985

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4.6e-40  Score=368.63  Aligned_cols=258  Identities=16%  Similarity=0.241  Sum_probs=221.6

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccc----cChHhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i----~hP~akll~~~a~~q~~~~  412 (632)
                      ..+|.+++..|+.|+..|+++|+|||||+||+|||+++.|+++|||||+|||++|++    +||.|+|++++|++||+++
T Consensus         6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~   85 (545)
T PRK12852          6 VKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLA   85 (545)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCcee
Confidence            345678999999999999999999999999999999999999999999999999999    5999999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+++.++      ++.|+
T Consensus        86 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~------~~~l~  159 (545)
T PRK12852         86 GDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANG------DAAIG  159 (545)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCC------hHHHH
Confidence                                      1100                     011234588888877654      58899


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +++++|+..++.+   +.+.+.  .|++. .++++++|+.|+++|.+|+|.    .|+..++||+|+++++.+       
T Consensus       160 ~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i-------  227 (545)
T PRK12852        160 KMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL-------  227 (545)
T ss_pred             HHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc-------
Confidence            9999999999743   345555  47775 789999999999999999873    478899999999999864       


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHH
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLK  589 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~  589 (632)
                            ++++           ++.++++.+++.|+||||++++|++.++++|..+      +|++|++++     +++|+
T Consensus       228 ------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~  290 (545)
T PRK12852        228 ------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLE  290 (545)
T ss_pred             ------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHH
Confidence                  3433           4566799999999999999999999999999986      799999887     89999


Q ss_pred             HHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||++++     +++++++++||+|+.|++++   +++++|+|
T Consensus       291 ~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~  335 (545)
T PRK12852        291 DIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNG  335 (545)
T ss_pred             HHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeC
Confidence            999999999999     79999999999999999987   67888764

>PTZ00114 Heat shock protein 60; Provisional

Probab=100.00  E-value=1.5e-41  Score=380.98  Aligned_cols=239  Identities=14%  Similarity=0.190  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC------ceEEEe-----CCchhHHHHHHHhCCEEeccc------c
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGR-----VPEEDLKRTMKACGGAVMTTA------H  122 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~------I~~~~~-----v~~~~l~~ia~~tGa~ii~~l------~  122 (632)
                      .+.++++++.+.|+||+|++++|+++|+++|..|+      |.++++     +++++|+|||.+|||+++++.      +
T Consensus       243 ~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~  322 (555)
T PTZ00114        243 SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLD  322 (555)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcc
Confidence            47788999999999999999999999999999997      777855     778999999999999999987      7


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEeccC-----------------------------------CCceEEEEecCCChh
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSGCK-----------------------------------NARTCTIIVRGGAEQ  167 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~-----------------------------------~~~~~TI~lrG~t~~  167 (632)
                      ++++++||+|++|++.+   +++++++++.                                   ++++|||+|||+|+.
T Consensus       323 ~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~  399 (555)
T PTZ00114        323 DFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEV  399 (555)
T ss_pred             cCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHH
Confidence            88888999999997665   6677777765                                   678999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc---CCCccccCCCCCcceeeeccccccccccccc-
Q psy17074        168 FLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG---LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-  243 (632)
Q Consensus       168 ~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~---~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-  243 (632)
                      +++|++|+++|||+++++++++| +|||||++|+++|..|++++.   .+++      +++++.+| ++||+.||++|+ 
T Consensus       400 ~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~------~~~~i~~~-a~AL~~ip~~La~  471 (555)
T PTZ00114        400 EVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD------QRTGVKIV-RNALRLPTKQIAE  471 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH------HHHHHHHH-HHHHHHHHHHHHH
Confidence            99999999999999999999998 999999999999999998863   2344      45677888 999999999998 


Q ss_pred             CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        244 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       244 NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      |||+|+.+++.+|++ ..+..+|||.  .+|+++||.+.|||||+   +++|++|+++|+++|++|++|...
T Consensus       472 NaG~d~~~v~~~l~~-~~~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~  540 (555)
T PTZ00114        472 NAGVEGAVVVEKILE-KKDPSFGYDA--QTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDL  540 (555)
T ss_pred             HcCCCHHHHHHHHHh-cCCCCEeEeC--CCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence            999999999999976 2344589999  99999999999999999   899999999999999999999874

>TIGR02348 GroEL chaperonin GroL

Probab=100.00  E-value=2.8e-41  Score=376.75  Aligned_cols=237  Identities=14%  Similarity=0.178  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHC------CceEEEeC-----CchhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAGRV-----PEEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~------~I~~~~~v-----~~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.++++++.+.|+||||++++|++.|+++|..|      ||++++++     ++++|+|||++|||++++     ++++
T Consensus       230 ~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~  309 (524)
T TIGR02348       230 DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEE  309 (524)
T ss_pred             HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCc
Confidence            3688899999999999999999999999999997      78888766     448999999999999999     8999


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEeccCCCc-----------------------------------eEEEEecCCChhh
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNAR-----------------------------------TCTIIVRGGAEQF  168 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~  168 (632)
                      +++++||+|+.|++.   .++|+++++|.+++                                   ++||+|||+|+.+
T Consensus       310 ~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~  386 (524)
T TIGR02348       310 VTLDDLGKAKKVTVD---KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETE  386 (524)
T ss_pred             CCHHHCCCceEEEEe---ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence            999999999999654   47899998876543                                   7899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCC
Q psy17074        169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKI  247 (632)
Q Consensus       169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~  247 (632)
                      ++|++|+++||++++|+++++| +|||||++|+++|.+|++.....+.      +++++++| ++||+.||++|+ |||+
T Consensus       387 l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~~~~~~~~------~~~~~~~~-a~AL~~ip~~La~NaG~  458 (524)
T TIGR02348       387 MKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEGLKGDNED------EAIGIDIV-KRALEAPLRQIAENAGK  458 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHHhccCChH------HHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence            9999999999999999999998 9999999999999999983233444      45677888 999999999998 9999


Q ss_pred             chhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        248 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       248 ~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      |+.+++++|++. . ..+|||.  .+|+++||.+.|||||+   .++|++|+++|+++|++|++|.+
T Consensus       459 d~~~v~~~l~~~-~-~~~G~d~--~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~  521 (524)
T TIGR02348       459 DGAVVAEKVKES-K-GNFGFNA--ATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVAD  521 (524)
T ss_pred             CHHHHHHHHHhc-C-CCeeEeC--cCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence            999999999865 2 2489999  99999999999999999   89999999999999999999964

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>CHL00093 groEL chaperonin GroEL

Probab=100.00  E-value=1.3e-39  Score=363.88  Aligned_cols=259  Identities=17%  Similarity=0.218  Sum_probs=217.4

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhH----HHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAK----TLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~ak----ll~~~a~~q~~~~  412 (632)
                      ..++.++|...++||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++    |++++|.+|++++
T Consensus         5 ~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~   84 (529)
T CHL00093          5 ILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVA   84 (529)
T ss_pred             eecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCcee
Confidence            346788999999999999999999999999999999999999999999999999999999985    8888999999888


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+++++      +++.|+
T Consensus        85 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~------~~~~l~  158 (529)
T CHL00093         85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAG------NDEEVG  158 (529)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc------ChHHHH
Confidence                                      0100                     01245678899998754      678999


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc----eeecCceEEEecccchhhhccCC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP----KTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~----~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      +|+++|+..++++   +.|.+. ..+++..++++++|++|+++|.||+|..++    ..++||+|++++++|++.+    
T Consensus       159 ~lv~eAv~~vg~~---g~i~~~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~----  230 (529)
T CHL00093        159 SMIADAIEKVGRE---GVISLE-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ----  230 (529)
T ss_pred             HHHHHHHHHhccC---Cceeec-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH----
Confidence            9999999999743   334332 122345678999999999999999986544    4699999999999998432    


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHH--HH----CCcEEEecCCc-----hhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF--AD----RDMFCAGRVPE-----EDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L--~~----~~I~~v~~v~~-----~~L~r  590 (632)
                                         ..+.++++.+.+.|++|||++++|++.++++|  .+    +||++|++|++     ++|+|
T Consensus       231 -------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~  291 (529)
T CHL00093        231 -------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLED  291 (529)
T ss_pred             -------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHH
Confidence                               23667799999999999999999999777766  66    48999999954     78999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEec
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNR  631 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~  631 (632)
                      ||++|||++++     +++++++++||+|+.|+++.   +++++|+
T Consensus       292 ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~  334 (529)
T CHL00093        292 IAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIA  334 (529)
T ss_pred             HHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEe
Confidence            99999999999     79999999999999999875   7888875

>KOG0362|consensus

Probab=100.00  E-value=3.7e-40  Score=342.59  Aligned_cols=275  Identities=18%  Similarity=0.320  Sum_probs=253.3

Q ss_pred             cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074         35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  114 (632)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG  114 (632)
                      .-++++|+.+++++++..|.+.|+..+..+++.|...|+++|++.+.|++++++||.+++|++++-.++.||.|+|+..|
T Consensus       245 ~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvG  324 (537)
T KOG0362|consen  245 QTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVG  324 (537)
T ss_pred             cccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccccCCCCCCCCCcceEEEEEEcceEEEEEec-cCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074        115 GAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSG-CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV  193 (632)
Q Consensus       115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~-~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv  193 (632)
                      |++.+++..+.+..+|+|++|+..++|+..+++|.. +..++++|++|||+|...+|+.||+++|++++.+..+++++++
T Consensus       325 A~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLl  404 (537)
T KOG0362|consen  325 ATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLL  404 (537)
T ss_pred             CccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccc
Confidence            999999999999999999999999999999988864 4467899999999999999999999999999999999999999


Q ss_pred             ecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCc-ccccccc
Q psy17074        194 AGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAE-IRLDSVE  271 (632)
Q Consensus       194 pGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~-~G~d~~~  271 (632)
                      ||+|++|++|+++|.+++..    ..|. .++++..| ++||+.+|++|+ |||+++.+++++++..|...+ +|+|-  
T Consensus       405 pGagatEieLak~i~~~g~~----~~Gl-~q~Aik~f-a~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di--  476 (537)
T KOG0362|consen  405 PGAGATEIELAKQISSRGAT----LPGL-KQLAIKKF-AEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDI--  476 (537)
T ss_pred             cCCchhHHHHHHHHHHhccc----CCCc-chhHHHHH-HHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeee--
Confidence            99999999999999998841    3454 78899998 999999999998 999999999999999887332 56666  


Q ss_pred             ccc-hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccccccc
Q psy17074        272 EYQ-KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADRV  317 (632)
Q Consensus       272 ~~~-~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k~  317 (632)
                      +-+ ...|+.++||||.+   +++++.|+++|+++|++|+||....+..|
T Consensus       477 ~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp  526 (537)
T KOG0362|consen  477 EAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGP  526 (537)
T ss_pred             eccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCC
Confidence            334 69999999999999   88999999999999999999998876433

>PRK14104 chaperonin GroEL; Provisional

Probab=100.00  E-value=2.8e-39  Score=361.25  Aligned_cols=258  Identities=16%  Similarity=0.241  Sum_probs=221.4

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhcccc----ChHhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV----HPAAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~----hP~akll~~~a~~q~~~~  412 (632)
                      ..+|.+++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++    ||.|+|++++|++||+++
T Consensus         6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~   85 (546)
T PRK14104          6 VKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAA   85 (546)
T ss_pred             ecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccc
Confidence            4467899999999999999999999999999999999999999999999999999999    999999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+.+.|.++|+++.+++      +.|+
T Consensus        86 GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d------~~i~  159 (546)
T PRK14104         86 GDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGD------AEIG  159 (546)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCc------hHHH
Confidence                                      1110                     0112356888888876554      7799


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCc-ccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGAL-EDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~-~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +++++|+..++.+   +.|.+...  ++. .++++++|++|+++|.||+|.    .|+..++||+|++++..        
T Consensus       160 ~lv~~Av~~vg~~---g~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--------  226 (546)
T PRK14104        160 KFLADAMKKVGNE---GVITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--------  226 (546)
T ss_pred             HHHHHHHHHhccC---CceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh--------
Confidence            9999999999753   45666543  445 589999999999999999883    46788999999999955        


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHH------CCcEEEecCC-----chhHH
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD------RDMFCAGRVP-----EEDLK  589 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~------~~I~~v~~v~-----~~~L~  589 (632)
                           ++++++           +.++++.+.+.|+||||++++|+++|+++|..      .+|++|++|+     +++|+
T Consensus       227 -----i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~  290 (546)
T PRK14104        227 -----LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQ  290 (546)
T ss_pred             -----hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHH
Confidence                 344444           45679999999999999999999999999995      5789999997     79999


Q ss_pred             HHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||+++++     ++++++++||+|++|++   +++++++|.|
T Consensus       291 ~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g  335 (546)
T PRK14104        291 DIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNG  335 (546)
T ss_pred             HHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeC
Confidence            9999999999999     99999999999999985   7889999864

>CHL00093 groEL chaperonin GroEL

Probab=100.00  E-value=2.4e-40  Score=369.70  Aligned_cols=239  Identities=15%  Similarity=0.183  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHH--HH----CCceEEEeC-----CchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYF--AD----RDMFCAGRV-----PEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l--~~----~~I~~~~~v-----~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      ..+.+.++++.+.|+||+|++++|++.++++|  .+    +||.+++++     ++++|+|||.+|||++++     +++
T Consensus       231 ~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~  310 (529)
T CHL00093        231 QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLE  310 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcC
Confidence            56889999999999999999999999888877  65    489999988     458899999999999999     799


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEec---------cCC-------------------------CceEEEEecCCChhh
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSG---------CKN-------------------------ARTCTIIVRGGAEQF  168 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~---------~~~-------------------------~~~~TI~lrG~t~~~  168 (632)
                      ++++++||+|+.|++.   .+++++|++         |..                         +.++||+|||+|+.+
T Consensus       311 ~~~~~~LG~~~~v~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~  387 (529)
T CHL00093        311 TIQLDLLGQARRIIVT---KDSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETE  387 (529)
T ss_pred             CCCHHHCCcceEEEEe---cCEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHH
Confidence            9999999999999665   478888874         221                         248899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc--CCCccccCCCCCcceeeeccccccccccccc-CC
Q psy17074        169 LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG--LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NP  245 (632)
Q Consensus       169 l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~--~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-Na  245 (632)
                      ++|.+|+++||++++++++++| +|||||++|+++|.+|++++.  .+++      +++++++| ++||+.||++|+ ||
T Consensus       388 l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~------~~~~i~~~-a~AL~~ip~~La~Na  459 (529)
T CHL00093        388 MKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKED------ELIGALIV-ARAILAPLKRIAENA  459 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChH------HHHHHHHH-HHHHHHHHHHHHHhc
Confidence            9999999999999999999998 999999999999999999863  3444      45577888 999999999998 99


Q ss_pred             CCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        246 KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       246 G~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      |+|+.+++.+++..  +..+|||.  .+|+|+||.+.|||||+   .++|++|+++|+++||+|++|.+.
T Consensus       460 G~d~~~v~~~l~~~--~~~~G~d~--~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~  525 (529)
T CHL00093        460 GKNGSVIIEKVQEQ--DFEIGYNA--ANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDK  525 (529)
T ss_pred             CCCHHHHHHHHHcc--CCCEeEEC--CCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999764  33589999  99999999999999999   899999999999999999999864

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=100.00  E-value=2.8e-40  Score=371.41  Aligned_cols=244  Identities=16%  Similarity=0.156  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHH------HCCceEEEeCC-----chhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFA------DRDMFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~------~~~I~~~~~v~-----~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.+.++++.+.|+||||++++|+++++++|.      ..++.++++.+     +++|+|||.+|||++++     ++++
T Consensus       286 ~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~  365 (600)
T PLN03167        286 DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDK  365 (600)
T ss_pred             HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCccc
Confidence            45556678889999999999999999999999      66788888774     88999999999999999     7889


Q ss_pred             CCCCCCCCcceEEEEE-----Ecc--------eEEEEEeccC-------------------CCceEEEEecCCChhhHHH
Q psy17074        124 LNDSVLGTCAVFDERQ-----IGS--------ERFNVFSGCK-------------------NARTCTIIVRGGAEQFLEE  171 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~-----i~~--------~~~~~~~~~~-------------------~~~~~TI~lrG~t~~~l~E  171 (632)
                      +++++||+|++|++.+     +++        +++++|+++.                   .+.+++|+|||+|+.+++|
T Consensus       366 ~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E  445 (600)
T PLN03167        366 VGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKE  445 (600)
T ss_pred             CCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHH
Confidence            9999999999998876     554        3666666543                   1234455599999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCch
Q psy17074        172 TERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIAL  249 (632)
Q Consensus       172 ~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~  249 (632)
                      +||+++|||+++|+++++| +|||||++|++++.+|++++. ..+.++     ..++.++ ++||+.||++|+ |||+|+
T Consensus       446 ~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq-----~~g~~~~-~~Al~~p~r~La~NAG~d~  518 (600)
T PLN03167        446 KKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQ-----KVGADIV-KRALSYPLKLIAKNAGVNG  518 (600)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhH-----HHHHHHH-HHHHhcchhhhhhcCCCCH
Confidence            9999999999999999999 999999999999999998863 233322     1124554 999999999998 999999


Q ss_pred             hhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccc
Q psy17074        250 LNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYF  313 (632)
Q Consensus       250 ~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~  313 (632)
                      .+++.+|+..+ +..+|||+  .+|+|+||.++|||||+   +++|++|+++|+++||+|++|....
T Consensus       519 ~~vv~~L~~~~-~~~~G~d~--~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~  582 (600)
T PLN03167        519 SVVSEKVLSND-NPKFGYNA--ATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIK  582 (600)
T ss_pred             HHHHHHHHhcC-CCCEeEeC--CCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999997544 45689999  99999999999999999   9999999999999999999999863

>KOG0360|consensus

Probab=100.00  E-value=2.6e-40  Score=341.43  Aligned_cols=267  Identities=28%  Similarity=0.429  Sum_probs=246.3

Q ss_pred             ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074         36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  115 (632)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa  115 (632)
                      -++.-.+.+.||++++++.+.|....++.+++|+..|+|||+++++|||.+++||..+|+++++|+.+++|++||++||+
T Consensus       249 m~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGa  328 (545)
T KOG0360|consen  249 MKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGA  328 (545)
T ss_pred             ccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCC
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccc------CCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074        116 AVMTTAH------DLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN  189 (632)
Q Consensus       116 ~ii~~l~------~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~  189 (632)
                      ++++++.      .+.++.+|+|+.|.+.+++++.++++.+.+.. .|+|+|||+++..+||++|++|||||+++..+++
T Consensus       329 t~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes  407 (545)
T KOG0360|consen  329 TLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLES  407 (545)
T ss_pred             eeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhcc
Confidence            9999987      55678899999999999999999999997765 9999999999999999999999999999999999


Q ss_pred             CeEEecCChhHHHHHHHHhhhccC-CCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC----CC
Q psy17074        190 HAVVAGGGAIEMELSKALRDYSGL-GDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD----NA  263 (632)
Q Consensus       190 ~~vvpGGGa~e~~ls~~L~~~~~~-~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~----~~  263 (632)
                      +++||||||+|.+|+-+|++|+.. .++      +++++..| +.||.++|++|+ ||+.|+.+++.+++..|.    ++
T Consensus       408 ~~vvpGGG~vE~aLs~yle~~a~s~~sr------E~laiaef-a~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p  480 (545)
T KOG0360|consen  408 KSVVPGGGAVETALSIYLENFATSVGSR------EQLAIAEF-AAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNP  480 (545)
T ss_pred             CccccCccHHHHHHHHHHHhhcccCccH------HHHHHHHH-HHHHhcchHHHhhhhccccccccccccCCchhhccCC
Confidence            999999999999999999999943 344      45567777 889999999998 999999999999988764    11


Q ss_pred             ------ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        264 ------EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       264 ------~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                            .+|+|.  .+|.+.|..+.|+++|.   ...|+.|++.+.++||+|+++.-.
T Consensus       481 ~~~~~k~~GldL--~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~  536 (545)
T KOG0360|consen  481 WRLLLKQYGLDL--INGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLL  536 (545)
T ss_pred             ccccchhhCccc--cccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcC
Confidence                  159999  99999999999999999   889999999999999999988543

>KOG0359|consensus

Probab=100.00  E-value=1.9e-39  Score=331.56  Aligned_cols=271  Identities=21%  Similarity=0.351  Sum_probs=254.7

Q ss_pred             hhccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEEecCcChhHHHHHHHCCceEEEeCCchhHH
Q psy17074         32 KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQ----VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK  107 (632)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~----lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~  107 (632)
                      +||+..-+.-+.+++.+|.+.+...|++++.+.+.+|++++..    |||.|++|||..++.|.++||++++|.++..||
T Consensus       235 EYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmE  314 (520)
T KOG0359|consen  235 EYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNME  314 (520)
T ss_pred             cccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHH
Confidence            5777788888999999999999999999999999999999877    689999999999999999999999999999999


Q ss_pred             HHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074        108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI  187 (632)
Q Consensus       108 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~  187 (632)
                      |+..+|||..++++++++++.||+|+.||+.++|+++|+|+++|.++++|||+++||+.+.+.++|++++|+|.++++++
T Consensus       315 RL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl  394 (520)
T KOG0359|consen  315 RLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTL  394 (520)
T ss_pred             HHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCcc
Q psy17074        188 RNHAVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAEI  265 (632)
Q Consensus       188 ~~~~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~~  265 (632)
                      +|+.++||+|++|.+++.+|+... +..++.++      ++++| ++||..+|++|+ |+|+|+.+.+.+|.+.|.....
T Consensus       395 ~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~------g~~af-a~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~  467 (520)
T KOG0359|consen  395 EDKCGIPGAGAFEVALGRHLRESKKSVKGRAYL------GVKAF-ANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLR  467 (520)
T ss_pred             hhcccccCchHHHHHHHHHHHHhhhccCchhhh------hHHHH-HhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhc
Confidence            999999999999999999999765 44566444      55888 999999999998 9999999999999888876667


Q ss_pred             ccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        266 RLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       266 G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      |+|.  .+|+=++...+||||.+   ++.|.+++-+|+-+|-.|+|+..
T Consensus       468 g~dl--~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA  514 (520)
T KOG0359|consen  468 GLDL--FRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA  514 (520)
T ss_pred             cccc--ccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence            9999  99999999999999999   88999999999999999998754

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.98  E-value=2e-31  Score=272.26  Aligned_cols=185  Identities=24%  Similarity=0.336  Sum_probs=172.2

Q ss_pred             cchhhHHHHHHHHHHHHhc------ccCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074        438 HQQKGFFSKMVVDAVMSLD------DLLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN  510 (632)
Q Consensus       438 ~~~~~~l~~li~~A~~~v~------~~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~  510 (632)
                      ..|.++|++++++|+..+.      +.+|+. +|+|.+++||++.||++++|++|++++.++   +||++++||||++++
T Consensus        17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~---~m~~~i~n~kIlll~   93 (261)
T cd03334          17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK---RMPSKIKNPRILLLQ   93 (261)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc---cCCcccCCCcEEEEe
Confidence            5689999999999999985      136665 599999999999999999999999999887   489999999999999


Q ss_pred             ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074        511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR  590 (632)
Q Consensus       511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r  590 (632)
                      |+|++++++.       ++++++++.++|++++++++++|++.|++||+|+++|++.+++||.++||++++++++.+|+|
T Consensus        94 ~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r  166 (261)
T cd03334          94 GPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER  166 (261)
T ss_pred             eeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence            9999988764       468899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecc-cCCCCCCCeeeeEEEEEEEcC-----eEEEEecC
Q psy17074        591 TMKACGGAVMTTA-HDLNDSVLGTCAVFDERQIGS-----ERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~~l-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~  632 (632)
                      ||++|||++++++ +++++++||+|++|+++++|+     ++|+||+|
T Consensus       167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~  214 (261)
T cd03334         167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEG  214 (261)
T ss_pred             HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEec
Confidence            9999999999994 589999999999999999996     69999975

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>KOG0356|consensus

Probab=99.98  E-value=9.8e-33  Score=291.74  Aligned_cols=242  Identities=15%  Similarity=0.131  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC-----------ceEEEeCCchhHHHHHHHhCCEEec------c
Q psy17074         58 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD-----------MFCAGRVPEEDLKRTMKACGGAVMT------T  120 (632)
Q Consensus        58 ~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~-----------I~~~~~v~~~~l~~ia~~tGa~ii~------~  120 (632)
                      -+.|.+.++.-.....||++++++|+.+||..|..|+           .|+|++.++..+.|+|.+|||+++.      +
T Consensus       243 v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~  322 (550)
T KOG0356|consen  243 VQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLN  322 (550)
T ss_pred             HHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcc
Confidence            3456777888889999999999999999999999984           4889999999999999999999986      4


Q ss_pred             ccCCCCCCCCCcceEEEEEEcceEEEEEecc-----------------------------------CCCceEEEEecCCC
Q psy17074        121 AHDLNDSVLGTCAVFDERQIGSERFNVFSGC-----------------------------------KNARTCTIIVRGGA  165 (632)
Q Consensus       121 l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~-----------------------------------~~~~~~TI~lrG~t  165 (632)
                      ++...+.+||+|+.+   .+..+.++++.+.                                   ..+++++|.++|.|
T Consensus       323 le~~~~~dLG~~~ev---vvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~s  399 (550)
T KOG0356|consen  323 LEDAKLEDLGEVGEV---VVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHS  399 (550)
T ss_pred             cccCchhhcCcceeE---EEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcc
Confidence            667788999999999   8888888888762                                   22579999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccC-CCccccCCCCCcceeeeccccccccccccc-
Q psy17074        166 EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGL-GDKVRTGHPSDNSFHAISPDGFEMQPKTYK-  243 (632)
Q Consensus       166 ~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~-~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-  243 (632)
                      +.+++|++++++||||++++++++| +|||||+++++++..|.++... +.+++.      +++++ .+||..|.++|+ 
T Consensus       400 e~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~------G~eiv-~~Al~~P~~~Iak  471 (550)
T KOG0356|consen  400 EVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKV------GVEIV-KKALRLPAQTIAK  471 (550)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhh------hHHHH-HHHHhhhHHHHHH
Confidence            9999999999999999999999999 9999999999999999988743 333333      44676 999999999998 


Q ss_pred             CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074        244 NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR  316 (632)
Q Consensus       244 NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k  316 (632)
                      |||+++..++.|++.  .  .+|||+  ..++|+||+++||+||.   |++|.+|+++|++++|++++|++.-...
T Consensus       472 NAGvdg~~vv~Kv~~--~--~~gyda--~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~  541 (550)
T KOG0356|consen  472 NAGVDGSVVVEKVLN--D--DYGYDA--AKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE  541 (550)
T ss_pred             hcCCchHHHHHHHHh--h--hhhhhh--hcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence            999999999999983  2  589999  99999999999999999   9999999999999999999999984443

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=99.96  E-value=4.4e-28  Score=240.64  Aligned_cols=166  Identities=39%  Similarity=0.588  Sum_probs=157.8

Q ss_pred             HHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCc
Q psy17074        422 GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQP  498 (632)
Q Consensus       422 ~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~  498 (632)
                      +.|.++|+|+++||+ +.|.+.|++++++|+..++.   .++.++|+|++++||++.||++++|++|++++.|++   ||
T Consensus         2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~---m~   77 (209)
T cd03333           2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPY---MP   77 (209)
T ss_pred             hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCC---CC
Confidence            468999999999999 99999999999999999974   356789999999999999999999999999999985   79


Q ss_pred             eeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcE
Q psy17074        499 KTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF  578 (632)
Q Consensus       499 ~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~  578 (632)
                      +.++||+|++++++|++                                         ||+++++|++.+++||.++||+
T Consensus        78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~  116 (209)
T cd03333          78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM  116 (209)
T ss_pred             eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence            99999999999999985                                         9999999999999999999999


Q ss_pred             EEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       579 ~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++.+|+|||++|||++++++++++++.||+|++|+++++|+++|++|++
T Consensus       117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~  170 (209)
T cd03333         117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEG  170 (209)
T ss_pred             EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEc
Confidence            999999999999999999999999999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.95  E-value=1.1e-26  Score=237.36  Aligned_cols=149  Identities=20%  Similarity=0.327  Sum_probs=142.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccc-cC
Q psy17074         45 EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA-HD  123 (632)
Q Consensus        45 ~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l-~~  123 (632)
                      +++++++.++++|++++..++++|++.|+||||++++|++.|++||.++||++++++++.+|+|||++|||++++++ ++
T Consensus       103 ~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~  182 (261)
T cd03334         103 NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDL  182 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999995 58


Q ss_pred             CCCCCCCCcceEEEEEEcc-----eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEE
Q psy17074        124 LNDSVLGTCAVFDERQIGS-----ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVV  193 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~-----~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vv  193 (632)
                      ++++.||+|++|+++++++     +++++|++|..+++|||+|||+|+++++|+||+++||+++++++..+++++
T Consensus       183 ~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~~  257 (261)
T cd03334         183 LTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSFL  257 (261)
T ss_pred             cCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            8999999999999999996     699999999999999999999999999999999999999999999988543

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>KOG0356|consensus

Probab=99.94  E-value=5.2e-27  Score=248.45  Aligned_cols=252  Identities=20%  Similarity=0.264  Sum_probs=210.7

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhccc
Q psy17074        335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQDA  410 (632)
Q Consensus       335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~~  410 (632)
                      .+..+|.++|...++|+..|||+|.+|+||+|||++|.+.+|.|.|||||+|+++++++.++.    |+++++++.++|+
T Consensus        17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~   96 (550)
T KOG0356|consen   17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE   96 (550)
T ss_pred             cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence            355688999999999999999999999999999999999999999999999999999999987    8999999999999


Q ss_pred             cc--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhH
Q psy17074        411 EI--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGF  443 (632)
Q Consensus       411 ~~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~  443 (632)
                      .+                          .|+.                     .....+++.++|.++      ++.+..
T Consensus        97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiS------AngD~~  170 (550)
T KOG0356|consen   97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATIS------ANGDKE  170 (550)
T ss_pred             ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhh------cCCcHH
Confidence            98                          1111                     012356677777766      445688


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCcC----CceeecCceEEEecccchhhhc
Q psy17074        444 FSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFEM----QPKTYKNPKIALLNIELELKAE  518 (632)
Q Consensus       444 l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~~----m~~~~~n~kIll~~~~Le~~~~  518 (632)
                      +++++.+|+.+++..   +.|.+.  .|.++.| .++++||.||++|.+|||.+    +..+++||++++.+..+     
T Consensus       171 ig~li~~a~~kvG~~---GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki-----  240 (550)
T KOG0356|consen  171 IGNLISDAMKKVGRK---GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKI-----  240 (550)
T ss_pred             HHHHHHHHHHHhCcC---CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhh-----
Confidence            999999999999865   556665  5666665 58999999999999999954    44578999999988874     


Q ss_pred             cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecCCchh-----
Q psy17074        519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVPEED-----  587 (632)
Q Consensus       519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v~~~~-----  587 (632)
                              ++++++.+           .++.......|++|++++|+.++|..|..|+      +++++.+.+-|     
T Consensus       241 --------~~v~~ivp-----------~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~  301 (550)
T KOG0356|consen  241 --------SSVQSIVP-----------ALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNL  301 (550)
T ss_pred             --------hHHHHHhH-----------HHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHh
Confidence                    45566554           4888888899999999999999999999985      78999996555     


Q ss_pred             HHHHHHHcCCeEeec------ccCCCCCCCeeeeEEEEEE
Q psy17074        588 LKRTMKACGGAVMTT------AHDLNDSVLGTCAVFDERQ  621 (632)
Q Consensus       588 L~rIa~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~  621 (632)
                      +.+|+.+||++++..      +++.++++||.|+++.+..
T Consensus       302 l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk  341 (550)
T KOG0356|consen  302 LKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK  341 (550)
T ss_pred             hhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec
Confidence            999999999998873      6778889999999987753

>KOG0357|consensus

Probab=99.89  E-value=2.1e-23  Score=208.39  Aligned_cols=221  Identities=25%  Similarity=0.387  Sum_probs=161.4

Q ss_pred             cchhhhcccC--ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHH
Q psy17074        325 QPQILLLKEG--TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLV  402 (632)
Q Consensus       325 ~~~~~~~~~~--~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~  402 (632)
                      ++|..++++.  ..+..|.++..+|+.+.++++.+++||+||+|++||++.+.|++.+||||         .|++++++.
T Consensus         9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv   79 (400)
T KOG0357|consen    9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV   79 (400)
T ss_pred             cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence            3566666544  45569999999999999999999999999999999999999999999999         789999999


Q ss_pred             HHHHhccccccc-CCchhhHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEE
Q psy17074        403 DIAKSQDAEIQK-SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVD  481 (632)
Q Consensus       403 ~~a~~q~~~~~~-~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~  481 (632)
                      ..+.+|++++.. .+...           .|++-           +.-+|.....     ..|+-+          .+.+
T Consensus        80 ~LS~sqd~eIgdGtTgVv-----------vLa~a-----------lleqa~~li~-----~~ihpi----------ki~~  122 (400)
T KOG0357|consen   80 ILSKSQDDEIGDGTTGVV-----------VLAGA-----------LLEQAHELID-----RGIHPI----------KIAQ  122 (400)
T ss_pred             HhcccchhhhccCCcccE-----------Eeccc-----------chHhHHhhcc-----cccchh----------HHHH
Confidence            999999998821 11000           00000           0111111110     001101          1111


Q ss_pred             eEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q psy17074        482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSK  561 (632)
Q Consensus       482 Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~  561 (632)
                      |+......+...                   |+-          +.++-+           +.++++++++.|.+++|||
T Consensus       123 g~e~~~~~av~~-------------------l~~----------i~~~~e-----------f~emi~~vK~~ga~l~icq  162 (400)
T KOG0357|consen  123 GYEKAKVVAVEH-------------------LDE----------ISDPFE-----------FEEMIQQIKETGANLAICQ  162 (400)
T ss_pred             hhhhHHHhhhhh-------------------hhh----------hccccc-----------HHHHHHHHHhhCCcEEEEe
Confidence            211111111000                   000          000001           5678999999999999999


Q ss_pred             CCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEec
Q psy17074        562 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNR  631 (632)
Q Consensus       562 ~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~  631 (632)
                      |++||+|-|+|.+|+..+|||++-.++|-||++||++|+++|++++++.||+|+.|++..+|.  |+++.++
T Consensus       163 wgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviE  234 (400)
T KOG0357|consen  163 WGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIE  234 (400)
T ss_pred             cccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999994  6666665

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=99.84  E-value=2.4e-20  Score=185.12  Aligned_cols=115  Identities=37%  Similarity=0.662  Sum_probs=112.2

Q ss_pred             EEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074         75 VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA  154 (632)
Q Consensus        75 lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~  154 (632)
                      ||+++++|++.|+++|.++||.+++++++.+|+|||++|||++++++++++++.||+|++|++..++++++++|.+|..+
T Consensus        95 vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~  174 (209)
T cd03333          95 VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG  174 (209)
T ss_pred             EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             ceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074        155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN  189 (632)
Q Consensus       155 ~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~  189 (632)
                      .+|||+|||+|+.+++|.||+++||++++++++++
T Consensus       175 ~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~  209 (209)
T cd03333         175 KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE  209 (209)
T ss_pred             CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>KOG0230|consensus

Probab=99.66  E-value=2.4e-16  Score=183.03  Aligned_cols=185  Identities=22%  Similarity=0.327  Sum_probs=164.5

Q ss_pred             cchhhHHHHHHHHHHHHhcc------cCCC-CcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEec
Q psy17074        438 HQQKGFFSKMVVDAVMSLDD------LLPL-NMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN  510 (632)
Q Consensus       438 ~~~~~~l~~li~~A~~~v~~------~~~~-~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~  510 (632)
                      ..|.+.+..|+.+|...+..      ..|+ ++|+|.++.||+..||+++.|+++.+...|.   .|...+++|+|+++.
T Consensus       331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k---~M~~~~e~prilll~  407 (1598)
T KOG0230|consen  331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK---RMATKYENPRILLLG  407 (1598)
T ss_pred             hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhh---hhhhhccCCceEEEe
Confidence            46889999999999998863      2333 7999999999999999999999999999887   588999999999999


Q ss_pred             ccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHH
Q psy17074        511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR  590 (632)
Q Consensus       511 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~r  590 (632)
                      ++|+|.+-..+       ...++.++++|.++++..|.+|....++++++.++|++.|+++|...+|..+-++++.-|+|
T Consensus       408 g~leyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leR  480 (1598)
T KOG0230|consen  408 GPLEYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLER  480 (1598)
T ss_pred             cchhhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHH
Confidence            99999875543       23456667779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeEeecccCCCCCCCeeeeEEEEEEEc-----CeEEEEecC
Q psy17074        591 TMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG-----SERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~  632 (632)
                      |+++|||.|+++++.++...||+|..|++..+-     .+.++||+|
T Consensus       481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffeg  527 (1598)
T KOG0230|consen  481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEG  527 (1598)
T ss_pred             HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhc
Confidence            999999999999999999999999999998776     456666654

>KOG0230|consensus

Probab=99.49  E-value=4.9e-14  Score=164.10  Aligned_cols=153  Identities=20%  Similarity=0.350  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccccCCCC
Q psy17074         47 PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLND  126 (632)
Q Consensus        47 ~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l~~l~~  126 (632)
                      ...++.++++|.++++.+|.+|....++++++.++|++.|+++|...+|..+-++++.-|+||+++|||.|+++++.++.
T Consensus       419 lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~  498 (1598)
T KOG0230|consen  419 LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTS  498 (1598)
T ss_pred             ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEEEEEc-----ceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChh
Q psy17074        127 SVLGTCAVFDERQIG-----SERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI  199 (632)
Q Consensus       127 ~~lG~~~~v~~~~i~-----~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~  199 (632)
                      ..+|+|+.++++.+.     .+.+++|+||..+.+|||+|||+...++.++|+.++-++.+++...-+-.++.--|+.
T Consensus       499 ~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~as  576 (1598)
T KOG0230|consen  499 QKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGAS  576 (1598)
T ss_pred             cccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc
Confidence            999999999887765     5678999999999999999999999999999999999999999988777666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	632
3iyg_H	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		1e-127
3p9d_G	550	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-103
3ko1_A	553	Cystal Structure Of Thermosome From Acidianus Tengc		6e-47
1a6d_A	545	Thermosome From T. Acidophilum Length = 545		2e-44
1a6d_B	543	Thermosome From T. Acidophilum Length = 543		3e-40
1q3r_A	548	Crystal Structure Of The Chaperonin From Thermococc		3e-37
1q2v_A	548	Crystal Structure Of The Chaperonin From Thermococc		3e-36
1q3s_A	548	Crystal Structure Of The Chaperonin From Thermococc		3e-36
3los_A	543	Atomic Model Of Mm-Cpn In The Closed State Length =		1e-34
3izh_A	513	Mm-Cpn D386a With Atp Length = 513		3e-34
3rus_A	543	Crystal Structure Of Cpn-Rls In Complex With Adp Fr		7e-33
3izi_A	513	Mm-Cpn Rls With Atp Length = 513		1e-32
3iyg_A	529	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		7e-31
3aq1_B	500	Open State Monomer Of A Group Ii Chaperonin From Me		2e-28
3p9d_E	562	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-28
3iyf_A	521	Atomic Model Of The Lidless Mm-Cpn In The Open Stat		2e-27
3j02_A	491	Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun		3e-27
3izn_A	491	Mm-Cpn Deltalid With Atp Length = 491		3e-27
3izk_A	491	Mm-Cpn Rls Deltalid With Atp Length = 491		2e-25
3iyg_E	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		3e-25
3iyg_D	518	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		9e-25
3iyg_G	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-24
3p9d_D	528	The Crystal Structure Of Yeast Cct Reveals Intrinsi		2e-21
3p9d_B	527	The Crystal Structure Of Yeast Cct Reveals Intrinsi		8e-21
3iyg_B	513	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-20
3p9d_A	559	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-18
3p9d_A	559	The Crystal Structure Of Yeast Cct Reveals Intrinsi		5e-17
1ass_A	159	Apical Domain Of The Chaperonin From Thermoplasma A		5e-16
3p9d_C	590	The Crystal Structure Of Yeast Cct Reveals Intrinsi		6e-15
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-14
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		1e-13
3p9d_H	568	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-13
3iyg_Q	512	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-13
1e0r_B	159	Beta-Apical Domain Of Thermosome Length = 159		3e-13
3p9d_F	546	The Crystal Structure Of Yeast Cct Reveals Intrinsi		2e-11
3p9d_F	546	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-10
1gml_A	178	Crystal Structure Of The Mouse Cct Gamma Apical Dom		2e-09

>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/348 (65%), Positives = 259/348 (74%), Gaps = 53/348 (15%)
Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
           KEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI+KLL
Sbjct: 1   KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
           D+VHPAAKTLVDIAKSQDAE+                                       
Sbjct: 61  DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 413 --------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
                         +K D  E R LLEKCA TALSSKLI QQK FF+KMVVDAVM LDDL
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
           L L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP IALLN+ELELKAE
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
           +DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFADRDMF
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           CAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGER 348

>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550

Iteration: 1
 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/359 (52%), Positives = 248/359 (69%), Gaps = 53/359 (14%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           + P I++LKEGT+ SQGK Q+ISNINAC AV +A++ TLGP G D LIV  N K+TISND
Sbjct: 6   QTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISND 65
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDA--------------EIQK--------------- 414
           GATI+KLLD+VHPAAKTLVDI+++QDA              E+ K               
Sbjct: 66  GATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLI 125
Query: 415 -----------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDA 451
                                  S+    R LLE+CA TA+SSKLIH    FF KM VDA
Sbjct: 126 MKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDA 185
Query: 452 VMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLN 510
           V+SLD + L   +IGIKK+ GGA+E+SL ++GV+FKKTF+YAGFE QPK + NPKI  LN
Sbjct: 186 VLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLN 245
Query: 511 IELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQ 570
           +ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++  +GA +VLSKLPIGD+ATQ
Sbjct: 246 VELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQ 305
Query: 571 YFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
           +FADR++FCAGRV  +D+ R ++A GG++ +T  D+    LGTCA+F+E QIGSER  L
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNL 364

>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553

Iteration: 1
 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 197/366 (53%), Gaps = 61/366 (16%)
Query: 319 TSQVFRQPQ---ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQN 375
           T+ V   P+   +++LKEG+  + GK  + +NI A +AV +A+++T GPRGMDK++VD  
Sbjct: 4   TATVATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSL 63
Query: 376 GKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE---------------IQKSDSGEY 420
           G  TI+NDGATI+  +D+ HPAAK LV IAK QD E               ++K++   Y
Sbjct: 64  GDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLY 123
Query: 421 RG----------------------------------LLEKCAATALSSKLIHQQKGFFSK 446
           +                                   LL K A T+LSSK +   + + + 
Sbjct: 124 KDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183
Query: 447 MVVDAVMSLDDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKT 500
           +VV AV  + +L      + L+ I I K AGG++ D+ LV G+   K   + G    PK 
Sbjct: 184 IVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKR 240
Query: 501 YKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
            +N KIAL++  LE++    +AEIR++   + QK +D E  ++ EK+DKI A+GA V++ 
Sbjct: 241 LENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIIC 300
Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDER 620
           +  I +VA  Y A + +    R  + DL++  +A GG V++   ++++  LG  ++ +ER
Sbjct: 301 QKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEER 360
Query: 621 QIGSER 626
           ++G ++
Sbjct: 361 KVGEDK 366

>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545

Iteration: 1
 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 177/358 (49%), Gaps = 56/358 (15%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           Q  IL+LKEGT+  QGK    +NI A +A+ DAVRTTLGP+GMDK++VD  G   ISNDG
Sbjct: 5   QVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE------------------- 419
           ATI+K +D+ HP AK +V+++K+QD  +          SGE                   
Sbjct: 65  ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124
Query: 420 --YR--------------------GLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 457
             YR                      L K A TALS K       F + +VV AV ++ +
Sbjct: 125 NGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAE 184
Query: 458 ------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
                 ++    I + K  GG++ D+  + G+   K   ++     P   KN KIAL++ 
Sbjct: 185 VRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKM---PDVVKNAKIALIDS 241
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            LE+K     A++++    + Q  ++ E     + ++KI  SGA VVL +  I DVA  Y
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHY 301
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
            A   ++   RV + D+++  KA G  ++T   DL  SVLG     +ER+IG +R T 
Sbjct: 302 LAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTF 359

>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543

Iteration: 1
 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 181/356 (50%), Gaps = 59/356 (16%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QP I +LKEGT+   GK  +  NI A  A+ ++VR++LGPRGMDK++VD  G   I+NDG
Sbjct: 5   QP-IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDG 63
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
            TI+K +D+ HPAAK +V+++K+QD+                                  
Sbjct: 64  VTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVIS 123
Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
                          EI      + + LL K A T+L+SK     K   +++  +AV S+
Sbjct: 124 EGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV 183
Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
            +L      +  + I + K  GGA++D+ L++G+   K   + G    P   K+ KIALL
Sbjct: 184 AELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAKIALL 240
Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           +  LE+K    +  +R++     QK +  E  +L E +DKI + GA VV+++  I D+A 
Sbjct: 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQ 300
Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 625
            Y +   ++   RV + D+ +  KA G ++++T  +++ S LGT    ++ ++G +
Sbjct: 301 HYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGED 356

>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548

Iteration: 1
 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 176/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           +Q+  QP +++L EGT+   G+     NI A + + + VRTTLGP+GMDK++VD  G   
Sbjct: 2   AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
           ++NDGATI+  +D+ HPAAK +V++AK+Q                          D  I 
Sbjct: 61  VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
            S                        D  +   LL K AAT+++ K     K   +K+ V
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
           +AV  + +      ++ L+ I  +K AG  +E+S LV GV   K   +      PK  +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            KIAL+N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA VV  +  
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
           I D+A  Y A   +    RV + D+++  KA G  ++T   DL    LG   V +ER++ 
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
            E
Sbjct: 357 GE 358

>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 175/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           +Q+  QP +++L EGT+   G+     NI A + + + VRTTLGP+GMDK++VD  G   
Sbjct: 2   AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
           ++ND ATI+  +D+ HPAAK +V++AK+Q                          D  I 
Sbjct: 61  VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
            S                        D  +   LL K AAT+++ K     K   +K+ V
Sbjct: 121 PSIITKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
           +AV  + +      ++ L+ I  +K AG  +E+S LV GV   K   +      PK  +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            KIAL+N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA VV  +  
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
           I D+A  Y A   +    RV + D+++  KA G  ++T   DL    LG   V +ER++ 
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
            E
Sbjct: 357 GE 358

>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 175/362 (48%), Gaps = 61/362 (16%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           +Q+  QP +++L EGT+   G+     NI A + + + VRTTLGP+GMDK++VD  G   
Sbjct: 2   AQLSGQP-VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIV 60
Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQ--------------------------DAEIQ 413
           ++ND ATI+  +D+ HPAAK +V++AK+Q                          D  I 
Sbjct: 61  VTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIH 120
Query: 414 KS------------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
            S                        D  +   LL K AAT+++ K     K   +K+ V
Sbjct: 121 PSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLL-KIAATSITGKNAESHKELLAKLAV 179
Query: 450 DAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
           +AV  + +      ++ L+ I  +K AG  +E+S LV GV   K   +      PK  +N
Sbjct: 180 EAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKRVEN 236
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            KIAL+N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA VV  +  
Sbjct: 237 AKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKG 296
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
           I D+A  Y A   +    RV + D+++  KA G  ++T   DL    LG   V +ER++ 
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 624 SE 625
            E
Sbjct: 357 GE 358

>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 176/351 (50%), Gaps = 57/351 (16%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           +QP +L   E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++ND
Sbjct: 3   QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
           G TI++ + + HPAAK L+++AK+Q+ E+                               
Sbjct: 61  GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                   QK+             + + +L K A T+++ K   + K   ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           + D    +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN 
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            +E+K    +AEIR+    +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
            A   +  A RV + D+++  KA G  V+T   DL+   LG   + +ER+I
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 348

>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513

Iteration: 1
 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 55/345 (15%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG TI++
Sbjct: 1   VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
            + + HPAAK L+++AK+Q+ E+                                     
Sbjct: 61  EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
             QK+             + + +L K A T+++ K   + K   ++++V+AV ++ D   
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  +E+K 
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEIKE 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
              +AEIR+    +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y A   +
Sbjct: 238 TETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 297
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
             A RV + D+++  KA G  V+T   DL+   LG   + +ER+I
Sbjct: 298 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 342

>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543

Iteration: 1
 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 174/351 (49%), Gaps = 57/351 (16%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           +QP +L   E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++ND
Sbjct: 3   QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
           G TI++ + + HPAAK L+++AK+Q+ E+                               
Sbjct: 61  GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                   QK+             + + +L K A T+++ K   + K   ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           + D    +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN 
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            +E+K    +AEIR+    +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
            A   +  A RV + D+++  KA G  V+     L+   LG   + +ER+I
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 348

>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 171/345 (49%), Gaps = 55/345 (15%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG TI++
Sbjct: 1   VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
            + + HPAAK L+++AK+Q+ E+                                     
Sbjct: 61  EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
             QK+             + + +L K A T+++ K   + K   ++++V+AV ++ D   
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  +E+K 
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEIKE 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
              +AEIR+    +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y A   +
Sbjct: 238 TETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 297
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
             A RV + D+++  KA G  V+     L+   LG   + +ER+I
Sbjct: 298 VAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 342

>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529

Iteration: 1
 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 159/328 (48%), Gaps = 60/328 (18%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
           + S G+     N+ A  ++ + V+++LGP G+DK++VD  G  TI+NDGATI+KLL++ H
Sbjct: 4   DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63
Query: 396 PAAKTLVDIAKSQD--------------AEIQKS-----------------------DSG 418
           PAAK L ++A  QD              AE+ K+                       ++ 
Sbjct: 64  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 123
Query: 419 EY-------------RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL--DDL----- 458
            Y             R  L   A T++SSK+I     FF+ +VVDAV+++   D+     
Sbjct: 124 RYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPR 183
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
            P+N I + K  G +  +S+L++G +        G +  PK   N KIA L+  L+    
Sbjct: 184 YPVNSINVLKAHGRSQMESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
           +   ++ +   E+  ++   E  I  E++ KI A+GA V+L+   I D+  +YF +    
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDL 606
              RV + DLKR  KA G  V++T  +L
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANL 328

>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 59/309 (19%)
Query: 370 LIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGE---- 419
           ++VD  G   I+NDGATI+K +DI HPAAK +V+++K+QDAE+          SGE    
Sbjct: 1   MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 420 -----------------YRGLLEKC----------------------AATALSSKLIHQQ 440
                            YR   EKC                      A TA++ K     
Sbjct: 61  AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 441 KGFFSKMVVDAVMSL----DDLLPLNM---IGIKKVAGGALEDSLLVDGVSFKKTFAYAG 493
           K   S + V AV S+    +D L +N+   I I+K AGG+++DS L+DG+   K  ++  
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180
Query: 494 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 553
               P+  +N KI LL+  +E +    ++EI++ S  + Q  +D E K++ E  +K+ AS
Sbjct: 181 M---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 554 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT 613
           GA VV  +  I D+A  Y     ++   RV + DLKR  K  G  ++     +    +GT
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT 297
Query: 614 CAVFDERQI 622
             + +E+++
Sbjct: 298 AGLVEEKEV 306

>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562

Iteration: 1
 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 174/366 (47%), Gaps = 61/366 (16%)
Query: 325 QPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           +P I++  +G +  Q G     S+I A ++V   ++T+LGPRG+DK+++  +G+ TI+ND
Sbjct: 27  RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITND 86
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAE----------------------IQK------- 414
           GATI+  +++ +  AK LV ++KSQD E                      IQK       
Sbjct: 87  GATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKI 146
Query: 415 ------------------------SDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
                                   S+   +R  L + A T+L SK++ +    F++M V+
Sbjct: 147 ANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVE 206
Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE--MQPKTYKNP 504
           AV+++ D     +  ++I ++   GG++ DS L++GV   K F++      + PK   + 
Sbjct: 207 AVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDG 266
Query: 505 -KIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            K+A+L    E    +   ++ + SVEEYQK+   E     E +D +  +GA VV+ +  
Sbjct: 267 VKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG 326
Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
             D A       D+     V  ++L+    +  G ++    DL+   LGTC+   E++ G
Sbjct: 327 FDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386
Query: 624 SERDTL 629
           + +D +
Sbjct: 387 TTKDRM 392

>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521

Iteration: 1
 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 79/351 (22%)
Query: 324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           +QP +L   E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++ND
Sbjct: 3   QQPGVL--PENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTND 60
Query: 384 GATIMKLLDIVHPAAKTLVDIAKSQDAEI------------------------------- 412
           G TI++ + + HPAAK L+++AK+Q+ E+                               
Sbjct: 61  GVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIV 120
Query: 413 --------QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMS 454
                   QK+             + + +L K A T+++ K   + K   ++++V+AV +
Sbjct: 121 VKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 455 LDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           + D    +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN 
Sbjct: 181 VVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNC 237
Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            +E  A                       ++L + + +I ASGA V+  +  I D+A  Y
Sbjct: 238 AIEETA----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHY 275
Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
            A   +  A RV + D+++  KA G  V+T   DL+   LG   + +ER+I
Sbjct: 276 LAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 326

>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG TI++
Sbjct: 1   VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
            + + HPAAK L+++AK+Q+ E+                                     
Sbjct: 61  EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
             QK+             + + +L K A T+++ K   + K   ++++V+AV ++ D   
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  +E  A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
                                  ++L + + +I ASGA V+  +  I D+A  Y A   +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
             A RV + D+++  KA G  V+T   DL+   LG   + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 320

>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 161/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG TI++
Sbjct: 1   VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
            + + HPAAK L+++AK+Q+ E+                                     
Sbjct: 61  EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
             QK+             + + +L K A T+++ K   + K   ++++V+AV ++ D   
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  +E  A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
                                  ++L + + +I ASGA V+  +  I D+A  Y A   +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
             A RV + D+++  KA G  V+T   DL+   LG   + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKI 320

>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 77/345 (22%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG TI++
Sbjct: 1   VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 390 LLDIVHPAAKTLVDIAKSQDAEI------------------------------------- 412
            + + HPAAK L+++AK+Q+ E+                                     
Sbjct: 61  EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 413 --QKSD----------SGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
             QK+             + + +L K A T+++ K   + K   ++++V+AV ++ D   
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  +E  A
Sbjct: 181 KVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALLNCAIEETA 237
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
                                  ++L + + +I ASGA V+  +  I D+A  Y A   +
Sbjct: 238 ----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGI 275
Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
             A RV + D+++  KA G  V+     L+   LG   + +ER+I
Sbjct: 276 VAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKI 320

>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 159/345 (46%), Gaps = 58/345 (16%)
Query: 340 GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAK 399
           G   L S+I A +AV + ++T+LGP G+DK++VD++G  T++NDGATI+ ++D+ H  AK
Sbjct: 8   GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAK 67
Query: 400 TLVDIAKSQDAEIQKSDSG----------EYRGLLEK----------------------- 426
            +V+++KSQD EI    +G          E   LL++                       
Sbjct: 68  LMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD 127
Query: 427 ------------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDDL----LPLNMI 464
                              A T L SK+++      +++ V+AV+++ D+    +   +I
Sbjct: 128 KISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELI 187
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI 524
            ++   GG LED+ L+ GV   K F++      PK  ++ KIA+L    E    +   ++
Sbjct: 188 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQM---PKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 525 RLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVP 584
            + SVE+++ +   E +   E + +I  +GA + + +    D A       D+     V 
Sbjct: 245 DVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVG 304
Query: 585 EEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
             +++    A GG ++    +L    LG   +  E   G+ +D +
Sbjct: 305 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKM 349

>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518

Iteration: 1
 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 155/341 (45%), Gaps = 67/341 (19%)
Query: 341 KPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAA 398
           KP  I  SNI+A +AV DA+RT+LGP+GMDK+I D  G  TI+NDGATI+K + ++HPAA
Sbjct: 8   KPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAA 67
Query: 399 KTLVDIAKSQDAE----------------------IQKS-----DSGEYRGLLEK----- 426
           + LV+++K+QD E                      +QK       S  ++  LEK     
Sbjct: 68  RMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEIL 127
Query: 427 -----------------CAATALSSKLIHQQKGFFSKMVVDAVMSLDD-----LLPLNMI 464
                             AAT+L+SK++ Q     S M VDAVM + D      + L  I
Sbjct: 128 TDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDI 187
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERDNAE 523
            I K  GG ++D  LV+G+   +  A +G     K     KI L+   L   K + DN  
Sbjct: 188 KIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKA----KIGLIQFCLSAPKTDMDNQI 243
Query: 524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMF 578
           +  D V +  +V+  E   +   + +I  +G  V+L +  I      D+A  +     + 
Sbjct: 244 VVSDYV-QMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 302
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
               +  ED++   K  G   +         +LG+  + +E
Sbjct: 303 VVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEE 343

>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 159/348 (45%), Gaps = 60/348 (17%)
Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
           T+   G+     NINA + + D +RT LGP+ M K+++D  G   ++NDG  I++ + + 
Sbjct: 2   TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQ 61
Query: 395 HPAAKTLVDIAKSQDAEIQKSDS------GE---------------------YRGLLEKC 427
           HPAAK++++I+++QD E+    +      GE                     YR  L+  
Sbjct: 62  HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDM 121
Query: 428 AAT----------------------ALSSKLIHQQKGFFSKMVVDAVMSLD-------DL 458
            +T                      ++++K+I +       + +DAV ++        ++
Sbjct: 122 ISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
                  ++K+ GG +EDS ++ GV   K   +       +  KNP+I LL+  LE K  
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMR---RYIKNPRIVLLDSSLEYKKG 238
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
               +I +   E++ +++  E + + +  + I      VV+++  I D+A  Y    ++ 
Sbjct: 239 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 298
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
              RV + D  R  +ACG  +++   +L +  +GT A + + ++IG E
Sbjct: 299 AIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDE 346

>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 64/324 (19%)
Query: 334 GTENSQGKPQLI--SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
            T  ++ KPQ +  +NI A ++V DA+RT+LGP+GMDK+I    G+  ISNDG TI+K +
Sbjct: 9   ATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQM 68
Query: 392 DIVHPAAKTLVDIAKSQDAE-----------------------------------IQKSD 416
            I+HP A+ LV+++ +QD+E                                    Q + 
Sbjct: 69  AILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAA 128
Query: 417 SGEYRGLLEKC--------------AATALSSKLIHQQKGFFSKMVVDAVMSLDDL---- 458
                 LLE C              A+T+LSSK++ Q   F + + VD+V+ + D     
Sbjct: 129 KRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKN 188
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKT-FAYAGFEMQPKTYKNPKIALLNIELELKA 517
           + LN I + K  GG ++D+ ++DGV   +T    AG    P   +  KI L+  ++    
Sbjct: 189 VDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG---GPTRKEKAKIGLIQFQISPPK 245
Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYF 572
                 I ++   +  K++  E   L     KI  +   V+L +  I      D+A  + 
Sbjct: 246 PDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFL 305
Query: 573 ADRDMFCAGRVPEEDLKRTMKACG 596
           +  ++     +  E+++   K  G
Sbjct: 306 SKLNIMVVKDIEREEIEFLSKGLG 329

>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 140/328 (42%), Gaps = 59/328 (17%)
Query: 353 AVVDAVRTTLGPRGMDKLIVDQNGKS-TISNDGATIMKLLDIVHPAAKT----------- 400
           AV D V++TLGP+GMDKL+   +  +  ++NDGATI+K + + +PAAK            
Sbjct: 28  AVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDE 87
Query: 401 ---------------------LVDIAKSQDAEI---------------------QKSDSG 418
                                L+D +K     I                        D  
Sbjct: 88  VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKT 147
Query: 419 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSL 478
            +R  L   A T LSSK++ Q K  F+++  +A++ L     L  I I K+ GG L DS 
Sbjct: 148 MFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSF 207
Query: 479 LVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVD 537
           L +G    K F       QPK  +N KI + N  L+  K +    + ++DS  +  ++  
Sbjct: 208 LDEGFILAKKFG----NNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEK 263
Query: 538 AEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG 597
           AE + +  K+ KI   G    +++  I D   Q F D  +        E ++R     GG
Sbjct: 264 AEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGG 323
Query: 598 AVMTTAHDLNDSVLGTCAVFDERQIGSE 625
            V++T  + +   LG C V +E  +G +
Sbjct: 324 EVVSTFDEPSKCKLGECDVIEEIMLGEQ 351

>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 59/348 (16%)
Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVD--QNGKSTISNDGATIMKLL 391
           G +  + +   +S+     A+ D V++TLGP+GMDK+++   ++    ++NDGATI+K +
Sbjct: 2   GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI 61
Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
            + +PAAK LVD+++ QD E+                                       
Sbjct: 62  GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 413 -------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLL 459
                          SD  ++R  L   A T LSSKL+   K  F+K+ V+AV+ L    
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181
Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAE 518
            L  I + K  GG+L DS L +G    K         QPK  +N KI + N  ++  K +
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKIK 237
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
              + +R+DS  +  ++  AE + + EK+++I   G    +++  I +   Q F    + 
Sbjct: 238 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 297
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
                    ++R     GG + +T        LG+C + +E  IG ++
Sbjct: 298 AIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDK 345

>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 47  PDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL 106
           P++ +++   E  I+ E++ KI  +GAQVVL+   I D+  + F +  +    R  +EDL
Sbjct: 267 PEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDL 326
Query: 107 KRTMKACGGAVMTTAHDLN------DSVLGTCAVFDERQIGSERFNVFSGCKNARTCTII 160
           +R  +A G  ++++  +L        S LG C    + +   +   +  G     + +II
Sbjct: 327 RRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSII 386
Query: 161 VRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           +RG  +  L+E ERSLHD++ +V+RT+ +  VV GGG +E  L+  L +++
Sbjct: 387 LRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFA 437

>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 153/360 (42%), Gaps = 68/360 (18%)
Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLI-------- 371
           SQ+F   +   L  G E   G      N+ A  AV + V+++LGP G+DK++        
Sbjct: 2   SQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFT 61
Query: 372 VDQNGKSTIS-----------------------NDGATIMKLL-------------DIVH 395
           V  +G + +S                        DG T + ++             + +H
Sbjct: 62  VTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIH 121
Query: 396 PAA------KTLVDIAKSQDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
           P          L +  +  +  +  S     +  L   A T++SSK+I     FFS MVV
Sbjct: 122 PTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVV 181
Query: 450 DAVMSLDDL-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK 502
           DA++++           P+  + + K  G +  +SLLV G +   T A    +  PK   
Sbjct: 182 DALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVAS---QAMPKRIA 238
Query: 503 --NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
             N KIA L++ L+        +I +D  E+ +++   E  I+ E++ KI  +GAQVVL+
Sbjct: 239 GGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLT 298
Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTC 614
              I D+  + F +  +    R  +EDL+R  +A G  ++++  +L        S LG C
Sbjct: 299 TKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLC 358

>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 71/132 (53%)
Query: 498 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 557
           P   KN KIAL++  LE+K     A++++    + Q  ++ E     + ++KI  SGA V
Sbjct: 16  PDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV 75
Query: 558 VLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVF 617
           VL +  I DVA  Y A   ++   RV + D+++  KA G  ++T   DL  SVLG     
Sbjct: 76  VLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETV 135
Query: 618 DERQIGSERDTL 629
           +ER+IG +R T 
Sbjct: 136 EERKIGDDRMTF 147

>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 59/88 (67%)
Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           Q  ++ +    E + G+   ISNI A +AV D +RT LGP+ M K+++D  G   ++NDG
Sbjct: 2   QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61
Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI 412
             I++ +D+ HPAAK++++++++QD E+
Sbjct: 62  HAILREIDVAHPAAKSMLELSRTQDEEV 89

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 48  DEYQKVVDAEWKILYEKLDKI---------HASGAQVVLSKLPIGDVATQYFADRDMFCA 98
           +E +K+V AE K + +++ KI          +    VV+++  I   +    A   +   
Sbjct: 246 EEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIAL 305
Query: 99  GRVPEEDLKRTMKACGGAVMTTAHDLN-DSVLGTCAVFDERQIGSERFNVFSGCKNARTC 157
            R    +++R   ACGG  + +  DLN D +LG   V+ E  +G E+F     C N R+ 
Sbjct: 306 RRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVY-EYTLGEEKFTFIEKCNNPRSV 364
Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
           T++++G  +  L + + ++ D +  V+  I +  VV G GA+E+ +++AL  Y
Sbjct: 365 TLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKY 417

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 149/355 (41%), Gaps = 65/355 (18%)
Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
           E ++ +  L  NI+A + + D +RT LGP+G  K++V   G   ++ DG  ++  + I H
Sbjct: 4   EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQH 63
Query: 396 PAAKTLVDIAKSQD--------------------AEIQKSDSGEYRGLLE---------- 425
           P A  +  +A +QD                    A++  S+    R + E          
Sbjct: 64  PTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKAL 123
Query: 426 ------------------KCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLNMI 464
                               A T+L +K+  +     ++ VVD+++++   D+ + L M+
Sbjct: 124 QFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMV 183
Query: 465 GIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEI 524
            I ++   +  D+ L+ G+       +   +   K  ++  I   N+ LE +    N+  
Sbjct: 184 EIMEMKHKSETDTSLIRGLVLDHGARHPDMK---KRVEDAYILTCNVSLEYEKTEVNSGF 240
Query: 525 RLDSVEEYQKVVDAEWKILYEKLDKI---------HASGAQVVLSKLPIGDVATQYFADR 575
              S EE +K+V AE K + +++ KI          +    VV+++  I   +    A  
Sbjct: 241 FYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKE 300
Query: 576 DMFCAGRVPEEDLKRTMKACGGAVMTTAHDLN-DSVLGTCAVFDERQIGSERDTL 629
            +    R    +++R   ACGG  + +  DLN D +LG   V+ E  +G E+ T 
Sbjct: 301 GIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVY-EYTLGEEKFTF 354

>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 149/370 (40%), Gaps = 64/370 (17%)
Query: 324 RQPQILLLKEGTEN-SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISN 382
           + P   L K+G  + S    Q+I +I A + +     T++GP G +K+IV+  GK  I+N
Sbjct: 7   QNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITN 66
Query: 383 DGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD------SGEYRGLLEKCAATALSSKL 436
           D AT+++ LDIVHPA K LV   + Q  ++          +GE   + EK  +  LS+  
Sbjct: 67  DAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVE 126
Query: 437 IHQQKGFFSK--------MVVDAVMSLDD------------------------------- 457
           I Q      K        MVV  +   +D                               
Sbjct: 127 IIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAV 186
Query: 458 --LLP------------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKN 503
             +LP            ++ I + K+ GG+L +S ++ G+ F +     G        K 
Sbjct: 187 SHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNR--EPEGHVKSLSEDKK 244
Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            K+A+    L++        + L + +E       E K +   + +I   G + +++   
Sbjct: 245 HKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAG 304
Query: 564 IGDVATQYFADRDMFCAGRVPEE-DLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
           +G++A  Y  +R      +VP + +L+R  + CG   +          LG        +I
Sbjct: 305 VGELALHYL-NRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEI 363
Query: 623 GSERDTLNRE 632
           G +R T+ ++
Sbjct: 364 GGDRVTVFKQ 373

>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 65/339 (19%)
Query: 333 EGTENSQGKPQLI-SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
           EG ++  G  + +  NI AC+ +    RT  GP GM+K++++   K  ++ND ATI++ L
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 392 DIVHPAAKTLVDIAKSQDAEI------------------------QKSDSGEYRGL---- 423
           ++ HPAAK +V  +  Q+ E+                          S S    G     
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 424 ---------LEKCAATALS-----SKLIH-----QQKG---FFSKMVVDAVMSL---DDL 458
                    L  C+A  L      S L+H     +Q G   F +K++  A +S+      
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGH 180
Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
             ++ I + K+ G  +  S ++ G+ FKK       E    + K+ KIA+ +   +    
Sbjct: 181 FNVDNIRVCKILGSGVHSSSVLHGMVFKKE-----TEGDVTSVKDAKIAVYSCPFDGMIT 235
Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
                + + S EE       E  ++  ++  I  +GA VV++   + D+A  Y    ++ 
Sbjct: 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIM 295
Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVL---GTC 614
                 + DL+R  K  G    T    LN  VL   G C
Sbjct: 296 LVRLNSKWDLRRLCKTVGA---TALPRLNPPVLEEMGHC 331

>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
           ++G+   K   + G    P   K+ KIALL+  LE+K    +  +R++     QK +  E
Sbjct: 1   MNGIIVDKEKVHPGM---PDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQE 57
Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
             +L E +DKI + GA VV+++  I D+A  Y +   ++   RV + D+ +  KA G ++
Sbjct: 58  ENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASI 117
Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSE 625
           ++T  +++ S LGT    ++ ++G +
Sbjct: 118 VSTIDEISSSDLGTAERVEQVKVGED 143

>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 48  DEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPIGDVATQYFADRDMFC 97
           D+  K+  +E K +  KL KI                V++++  I  ++   FA  ++  
Sbjct: 257 DQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILA 316
Query: 98  AGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTC 157
             R    +++R     GG    +  DL+  +LG   +  +  IG E+F   +   + ++C
Sbjct: 317 LRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSC 376
Query: 158 TIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALR--DYSGLGD 215
           TI+++G     L +T+ ++ D +  V   +++  ++ G GA  + LS+ LR  + + LG 
Sbjct: 377 TILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGA 436
Query: 216 KVRT 219
           K +T
Sbjct: 437 KGKT 440

>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 139/364 (38%), Gaps = 68/364 (18%)
Query: 330 LLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMK 389
           LL    E+ +    L  N+ + + +   + T LGP+G  K++VD  G   ++ DG  ++ 
Sbjct: 5   LLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLT 64
Query: 390 LLDIVHPAAKTLVDIAKSQDA--------------------------------------- 410
            + I  P A  +   A +QD                                        
Sbjct: 65  EMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEI 124
Query: 411 ------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
                       +I K++    R  L + A ++L +K+        + +V DAV+S+ D 
Sbjct: 125 ARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDA 184
Query: 459 ----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
               L L+M+ I ++   + +D+  + G+       +      P   KN  + +LN+ LE
Sbjct: 185 QADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM---PTRVKNAYVLILNVSLE 241
Query: 515 LKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 564
            +    N+     S ++  K+  +E K +  KL KI                V++++  I
Sbjct: 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI 301
Query: 565 GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 624
             ++   FA  ++    R    +++R     GG    +  DL+  +LG   +  +  IG 
Sbjct: 302 DPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE 361
Query: 625 ERDT 628
           E+ T
Sbjct: 362 EKFT 365

>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
           +EDS ++ GV   K   +       +  KNP+I LL+  LE K      +I +   E++ 
Sbjct: 1   MEDSCVLRGVMINKDVTHPRMR---RYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 57
Query: 534 KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 593
           +++  E + +++  + I      VV+++  I D+A  Y    ++    RV + D  R  +
Sbjct: 58  RILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIAR 117
Query: 594 ACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSE 625
           ACG  +++   +L +  +GT A + + ++IG E
Sbjct: 118 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDE 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	632
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	1e-129
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	1e-74
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	8e-26
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	1e-127
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	4e-76
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	5e-28
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	1e-126
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	6e-76
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	7e-28
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	1e-125
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	4e-72
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	2e-24
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	1e-125
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	8e-75
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	6e-26
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	1e-123
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	8e-69
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	2e-24
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	1e-123
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	6e-75
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	8e-26
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	1e-121
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	3e-74
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	2e-25
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-121
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	2e-69
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-22
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	1e-120
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	3e-72
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-27
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	1e-120
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	4e-67
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	1e-25
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	1e-120
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	7e-76
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	1e-26
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	1e-119
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	4e-77
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	8e-27
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	1e-118
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	4e-73
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	2e-25
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	1e-118
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	5e-68
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	7e-23
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	1e-117
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	4e-74
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	1e-25
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	1e-115
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	1e-72
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	2e-25
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	1e-115
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	5e-69
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	4e-25
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	1e-113
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	1e-45
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	1e-25
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	1e-113
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	3e-74
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	4e-26
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-104
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	8e-68
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-21
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	6e-92
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	6e-76
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	4e-26
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	1e-56
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	8e-50
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	1e-27
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	9e-53
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	7e-40
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	7e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score =  390 bits (1004), Expect = e-129
 Identities = 114/355 (32%), Positives = 174/355 (49%), Gaps = 56/355 (15%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           Q  IL+LKEGT+  QGK    +NI A +A+ DAVRTTLGP+GMDK++VD  G   ISNDG
Sbjct: 5   QVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDG 64

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------- 412
           ATI+K +D+ HP AK +V+++K+QD  +                                
Sbjct: 65  ATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVIS 124

Query: 413 ---------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD 457
                          + ++       L K A TALS K       F + +VV AV ++ +
Sbjct: 125 NGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAE 184

Query: 458 L------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           +      +    I + K  GG++ D+  + G+   K   ++     P   KN KIAL++ 
Sbjct: 185 VRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK---MPDVVKNAKIALIDS 241

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
            LE+K     A++++    + Q  ++ E     + ++KI  SGA VVL +  I DVA  Y
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHY 301

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            A   ++   RV + D+++  KA G  ++T   DL  SVLG     +ER+IG +R
Sbjct: 302 LAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDR 356

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score =  247 bits (634), Expect = 1e-74
 Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E E +    +P + Q  ++ E     + ++KI  SGA VVL +  I DVA  Y A 
Sbjct: 245 IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 304

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + D+++  KA G  ++T   DL  SVLG     +ER+IG +R     GCK
Sbjct: 305 EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 364

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           N +  +I++RGG +  + E ER+L+DAI +V  T  +   + GGGA+E EL+  L  Y+
Sbjct: 365 NPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYA 423

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score =  111 bits (279), Expect = 8e-26
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            P   KN KIAL++  LE+K     A++++    + Q  ++ E     + ++KI  SGA 
Sbjct: 227 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGAN 286

Query: 298 VVLSKLPIGDVATQYFADR 316
           VVL +  I DVA  Y A  
Sbjct: 287 VVLCQKGIDDVAQHYLAKE 305

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  383 bits (987), Expect = e-127
 Identities = 220/348 (63%), Positives = 253/348 (72%), Gaps = 53/348 (15%)

Query: 332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
           KEGT++SQG PQL+SNI+ACQ + +AVRTTLGPRGMDKLIVD  GK+TISNDGATI+KLL
Sbjct: 1   KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60

Query: 392 DIVHPA--------------------------------AKTLVD-------IAK-----S 407
           D+VHPA                                 K  V+       I +     +
Sbjct: 61  DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120

Query: 408 QDA---------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL 458
           Q A          ++K D  E R LLEKCA TALSSKLI QQK FF+KMVVDAVM LDDL
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180

Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
           L L MIGIKKV GGALE+S LV GV+FKKTF+YAGFEMQPK Y NP IALLN+ELELKAE
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240

Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
           +DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFADRDMF
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300

Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           CAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGER 348

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  251 bits (643), Expect = 4e-76
 Identities = 129/179 (72%), Positives = 149/179 (83%)

Query: 33  KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            K +K   E      ++YQ +VDAEW ILY+KL+KIH SGA+VVLSKLPIGDVATQYFAD
Sbjct: 237 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD 296

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
           RDMFCAGRVPEEDLKRTM ACGG++ T+ + L+  VLG C VF+E QIG ER+N F+GC 
Sbjct: 297 RDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCP 356

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
            A+TCTII+RGGAEQF+EETERSLHDAIMIVRR I+N +VVAGGGAIEMELSK LRDYS
Sbjct: 357 KAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 415

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  117 bits (295), Expect = 5e-28
 Identities = 67/83 (80%), Positives = 76/83 (91%)

Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           GFEMQPK Y NP IALLN+ELELKAE+DNAEIR+ +VE+YQ +VDAEW ILY+KL+KIH 
Sbjct: 215 GFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           SGA+VVLSKLPIGDVATQYFADR
Sbjct: 275 SGAKVVLSKLPIGDVATQYFADR 297

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =  381 bits (982), Expect = e-126
 Identities = 183/355 (51%), Positives = 239/355 (67%), Gaps = 53/355 (14%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
            P I++LKEGT+ SQGK Q+ISNINAC AV +A++ TLGP G D LIV  N K+TISNDG
Sbjct: 7   TPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDG 66

Query: 385 ATIMKLLDIVHPA--------------------------------AKTLVD-------IA 405
           ATI+KLLD+VHPA                                AK  ++       I 
Sbjct: 67  ATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIM 126

Query: 406 K-----SQDA-----EIQ---KSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAV 452
           K        A     E+     S+    R LLE+CA TA+SSKLIH    FF KM VDAV
Sbjct: 127 KGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV 186

Query: 453 MSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
           +SLD + L   +IGIKK+ GGA+E+SL ++GV+FKKTF+YAGFE QPK + NPKI  LN+
Sbjct: 187 LSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNV 246

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQY 571
           ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++  +GA +VLSKLPIGD+ATQ+
Sbjct: 247 ELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQF 306

Query: 572 FADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           FADR++FCAGRV  +D+ R ++A GG++ +T  D+    LGTCA+F+E QIGSER
Sbjct: 307 FADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSER 361

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =  251 bits (644), Expect = 6e-76
 Identities = 102/179 (56%), Positives = 140/179 (78%)

Query: 33  KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            K +K   E   E  ++YQ +VDAEW++++EKL ++  +GA +VLSKLPIGD+ATQ+FAD
Sbjct: 250 LKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFAD 309

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
           R++FCAGRV  +D+ R ++A GG++ +T  D+    LGTCA+F+E QIGSER+N+F GC 
Sbjct: 310 RNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCP 369

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
            A+TCT+++RGGAEQ + E ERSLHDAIMIV+R ++N  +VAGGGA EME+SK LRDYS
Sbjct: 370 QAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =  117 bits (295), Expect = 7e-28
 Identities = 54/83 (65%), Positives = 72/83 (86%)

Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           GFE QPK + NPKI  LN+ELELKAE+DNAE+R++ VE+YQ +VDAEW++++EKL ++  
Sbjct: 228 GFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE 287

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           +GA +VLSKLPIGD+ATQ+FADR
Sbjct: 288 TGANIVLSKLPIGDLATQFFADR 310

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score =  380 bits (978), Expect = e-125
 Identities = 105/372 (28%), Positives = 165/372 (44%), Gaps = 68/372 (18%)

Query: 320 SQVFRQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           SQ+F   +   L  G E   G      N+ A  AV + V+++LGP G+DK++VD  G  T
Sbjct: 2   SQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFT 61

Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--------------------------- 412
           ++NDGATI+ LLD+ HPA K LV++A+ QD EI                           
Sbjct: 62  VTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIH 121

Query: 413 -----------------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVV 449
                                    S     +  L   A T++SSK+I     FFS MVV
Sbjct: 122 PTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVV 181

Query: 450 DAVMSLDDL-------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK 502
           DA++++           P+  + + K  G +  +SLLV G +   T A       PK   
Sbjct: 182 DALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQA---MPKRIA 238

Query: 503 --NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS 560
             N KIA L++ L+        +I +D  E+ +++   E  I+ E++ KI  +GAQVVL+
Sbjct: 239 GGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLT 298

Query: 561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTC 614
              I D+  + F +  +    R  +EDL+R  +A G  ++++  +L        S LG C
Sbjct: 299 TKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLC 358

Query: 615 AVFDERQIGSER 626
               + +   + 
Sbjct: 359 DEVVQAKFSDDE 370

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score =  241 bits (618), Expect = 4e-72
 Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
           K +     +   ++P++ +++   E  I+ E++ KI  +GAQVVL+   I D+  + F +
Sbjct: 253 KARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVE 312

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDL------NDSVLGTCAVFDERQIGSERFN 146
             +    R  +EDL+R  +A G  ++++  +L        S LG C    + +   +   
Sbjct: 313 AKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECI 372

Query: 147 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
           +  G     + +II+RG  +  L+E ERSLHD++ +V+RT+ +  VV GGG +E  L+  
Sbjct: 373 LIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIY 432

Query: 207 LRDYS 211
           L +++
Sbjct: 433 LDNFA 437

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score =  106 bits (267), Expect = 2e-24
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 236 EMQPKTYK--NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           +  PK     N KIA L++ L+        +I +D  E+ +++   E  I+ E++ KI  
Sbjct: 231 QAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIID 290

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           +GAQVVL+   I D+  + F + 
Sbjct: 291 AGAQVVLTTKGIDDLCLKEFVEA 313

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score =  378 bits (974), Expect = e-125
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 55/354 (15%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
             Q  +L E  +   G+     NI A + + + VR+TLGP+GMDK++VD  G   ++NDG
Sbjct: 2   SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
            TI++ + + HPAAK L+++AK+Q+                                   
Sbjct: 62  VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVV 121

Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
                           I      + + +L K A T+++ K   + K   ++++V+AV ++
Sbjct: 122 KGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV 181

Query: 456 DDL---LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
            D    +  ++I I+K +G +++D+ L+ GV   K    A     PK   + KIALLN  
Sbjct: 182 VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQ---MPKKVTDAKIALLNCA 238

Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
           +E+K    +AEIR+    +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y 
Sbjct: 239 IEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 298

Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           A   +  A RV + D+++  KA G  V+     L+   LG   + +ER+I  + 
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDS 352

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score =  248 bits (635), Expect = 8e-75
 Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            K+ E + E    +P +  + ++ E K+L + + +I ASGA V+  +  I D+A  Y A 
Sbjct: 241 IKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 300

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             +  A RV + D+++  KA G  V+     L+   LG   + +ER+I  +       CK
Sbjct: 301 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 360

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           + +  T+++RG  E  +EE  R++ DA+ +V  TI +  +V+GGG+ E+ELS  LR+Y+
Sbjct: 361 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 419

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score =  111 bits (280), Expect = 6e-26
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK   + KIALLN  +E+K    +AEIR+    +  + ++ E K+L + + +I ASGA 
Sbjct: 223 MPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGAN 282

Query: 298 VVLSKLPIGDVATQYFADR 316
           V+  +  I D+A  Y A  
Sbjct: 283 VLFCQKGIDDLAQHYLAKE 301

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score =  374 bits (962), Expect = e-123
 Identities = 80/360 (22%), Positives = 148/360 (41%), Gaps = 60/360 (16%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
             ++          + +    +NI A ++V DA+RT+LGP+GMDK+I    G+  ISNDG
Sbjct: 2   SAKVPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDA---------------------------------- 410
            TI+K + I+HP A+ LV+++ +QD+                                  
Sbjct: 62  HTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIA 121

Query: 411 ---------------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
                          E+    S   R  L + A+T+LSSK++ Q   F + + VD+V+ +
Sbjct: 122 DSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKI 181

Query: 456 DDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNI 511
            D     + LN I + K  GG ++D+ ++DGV   +T   +     P   +  KI L+  
Sbjct: 182 SDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKS--AGGPTRKEKAKIGLIQF 239

Query: 512 ELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GD 566
           ++          I ++   +  K++  E   L     KI  +   V+L +  I      D
Sbjct: 240 QISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVND 299

Query: 567 VATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
           +A  + +  ++     +  E+++   K  G   +       +  L +  + +E      +
Sbjct: 300 LALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSK 359

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score =  232 bits (593), Expect = 8e-69
 Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVAT 87
             K + E      +  +  K++  E   L     KI  +   V+L +  I      D+A 
Sbjct: 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLAL 302

Query: 88  QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNV 147
            + +  ++     +  E+++   K  G   +       +  L +  + +E      +   
Sbjct: 303 HFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVR 362

Query: 148 FSGCKNA---RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELS 204
            +G +N     T ++++RG     ++ETERSLHDA+ ++R  ++   ++AGGGA E+E+S
Sbjct: 363 VTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEIS 422

Query: 205 KALRDYS 211
           + L   +
Sbjct: 423 RRLSKEA 429

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score =  106 bits (266), Expect = 2e-24
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
              P   +  KI L+  ++          I ++   +  K++  E   L     KI  + 
Sbjct: 223 AGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAK 282

Query: 296 AQVVLSKLPI-----GDVATQYFADR 316
             V+L +  I      D+A  + +  
Sbjct: 283 CNVLLIQKSILRDAVNDLALHFLSKL 308

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score =  374 bits (962), Expect = e-123
 Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 59/357 (16%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           QP I +LKEGT+   GK  +  NI A  A+ ++VR++LGPRGMDK++VD  G   I+NDG
Sbjct: 5   QP-IFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDG 63

Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
            TI+K +D+ HPAAK +V+                                       I+
Sbjct: 64  VTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVIS 123

Query: 406 K-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
           +     S++A     EI      + + LL K A T+L+SK     K   +++  +AV S+
Sbjct: 124 EGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSV 183

Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
            +L      +  + I + K  GGA++D+ L++G+   K   + G    P   K+ KIALL
Sbjct: 184 AELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAKIALL 240

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           +  LE+K    +  +R++     QK +  E  +L E +DKI + GA VV+++  I D+A 
Sbjct: 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQ 300

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            Y +   ++   RV + D+ +  KA G ++++T  +++ S LGT    ++ ++G + 
Sbjct: 301 HYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 357

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score =  248 bits (636), Expect = 6e-75
 Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E +     E+P   QK +  E  +L E +DKI + GA VV+++  I D+A  Y + 
Sbjct: 246 IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR 305

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + D+ +  KA G ++++T  +++ S LGT    ++ ++G +     +GCK
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           N +  +I+VRG  E  ++E ERS+ D++ +V   + + A  AGGGA   E++  LR Y+
Sbjct: 366 NPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYA 424

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score =  110 bits (278), Expect = 8e-26
 Identities = 27/79 (34%), Positives = 43/79 (54%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            P   K+ KIALL+  LE+K    +  +R++     QK +  E  +L E +DKI + GA 
Sbjct: 228 MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGAN 287

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV+++  I D+A  Y +  
Sbjct: 288 VVITQKGIDDMAQHYLSRA 306

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score =  371 bits (954), Expect = e-121
 Identities = 113/357 (31%), Positives = 187/357 (52%), Gaps = 58/357 (16%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
              +++LKEG+  + GK  + +NI A +AV +A+++T GPRGMDK++VD  G  TI+NDG
Sbjct: 13  GIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDG 72

Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
           ATI+  +D+ HPAAK LV                                        I 
Sbjct: 73  ATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIII 132

Query: 406 K-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
                  + A     E+ ++ S     LL K A T+LSSK +   + + + +VV AV  +
Sbjct: 133 SGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQV 192

Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
            +L      + L+ I I K AGG++ D+ LV G+   K   + G    PK  +N KIAL+
Sbjct: 193 AELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKRLENAKIALI 249

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           +  LE++    +AEIR++   + QK +D E  ++ EK+DKI A+GA V++ +  I +VA 
Sbjct: 250 DASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQ 309

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            Y A + +    R  + DL++  +A GG V++   ++++  LG  ++ +ER++G ++
Sbjct: 310 SYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDK 366

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score =  247 bits (632), Expect = 3e-74
 Identities = 62/179 (34%), Positives = 112/179 (62%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            +K E + E    +P + QK +D E  ++ EK+DKI A+GA V++ +  I +VA  Y A 
Sbjct: 255 VEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAK 314

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
           + +    R  + DL++  +A GG V++   ++++  LG  ++ +ER++G ++     G K
Sbjct: 315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAK 374

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           N ++ +I++RGG E+ ++ETER+L DA+  V   I++   +AGGGA+E+E++K LR Y+
Sbjct: 375 NPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYA 433

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score =  109 bits (276), Expect = 2e-25
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK  +N KIAL++  LE++    +AEIR++   + QK +D E  ++ EK+DKI A+GA 
Sbjct: 237 MPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGAN 296

Query: 298 VVLSKLPIGDVATQYFADR 316
           V++ +  I +VA  Y A +
Sbjct: 297 VIICQKGIDEVAQSYLAKK 315

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score =  369 bits (951), Expect = e-121
 Identities = 72/364 (19%), Positives = 138/364 (37%), Gaps = 68/364 (18%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           + LL    E+ +    L  N+ + + +   + T LGP+G  K++VD  G   ++ DG  +
Sbjct: 3   LQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVL 62

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAE------------------------------------ 411
           +  + I  P A  +   A +QD                                      
Sbjct: 63  LTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGF 122

Query: 412 ---------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLD 456
                          I K++    R  L + A ++L +K+        + +V DAV+S+ 
Sbjct: 123 EIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVY 182

Query: 457 DL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE 512
           D     L L+M+ I ++   + +D+  + G+       +      P   KN  + +LN+ 
Sbjct: 183 DAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD---MPTRVKNAYVLILNVS 239

Query: 513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKL 562
           LE +    N+     S ++  K+  +E K +  KL KI                V++++ 
Sbjct: 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQK 299

Query: 563 PIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI 622
            I  ++   FA  ++    R    +++R     GG    +  DL+  +LG   +  +  I
Sbjct: 300 GIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETI 359

Query: 623 GSER 626
           G E+
Sbjct: 360 GEEK 363

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score =  233 bits (598), Expect = 2e-69
 Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 13/195 (6%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKI----------HASGAQVVLSKLPI 82
            +K E          D+  K+  +E K +  KL KI                V++++  I
Sbjct: 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGI 301

Query: 83  GDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS 142
             ++   FA  ++    R    +++R     GG    +  DL+  +LG   +  +  IG 
Sbjct: 302 DPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE 361

Query: 143 ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEME 202
           E+F   +   + ++CTI+++G     L +T+ ++ D +  V   +++  ++ G GA  + 
Sbjct: 362 EKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIA 421

Query: 203 LSKALRDYSGLGDKV 217
           LS+ LR  +      
Sbjct: 422 LSRYLRSANMNKLGA 436

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score =  101 bits (253), Expect = 1e-22
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI------ 291
            P   KN  + +LN+ LE +    N+     S ++  K+  +E K +  KL KI      
Sbjct: 224 MPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNE 283

Query: 292 ----HASGAQVVLSKLPIGDVATQYFADR 316
                     V++++  I  ++   FA  
Sbjct: 284 VCGMDPDKGFVIINQKGIDPMSLDVFAKH 312

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score =  367 bits (945), Expect = e-120
 Identities = 98/354 (27%), Positives = 160/354 (45%), Gaps = 66/354 (18%)

Query: 336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVH 395
           + S G+     N+ A  ++ + V+++LGP G+DK++VD  G  TI+NDGATI+KLL++ H
Sbjct: 4   DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63

Query: 396 PAAKTLVDIAKSQDAE-------------------------------------------- 411
           PAAK L ++A  QD E                                            
Sbjct: 64  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 123

Query: 412 ------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------- 458
                 +  +     R  L   A T++SSK+I     FF+ +VVDAV+++          
Sbjct: 124 RYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPR 183

Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
            P+N I + K  G +  +S+L++G +        G +  PK   N KIA L+  L+    
Sbjct: 184 YPVNSINVLKAHGRSQMESMLINGYALNC---VVGSQGMPKRIVNAKIACLDFSLQKTKM 240

Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
           +   ++ +   E+  ++   E  I  E++ KI A+GA V+L+   I D+  +YF +    
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300

Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLND------SVLGTCAVFDERQIGSER 626
              RV + DLKR  KA G  V++T  +L        S+LG      + +I  + 
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 354

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score =  241 bits (617), Expect = 3e-72
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 9/185 (4%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
           K K +   +    +P++  ++   E  I  E++ KI A+GA V+L+   I D+  +YF +
Sbjct: 237 KTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVE 296

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLND------SVLGTCAVFDERQIGSERFN 146
                  RV + DLKR  KA G  V++T  +L        S+LG      + +I  +   
Sbjct: 297 AGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELI 356

Query: 147 VFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKA 206
           +    K   + ++I+RG  +   +E ERSLHDA+ +V+R + + +VV GGGA+E  LS  
Sbjct: 357 LIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIY 416

Query: 207 LRDYS 211
           L +Y+
Sbjct: 417 LENYA 421

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score =  115 bits (290), Expect = 2e-27
 Identities = 24/83 (28%), Positives = 42/83 (50%)

Query: 234 GFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA 293
           G +  PK   N KIA L+  L+    +   ++ +   E+  ++   E  I  E++ KI A
Sbjct: 215 GSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILA 274

Query: 294 SGAQVVLSKLPIGDVATQYFADR 316
           +GA V+L+   I D+  +YF + 
Sbjct: 275 TGANVILTTGGIDDMCLKYFVEA 297

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score =  369 bits (949), Expect = e-120
 Identities = 75/370 (20%), Positives = 140/370 (37%), Gaps = 64/370 (17%)

Query: 321 QVFRQPQILLLKEGTEN-SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKST 379
           ++ + P   L K+G  + S    Q+I +I A + +     T++GP G +K+IV+  GK  
Sbjct: 4   RLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKII 63

Query: 380 ISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE---------------------------- 411
           I+ND AT+++ LDIVHPA K LV   + Q  +                            
Sbjct: 64  ITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLS 123

Query: 412 -----------------------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMV 448
                                  + +      +  L K     +SSK    +    S++V
Sbjct: 124 AVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSED-ILSELV 182

Query: 449 VDAVMSL---------DDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPK 499
            +AV  +              ++ I + K+ GG+L +S ++ G+ F +     G      
Sbjct: 183 SEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNRE--PEGHVKSLS 240

Query: 500 TYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVL 559
             K  K+A+    L++        + L + +E       E K +   + +I   G + ++
Sbjct: 241 EDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIV 300

Query: 560 SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDE 619
           +   +G++A  Y     +       + +L+R  + CG   +          LG       
Sbjct: 301 AGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKT 360

Query: 620 RQIGSERDTL 629
            +IG +R T+
Sbjct: 361 MEIGGDRVTV 370

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score =  228 bits (584), Expect = 4e-67
 Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 7/183 (3%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
               E +         E       E K +   + +I   G + +++   +G++A  Y   
Sbjct: 256 IANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR 315

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFS--G 150
             +       + +L+R  + CG   +          LG        +IG +R  VF    
Sbjct: 316 YGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQ 375

Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA--VVAGGGAIEMELSKALR 208
            + +RT TII+RG  +  L++ ER++ D +  V+  ++     ++ G GA E+EL   + 
Sbjct: 376 GEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRIT 435

Query: 209 DYS 211
            Y 
Sbjct: 436 KYG 438

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score =  110 bits (277), Expect = 1e-25
 Identities = 15/85 (17%), Positives = 33/85 (38%)

Query: 232 PDGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKI 291
           P+G        K  K+A+    L++        + L + +E       E K +   + +I
Sbjct: 232 PEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEI 291

Query: 292 HASGAQVVLSKLPIGDVATQYFADR 316
              G + +++   +G++A  Y    
Sbjct: 292 ADMGVECIVAGAGVGELALHYLNRY 316

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score =  366 bits (941), Expect = e-120
 Identities = 89/354 (25%), Positives = 147/354 (41%), Gaps = 59/354 (16%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGK-STISNDGAT 386
           + +  +     + +   +S      AV D V++TLGP+GMDKL+   +     ++NDGAT
Sbjct: 3   VQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGAT 62

Query: 387 IMKLLDIVHPA--------------------------------AKTLVD--------IAK 406
           I+K + + +PA                                A+ L+D        I +
Sbjct: 63  ILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE 122

Query: 407 S-------------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVM 453
                         + A     D   +R  L   A T LSSK++ Q K  F+++  +A++
Sbjct: 123 GYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAIL 182

Query: 454 SLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL 513
            L     L  I I K+ GG L DS L +G    K F       QPK  +N KI + N  L
Sbjct: 183 RLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFG----NNQPKRIENAKILIANTTL 238

Query: 514 EL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYF 572
           +  K +    + ++DS  +  ++  AE + +  K+ KI   G    +++  I D   Q F
Sbjct: 239 DTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLF 298

Query: 573 ADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            D  +        E ++R     GG V++T  + +   LG C V +E  +G + 
Sbjct: 299 TDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQP 352

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score =  250 bits (642), Expect = 7e-76
 Identities = 56/180 (31%), Positives = 90/180 (50%)

Query: 32  KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
             K K    + + +   +  ++  AE + +  K+ KI   G    +++  I D   Q F 
Sbjct: 240 TDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFT 299

Query: 92  DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
           D  +        E ++R     GG V++T  + +   LG C V +E  +G + F  FSGC
Sbjct: 300 DLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGC 359

Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           K    CTI++RG  +Q L+E ERSLHDA+ ++ +T +    V GGG  EM +SKA+   +
Sbjct: 360 KAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEA 419

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score =  113 bits (285), Expect = 1e-26
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 236 EMQPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 294
             QPK  +N KI + N  L+  K +    + ++DS  +  ++  AE + +  K+ KI   
Sbjct: 220 NNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF 279

Query: 295 GAQVVLSKLPIGDVATQYFADR 316
           G    +++  I D   Q F D 
Sbjct: 280 GINTFINRQLIYDYPEQLFTDL 301

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score =  362 bits (932), Expect = e-119
 Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 59/348 (16%)

Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVD--QNGKSTISNDGATIMKLL 391
           G +  + +   +S+     A+ D V++TLGP+GMDK+++   ++    ++NDGATI+K +
Sbjct: 2   GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNI 61

Query: 392 DIVHPA--------------------------------AKTLVD-------IAKS----- 407
            + +PA                                A++L+        I        
Sbjct: 62  GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121

Query: 408 --------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLL 459
                     A    SD  ++R  L   A T LSSKL+   K  F+K+ V+AV+ L    
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181

Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAE 518
            L  I + K  GG+L DS L +G    K         QPK  +N KI + N  ++  K +
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKIK 237

Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
              + +R+DS  +  ++  AE + + EK+++I   G    +++  I +   Q F    + 
Sbjct: 238 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVM 297

Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
                    ++R     GG + +T        LG+C + +E  IG ++
Sbjct: 298 AIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDK 345

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score =  253 bits (649), Expect = 4e-77
 Identities = 47/180 (26%), Positives = 85/180 (47%)

Query: 32  KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
             K K        +   +  ++  AE + + EK+++I   G    +++  I +   Q F 
Sbjct: 233 TDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFG 292

Query: 92  DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
              +          ++R     GG + +T        LG+C + +E  IG ++   FSG 
Sbjct: 293 AAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGV 352

Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
                CTI++RG  +Q L+E ERSLHDA+ ++ +T+++   V GGG  EM ++ A+   +
Sbjct: 353 ALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLA 412

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score =  113 bits (286), Expect = 8e-27
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 238 QPKTYKNPKIALLNIELEL-KAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
           QPK  +N KI + N  ++  K +   + +R+DS  +  ++  AE + + EK+++I   G 
Sbjct: 215 QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI 274

Query: 297 QVVLSKLPIGDVATQYFADR 316
              +++  I +   Q F   
Sbjct: 275 NCFINRQLIYNYPEQLFGAA 294

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score =  362 bits (932), Expect = e-118
 Identities = 89/368 (24%), Positives = 168/368 (45%), Gaps = 61/368 (16%)

Query: 325 QPQILLLKEGTENSQ-GKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISND 383
           +P I++  +G +  Q G     S+I A ++V   ++T+LGPRG+DK+++  +G+ TI+ND
Sbjct: 27  RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITND 86

Query: 384 GATIMKLLDIVHP--------------------------------AAKTLVD-------I 404
           GATI+  +++ +                                  A  L+        I
Sbjct: 87  GATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKI 146

Query: 405 AK-----SQDA---------EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVD 450
           A      ++ A         +I  S+   +R  L + A T+L SK++ +    F++M V+
Sbjct: 147 ANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVE 206

Query: 451 AVMSLDDL----LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE---MQPKTYKN 503
           AV+++ D     +  ++I ++   GG++ DS L++GV   K F++       +  +    
Sbjct: 207 AVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDG 266

Query: 504 PKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLP 563
            K+A+L    E    +   ++ + SVEEYQK+   E     E +D +  +GA VV+ +  
Sbjct: 267 VKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWG 326

Query: 564 IGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIG 623
             D A       D+     V  ++L+    +  G ++    DL+   LGTC+   E++ G
Sbjct: 327 FDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386

Query: 624 SERDTLNR 631
           + +D +  
Sbjct: 387 TTKDRMLI 394

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score =  244 bits (625), Expect = 4e-73
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 5/181 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
             K + + +      +EYQK+   E     E +D +  +GA VV+ +    D A      
Sbjct: 278 PPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQ 337

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSG 150
            D+     V  ++L+    +  G ++    DL+   LGTC+   E++ G+  +R  +   
Sbjct: 338 NDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397

Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
            K  +T T  VRG  +  ++E ER+LHD++ +VR  +++  VV GGGA E+ +S A+ + 
Sbjct: 398 SKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEE 457

Query: 211 S 211
           +
Sbjct: 458 A 458

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score =  109 bits (275), Expect = 2e-25
 Identities = 20/80 (25%), Positives = 34/80 (42%)

Query: 237 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 296
           +  +     K+A+L    E    +   ++ + SVEEYQK+   E     E +D +  +GA
Sbjct: 259 LPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGA 318

Query: 297 QVVLSKLPIGDVATQYFADR 316
            VV+ +    D A       
Sbjct: 319 DVVICQWGFDDEANHLLLQN 338

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score =  359 bits (925), Expect = e-118
 Identities = 89/351 (25%), Positives = 147/351 (41%), Gaps = 63/351 (17%)

Query: 334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI 393
             +  +      SNI+A +AV DA+RT+LGP+GMDK+I D  G  TI+NDGATI+K + +
Sbjct: 3   YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQV 62

Query: 394 VHPAAKTLVDIAKSQDAE------------------------------------------ 411
           +HPAA+ LV+++K+QD E                                          
Sbjct: 63  LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 122

Query: 412 -------IQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL-----L 459
                  + +      R  L   AAT+L+SK++ Q     S M VDAVM + D      +
Sbjct: 123 GIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSV 182

Query: 460 PLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER 519
            L  I I K  GG ++D  LV+G+   +  A +G        +  KI L+   L      
Sbjct: 183 DLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSG----ITRVEKAKIGLIQFCLSAPKTD 238

Query: 520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFAD 574
            + +I +    +  +V+  E   +   + +I  +G  V+L +  I      D+A  +   
Sbjct: 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 298

Query: 575 RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 625
             +     +  ED++   K  G   +         +LG+  + +E  +   
Sbjct: 299 MKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS 349

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score =  229 bits (587), Expect = 5e-68
 Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVAT 87
             K + + +    +  +  +V+  E   +   + +I  +G  V+L +  I      D+A 
Sbjct: 234 APKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLAL 293

Query: 88  QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQI-GSERFN 146
            +     +     +  ED++   K  G   +         +LG+  + +E  + GS +  
Sbjct: 294 HFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLI 353

Query: 147 VFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSK 205
             +GC +  +T TI+VRG  +  +EE ERS+HDA+ ++R  ++  A++AGGGA E+EL+ 
Sbjct: 354 KITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAL 413

Query: 206 ALRDYS 211
            L +YS
Sbjct: 414 RLTEYS 419

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score =  101 bits (254), Expect = 7e-23
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
                +  KI L+   L       + +I +    +  +V+  E   +   + +I  +G  
Sbjct: 216 GITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCN 275

Query: 298 VVLSKLPI-----GDVATQYFADR 316
           V+L +  I      D+A  +    
Sbjct: 276 VLLIQKSILRDALSDLALHFLNKM 299

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score =  359 bits (923), Expect = e-117
 Identities = 105/357 (29%), Positives = 165/357 (46%), Gaps = 58/357 (16%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
              +++L EGT+   G+     NI A + + + VRTTLGP+GMDK++VD  G   ++ND 
Sbjct: 6   GQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDC 65

Query: 385 ATIMKLLDIVHPAAKTLVD---------------------------------------IA 405
           ATI+  +D+ HPAAK +V+                                       I 
Sbjct: 66  ATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIT 125

Query: 406 KS-----QDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL 455
           K      + A     EI      +    L K AAT+++ K     K   +K+ V+AV  +
Sbjct: 126 KGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQV 185

Query: 456 DDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL 509
            +       + L+ I  +K AG  +E+S LV GV   K   +      PK  +N KIAL+
Sbjct: 186 AEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPR---MPKRVENAKIALI 242

Query: 510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVAT 569
           N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA VV  +  I D+A 
Sbjct: 243 NEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQ 302

Query: 570 QYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
            Y A   +    RV + D+++  KA G  ++T   DL    LG   V +ER++  E 
Sbjct: 303 HYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN 359

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score =  246 bits (631), Expect = 4e-74
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E + +     PD+    ++ E K+L + +D I  +GA VV  +  I D+A  Y A 
Sbjct: 248 VKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAK 307

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             +    RV + D+++  KA G  ++T   DL    LG   V +ER++  E      GCK
Sbjct: 308 YGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCK 367

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           N +  TI++RGG E  ++E ER+L DA+ +V+  + + AV+  GGA E+EL+  L +Y+
Sbjct: 368 NPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYA 426

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score =  110 bits (277), Expect = 1e-25
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK  +N KIAL+N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA 
Sbjct: 230 MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 289

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV  +  I D+A  Y A  
Sbjct: 290 VVFVQKGIDDLAQHYLAKY 308

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  353 bits (909), Expect = e-115
 Identities = 80/354 (22%), Positives = 150/354 (42%), Gaps = 58/354 (16%)

Query: 333 EGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLD 392
           +      G   L S+I A +AV + ++T+LGP G+DK++VD++G  T++NDGATI+ ++D
Sbjct: 1   DRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMD 60

Query: 393 IVHPAAKTLVD---------------------------------------IAKS------ 407
           + H  AK +V+                                       IA        
Sbjct: 61  VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR 120

Query: 408 ------QDAEIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL--- 458
                            +    L + A T L SK+++      +++ V+AV+++ D+   
Sbjct: 121 IAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRR 180

Query: 459 -LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
            +   +I ++   GG LED+ L+ GV   K F++      PK  ++ KIA+L    E   
Sbjct: 181 DVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQ---MPKQVEDAKIAILTCPFEPPK 237

Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
            +   ++ + SVE+++ +   E +   E + +I  +GA + + +    D A       D+
Sbjct: 238 PKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDL 297

Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNR 631
                V   +++    A GG ++    +L    LG   +  E   G+ +D +  
Sbjct: 298 PAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLV 351

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  241 bits (618), Expect = 1e-72
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
             K + + +      ++++ +   E +   E + +I  +GA + + +    D A      
Sbjct: 235 PPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQ 294

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSG 150
            D+     V   +++    A GG ++    +L    LG   +  E   G+  ++  V   
Sbjct: 295 NDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQ 354

Query: 151 CKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDY 210
           CKN+R  TI +RGG +  +EE +RSLHDA+ ++R  IR++ VV GGGA E+  + A+   
Sbjct: 355 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE 414

Query: 211 S 211
           +
Sbjct: 415 A 415

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  109 bits (275), Expect = 2e-25
 Identities = 17/79 (21%), Positives = 35/79 (44%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK  ++ KIA+L    E    +   ++ + SVE+++ +   E +   E + +I  +GA 
Sbjct: 217 MPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGAN 276

Query: 298 VVLSKLPIGDVATQYFADR 316
           + + +    D A       
Sbjct: 277 LAVCQWGFDDEANHLLLQN 295

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score =  352 bits (907), Expect = e-115
 Identities = 69/352 (19%), Positives = 136/352 (38%), Gaps = 61/352 (17%)

Query: 333 EGTENSQGKPQ-LISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLL 391
           EG ++  G  + +  NI AC+ +    RT  GP GM+K++++   K  ++ND ATI++ L
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60

Query: 392 DIVHPAAKTLVDIAKSQDAEI--------------------------------------- 412
           ++ HPAAK +V  +  Q+ E+                                       
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120

Query: 413 ------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD--- 457
                         + +      +     T++ SK     + F +K++  A +S+     
Sbjct: 121 KKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDSG 179

Query: 458 LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA 517
              ++ I + K+ G  +  S ++ G+ FKK       E    + K+ KIA+ +   +   
Sbjct: 180 HFNVDNIRVCKILGSGVHSSSVLHGMVFKKE-----TEGDVTSVKDAKIAVYSCPFDGMI 234

Query: 518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM 577
                 + + S EE       E  ++  ++  I  +GA VV++   + D+A  Y    ++
Sbjct: 235 TETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNI 294

Query: 578 FCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTL 629
                  + DL+R  K  G   +   +      +G C      ++G  +  +
Sbjct: 295 MLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVV 346

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score =  232 bits (593), Expect = 5e-69
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
               E +     +  +E       E  ++  ++  I  +GA VV++   + D+A  Y   
Sbjct: 232 GMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANK 291

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
            ++       + DL+R  K  G   +   +      +G C      ++G  +  VF   K
Sbjct: 292 YNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEK 351

Query: 153 N-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
                 TI++RG  +  +++ ER++ D +   +   R+  +V GGGA E+EL+K +  Y 
Sbjct: 352 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYG 411

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score =  108 bits (272), Expect = 4e-25
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 235 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 294
            E    + K+ KIA+ +   +         + + S EE       E  ++  ++  I  +
Sbjct: 211 TEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADT 270

Query: 295 GAQVVLSKLPIGDVATQYFADR 316
           GA VV++   + D+A  Y    
Sbjct: 271 GANVVVTGGRVADMALHYANKY 292

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score =  350 bits (900), Expect = e-113
 Identities = 86/372 (23%), Positives = 157/372 (42%), Gaps = 79/372 (21%)

Query: 325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDG 384
           Q  ++ +    E + G+   ISNI A +AV D +RT LGP+ M K+++D  G   ++NDG
Sbjct: 2   QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDG 61

Query: 385 ATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSD--------SGEYRGLLEKCAATALSSKL 436
             I++ +D+ HPAAK++++++++QD E+   D        +GE   +L +C A  L  K 
Sbjct: 62  HAILREIDVAHPAAKSMLELSRTQDEEV--GDGTTTVIILAGE---ILAQC-APYLIEKN 115

Query: 437 IH------------------------------------------------QQKGFFSKMV 448
           IH                                                       ++ 
Sbjct: 116 IHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELA 175

Query: 449 VDAVMSLDDLLP-------------LNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE 495
           +DAV ++   L                 + ++K+ GG + DS ++ GV   K   +    
Sbjct: 176 LDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPK-- 233

Query: 496 MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA 555
              +  +NP++ LL+  LE K       I ++  E++ +++  E + +    ++I A   
Sbjct: 234 -MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRP 292

Query: 556 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-C 614
            +V+++  + D+A  Y          RV + D  R  +  G  ++    DL +S +GT C
Sbjct: 293 TLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNC 352

Query: 615 AVFDERQIGSER 626
            +F    IG E 
Sbjct: 353 GLFKVEMIGDEY 364

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score =  170 bits (432), Expect = 1e-45
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 60/236 (25%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E +     E+ +++ +++  E + +    ++I A    +V+++  + D+A  Y   
Sbjct: 252 YKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLK 311

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGC 151
                  RV + D  R  +  G  ++    DL +S +GT C +F    IG E F+    C
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNC 371

Query: 152 KNARTCTIIVRGGAEQFLEET--------------------------------------- 172
           K   + +       E+   +                                        
Sbjct: 372 KEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGK 431

Query: 173 ------ERSLHDAIM-----------IVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
                      D +            + R  + + ++  GGGA EM +S  L + +
Sbjct: 432 ACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKA 487

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score =  110 bits (278), Expect = 1e-25
 Identities = 16/79 (20%), Positives = 38/79 (48%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
             +  +NP++ LL+  LE K       I ++  E++ +++  E + +    ++I A    
Sbjct: 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPT 293

Query: 298 VVLSKLPIGDVATQYFADR 316
           +V+++  + D+A  Y    
Sbjct: 294 LVITEKGVSDLAQHYLLKG 312

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  347 bits (893), Expect = e-113
 Identities = 74/349 (21%), Positives = 148/349 (42%), Gaps = 60/349 (17%)

Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
           T+   G+     NINA + + D +RT LGP+ M K+++D  G   ++NDG  I++ + + 
Sbjct: 2   TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQ 61

Query: 395 HPA--------------------------------AKTLVD-------IAKS-----QDA 410
           HPA                                A+  ++       +  +      D 
Sbjct: 62  HPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDM 121

Query: 411 -----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL-------DDL 458
                +I        R  +     +++++K+I +       + +DAV ++        ++
Sbjct: 122 ISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181

Query: 459 LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE 518
                  ++K+ GG +EDS ++ GV   K   +       +  KNP+I LL+  LE K  
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKG 238

Query: 519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMF 578
               +I +   E++ +++  E + + +  + I      VV+++  I D+A  Y    ++ 
Sbjct: 239 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 298

Query: 579 CAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
              RV + D  R  +ACG  +++   +L +  +GT A + + ++IG E 
Sbjct: 299 AIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEY 347

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  246 bits (630), Expect = 3e-74
 Identities = 51/180 (28%), Positives = 98/180 (54%), Gaps = 4/180 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E + +      +++ +++  E + + +  + I      VV+++  I D+A  Y   
Sbjct: 235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMR 294

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGC 151
            ++    RV + D  R  +ACG  +++   +L +  +GT A + + ++IG E F   + C
Sbjct: 295 ANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITEC 354

Query: 152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           K+ + CTI++RG +++ L E ER+L DA+ + R  + +  +V GGGA EM ++ AL + S
Sbjct: 355 KDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 414

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  111 bits (280), Expect = 4e-26
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
             +  KNP+I LL+  LE K      +I +   E++ +++  E + + +  + I      
Sbjct: 217 MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPD 276

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV+++  I D+A  Y    
Sbjct: 277 VVITEKGISDLAQHYLMRA 295

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score =  324 bits (832), Expect = e-104
 Identities = 74/353 (20%), Positives = 141/353 (39%), Gaps = 65/353 (18%)

Query: 335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV 394
            E ++ +  L  NI+A + + D +RT LGP+G  K++V   G   ++ DG  ++  + I 
Sbjct: 3   AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ 62

Query: 395 HPA--------------------------------AKTLVD-------IAK-----SQDA 410
           HP                                 A   +        I +      + A
Sbjct: 63  HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKA 122

Query: 411 -----EIQKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSL---DDLLPLN 462
                +++ S   + R  L   A T+L +K+  +     ++ VVD+++++   D+ + L 
Sbjct: 123 LQFLEQVKVSKEMD-RETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLF 181

Query: 463 MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNA 522
           M+ I ++   +  D+ L+ G+       +       K  ++  I   N+ LE +    N+
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDHGARHPDM---KKRVEDAYILTCNVSLEYEKTEVNS 238

Query: 523 EIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIGDVATQYFA 573
                S EE +K+V AE K + +++ KI     +         VV+++  I   +    A
Sbjct: 239 GFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALA 298

Query: 574 DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSER 626
              +    R    +++R   ACGG  + +  DLN   L   A   E  +G E+
Sbjct: 299 KEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEK 351

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score =  228 bits (585), Expect = 8e-68
 Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIG 83
            +K E       +  +E +K+V AE K + +++ KI     +         VV+++  I 
Sbjct: 231 YEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGID 290

Query: 84  DVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSE 143
             +    A   +    R    +++R   ACGG  + +  DLN   L   A   E  +G E
Sbjct: 291 PFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEE 350

Query: 144 RFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMEL 203
           +F     C N R+ T++++G  +  L + + ++ D +  V+  I +  VV G GA+E+ +
Sbjct: 351 KFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 410

Query: 204 SKALRDYS 211
           ++AL  Y 
Sbjct: 411 AEALVKYK 418

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 98.0 bits (245), Expect = 1e-21
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ- 297
            K  ++  I   N+ LE +    N+     S EE +K+V AE K + +++ KI     + 
Sbjct: 214 KKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKV 273

Query: 298 --------VVLSKLPIGDVATQYFADR 316
                   VV+++  I   +    A  
Sbjct: 274 CGDSDKGFVVINQKGIDPFSLDALAKE 300

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score =  292 bits (749), Expect = 6e-92
 Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 59/313 (18%)

Query: 370 LIVDQNGKSTISNDGATIMKLLDIVHPAA------------------------------- 398
           ++VD  G   I+NDGATI+K +DI HPAA                               
Sbjct: 1   MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60

Query: 399 -KTLVD-------IAK-----SQDA-----EIQKSDSGEYRGLLEKCAATALSSKLIHQQ 440
            + L+        I++     ++        I  + S +    L K A TA++ K     
Sbjct: 61  AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120

Query: 441 KGFFSKMVVDAVMSLDD-------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAG 493
           K   S + V AV S+ +       +  L  I I+K AGG+++DS L+DG+   K  ++  
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPN 180

Query: 494 FEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS 553
               P+  +N KI LL+  +E +    ++EI++ S  + Q  +D E K++ E  +K+ AS
Sbjct: 181 M---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237

Query: 554 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT 613
           GA VV  +  I D+A  Y     ++   RV + DLKR  K  G  ++     +    +GT
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT 297

Query: 614 CAVFDERQIGSER 626
             + +E+++   +
Sbjct: 298 AGLVEEKEVRGGK 310

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score =  250 bits (640), Expect = 6e-76
 Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 3/179 (1%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            +K E + E     P + Q  +D E K++ E  +K+ ASGA VV  +  I D+A  Y   
Sbjct: 199 FRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEK 258

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + DLKR  K  G  ++     +    +GT  + +E+++   +    +GC+
Sbjct: 259 AGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQ 318

Query: 153 NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS 211
           N++  T+++ GG E  ++  + +L+DA+ +V   I +  VV GGG+ E+ELS  L +Y+
Sbjct: 319 NSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYA 377

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score =  111 bits (280), Expect = 4e-26
 Identities = 26/79 (32%), Positives = 43/79 (54%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            P+  +N KI LL+  +E +    ++EI++ S  + Q  +D E K++ E  +K+ ASGA 
Sbjct: 181 MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGAN 240

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV  +  I D+A  Y    
Sbjct: 241 VVFCQKGIDDMAQYYIEKA 259

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score =  188 bits (480), Expect = 1e-56
 Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQ 533
           +EDS ++ GV   K   +       +  KNP+I LL+  LE K      +I +   E++ 
Sbjct: 1   MEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 57

Query: 534 KVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK 593
           +++  E + +++  + I      VV+++  I D+A  Y    ++    RV + D  R  +
Sbjct: 58  RILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIAR 117

Query: 594 ACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
           ACG  +++   +L +  +GT A + + ++IG E 
Sbjct: 118 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEY 151

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score =  170 bits (432), Expect = 8e-50
 Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E + +      +++ +++  E + +++  + I      VV+++  I D+A  Y   
Sbjct: 39  YKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMR 98

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSGC 151
            ++    RV + D  R  +ACG  +++   +L +  +GT A + + ++IG E F   + C
Sbjct: 99  ANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDC 158

Query: 152 KNARTCTIIVRGGAEQFLEE 171
           K+ + CTI++RG +      
Sbjct: 159 KDPKACTILLRGASHHHHHH 178

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score =  108 bits (273), Expect = 1e-27
 Identities = 19/79 (24%), Positives = 38/79 (48%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
             +  KNP+I LL+  LE K      +I +   E++ +++  E + +++  + I      
Sbjct: 21  MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV+++  I D+A  Y    
Sbjct: 81  VVITEKGISDLAQHYLMRA 99

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score =  177 bits (451), Expect = 9e-53
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
           + G+   K   ++     P   KN KIAL++  LE+K     A++++    + Q  ++ E
Sbjct: 1   MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQE 57

Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
                + ++KI  SGA VVL +  I DVA  Y A   ++   RV + D+++  KA G  +
Sbjct: 58  TNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117

Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSER 626
           +T   DL  SVLG     +ER+IG +R
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDR 144

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score =  142 bits (360), Expect = 7e-40
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 36  KKKEEEEEE---EEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK E E +    +P + Q  ++ E     + ++KI  SGA VVL +  I DVA  Y A 
Sbjct: 33  IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 92

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + D+++  KA G  ++T   DL  SVLG     +ER+IG +R     GCK
Sbjct: 93  EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152

Query: 153 N 153
           N
Sbjct: 153 N 153

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score =  106 bits (266), Expect = 7e-27
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            P   KN KIAL++  LE+K     A++++    + Q  ++ E     + ++KI  SGA 
Sbjct: 15  MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGAN 74

Query: 298 VVLSKLPIGDVATQYFADR 316
           VVL +  I DVA  Y A  
Sbjct: 75  VVLCQKGIDDVAQHYLAKE 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 85/623 (13%), Positives = 175/623 (28%), Gaps = 192/623 (30%)

Query: 36  KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDV-ATQYFADRD 94
            K+E +      D                   + +   ++V  +  + +V    Y     
Sbjct: 47  SKEEIDHIIMSKDAVSGT--------LRLFWTLLSKQEEMV--QKFVEEVLRINY----- 91

Query: 95  MFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA 154
            F    +  E  + +M            +  D +     VF +  +   R          
Sbjct: 92  KFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYNV--SR---------- 133

Query: 155 RTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAG-GG------AIEMELSKAL 207
                           +    L  A++ +R     + ++ G  G      A++       
Sbjct: 134 ---------------LQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALD-----VC 171

Query: 208 RDYS---GLGDKV------RTGHPSD------NSFHAISPDGFEMQPKTYKNPKIALLNI 252
             Y     +  K+          P           + I P+ +  +     N K+ + +I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSI 230

Query: 253 ELELK---AERD--NAEIRLDSVEEYQKVVDA---EWKILYEKLDKIHASGAQVVLSKLP 304
           + EL+     +   N  + L +V+   K  +A     KIL     K          +   
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 305 IGDVATQYFADRVYTSQVFRQPQILLLKEGT---ENSQGKPQLISNINACQAVVDAVRTT 361
             D  +           +  +   L  +      E     P+ +S I             
Sbjct: 290 SLDHHSMTLTPD-EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAE----------- 335

Query: 362 LGPRGMDKLIVDQNGKSTISN-DGATIMKLLDIVHPAAKTLVDIAKSQDAEIQKSDSGEY 420
                       ++G +T  N       KL  I+              ++ +   +  EY
Sbjct: 336 ----------SIRDGLATWDNWKHVNCDKLTTII--------------ESSLNVLEPAEY 371

Query: 421 RGLLEKCA----ATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED 476
           R + ++ +    +  + + L+      +  ++   VM + + L       K         
Sbjct: 372 RKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKL------HKY-------- 414

Query: 477 SLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDN-AEIRLDSVEEYQKV 535
           SL+               E QPK      I++ +I LELK + +N   +    V+ Y   
Sbjct: 415 SLV---------------EKQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 536 VDAE-WKILYEKLDK-----I--HASGAQVVLSKLPIGDVATQYFAD-RDMFCAGRVPEE 586
              +   ++   LD+     I  H    +             +     R +F   R  E+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIE-----------HPERMTLFRMVFLDFRFLEQ 505

Query: 587 DLKRTMKACG--GAVMTTAHDLN 607
            ++    A    G+++ T   L 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLK 528

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 14  EELRKKKKKKKKKKKKKKKKKKKKKEEEEEEEEPDEYQKVVDAEWKILY-EKLDKIHAS 71
           E +RK +++++K+ ++     K  ++E  E+ + D        EW     E+++K   +
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL------EEWNQRQSEQVEKNKIN 137

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 14  EELRKKKKK------KKKKKKKKKKKKKKKKEEEEEEEEPDE 49
           +E R+K KK      +++ ++ +K K   +  ++   ++PD 
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	632
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	100.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	100.0
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	100.0
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	100.0
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	100.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	100.0
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	100.0
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	100.0
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	100.0
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	100.0
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	99.95
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	99.9
1srv_A	145	Protein (groel (HSP60 class)); chaperone, cell div	99.72
3m6c_A	194	60 kDa chaperonin 1; chaperone, ATP-binding, nucle	99.71
3osx_A	201	60 kDa chaperonin; alpha, beta, apical domain, cha	99.68
1srv_A	145	Protein (groel (HSP60 class)); chaperone, cell div	99.16
3osx_A	201	60 kDa chaperonin; alpha, beta, apical domain, cha	99.05
3m6c_A	194	60 kDa chaperonin 1; chaperone, ATP-binding, nucle	99.05

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.2e-61  Score=538.02  Aligned_cols=300  Identities=76%  Similarity=1.135  Sum_probs=287.6

Q ss_pred             ccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcccc
Q psy17074        332 KEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE  411 (632)
Q Consensus       332 ~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~  411 (632)
                      ++|+++++|.+++.+||.||+.|+++|||||||+||||||+++.|+|+|||||+|||++|+++||+|+|++++|++||++
T Consensus         1 ~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~   80 (515)
T 3iyg_H            1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAE   80 (515)
T ss_pred             CCCccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhce
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c--------------------------------------------------ccCCchhh----HHHHHHHHhhhcCCccc
Q psy17074        412 I--------------------------------------------------QKSDSGEY----RGLLEKCAATALSSKLI  437 (632)
Q Consensus       412 ~--------------------------------------------------~~~~~~~~----~~~L~~va~t~l~sK~~  437 (632)
                      +                                                  .+++. .+    ++.|.++|+|+++||++
T Consensus        81 ~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~-~~~~~~~~~L~~va~tsl~sK~~  159 (515)
T 3iyg_H           81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKK-EDKVEQRKLLEKCAMTALSSKLI  159 (515)
T ss_pred             eCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccccc-CChHHHHHHHHHHHHHHhcCCcc
Confidence            9                                                  11211 12    67889999999999999


Q ss_pred             cchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhh
Q psy17074        438 HQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA  517 (632)
Q Consensus       438 ~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~  517 (632)
                      +.|+++|++|+++|+.+|++++|+++|+|+++.||+..||++++||+|+++|.||||.+||+.++||||++++|+|++++
T Consensus       160 s~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k  239 (515)
T 3iyg_H          160 SQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKA  239 (515)
T ss_pred             cccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEcccccccc
Confidence            99999999999999999998899999999999999999999999999999999999988999999999999999999999


Q ss_pred             ccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074        518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  597 (632)
Q Consensus       518 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa  597 (632)
                      +++++++.++++++++++.++|++++++++++|++.|++||||+++|++.+++||.++||++++++++++|+|||++|||
T Consensus       240 ~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa  319 (515)
T 3iyg_H          240 EKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGG  319 (515)
T ss_pred             cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       598 ~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++++++++||+|++|+++++|+++|+||+|
T Consensus       320 ~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g  354 (515)
T 3iyg_H          320 SIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTG  354 (515)
T ss_pred             EEeeccccCCHHHCCcccEEEEEEEcCeEEEEEec
Confidence            99999999999999999999999999999999986

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=3.1e-61  Score=537.99  Aligned_cols=304  Identities=38%  Similarity=0.609  Sum_probs=277.0

Q ss_pred             cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      ++|..+|++++++++|.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++
T Consensus        13 ~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~   92 (553)
T 3ko1_A           13 GIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQI   92 (553)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHH
T ss_pred             CCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCC
Q psy17074        405 AKSQDAEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSS  434 (632)
Q Consensus       405 a~~q~~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~s  434 (632)
                      |++||+++                          +                        +++. .+++.|.++|+|+++|
T Consensus        93 a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~d~e~L~~vA~tsl~s  171 (553)
T 3ko1_A           93 AKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSI-NDTDLLRKIAMTSLSS  171 (553)
T ss_dssp             HHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCT-TCHHHHHHHHHHHHTT
T ss_pred             hhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHhhH
Confidence            99999999                          1                        1111 2578999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHhccc------CCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEE
Q psy17074        435 KLIHQQKGFFSKMVVDAVMSLDDL------LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIAL  508 (632)
Q Consensus       435 K~~~~~~~~l~~li~~A~~~v~~~------~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll  508 (632)
                      |+.+.|+++|++|+++|+.+|+++      +|+++|+|+++.||++.||++++||+|+++|.||+   ||++++||||++
T Consensus       172 K~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll  248 (553)
T 3ko1_A          172 KAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPG---MPKRLENAKIAL  248 (553)
T ss_dssp             SSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTT---SCSCCBSCEEEE
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCC---CccccccceEEE
Confidence            999999999999999999999842      78889999999999999999999999999999997   689999999999


Q ss_pred             ecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhH
Q psy17074        509 LNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL  588 (632)
Q Consensus       509 ~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L  588 (632)
                      ++|+|+++++++++++.+++++++.+++++|++++++++++|++.|+|||||+++|++++++||.++||++++++++++|
T Consensus       249 ~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~l  328 (553)
T 3ko1_A          249 IDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDL  328 (553)
T ss_dssp             ECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHH
T ss_pred             ecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        589 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       589 ~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       329 eria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g  372 (553)
T 3ko1_A          329 EKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEG  372 (553)
T ss_dssp             HHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEES
T ss_pred             HHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEecc
Confidence            99999999999999999999999999999999999999999986

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=8.4e-61  Score=534.50  Aligned_cols=302  Identities=32%  Similarity=0.520  Sum_probs=288.7

Q ss_pred             chhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHH
Q psy17074        326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA  405 (632)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a  405 (632)
                      +| .+|++++++++|.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|
T Consensus         4 ~p-~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a   82 (543)
T 3ruv_A            4 QP-GVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVA   82 (543)
T ss_dssp             CC-CSSCSSEEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             CC-eeecCCcchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHH
Confidence            45 88999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccccc--------------------------c------------------------cCCchhhHHHHHHHHhhhcCCc
Q psy17074        406 KSQDAEI--------------------------Q------------------------KSDSGEYRGLLEKCAATALSSK  435 (632)
Q Consensus       406 ~~q~~~~--------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK  435 (632)
                      ++||+++                          +                        +++. .+++.|.++|+|+++||
T Consensus        83 ~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~d~~~L~~va~tsl~sK  161 (543)
T 3ruv_A           83 KTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGA-QDKEILTKIAMTSITGK  161 (543)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCT-TCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCHHHHHHHHHHHhccc
Confidence            9999999                          1                        1111 25789999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHhccc---CCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEeccc
Q psy17074        436 LIHQQKGFFSKMVVDAVMSLDDL---LPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIE  512 (632)
Q Consensus       436 ~~~~~~~~l~~li~~A~~~v~~~---~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~  512 (632)
                      +.+.|+++|++|+++|+.+|+++   +|+++|+|++..||++.||++++||+|+++|.||+   ||++++||||++++++
T Consensus       162 ~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~---m~~~~~n~kIll~~~~  238 (543)
T 3ruv_A          162 GAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQ---MPKKVTDAKIALLNCA  238 (543)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTT---SCSEEEEEEEEEESSC
T ss_pred             ccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCcc---ccccccCcEEEEEccc
Confidence            99999999999999999999854   78889999999999999999999999999999997   6899999999999999


Q ss_pred             chhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHH
Q psy17074        513 LELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTM  592 (632)
Q Consensus       513 Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa  592 (632)
                      |+++++++++++.+++++++.+++++|++++++++++|++.|+|||||+++|++++++||.++||++|+++++.+|+|||
T Consensus       239 Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia  318 (543)
T 3ruv_A          239 IEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLA  318 (543)
T ss_dssp             BSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHH
T ss_pred             ccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        593 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       593 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       319 ~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g  358 (543)
T 3ruv_A          319 KATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEE  358 (543)
T ss_dssp             HHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEC
T ss_pred             HHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEEC
Confidence            9999999999999999999999999999999999999986

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=1e-60  Score=533.98  Aligned_cols=303  Identities=38%  Similarity=0.580  Sum_probs=279.8

Q ss_pred             hhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHH
Q psy17074        327 QILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAK  406 (632)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~  406 (632)
                      |..++++++++.+|.++|.+|+.||..|+++|||||||+||||||++++|+++|||||+|||++|+++||+|+|++++|+
T Consensus         7 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~   86 (545)
T 1a6d_A            7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK   86 (545)
T ss_dssp             ----------CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred             cccccCCcchhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccc
Q psy17074        407 SQDAEI--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       407 ~q~~~~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +||+++                          +|..                     ...+++.|.++|+|+|+||+.++
T Consensus        87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~~~~~~~l~~va~tsl~sKi~~~  166 (545)
T 1a6d_A           87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNTGL  166 (545)
T ss_dssp             CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHTTTSSCCS
T ss_pred             hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccc
Confidence            999999                          1100                     00257899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccc
Q psy17074        440 QKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL  513 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~L  513 (632)
                      |+++|++|+++|+.+|++      ++|+++|+|++++|++++||++++||+|+++|.||+   ||++++||||++++++|
T Consensus       167 ~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll~~~~L  243 (545)
T 1a6d_A          167 SNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSK---MPDVVKNAKIALIDSAL  243 (545)
T ss_dssp             THHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTT---SCSEEEEEEEEEECSCB
T ss_pred             cHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCC---CcceecCCEEEEEecCC
Confidence            999999999999999973      377889999999999999999999999999999997   68999999999999999


Q ss_pred             hhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHH
Q psy17074        514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK  593 (632)
Q Consensus       514 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~  593 (632)
                      ++++++.+++|.++++++++++.++|++++++++++|++.|+||||++++|++++++||.++||++|+++++++|+|||+
T Consensus       244 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~  323 (545)
T 1a6d_A          244 EIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAK  323 (545)
T ss_dssp             SCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHH
T ss_pred             CcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        594 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       594 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       324 ~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g  362 (545)
T 1a6d_A          324 ATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG  362 (545)
T ss_dssp             HHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             HhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEec
Confidence            999999999999999999999999999999999999975

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=1.7e-60  Score=532.44  Aligned_cols=303  Identities=35%  Similarity=0.564  Sum_probs=276.0

Q ss_pred             chhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHH
Q psy17074        326 PQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIA  405 (632)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a  405 (632)
                      +|..++++|++..+|.++|.+|+.||..|+++|||||||+||||||++++|+++|||||+|||++|+++||+|+|++++|
T Consensus         5 ~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a   84 (543)
T 1a6d_B            5 QPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVS   84 (543)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHH
T ss_pred             cchhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCc
Q psy17074        406 KSQDAEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSK  435 (632)
Q Consensus       406 ~~q~~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK  435 (632)
                      ++||+++                                                  .+++. .+++.|.++|+|+|+||
T Consensus        85 ~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~-~~~~~l~~va~tsl~sK  163 (543)
T 1a6d_B           85 KTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGA-DEKALLLKMAQTSLNSK  163 (543)
T ss_dssp             TCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCT-THHHHHHHHHHHHHTTS
T ss_pred             HhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhccc
Confidence            9999999                                                  11221 24789999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074        436 LIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL  509 (632)
Q Consensus       436 ~~~~~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~  509 (632)
                      +.++|+++|++|+++|+.++++      ++|+++|+|++++||++.||++++||+|+++|.||+   ||++++||||+++
T Consensus       164 i~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll~  240 (543)
T 1a6d_B          164 SASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPG---MPDVVKDAKIALL  240 (543)
T ss_dssp             GGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTT---SCSEEEEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCC---CcceecCCeEEEE
Confidence            9999999999999999999973      367889999999999999999999999999999996   6899999999999


Q ss_pred             cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074        510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK  589 (632)
Q Consensus       510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~  589 (632)
                      +++|++++++++++|.++++++++++.++|++++++++++|++.|++|||++++|++++++||.++||++|+++++++|+
T Consensus       241 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le  320 (543)
T 1a6d_B          241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMD  320 (543)
T ss_dssp             SSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred             ecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       321 ~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g  363 (543)
T 1a6d_B          321 KLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTG  363 (543)
T ss_dssp             HHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             HHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEec
Confidence            9999999999999999999999999999999999999999975

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=2.4e-60  Score=531.42  Aligned_cols=304  Identities=35%  Similarity=0.534  Sum_probs=287.8

Q ss_pred             cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      ++|..++++++++.+|.++|.+|+.||..|+++|||||||+||||||++++|+++|||||+|||++|+++||+|+|++++
T Consensus         6 ~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~   85 (548)
T 1q3q_A            6 GQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEV   85 (548)
T ss_dssp             ---CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHH
T ss_pred             CCCcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCC
Q psy17074        405 AKSQDAEI--------------------------------------------------QKSDSGEYRGLLEKCAATALSS  434 (632)
Q Consensus       405 a~~q~~~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~s  434 (632)
                      |++||+++                                                  .+++. .+++.|.++|+|+|+|
T Consensus        86 a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~d~~~l~~va~tsl~s  164 (548)
T 1q3q_A           86 AKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDP-DDEETLLKIAATSITG  164 (548)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCT-TCHHHHHHHHHHHSCS
T ss_pred             HHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhc
Confidence            99999999                                                  11211 2478999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEE
Q psy17074        435 KLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIAL  508 (632)
Q Consensus       435 K~~~~~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll  508 (632)
                      |+.++|+++|++|+++|+.+|++      ++|+++|+|++++|++++||++++||+|+++|.||+   ||++++||||++
T Consensus       165 Ki~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll  241 (548)
T 1q3q_A          165 KNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPR---MPKRVENAKIAL  241 (548)
T ss_dssp             STTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTT---SCSEESSEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCC---CcceecCCEEEE
Confidence            99999999999999999999973      377889999999999999999999999999999997   689999999999


Q ss_pred             ecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhH
Q psy17074        509 LNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDL  588 (632)
Q Consensus       509 ~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L  588 (632)
                      ++++|++++++++++|.++++++++++.++|++++++++++|++.|+||||++++|++++++||.++||++|+++++++|
T Consensus       242 ~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~l  321 (548)
T 1q3q_A          242 INEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDM  321 (548)
T ss_dssp             ECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHH
T ss_pred             EecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        589 KRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       589 ~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       322 e~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g  365 (548)
T 1q3q_A          322 EKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEG  365 (548)
T ss_dssp             HHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEec
Confidence            99999999999999999999999999999999999999999986

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=1.3e-61  Score=541.32  Aligned_cols=308  Identities=62%  Similarity=0.998  Sum_probs=285.4

Q ss_pred             ccchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074        324 RQPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVD  403 (632)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~  403 (632)
                      +++|..+|++++++++|.+++.+|+.||+.|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|+++
T Consensus         6 ~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e   85 (550)
T 3p9d_G            6 QTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVD   85 (550)
T ss_dssp             ----------CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHH
T ss_pred             CCcchhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccc--------------------------cc------------------------CCchhh---HHHHHHHHhh
Q psy17074        404 IAKSQDAEI--------------------------QK------------------------SDSGEY---RGLLEKCAAT  430 (632)
Q Consensus       404 ~a~~q~~~~--------------------------~~------------------------~~~~~~---~~~L~~va~t  430 (632)
                      +|++||+++                          +|                        ++. .+   ++.|.++|+|
T Consensus        86 ~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~~~~~L~~vA~t  164 (550)
T 3p9d_G           86 ISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITS-EKSSGRELLERCART  164 (550)
T ss_dssp             HHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCC-C------CHHHHHHH
T ss_pred             HHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC-CcchhHHHHHHHHHH
Confidence            999999999                          11                        111 12   6789999999


Q ss_pred             hcCCccccchhhHHHHHHHHHHHHhc-ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEe
Q psy17074        431 ALSSKLIHQQKGFFSKMVVDAVMSLD-DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALL  509 (632)
Q Consensus       431 ~l~sK~~~~~~~~l~~li~~A~~~v~-~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~  509 (632)
                      +++||+++.|+++|++|+++|+.+|+ +++|+++|+|++++||++.||++++||+|+++|.||||.+||++++||||+++
T Consensus       165 sl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~  244 (550)
T 3p9d_G          165 AMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSL  244 (550)
T ss_dssp             HHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEE
T ss_pred             hccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEEe
Confidence            99999999999999999999999998 67899999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHH
Q psy17074        510 NIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK  589 (632)
Q Consensus       510 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~  589 (632)
                      +++|++++++.++++.+++++++.+++++|++++++++++|++.|++||||+++|++.+++||.++||++++++++.+|+
T Consensus       245 ~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~le  324 (550)
T 3p9d_G          245 NVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMN  324 (550)
T ss_dssp             CSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHHH
T ss_pred             ccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||+++++++++++++||+|+.|+++++|+++|++|+|
T Consensus       325 rIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g  367 (550)
T 3p9d_G          325 RVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQG  367 (550)
T ss_dssp             HHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBC
T ss_pred             HHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEec
Confidence            9999999999999999999999999999999999999999986

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=1.6e-59  Score=521.21  Aligned_cols=295  Identities=29%  Similarity=0.456  Sum_probs=281.6

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCC--CCeEEccChHHHHhhccccChHhHHHHHHHHhcccc
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQN--GKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE  411 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~--g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~  411 (632)
                      |+++++|.++|.+|+.||+.|+++|||||||+||||||++++  |+|+|||||+|||++|+++||+|+|++++|++||++
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e   81 (513)
T 3iyg_B            2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE   81 (513)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence            567889999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             c--------------------------------------------------ccCCch--hhHHHHHHHHhhhcCCccccc
Q psy17074        412 I--------------------------------------------------QKSDSG--EYRGLLEKCAATALSSKLIHQ  439 (632)
Q Consensus       412 ~--------------------------------------------------~~~~~~--~~~~~L~~va~t~l~sK~~~~  439 (632)
                      +                                                  .+++..  .+++.|.++|+|+++||+.++
T Consensus        82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~  161 (513)
T 3iyg_B           82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTH  161 (513)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhccccccc
Confidence            9                                                  111111  147889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhcc
Q psy17074        440 QKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       440 ~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      |.++|++|+++|+.+|++++|+++|+|+++.||+..||++++||+|+++|.|+    ||++++||||++++|+|++++++
T Consensus       162 ~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~----m~~~~en~kIll~~~~Le~~k~e  237 (513)
T 3iyg_B          162 HKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKIK  237 (513)
T ss_pred             chHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC----CceeecCceEEEEcCCccccccc
Confidence            99999999999999999878999999999999999999999999999999887    89999999999999999999999


Q ss_pred             -CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074        520 -DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA  598 (632)
Q Consensus       520 -~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~  598 (632)
                       +++++.+++++++.++.++|++++++++++|++.|+|||||+++|++++++||.++||++|+++++.+|+|||++|||+
T Consensus       238 ~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~  317 (513)
T 3iyg_B          238 IFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGE  317 (513)
T ss_pred             ccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCE
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        599 VMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       599 ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++++++++++++||+|++|++..+|+++|++|+|
T Consensus       318 ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g  351 (513)
T 3iyg_B          318 IASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSG  351 (513)
T ss_pred             EecccccCCHhHCCcccEEEEEEECCeEEEEEec
Confidence            9999999999999999999999999999999985

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.4e-58  Score=515.59  Aligned_cols=296  Identities=33%  Similarity=0.505  Sum_probs=277.7

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      ++++.+|.++|.+|+.||..|+++|||||||+||+|||++++|+++|||||+|||++|+++||+|+|++++|++||+++ 
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G   81 (529)
T 3iyg_A            2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG   81 (529)
T ss_pred             CcchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence            4577899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -------------------------cc---------------------CCc---hhhHHHHHHHHhhhcCCccccchhhH
Q psy17074        413 -------------------------QK---------------------SDS---GEYRGLLEKCAATALSSKLIHQQKGF  443 (632)
Q Consensus       413 -------------------------~~---------------------~~~---~~~~~~L~~va~t~l~sK~~~~~~~~  443 (632)
                                               +|                     ...   ..+++.|.++|+|+++||+.++|+++
T Consensus        82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~  161 (529)
T 3iyg_A           82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDF  161 (529)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHH
Confidence                                     11                     100   01478899999999999999999999


Q ss_pred             HHHHHHHHHHHhc-------ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        444 FSKMVVDAVMSLD-------DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       444 l~~li~~A~~~v~-------~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      |++|+++|+.+|+       .++|+++|+|+++.||++.||++++||+|++++.||+   ||++++||||++++|+|+++
T Consensus       162 i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIlll~~~le~~  238 (529)
T 3iyg_A          162 FANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQG---MPKRIVNAKIACLDFSLQKT  238 (529)
T ss_pred             HHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCccccc---CCcccCCceEEEecCCcccc
Confidence            9999999999996       1466788999999999999999999999999999996   78999999999999999999


Q ss_pred             hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074        517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  596 (632)
Q Consensus       517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG  596 (632)
                      ++++++++.+++++++.++.++|++++++++++|++.|++||||+++|++++++||.++||++|+++++++|+|||++||
T Consensus       239 k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tG  318 (529)
T 3iyg_A          239 KMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG  318 (529)
T ss_pred             cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecccCCC------CCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        597 GAVMTTAHDLN------DSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       597 a~ii~~l~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++++++++++      +++||+|+.|++.++|+++|+||+|
T Consensus       319 a~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g  360 (529)
T 3iyg_A          319 ATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN  360 (529)
T ss_pred             CeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEc
Confidence            99999987765      6789999999999999999999986

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.5e-58  Score=513.80  Aligned_cols=295  Identities=27%  Similarity=0.508  Sum_probs=278.2

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      |+++++|.+++.+|+.||+.|+++|||||||+||||||+++.|+++|||||+|||++|+++||+|+|++++|++||+++ 
T Consensus         1 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G   80 (515)
T 3iyg_G            1 NTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG   80 (515)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence            4577899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccccchhhH
Q psy17074        413 -------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLIHQQKGF  443 (632)
Q Consensus       413 -------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~~~~~~~  443 (632)
                                               +                        +++. .+++.|.++|+|+++||.++.|.++
T Consensus        81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~~l~~va~tsl~sK~i~~~~~~  159 (515)
T 3iyg_G           81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDT-SNRDTMLNIINSSITTKVISRWSSL  159 (515)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHHHHHHhcCCchhhHHHH
Confidence                                     1                        1111 2468899999999999999999999


Q ss_pred             HHHHHHHHHHHhc-c-----cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        444 FSKMVVDAVMSLD-D-----LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       444 l~~li~~A~~~v~-~-----~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      +++++++|+..|. +     ++|++ +|+|++++||++.||++++||+|+++|.||+   ||++++||||++++|+|+++
T Consensus       160 ~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~---m~~~ien~kIll~~~~Le~~  236 (515)
T 3iyg_G          160 ACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYK  236 (515)
T ss_pred             HHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCC---CcceeeeeEEEEEccccccc
Confidence            9999999999886 2     24554 4999999999999999999999999999985   89999999999999999999


Q ss_pred             hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcC
Q psy17074        517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  596 (632)
Q Consensus       517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tG  596 (632)
                      ++++++++.+++++++.+++++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||++||
T Consensus       237 k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tG  316 (515)
T 3iyg_G          237 KGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACG  316 (515)
T ss_pred             ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        597 GAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       597 a~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+++++++++++++||+ |+.|+++++|+++|+||+|
T Consensus       317 a~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g  353 (515)
T 3iyg_G          317 ARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITE  353 (515)
T ss_pred             CeeeccccccChhhcCCcccEEEEEEECCceEEEEeC
Confidence            99999999999999999 9999999999999999986

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=3.4e-59  Score=522.67  Aligned_cols=301  Identities=34%  Similarity=0.502  Sum_probs=284.5

Q ss_pred             hhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074        328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKS  407 (632)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~  407 (632)
                      ..-|+++.++.+|.++|.+|+.||..|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++
T Consensus        10 ~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~   89 (559)
T 3p9d_A           10 SDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQ   89 (559)
T ss_dssp             CCSCCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHH
T ss_pred             cchhhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc--------------------------cc-------------------------CCchhhHHHHHHHHhhhcCCcc
Q psy17074        408 QDAEI--------------------------QK-------------------------SDSGEYRGLLEKCAATALSSKL  436 (632)
Q Consensus       408 q~~~~--------------------------~~-------------------------~~~~~~~~~L~~va~t~l~sK~  436 (632)
                      ||+++                          +|                         ++. .+++.|.++|+|+++||+
T Consensus        90 qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~-~~~e~L~~vA~tsl~sK~  168 (559)
T 3p9d_A           90 QDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDT-LGKETLINIAKTSMSSKI  168 (559)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC---CTTHHHHHHHTTSSSG
T ss_pred             HHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhccCc
Confidence            99999                          11                         110 135679999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHhc-------ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeec--CceEE
Q psy17074        437 IHQQKGFFSKMVVDAVMSLD-------DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK--NPKIA  507 (632)
Q Consensus       437 ~~~~~~~l~~li~~A~~~v~-------~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~--n~kIl  507 (632)
                      +++|+++|++|+++|+.+|+       +.+|++.|+|++++||++.||++++||+|+++|.||+   ||++++  ||||+
T Consensus       169 ~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~---m~~~ie~~n~kIl  245 (559)
T 3p9d_A          169 IGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQA---MPKRIAGGNVKIA  245 (559)
T ss_dssp             GGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTT---SCSEECSSSBCEE
T ss_pred             ccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCC---cceeeccCCceEE
Confidence            99999999999999999997       3588889999999999999999999999999999996   789999  99999


Q ss_pred             EecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchh
Q psy17074        508 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEED  587 (632)
Q Consensus       508 l~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~  587 (632)
                      +++|+|+++++++++++.++++++++++.++|++++++++++|++.|++||||+++|++++++||.++||++|+++++.+
T Consensus       246 l~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~  325 (559)
T 3p9d_A          246 CLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKED  325 (559)
T ss_dssp             EETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHH
T ss_pred             EEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCeEeecc------cCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        588 LKRTMKACGGAVMTTA------HDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       588 L~rIa~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+|||++|||++++++      +++++++||+|++|++.++|+++|+||+|
T Consensus       326 le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g  376 (559)
T 3p9d_A          326 LRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKG  376 (559)
T ss_dssp             HHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEE
T ss_pred             HHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEc
Confidence            9999999999999998      78999999999999999999999999975

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=5.1e-58  Score=509.90  Aligned_cols=296  Identities=28%  Similarity=0.455  Sum_probs=279.6

Q ss_pred             CccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-
Q psy17074        334 GTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-  412 (632)
Q Consensus       334 ~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-  412 (632)
                      .+++.+|.++|.+|+.||..|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++||+++ 
T Consensus         2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~G   81 (515)
T 3iyg_E            2 RKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIG   81 (515)
T ss_pred             cchhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhC
Confidence            3567799999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -------------------------c------------------------cCCc-hhhHHHHHHHHhhhcCCccccchhh
Q psy17074        413 -------------------------Q------------------------KSDS-GEYRGLLEKCAATALSSKLIHQQKG  442 (632)
Q Consensus       413 -------------------------~------------------------~~~~-~~~~~~L~~va~t~l~sK~~~~~~~  442 (632)
                                               +                        +++. ..+++.|.++|+|+++||+++.+.+
T Consensus        82 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~  161 (515)
T 3iyg_E           82 DGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHR  161 (515)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHH
Confidence                                     1                        1110 1236789999999999999998999


Q ss_pred             HHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhc
Q psy17074        443 FFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAE  518 (632)
Q Consensus       443 ~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~  518 (632)
                      +|++++++|+..|.+    ++|+++|+|++++||++.||++++||+|+++|.||+   ||+.++||+|++++|+|++.++
T Consensus       162 ~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~---m~~~~~~~kIall~~~le~~k~  238 (515)
T 3iyg_E          162 QMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQ---MPKQVEDAKIAILTCPFEPPKP  238 (515)
T ss_pred             HHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEeccccccc---ccccCCCceEEEEcCccccccc
Confidence            999999999999974    478899999999999999999999999999999996   6899999999999999999999


Q ss_pred             cCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCe
Q psy17074        519 RDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGA  598 (632)
Q Consensus       519 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~  598 (632)
                      +.++++.++++++++++.++|++++++++++|++.|+|||||+++|++++++||.++||++++++++.+|+|||++|||+
T Consensus       239 ~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~  318 (515)
T 3iyg_E          239 KTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGR  318 (515)
T ss_pred             cccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074        599 VMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE  632 (632)
Q Consensus       599 ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~  632 (632)
                      ++++++++++++||+|++|+++++|+  ++|+||+|
T Consensus       319 ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g  354 (515)
T 3iyg_E          319 IVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQ  354 (515)
T ss_pred             EecccccCCHHHCCcceEEEEEEeccccceEEEEEc
Confidence            99999999999999999999999998  89999976

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=3.8e-59  Score=519.51  Aligned_cols=299  Identities=27%  Similarity=0.423  Sum_probs=284.6

Q ss_pred             cccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccc
Q psy17074        331 LKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDA  410 (632)
Q Consensus       331 ~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~  410 (632)
                      ++.+.++.+|.++|.+|+.||..|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++||+
T Consensus         8 ~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~   87 (528)
T 3p9d_D            8 NATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDS   87 (528)
T ss_dssp             CCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             ccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhhh
Confidence            55677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc--------------------------------------------------ccCCchhhHHHHHHHHhhhcCCccccch
Q psy17074        411 EI--------------------------------------------------QKSDSGEYRGLLEKCAATALSSKLIHQQ  440 (632)
Q Consensus       411 ~~--------------------------------------------------~~~~~~~~~~~L~~va~t~l~sK~~~~~  440 (632)
                      ++                                                  .+++. .+++.|.++|+|+++||+++.|
T Consensus        88 e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~e~l~~va~tsl~sK~~~~~  166 (528)
T 3p9d_D           88 EAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSL-SDREQLVRAASTSLSSKIVSQY  166 (528)
T ss_dssp             HTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCS-CCHHHHHHHHHHHSCSSSCSTT
T ss_pred             hhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCHHHHHHHHHHHhcCCccchh
Confidence            99                                                  11111 1578999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhh
Q psy17074        441 KGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK  516 (632)
Q Consensus       441 ~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~  516 (632)
                      +++|++|+++|+.+|++    .+|+++|+|++++||++.||++++||+|+++|.||+|  ||++++||||++++|+|+++
T Consensus       167 ~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~--m~~~ien~kIll~~~~le~~  244 (528)
T 3p9d_D          167 SSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG--GPTRKEKAKIGLIQFQISPP  244 (528)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSS--CCSEESSEEEEEECCCSSCC
T ss_pred             HHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCccc--CcccccCceEEEEecccccc
Confidence            99999999999999973    4778999999999999999999999999999999986  89999999999999999999


Q ss_pred             hccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCc-----cHHHHHHHHHCCcEEEecCCchhHHHH
Q psy17074        517 AERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLKRT  591 (632)
Q Consensus       517 ~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I-----~~~al~~L~~~~I~~v~~v~~~~L~rI  591 (632)
                      ++++++++.++++++++++.++|++++++++++|++.|+|||||+++|     ++++++||.++||++|+++++.+|+||
T Consensus       245 k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~i  324 (528)
T 3p9d_D          245 KPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFL  324 (528)
T ss_dssp             CCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHH
T ss_pred             ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999     999999999999999999999999999


Q ss_pred             HHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        592 MKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       592 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++|||+++++++++++++||+|+.|++.++|+++|++|+|
T Consensus       325 a~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g  365 (528)
T 3p9d_D          325 SKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTG  365 (528)
T ss_dssp             HHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTT
T ss_pred             HHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEc
Confidence            99999999999999999999999999999999999999975

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=6.9e-59  Score=521.12  Aligned_cols=300  Identities=25%  Similarity=0.405  Sum_probs=283.2

Q ss_pred             chhhhcccCccccCC-chhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        326 PQILLLKEGTENSQG-KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       326 ~~~~~~~~~~~~~~~-~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      +...+|++|+++++| .++|.+|+.||+.|+++|||||||+||||||++++|+++|||||+|||++|+++||+|+|++++
T Consensus         9 ~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~   88 (568)
T 3p9d_H            9 PNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMA   88 (568)
T ss_dssp             CCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHH
T ss_pred             chhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHH
Confidence            456789999999999 5799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc--------------------------c------------------------cC--CchhhHHHHHHHHhhhc
Q psy17074        405 AKSQDAEI--------------------------Q------------------------KS--DSGEYRGLLEKCAATAL  432 (632)
Q Consensus       405 a~~q~~~~--------------------------~------------------------~~--~~~~~~~~L~~va~t~l  432 (632)
                      |++||+++                          +                        +.  +. .+++.|.++|+|++
T Consensus        89 a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~-~~~~~l~~va~tsl  167 (568)
T 3p9d_H           89 TEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDK-NDKNELLKMIKPVI  167 (568)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCC-CTTHHHHHHHHHHH
T ss_pred             HHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC-CCHHHHHHHHHHHh
Confidence            99999999                          0                        11  11 35788999999999


Q ss_pred             CCccccchhhHHHHHHHHHHHHhcc---------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeec-
Q psy17074        433 SSKLIHQQKGFFSKMVVDAVMSLDD---------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYK-  502 (632)
Q Consensus       433 ~sK~~~~~~~~l~~li~~A~~~v~~---------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~-  502 (632)
                      +||+.+++ ++|++|+++|+.+|++         ++|+++|+|++++||++.||++++||+|++++.     +||++++ 
T Consensus       168 ~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~-----~m~~~i~~  241 (568)
T 3p9d_H          168 SSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE-----GHVKSLSE  241 (568)
T ss_dssp             TTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS-----SGGGSCCC
T ss_pred             hccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc-----CCcEEEec
Confidence            99998887 9999999999999974         377889999999999999999999999999984     4899999 


Q ss_pred             --CceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEE
Q psy17074        503 --NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCA  580 (632)
Q Consensus       503 --n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v  580 (632)
                        ||||++++|+|+++++++++++.+++++++.++.++|++++++++++|++.|++||||+++|++.+++||.++||++|
T Consensus       242 ~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI~av  321 (568)
T 3p9d_H          242 DKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVL  321 (568)
T ss_dssp             CSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTCEEE
T ss_pred             CCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCeEEE
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        581 GRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       581 ~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++.+|+|||++|||+++++++++++++||+|+.|++.++|+++|+||+|
T Consensus       322 ~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g  373 (568)
T 3p9d_H          322 KVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQ  373 (568)
T ss_dssp             CCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCC
T ss_pred             ecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEec
Confidence            9999999999999999999999999999999999999999999999999985

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1e-57  Score=507.34  Aligned_cols=293  Identities=30%  Similarity=0.458  Sum_probs=277.8

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc--
Q psy17074        335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--  412 (632)
Q Consensus       335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--  412 (632)
                      .++++|.++|.+|+.||..|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++||+++  
T Consensus         4 ~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GD   83 (518)
T 3iyg_D            4 QDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGD   83 (518)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ------------------------c------------------------cCCchhhHHHHHHHHhhhcCCccccchhhHH
Q psy17074        413 ------------------------Q------------------------KSDSGEYRGLLEKCAATALSSKLIHQQKGFF  444 (632)
Q Consensus       413 ------------------------~------------------------~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l  444 (632)
                                              +                        +++. .+++.|.++|+|+++||+.+.|.++|
T Consensus        84 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~~~l~~vA~tsl~sK~~~~~~~~i  162 (518)
T 3iyg_D           84 GTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVEL-SDRETLLNSAATSLNSKVVSQYSSLL  162 (518)
T ss_pred             CceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCC-CChHHHHHHhHhhhccccchhhHHHH
Confidence                                    1                        1111 15788999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhcc
Q psy17074        445 SKMVVDAVMSLDD-----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       445 ~~li~~A~~~v~~-----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      ++|+++|+.+|++     .+|+++|+|+++.||+..||++++||+|+++|.|    +||++++||||++++|+|++++++
T Consensus       163 ~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~----~mp~~i~n~kIlll~~~Le~~k~~  238 (518)
T 3iyg_D          163 SPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN----SGITRVEKAKIGLIQFCLSAPKTD  238 (518)
T ss_pred             HHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc----CCCccccCceEEEEEeeccccccc
Confidence            9999999999974     3788899999999999999999999999999987    389999999999999999999999


Q ss_pred             CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE-----eCCccHHHHHHHHHCCcEEEecCCchhHHHHHHH
Q psy17074        520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS-----KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  594 (632)
Q Consensus       520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~-----~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~  594 (632)
                      +++++.++++++++++.++|++++++++++|++.|+|||||     +++|++++++||.++||++|+++++.+|+|||++
T Consensus       239 ~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~  318 (518)
T 3iyg_D          239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKT  318 (518)
T ss_pred             cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999     8999999999999999999999999999999999


Q ss_pred             cCCeEeecccCCCCCCCeeeeEEEEEEEcC-eEEEEecC
Q psy17074        595 CGGAVMTTAHDLNDSVLGTCAVFDERQIGS-ERDTLNRE  632 (632)
Q Consensus       595 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~  632 (632)
                      |||+++++++++++++||+|++|++.++|+ ++|+||+|
T Consensus       319 tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g  357 (518)
T 3iyg_D          319 IGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITG  357 (518)
T ss_pred             hCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEEC
Confidence            999999999999999999999999999999 89999986

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=6.4e-59  Score=520.72  Aligned_cols=304  Identities=26%  Similarity=0.490  Sum_probs=283.6

Q ss_pred             cchhhhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHH
Q psy17074        325 QPQILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDI  404 (632)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~  404 (632)
                      ++|..+|++++++++|.++|.+|+.||..|+++|+|||||+||||||++++|+|+|||||+|||++|+++||+|+|++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~   81 (590)
T 3p9d_C            2 QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLEL   81 (590)
T ss_dssp             ----CCSCTTCCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHH
T ss_pred             CCCeEeecCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc---------------------------c------------------------cCCchhhHHHHHHHHhhhcC
Q psy17074        405 AKSQDAEI---------------------------Q------------------------KSDSGEYRGLLEKCAATALS  433 (632)
Q Consensus       405 a~~q~~~~---------------------------~------------------------~~~~~~~~~~L~~va~t~l~  433 (632)
                      |++||+++                           +                        +++. .+++.|.++|+|+|+
T Consensus        82 a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~~~e~L~~vA~tsls  160 (590)
T 3p9d_C           82 SRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDV-ENDAAMKKLIQASIG  160 (590)
T ss_dssp             TTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTT-CCTHHHHHHHTTTST
T ss_pred             HHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCHHHHHHHHHHHHh
Confidence            99999999                           0                        1111 135789999999999


Q ss_pred             CccccchhhHHHHHHHHHHHHhcc------------cCCCC-cEEEEEecCCCcccceeEEeEEEecccCCCCCcCCcee
Q psy17074        434 SKLIHQQKGFFSKMVVDAVMSLDD------------LLPLN-MIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKT  500 (632)
Q Consensus       434 sK~~~~~~~~l~~li~~A~~~v~~------------~~~~~-~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~  500 (632)
                      ||+.++|+++|++|+++|+..|+.            ++|++ +|+|++++||++.||++++||+|++++.|+   +||++
T Consensus       161 SK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~---~m~~~  237 (590)
T 3p9d_C          161 TKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP---KMSRH  237 (590)
T ss_dssp             TSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCT---TSCSC
T ss_pred             cccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCC---CCcce
Confidence            999999999999999999999973            23443 799999999999999999999999999988   48999


Q ss_pred             ecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEE
Q psy17074        501 YKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCA  580 (632)
Q Consensus       501 ~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v  580 (632)
                      ++||||++++|+|++++++++++|.++++++++++++.|++++++++++|++.|++|||++++|++++++||.++||++|
T Consensus       238 ~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av  317 (590)
T 3p9d_C          238 IENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVL  317 (590)
T ss_dssp             EESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCC
T ss_pred             eeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCchhHHHHHHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        581 GRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       581 ~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++.+|+|||++|||+++++++++++++||+ |++|++.++|+++|+||+|
T Consensus       318 ~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g  370 (590)
T 3p9d_C          318 RRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDN  370 (590)
T ss_dssp             CCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC
T ss_pred             ccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeC
Confidence            999999999999999999999999999999999 9999999999999999986

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2.3e-57  Score=503.98  Aligned_cols=294  Identities=25%  Similarity=0.396  Sum_probs=276.6

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc--
Q psy17074        335 TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI--  412 (632)
Q Consensus       335 ~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~--  412 (632)
                      .+..+|.+++.+|+.||++|+++|||||||+||||||++++|+++|||||+|||++|+++||+|+|++++|++||+++  
T Consensus         3 ~~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GD   82 (517)
T 3iyg_Z            3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGD   82 (517)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence            355688999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ------------------------ccC----------------------CchhhHHHHHHHHhhhcCCccccchhhHHHH
Q psy17074        413 ------------------------QKS----------------------DSGEYRGLLEKCAATALSSKLIHQQKGFFSK  446 (632)
Q Consensus       413 ------------------------~~~----------------------~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~  446 (632)
                                              +|.                      ....+++.|.++|+|+++||+.+.+.++|++
T Consensus        83 GTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~~~~~d~la~  162 (517)
T 3iyg_Z           83 GTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE  162 (517)
T ss_pred             CceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHHHHHHHHHhccccchhHHHHHHH
Confidence                                    110                      0111578899999999999999999999999


Q ss_pred             HHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCce
Q psy17074        447 MVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAE  523 (632)
Q Consensus       447 li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~  523 (632)
                      ++++|+..|.+   .+|+++|+|++++||+..||++++||+|+++|.||+   ||++++||||++++++|++++++++++
T Consensus       163 l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~---m~~~ien~kIll~~~~le~~k~e~~~~  239 (517)
T 3iyg_Z          163 AVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPD---MKKRVEDAYILTCNVSLEYEKTEVNSG  239 (517)
T ss_pred             HHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCC---ccccccCCeEEEeccccccccccccee
Confidence            99999999863   478899999999999999999999999999999996   899999999999999999999999999


Q ss_pred             EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------EEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHH
Q psy17074        524 IRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  594 (632)
Q Consensus       524 v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~---------vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~  594 (632)
                      +.++++++++++.++|++++++++++|+..+++         ||||+++|++++++||.++||++++++++++|+|||++
T Consensus       240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~  319 (517)
T 3iyg_Z          240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLA  319 (517)
T ss_pred             EEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence            999999999999999999999999999998877         48889999999999999999999999999999999999


Q ss_pred             cCCeEeecccCCCCCC-CeeeeEEEEEEEcCeEEEEecC
Q psy17074        595 CGGAVMTTAHDLNDSV-LGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       595 tGa~ii~~l~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||+++++++++++++ ||+|+ |++.++|+++|+||+|
T Consensus       320 tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g  357 (517)
T 3iyg_Z          320 CGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEK  357 (517)
T ss_pred             hCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeC
Confidence            9999999999999999 99999 9999999999999986

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=9.8e-58  Score=511.21  Aligned_cols=304  Identities=30%  Similarity=0.522  Sum_probs=279.9

Q ss_pred             chhhhcccC--ccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHH
Q psy17074        326 PQILLLKEG--TENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVD  403 (632)
Q Consensus       326 ~~~~~~~~~--~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~  403 (632)
                      +|..+++++  .++.+|.++|.+|+.||+.|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|+++
T Consensus        27 ~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e  106 (562)
T 3p9d_E           27 RPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQ  106 (562)
T ss_dssp             ---CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHH
T ss_pred             CCeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHH
Confidence            455666665  366789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccc--------------------------------------------------ccCCch-h--hHHHHHHHHhh
Q psy17074        404 IAKSQDAEI--------------------------------------------------QKSDSG-E--YRGLLEKCAAT  430 (632)
Q Consensus       404 ~a~~q~~~~--------------------------------------------------~~~~~~-~--~~~~L~~va~t  430 (632)
                      +|++||+++                                                  .+++.. .  .++.|.++|+|
T Consensus       107 ~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~t  186 (562)
T 3p9d_E          107 LSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKT  186 (562)
T ss_dssp             HHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHH
Confidence            999999999                                                  011111 1  13789999999


Q ss_pred             hcCCccccchhhHHHHHHHHHHHHhcc----cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceee-----
Q psy17074        431 ALSSKLIHQQKGFFSKMVVDAVMSLDD----LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTY-----  501 (632)
Q Consensus       431 ~l~sK~~~~~~~~l~~li~~A~~~v~~----~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~-----  501 (632)
                      +++||+++.+.++|++++++|+..|.+    ++|+++|+|++++||++.||++++||+|+++|.||+   ||+..     
T Consensus       187 Sl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~---m~~~~~~~~~  263 (562)
T 3p9d_E          187 SLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQ---MPKCVLPKEG  263 (562)
T ss_dssp             HHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTS---CCC-----TT
T ss_pred             hcCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCC---cCcccccccc
Confidence            999999999999999999999999864    578899999999999999999999999999999997   57777     


Q ss_pred             -cCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEE
Q psy17074        502 -KNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCA  580 (632)
Q Consensus       502 -~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v  580 (632)
                       +|++|++++|+|++.+++.++++.++++++++++.++|++++++++++|++.|+|||||+++|++++++||.++||+++
T Consensus       264 ~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v  343 (562)
T 3p9d_E          264 SDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAV  343 (562)
T ss_dssp             CSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCE
T ss_pred             cccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEE
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcC--eEEEEecC
Q psy17074        581 GRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERDTLNRE  632 (632)
Q Consensus       581 ~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~  632 (632)
                      +++++++|+|||++|||+++++++++++++||+|++|++.++|+  ++|+||+|
T Consensus       344 ~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g  397 (562)
T 3p9d_E          344 RWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ  397 (562)
T ss_dssp             ECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECC
T ss_pred             eccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEec
Confidence            99999999999999999999999999999999999999999995  89999975

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=8.8e-57  Score=499.60  Aligned_cols=294  Identities=23%  Similarity=0.371  Sum_probs=276.8

Q ss_pred             cCccccCC-chhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhcccc
Q psy17074        333 EGTENSQG-KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAE  411 (632)
Q Consensus       333 ~~~~~~~~-~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~  411 (632)
                      +|+++++| .+++.+|+.||+.|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++||++
T Consensus         1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~   80 (512)
T 3iyg_Q            1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE   80 (512)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence            47888999 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c--------------------------ccC-------------------------CchhhHHHHHHHHhhhcCCccccch
Q psy17074        412 I--------------------------QKS-------------------------DSGEYRGLLEKCAATALSSKLIHQQ  440 (632)
Q Consensus       412 ~--------------------------~~~-------------------------~~~~~~~~L~~va~t~l~sK~~~~~  440 (632)
                      +                          +|.                         ....+++.|.++|+|+++||+.+ +
T Consensus        81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~-~  159 (512)
T 3iyg_Q           81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG-N  159 (512)
T ss_pred             hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCcc-c
Confidence            9                          110                         01135788999999999999765 7


Q ss_pred             hhHHHHHHHHHHHHhcc---cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhh
Q psy17074        441 KGFFSKMVVDAVMSLDD---LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKA  517 (632)
Q Consensus       441 ~~~l~~li~~A~~~v~~---~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~  517 (632)
                      +++|++|+++|+.+|++   .+++++|+|.|..||++.||++++||+|+++|.+     ||+.++||+|++++||+++.+
T Consensus       160 ~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~-----~~~~~~n~kI~ll~~~le~~~  234 (512)
T 3iyg_Q          160 EVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG-----DVTSVKDAKIAVYSCPFDGMI  234 (512)
T ss_pred             hHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCcccceEEeeEEEecCcCC-----CCcccccCceEEEeccccccc
Confidence            89999999999999973   4788999999999999999999999999999864     689999999999999999999


Q ss_pred             ccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCC
Q psy17074        518 ERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  597 (632)
Q Consensus       518 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa  597 (632)
                      ++.++++.+++++++.++.++|++++++++++|++.|+|||||+++|++.+++||.++||++|+++++.+|+|||++|||
T Consensus       235 ~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa  314 (512)
T 3iyg_Q          235 TETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGA  314 (512)
T ss_pred             ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        598 AVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       598 ~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++++++++++++||+|++|+++++|+++|++|+|
T Consensus       315 ~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~  349 (512)
T 3iyg_Q          315 TALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKH  349 (512)
T ss_pred             EEecccccCCHHHCCcccEEEEEEeCCeEEEEEEc
Confidence            99999999999999999999999999999999975

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=1.4e-57  Score=509.33  Aligned_cols=301  Identities=24%  Similarity=0.369  Sum_probs=282.0

Q ss_pred             hhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074        329 LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ  408 (632)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q  408 (632)
                      .++++++++.+|.+++.+|+.||++|+++|||||||+||||||++++|+|+|||||+|||++|+++||+|+|++++|++|
T Consensus         4 ~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q   83 (546)
T 3p9d_F            4 QLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ   83 (546)
T ss_dssp             CSSCTTEEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence            35778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc--------------------------c------------------------cCCc-hhhHHHHHHHHhhhcCCccc
Q psy17074        409 DAEI--------------------------Q------------------------KSDS-GEYRGLLEKCAATALSSKLI  437 (632)
Q Consensus       409 ~~~~--------------------------~------------------------~~~~-~~~~~~L~~va~t~l~sK~~  437 (632)
                      |+++                          +                        +++. ..+++.|.++|+|+++||+.
T Consensus        84 d~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~  163 (546)
T 3p9d_F           84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVD  163 (546)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTH
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcc
Confidence            9999                          0                        1110 03578899999999999999


Q ss_pred             cchhhHHHHHHHHHHHHhc----ccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccc
Q psy17074        438 HQQKGFFSKMVVDAVMSLD----DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIEL  513 (632)
Q Consensus       438 ~~~~~~l~~li~~A~~~v~----~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~L  513 (632)
                      +.+.++|++++++|+..|.    .++|+++|+|++++||+..||++++||+|++++.||+   ||++++||||++++|+|
T Consensus       164 ~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~---m~~~~en~kIll~~~~L  240 (546)
T 3p9d_F          164 ADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD---MPTRVKNAYVLILNVSL  240 (546)
T ss_dssp             HHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSS---SCSSBCSCCCCEECCCS
T ss_pred             hhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEeccccccc---CcceecCceEEEecCcc
Confidence            9999999999999999986    2588899999999999999999999999999999984   89999999999999999


Q ss_pred             hhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC---------C-cEEEEeCCccHHHHHHHHHCCcEEEecC
Q psy17074        514 ELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG---------A-QVVLSKLPIGDVATQYFADRDMFCAGRV  583 (632)
Q Consensus       514 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g---------v-~vvi~~~~I~~~al~~L~~~~I~~v~~v  583 (632)
                      +++++++++++.++++++++++.++|+++++++++.|+..+         + .|||++++|++++++||.++||++++++
T Consensus       241 e~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v  320 (546)
T 3p9d_F          241 EYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRA  320 (546)
T ss_dssp             SSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCC
T ss_pred             cccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecC
Confidence            99999999999999999999999999999999999998754         3 3899999999999999999999999999


Q ss_pred             CchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        584 PEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       584 ~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++.+|+|||++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       321 ~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g  369 (546)
T 3p9d_F          321 KRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTE  369 (546)
T ss_dssp             CHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSS
T ss_pred             CHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEec
Confidence            9999999999999999999999999999999999999999999999986

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=2.5e-57  Score=505.68  Aligned_cols=300  Identities=31%  Similarity=0.452  Sum_probs=283.3

Q ss_pred             hhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEc-CCCCeEEccChHHHHhhccccChHhHHHHHHHHh
Q psy17074        329 LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVD-QNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKS  407 (632)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~-~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~  407 (632)
                      .+|+++++..+|.++|.+|+.||..|+++|||||||+||||||++ ++|+|+|||||+|||++|+++||+|+|++++|++
T Consensus         4 ~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~   83 (527)
T 3p9d_B            4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV   83 (527)
T ss_dssp             CSSCSCEEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred             ehhcCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999 8999999999999999999999999999999999


Q ss_pred             ccccc-----------------------c-cCC-------------------------ch----hhHHHHHHHHhhhcCC
Q psy17074        408 QDAEI-----------------------Q-KSD-------------------------SG----EYRGLLEKCAATALSS  434 (632)
Q Consensus       408 q~~~~-----------------------~-~~~-------------------------~~----~~~~~L~~va~t~l~s  434 (632)
                      ||+++                       . ..+                         ..    .+++.|.++|+|+++|
T Consensus        84 qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~s  163 (527)
T 3p9d_B           84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSS  163 (527)
T ss_dssp             HHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             hHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhcccc
Confidence            99999                       1 111                         01    1278999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccch
Q psy17074        435 KLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELE  514 (632)
Q Consensus       435 K~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le  514 (632)
                      |+.+.|+++|++|+++|+.+|+++.|+++|+|+++.||++.||++++||+||++|.||+    |++++||||++++|+|+
T Consensus       164 K~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~----p~~~~n~kIlll~~~le  239 (527)
T 3p9d_B          164 KILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ----PKRIENAKILIANTTLD  239 (527)
T ss_dssp             SGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC----CSCCSSCEEEEECSCSS
T ss_pred             CcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCC----CeeeecceEEEeccccc
Confidence            99999999999999999999987667789999999999999999999999999999984    78899999999999999


Q ss_pred             hhhcc-CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHH
Q psy17074        515 LKAER-DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMK  593 (632)
Q Consensus       515 ~~~~~-~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~  593 (632)
                      +++++ +++++.+++++++.++.++|++++++++++|++.|++|||++++|++++++||.++||++|+++++.+|+|||+
T Consensus       240 ~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia~  319 (527)
T 3p9d_B          240 TDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLAL  319 (527)
T ss_dssp             CCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHHH
T ss_pred             cccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHHH
Confidence            99999 69999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        594 ACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       594 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||+++++++++++++||+|+.|++..+|+++|++|+|
T Consensus       320 ~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g  358 (527)
T 3p9d_B          320 VTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSG  358 (527)
T ss_dssp             HTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCS
T ss_pred             HhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEEC
Confidence            999999999999999999999999999999999999986

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=7.5e-55  Score=484.02  Aligned_cols=270  Identities=24%  Similarity=0.450  Sum_probs=255.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +++.++++++.+++++++..++++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||++
T Consensus       235 ~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~  314 (515)
T 3iyg_G          235 YKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARA  314 (515)
T ss_pred             ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHH
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCe
Q psy17074        113 CGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA  191 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~  191 (632)
                      |||+++++++++++++||+ |+.|++.++++++|++|+||+++.+|||+|||+|+++++|+||+++|||+++|+++++++
T Consensus       315 tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~  394 (515)
T 3iyg_G          315 CGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQ  394 (515)
T ss_pred             hCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCccc
Q psy17074        192 VVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIR  266 (632)
Q Consensus       192 vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G  266 (632)
                      +|||||++|++++.+|++++ ...++      +++++++| ++|||.||++|+ |||+|+.+++.+|++.|.   +..+|
T Consensus       395 ivpGGGa~e~~~~~~L~~~~~~~~g~------eq~~i~~~-a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G  467 (515)
T 3iyg_G          395 LVPGGGASEMAVAHALTEKSKAMTGV------EQWPYRAV-AQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWG  467 (515)
T ss_pred             EEeCCCHHHHHHHHHHHHHhhccCcH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcee
Confidence            99999999999999999987 44555      45577888 999999999998 999999999999998774   23489


Q ss_pred             cccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        267 LDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       267 ~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      ||+  .+|+|.||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       468 ~d~--~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  513 (515)
T 3iyg_G          468 VNG--ETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG  513 (515)
T ss_pred             eeC--CCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence            999  99999999999999999   99999999999999999999874

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.1e-54  Score=484.06  Aligned_cols=269  Identities=28%  Similarity=0.414  Sum_probs=252.3

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      +..++++++.++++++++.+.++|++++++++++|++.|+||||++++|+++|++||.++||++++++++++|+|||++|
T Consensus       238 ~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~t  317 (529)
T 3iyg_A          238 TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKAS  317 (529)
T ss_pred             ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHh
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCC------CCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHH
Q psy17074        114 GGAVMTTAHDLN------DSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTI  187 (632)
Q Consensus       114 Ga~ii~~l~~l~------~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~  187 (632)
                      ||++++++++++      +++||+|+.|+++++++++|++|+||+++++|||+|||+|+++++|+||+++||||++|+++
T Consensus       318 Ga~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v  397 (529)
T 3iyg_A          318 GATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVL  397 (529)
T ss_pred             CCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987654      67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC---
Q psy17074        188 RNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN---  262 (632)
Q Consensus       188 ~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~---  262 (632)
                      +||++||||||+|+++|.+|++++. ..++      +++++++| ++||++||++|| |||+|+.+++.+|++.|..   
T Consensus       398 ~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~------eq~~i~~f-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~  470 (529)
T 3iyg_A          398 ESKSVVPGGGAVEAALSIYLENYATSMGSR------EQLAIAEF-ARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQV  470 (529)
T ss_pred             hCCeEEeCCcHHHHHHHHHHHHHhhhcCCh------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999983 3455      45677898 999999999998 9999999999999987742   


Q ss_pred             -------CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        263 -------AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       263 -------~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                             ..+|||.  .+|++.||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       471 ~~~~~~~~~~G~d~--~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  527 (529)
T 3iyg_A          471 NPERKNLKWIGLDL--VNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL  527 (529)
T ss_pred             ccccccCceeeeeC--CCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence                   2479999  99999999999999999   99999999999999999999864

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=9.4e-55  Score=482.84  Aligned_cols=270  Identities=52%  Similarity=0.826  Sum_probs=255.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +++.++++++.++++++++.++++|++++++++++|++.|+||||++++|++.+++||.++||++++++++.+|+|||++
T Consensus       237 ~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~  316 (515)
T 3iyg_H          237 LKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMA  316 (515)
T ss_pred             ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHH
Confidence            44456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|+.|++..+++++|++|++|.++.+|||+|||+|+++++|+||+++||||++|++++|+++
T Consensus       317 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~i  396 (515)
T 3iyg_H          317 CGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSV  396 (515)
T ss_pred             hCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCC--ccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNA--EIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d  268 (632)
                      |||||++|++++.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|...  .+|||
T Consensus       397 VpGGGa~e~~~s~~L~~~~~~~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d  469 (515)
T 3iyg_H          397 VAGGGAIEMELSKYLRDYSRTIPGK------QQLLIGAY-AKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVD  469 (515)
T ss_pred             ecCCcHHHHHHHHHHHHHHhcCChH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEe
Confidence            9999999999999999987 34555      45577888 999999999998 99999999999999887532  37999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      +  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       470 ~--~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  513 (515)
T 3iyg_H          470 I--NTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKN  513 (515)
T ss_pred             C--CCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9  99999999999999999   99999999999999999999864

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=7.7e-55  Score=486.41  Aligned_cols=275  Identities=28%  Similarity=0.437  Sum_probs=257.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +.+.++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++
T Consensus       241 ~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~~  320 (543)
T 3ruv_A          241 IKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA  320 (543)
T ss_dssp             CCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred             ccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHHH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|++|+++.+++++|++|++|.++..|||+|||+|+++++|+||+++||||++|++++||++
T Consensus       321 tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~i  400 (543)
T 3ruv_A          321 TGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRI  400 (543)
T ss_dssp             HCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred             hCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRL  267 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~  267 (632)
                      |||||++|++++.+|++++ ...+++      ++++++| ++||+.||++|+ |||+|+.+++.+|++.|.   +..+||
T Consensus       401 VpGGGa~e~~~s~~L~~~~~~~~g~e------q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~  473 (543)
T 3ruv_A          401 VSGGGSTEVELSMKLREYAEGISGRE------QLAVRAF-ADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGL  473 (543)
T ss_dssp             EETTTHHHHHHHHHHHHHHHTCCTTH------HHHHHHH-HHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEE
T ss_pred             ecCCcHHHHHHHHHHHHHhhcCChHH------HHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeee
Confidence            9999999999999999988 445554      5577888 999999999998 999999999999998774   234899


Q ss_pred             ccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074        268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR  316 (632)
Q Consensus       268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k  316 (632)
                      |+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|.+..+..
T Consensus       474 d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~  523 (543)
T 3ruv_A          474 NV--FTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRG  523 (543)
T ss_dssp             CT--TTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC----
T ss_pred             eC--CCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCC
Confidence            99  99999999999999999   9999999999999999999998875443

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.5e-54  Score=481.91  Aligned_cols=268  Identities=24%  Similarity=0.393  Sum_probs=252.5

Q ss_pred             cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074         35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  114 (632)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG  114 (632)
                      ..++++++.++++++++.++++|+++++++++++++.|+||||++++|+++|++||.++||++++++++.+|+|||++||
T Consensus       237 k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tG  316 (515)
T 3iyg_E          237 KPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATG  316 (515)
T ss_pred             cccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhC
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        115 GAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       115 a~ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |+++++++++++++||+|++|+++.+|+  ++|++|+||.++.+|||+|||+|+++++|+||+++||||++|+++++|++
T Consensus       317 a~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i  396 (515)
T 3iyg_E          317 GRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRV  396 (515)
T ss_pred             CEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999987  89999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCcccc
Q psy17074        193 VAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIRL  267 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G~  267 (632)
                      |||||++|++++.+|++++. .+++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.   +..+||
T Consensus       397 VpGGGa~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~  469 (515)
T 3iyg_E          397 VYGGGAAEISCALAVSQEADKCPTL------EQYAMRAF-ADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGI  469 (515)
T ss_pred             CCCCcHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeE
Confidence            99999999999999999874 3555      45577888 999999999998 999999999999998764   234899


Q ss_pred             ccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      |+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       470 d~--~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          470 DC--LHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             ec--CCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            99  99999999999999999   99999999999999999999863

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=2.6e-54  Score=479.53  Aligned_cols=266  Identities=22%  Similarity=0.348  Sum_probs=252.9

Q ss_pred             ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074         38 KEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV  117 (632)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~i  117 (632)
                      +++++.+++++++..++++|++++.+++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++|||++
T Consensus       239 ~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~i  318 (513)
T 3iyg_B          239 FGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEI  318 (513)
T ss_pred             cCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC
Q psy17074        118 MTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGG  197 (632)
Q Consensus       118 i~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGG  197 (632)
                      +++++++++++||+|++|+++.+++++|++|+||.++++|||+|||+|+++++|+||+++||||++|++++|+++|||||
T Consensus       319 i~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGG  398 (513)
T 3iyg_B          319 ASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGG  398 (513)
T ss_pred             ecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             hhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Ccccccccccc
Q psy17074        198 AIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLDSVEEY  273 (632)
Q Consensus       198 a~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d~~~~~  273 (632)
                      ++|++++.+|++++ +..++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|..  ..+|||+  .+
T Consensus       399 a~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~--~~  469 (513)
T 3iyg_B          399 CSEMLMAHAVTQLASRTPGK------EAVAMESY-AKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDM--KE  469 (513)
T ss_pred             HHHHHHHHHHHHHhhccCcH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecC--CC
Confidence            99999999999987 34555      45577888 999999999998 9999999999999987743  2489999  99


Q ss_pred             chhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        274 QKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       274 ~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      |+|.||.+.|||||+   +++|++|+++|+++||+|++|...
T Consensus       470 g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~  511 (513)
T 3iyg_B          470 GTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAA  511 (513)
T ss_pred             CCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999   999999999999999999999763

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=5.6e-54  Score=477.30  Aligned_cols=267  Identities=22%  Similarity=0.397  Sum_probs=251.9

Q ss_pred             ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE-----ecCcChhHHHHHHHCCceEEEeCCchhHHHHH
Q psy17074         36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLS-----KLPIGDVATQYFADRDMFCAGRVPEEDLKRTM  110 (632)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~-----~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia  110 (632)
                      .++++++.++++++++.++++|++++.+++++|++.|+||||+     +++|+++|++||.++||++++++++.+|+|||
T Consensus       237 ~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia  316 (518)
T 3iyg_D          237 TDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFIC  316 (518)
T ss_pred             cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHH
Confidence            3467789999999999999999999999999999999999999     89999999999999999999999999999999


Q ss_pred             HHhCCEEeccccCCCCCCCCCcceEEEEEEcc-eEEEEEeccCC-CceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHh
Q psy17074        111 KACGGAVMTTAHDLNDSVLGTCAVFDERQIGS-ERFNVFSGCKN-ARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIR  188 (632)
Q Consensus       111 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~-~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~  188 (632)
                      ++|||+++++++++++++||+|+.|+++++++ ++|++|++|++ +++|||+|||+|+++++|+||+++||||++|++++
T Consensus       317 ~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~  396 (518)
T 3iyg_D          317 KTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVK  396 (518)
T ss_pred             HHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999 79999999988 89999999999999999999999999999999999


Q ss_pred             CCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cc
Q psy17074        189 NHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AE  264 (632)
Q Consensus       189 ~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~  264 (632)
                      +|++|||||++|++++.+|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|..  ..
T Consensus       397 ~~~iVpGGGa~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~  469 (518)
T 3iyg_D          397 KRALIAGGGAPEIELALRLTEYSRTLSGM------ESYCIRAF-ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT  469 (518)
T ss_pred             CCCEeecCcHHHHHHHHHHHHHhhcCChH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCc
Confidence            999999999999999999999873 4555      45577888 999999999998 9999999999999987643  34


Q ss_pred             cccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        265 IRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       265 ~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      +|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|+||..
T Consensus       470 ~G~d~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  517 (518)
T 3iyg_D          470 TGINV--RKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT  517 (518)
T ss_pred             eeEeC--CCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEec
Confidence            89999  99999999999999999   99999999999999999999864

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=4.3e-55  Score=484.31  Aligned_cols=275  Identities=25%  Similarity=0.436  Sum_probs=228.1

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++++|+|||++
T Consensus       199 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~  278 (500)
T 3aq1_B          199 FRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKV  278 (500)
T ss_dssp             C-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred             ccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|++|+++++++++|++|+||.++++|||+|||+|+.+++|+||+++|||+++|+++++|++
T Consensus       279 tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~i  358 (500)
T 3aq1_B          279 TGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKV  358 (500)
T ss_dssp             HCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred             hCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCCCceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d  268 (632)
                      |||||++|++++.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+  ..+|||
T Consensus       359 VpGGGa~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d  431 (500)
T 3aq1_B          359 VVGGGSSEVELSLRLSEYASTLKGR------EQLAVSKF-AEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLN  431 (500)
T ss_dssp             EETTTHHHHHHHHHHHHHHHTCCSH------HHHHHHHH-HHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEEC
T ss_pred             CCCCcHHHHHHHHHHHHHhhhcCch------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEe
Confidence            9999999999999999998 44555      45577888 999999999998 9999999999999987643  248999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR  316 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k  316 (632)
                      +  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|....+.+
T Consensus       432 ~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~  480 (500)
T 3aq1_B          432 V--YTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSAN  480 (500)
T ss_dssp             T--TTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             C--CCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence            9  99999999999999999   9999999999999999999999875443

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=8.4e-55  Score=487.22  Aligned_cols=271  Identities=25%  Similarity=0.398  Sum_probs=255.3

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++
T Consensus       253 ~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~  332 (559)
T 3p9d_A          253 KARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARA  332 (559)
T ss_dssp             CCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHHHHHHHHH
T ss_pred             ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHHHHHHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccc------cCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHH
Q psy17074        113 CGGAVMTTA------HDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRT  186 (632)
Q Consensus       113 tGa~ii~~l------~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a  186 (632)
                      |||++++++      +++++++||+|++|+++.+++++|++|+||.++++|||+|||+|+++++|+||+++||||++|++
T Consensus       333 TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~a  412 (559)
T 3p9d_A          333 TGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRT  412 (559)
T ss_dssp             SSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSSCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998      78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--C
Q psy17074        187 IRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--N  262 (632)
Q Consensus       187 ~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~  262 (632)
                      +++|++|||||++|++++.+|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.  +
T Consensus       413 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~  485 (559)
T 3p9d_A          413 LESGNVVPGGGCVEAALNIYLDNFATTVGSR------EQLAIAEF-AAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQ  485 (559)
T ss_dssp             HTSSCEECTTTTHHHHHHHHHHHHHTTSCTT------HHHHHHHH-HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTS
T ss_pred             hhcCCEEeCccHHHHHHHHHHHHHhcccChH------HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999999973 4555      45577888 999999999998 999999999999998763  1


Q ss_pred             C------------ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        263 A------------EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       263 ~------------~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      .            .+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|...
T Consensus       486 ~~~~~~~~~~~~~~~G~d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  548 (559)
T 3p9d_A          486 MAKPEDVKRRSYRNYGLDL--IRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVD  548 (559)
T ss_dssp             CCC----CCCCCCCEEECT--TSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECC
T ss_pred             cccccccccccccceeEEC--CCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcC
Confidence            1            479999  99999999999999999   999999999999999999999875

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=6.2e-54  Score=476.48  Aligned_cols=268  Identities=22%  Similarity=0.383  Sum_probs=252.2

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------EEEEecCcChhHHHHHHHCCceEEEeCCc
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQ---------VVLSKLPIGDVATQYFADRDMFCAGRVPE  103 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~---------lvi~~~~I~~~al~~l~~~~I~~~~~v~~  103 (632)
                      +++.++++++.++++++++.++++|++++...+++|+..+++         |||++++|+++|++||.++||++++++++
T Consensus       231 ~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~  310 (517)
T 3iyg_Z          231 YEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKR  310 (517)
T ss_pred             ccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCH
Confidence            445567889999999999999999999999999999999887         48899999999999999999999999999


Q ss_pred             hhHHHHHHHhCCEEeccccCCCCCC-CCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHH
Q psy17074        104 EDLKRTMKACGGAVMTTAHDLNDSV-LGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMI  182 (632)
Q Consensus       104 ~~l~~ia~~tGa~ii~~l~~l~~~~-lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~  182 (632)
                      .+|+|||++|||+++++++++++++ ||+|+ |++.++++++|++|++|.++..|||+|||+|+++++|+||+++||||+
T Consensus       311 ~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~  389 (517)
T 3iyg_Z          311 RNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRA  389 (517)
T ss_pred             HHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 99999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhcc
Q psy17074        183 VRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAER  260 (632)
Q Consensus       183 ~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~  260 (632)
                      +|++++||++|||||++|+++|.+|++++. .+++      +++++++| ++||+++|++|| |||+|+.+++.+|++.|
T Consensus       390 ~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~------eq~~i~~~-a~ALe~iP~~La~NaG~d~~~~v~~l~~~h  462 (517)
T 3iyg_Z          390 VKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGR------AQLGVQAF-ADALLIIPKVLAQNSGFDLQETLVKVQAEH  462 (517)
T ss_pred             HHHHHhcceEecCccHHHHHHHHHHHHHhccCCHH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999984 4555      45577888 999999999998 99999999999999887


Q ss_pred             C--CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        261 D--NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       261 ~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      .  +..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++|++|++|.
T Consensus       463 ~~~~~~~G~d~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~  515 (517)
T 3iyg_Z          463 SESGQLVGVDL--NTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR  515 (517)
T ss_pred             hcCCCcEEEeC--CCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4  33489999  99999999999999999   9999999999999999999985

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=2.7e-54  Score=483.93  Aligned_cols=276  Identities=19%  Similarity=0.290  Sum_probs=246.9

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +.+.++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++
T Consensus       256 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~~  335 (568)
T 3p9d_H          256 IANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRV  335 (568)
T ss_dssp             SCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHHH
T ss_pred             ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHHH
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC--CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHh--
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK--NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIR--  188 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~--~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~--  188 (632)
                      |||+++++++++++++||+|+.|+++.+++++|++|++|.  ++++|||+|||+|+++++|+||+++||||++|++++  
T Consensus       336 tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~  415 (568)
T 3p9d_H          336 CGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPS  415 (568)
T ss_dssp             HSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999998  789999999999999999999999999999999999  


Q ss_pred             CCeEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC----
Q psy17074        189 NHAVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN----  262 (632)
Q Consensus       189 ~~~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~----  262 (632)
                      |+++|||||++|++++.+|++++ ...++      +++++++| ++||++||++|| |||+|+.+++.+|++.|..    
T Consensus       416 d~~iVpGGGa~E~~ls~~L~~~a~~~~g~------eq~~i~~f-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~  488 (568)
T 3p9d_H          416 GGKLLPGAGATEIELISRITKYGERTPGL------LQLAIKQF-AVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPG  488 (568)
T ss_dssp             CCCCCCTTTHHHHHHHHHHHHHHHTCCST------HHHHHHHH-HHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCC
T ss_pred             CCeEEeCCcHHHHHHHHHHHHHhccCCcH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhccc
Confidence            88999999999999999999997 44555      45577898 999999999998 9999999999999998743    


Q ss_pred             ------Cccccccccccch---hHhHHHHhHHHHH---HHHHHhhchhheecccccccccccccccc
Q psy17074        263 ------AEIRLDSVEEYQK---VVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADRV  317 (632)
Q Consensus       263 ------~~~G~d~~~~~~~---~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k~  317 (632)
                            ..+|||+  .+|+   |+||.+.|||||+   +++|++|+++|+++||||++|....+..+
T Consensus       489 ~~~~~~~~~G~d~--~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~  553 (568)
T 3p9d_H          489 AVKTDHLYKGVDI--DGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGP  553 (568)
T ss_dssp             CCCCTTSSSCCCH--HHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC---------------
T ss_pred             ccccCCCceeEcc--cCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCC
Confidence                  2479999  9998   9999999999999   99999999999999999999988755544

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=1.6e-54  Score=484.20  Aligned_cols=275  Identities=27%  Similarity=0.460  Sum_probs=255.6

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..+.++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++++|+|||++
T Consensus       246 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~  325 (543)
T 1a6d_B          246 IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKA  325 (543)
T ss_dssp             CCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred             cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|+.|+++.+++++|++|+||.++++|||+|||+|+.+++|+||+++|||+++|+++++|++
T Consensus       326 tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~i  405 (543)
T 1a6d_B          326 TGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAY  405 (543)
T ss_dssp             HTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred             hCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d  268 (632)
                      |||||++|++++.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+  ..+|||
T Consensus       406 vpGGGa~e~~~s~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d  478 (543)
T 1a6d_B          406 AAGGGATAAEIAFRLRSYAQKIGGR------QQLAIEKF-ADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGIN  478 (543)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHTCSS------HHHHHHHH-HHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             cCCccHHHHHHHHHHHHHhhhcCCh------HHHHHHHH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEe
Confidence            9999999999999999998 34555      45577888 999999999998 9999999999999987642  348999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR  316 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k  316 (632)
                      +  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|....+.+
T Consensus       479 ~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~  527 (543)
T 1a6d_B          479 V--FTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSS  527 (543)
T ss_dssp             T--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC------
T ss_pred             C--CCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence            9  99999999999999999   9999999999999999999999875433

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=2.8e-54  Score=482.08  Aligned_cols=273  Identities=32%  Similarity=0.512  Sum_probs=254.9

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..+.++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++++|+|||++
T Consensus       245 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~  324 (545)
T 1a6d_A          245 IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKA  324 (545)
T ss_dssp             CCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHH
T ss_pred             cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|++|+++++++++|++|++|.++++|||+|||+|+.+++|+||+++|||+++|+++++|++
T Consensus       325 tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~i  404 (545)
T 1a6d_A          325 TGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKF  404 (545)
T ss_dssp             HCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred             hCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d  268 (632)
                      |||||++|++++.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+  ..+|||
T Consensus       405 VpGGGa~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d  477 (545)
T 1a6d_A          405 LWGGGAVEAELAMRLAKYANSVGGR------EQLAIEAF-AKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVD  477 (545)
T ss_dssp             EETTTHHHHHHHHHHHHHHHTSCHH------HHHHHHHH-HHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             EeCcCHHHHHHHHHHHHHhhccCcc------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCccee
Confidence            9999999999999999998 34555      45577888 999999999998 9999999999999987642  348999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA  314 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~  314 (632)
                      +  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|....+
T Consensus       478 ~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~  524 (545)
T 1a6d_A          478 L--DNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKS  524 (545)
T ss_dssp             T--TTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC-----
T ss_pred             c--ccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9  99999999999999999   99999999999999999999998743

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=4.9e-55  Score=488.07  Aligned_cols=276  Identities=28%  Similarity=0.457  Sum_probs=256.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +.+.++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++
T Consensus       255 ~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~  334 (553)
T 3ko1_A          255 VEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARA  334 (553)
T ss_dssp             CCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTT
T ss_pred             ccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHHHHHHh
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|+.|+++.+++++|++|+||.++..|||+|||+|+++++|+||+++||||++|+++++|++
T Consensus       335 tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~i  414 (553)
T 3ko1_A          335 TGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRA  414 (553)
T ss_dssp             TTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred             hCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCC---cccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNA---EIRL  267 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~---~~G~  267 (632)
                      |||||++|++++.+|++++ ...+++      ++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+.   .+||
T Consensus       415 VpGGGa~e~~~s~~L~~~~~~~~g~e------q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~  487 (553)
T 3ko1_A          415 IAGGGAVEIEIAKKLRKYAPQVGGKE------QLAVEAY-ANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGI  487 (553)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHCSHH------HHHHHHH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEE
T ss_pred             ecCCceeEeHHHHHHHHhccccCChh------HhHHHHH-HHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeE
Confidence            9999999999999999987 345664      5577888 999999999998 99999999999999887543   3799


Q ss_pred             ccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccccccc
Q psy17074        268 DSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADRV  317 (632)
Q Consensus       268 d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k~  317 (632)
                      |+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|....+.++
T Consensus       488 d~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~  538 (553)
T 3ko1_A          488 DL--YAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGG  538 (553)
T ss_dssp             ET--TTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC------
T ss_pred             Ee--ecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccC
Confidence            99  99999999999999999   99999999999999999999998765555

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=2.6e-54  Score=482.57  Aligned_cols=273  Identities=30%  Similarity=0.482  Sum_probs=257.3

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++++|+|||++
T Consensus       248 ~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~  327 (548)
T 1q3q_A          248 VKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA  327 (548)
T ss_dssp             CCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred             cccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|++|+++.+++++|++|++|.++++|||+|||+|+.+++|+||+++|||+++|+++++|++
T Consensus       328 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~i  407 (548)
T 1q3q_A          328 TGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAV  407 (548)
T ss_dssp             HCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred             hCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC--Cccccc
Q psy17074        193 VAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN--AEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~--~~~G~d  268 (632)
                      |||||++|++++.+|++++. ..++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.+  ..+|||
T Consensus       408 vpGGGa~e~~~~~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d  480 (548)
T 1q3q_A          408 LPAGGAPEIELAIRLDEYAKQVGGK------EALAIENF-ADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGID  480 (548)
T ss_dssp             EECTTHHHHHHHHHHHHHHHHHCHH------HHHHHHHH-HHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             ccCCcHHHHHHHHHHHHHhhhcCCc------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCccee
Confidence            99999999999999999873 3455      45577888 999999999998 9999999999999977632  348999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA  314 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~  314 (632)
                      +  .+|+|.||.+.|||||+   +++|++|+++|+++||+|++|.....
T Consensus       481 ~--~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~  527 (548)
T 1q3q_A          481 V--FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKAT  527 (548)
T ss_dssp             T--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC-
T ss_pred             C--CCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9  99999999999999999   99999999999999999999988643

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2.2e-53  Score=472.27  Aligned_cols=270  Identities=19%  Similarity=0.299  Sum_probs=253.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +...|+++++.+++++++..++++|+++++.++++|++.|+||||++++|++.+++||.++||++++++++.+|+|||++
T Consensus       232 ~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~  311 (512)
T 3iyg_Q          232 GMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKT  311 (512)
T ss_pred             cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHH
Confidence            44556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCe
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK-NARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA  191 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~-~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~  191 (632)
                      |||+++++++++++++||+|++|++.++|++++++|++|+ ++++|||+|||+|+++++|+||+++||||++|+++++|+
T Consensus       312 tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~  391 (512)
T 3iyg_Q          312 VGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKR  391 (512)
T ss_pred             hCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999996 588999999999999999999999999999999999999


Q ss_pred             EEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcccc
Q psy17074        192 VVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRL  267 (632)
Q Consensus       192 vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~  267 (632)
                      +|||||++|++++.+|++++ ...+++      ++++++| ++||+.||++|+ |||+|+.+++.+|++.|.  +..+||
T Consensus       392 iVpGGGa~e~~~s~~L~~~~~~~~g~e------q~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~  464 (512)
T 3iyg_Q          392 LVPGGGATEIELAKQITSYGETCPGLE------QYAIKKF-AEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGL  464 (512)
T ss_pred             EecCCcHHHHHHHHHHHHHhccCCcHH------HHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEE
Confidence            99999999999999999987 345554      5577888 999999999998 999999999999998764  334899


Q ss_pred             ccccccc--hhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        268 DSVEEYQ--KVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       268 d~~~~~~--~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      |+  .+|  +|+||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       465 d~--~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~  511 (512)
T 3iyg_Q          465 DI--EAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA  511 (512)
T ss_pred             ec--CCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheec
Confidence            99  855  99999999999999   99999999999999999999863

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=3.1e-54  Score=482.88  Aligned_cols=269  Identities=24%  Similarity=0.364  Sum_probs=253.3

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      ...++++++.++++++++.++++|++++++++++|++.|+||||++++|+++|++||.++||++++++++.+|+|||++|
T Consensus       279 ~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~T  358 (562)
T 3p9d_E          279 PKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAIST  358 (562)
T ss_dssp             CCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHH
T ss_pred             cccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHh
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCCCCCCCCcceEEEEEEcc--eEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCe
Q psy17074        114 GGAVMTTAHDLNDSVLGTCAVFDERQIGS--ERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHA  191 (632)
Q Consensus       114 Ga~ii~~l~~l~~~~lG~~~~v~~~~i~~--~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~  191 (632)
                      ||+++++++++++++||+|+.|+++.+|+  ++|++|+||.++++|||+|||+|+++++|+||+++||||++|++++||+
T Consensus       359 Ga~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~  438 (562)
T 3p9d_E          359 NGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSR  438 (562)
T ss_dssp             CCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999984  8999999999999999999999999999999999999999999999999


Q ss_pred             EEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC---CCccc
Q psy17074        192 VVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD---NAEIR  266 (632)
Q Consensus       192 vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~---~~~~G  266 (632)
                      +|||||++|++++.+|++++ ...++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.   +..+|
T Consensus       439 iVpGGGa~e~~~s~~L~~~~~~~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G  511 (562)
T 3p9d_E          439 VVYGGGAAEVTMSLAVSEEADKQRGI------DQYAFRGF-AQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIG  511 (562)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHTTCTT------HHHHHHHH-HHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBC
T ss_pred             cCCCCcHHHHHHHHHHHHHhccCccH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCcee
Confidence            99999999999999999987 34555      45577888 999999999998 999999999999998663   34589


Q ss_pred             cccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        267 LDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       267 ~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                      ||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       512 ~d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  557 (562)
T 3p9d_E          512 VDC--LGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIIS  557 (562)
T ss_dssp             CBT--TTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred             Eec--CCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999  99999999999999999   99999999999999999999875

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=4.4e-54  Score=481.62  Aligned_cols=269  Identities=25%  Similarity=0.428  Sum_probs=249.0

Q ss_pred             cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhC
Q psy17074         35 KKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACG  114 (632)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tG  114 (632)
                      +.++++++.++++++++.++++|++++++++++|++.|++|||++++|+++|++||.++||++|+++++.+|+|||++||
T Consensus       254 K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~~~~k~~le~ia~~TG  333 (590)
T 3p9d_C          254 KGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTG  333 (590)
T ss_dssp             CCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHT
T ss_pred             ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeeccCCHHHHHHHHHHhC
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCce-------------------------------------
Q psy17074        115 GAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNART-------------------------------------  156 (632)
Q Consensus       115 a~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~-------------------------------------  156 (632)
                      |+++++++++++++||+ |++|++..+++++|++|+||.++..                                     
T Consensus       334 a~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~  413 (590)
T 3p9d_C          334 ATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSS  413 (590)
T ss_dssp             CCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC-------------------------------------------
T ss_pred             CceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999987666                                     


Q ss_pred             -------------------EEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhc-cCCCc
Q psy17074        157 -------------------CTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS-GLGDK  216 (632)
Q Consensus       157 -------------------~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~-~~~~~  216 (632)
                                         |||+|||+|+.+++|.||+++||||++|+++++|++|||||++|+++|.+|++++ ..+++
T Consensus       414 ~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~  493 (590)
T 3p9d_C          414 GALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGI  493 (590)
T ss_dssp             --------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCST
T ss_pred             HhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChH
Confidence                               9999999999999999999999999999999998899999999999999999987 44555


Q ss_pred             cccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccccccccchhHhHHHHhHHHHH---HH
Q psy17074        217 VRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDSVEEYQKVVDAEWKILYEKL---DK  290 (632)
Q Consensus       217 ~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~  290 (632)
                            +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.  +..+|||+  .+|+|+||.+.|||||+   ++
T Consensus       494 ------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~--~~g~~~dm~~~gI~dp~~vk~~  564 (590)
T 3p9d_C          494 ------QQWPYQAV-ADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDG--DKGKIVDMVSYGIWEPEVIKQQ  564 (590)
T ss_dssp             ------THHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCT--TSSSCBCTTTTTCCEEHHHHHH
T ss_pred             ------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeC--CCCeEeehHHcCCeEcHHHHHH
Confidence                  45677888 999999999998 999999999999998774  33489999  99999999999999999   99


Q ss_pred             HHHhhchhheeccccccccccc
Q psy17074        291 IHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       291 ~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +|++|+++|+++||||++|...
T Consensus       565 al~~A~e~a~~iL~id~ii~~~  586 (590)
T 3p9d_C          565 SVKTAIESACLLLRVDDIVSGV  586 (590)
T ss_dssp             HHHHHHHHHHHTTSEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999866

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=7.4e-54  Score=478.72  Aligned_cols=272  Identities=43%  Similarity=0.723  Sum_probs=256.5

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      +.+.++++++.+++++++..++++|++++.+++++|++.|++|||++++|++.+++||.++||++++++++.+|+|||++
T Consensus       250 ~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~  329 (550)
T 3p9d_G          250 LKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQA  329 (550)
T ss_dssp             CCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHH
T ss_pred             cccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeE
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAV  192 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~v  192 (632)
                      |||+++++++++++++||+|+.|+++.+++++|++|+||.++++|||+|||+|+++++|+||+++||||++|++++||++
T Consensus       330 tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~i  409 (550)
T 3p9d_G          330 VGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLI  409 (550)
T ss_dssp             TCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred             hCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCccccc
Q psy17074        193 VAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLD  268 (632)
Q Consensus       193 vpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d  268 (632)
                      |||||++|++++.+|++++ ..+++      +++++++| ++||+.||++|+ |||+|+.+++.+|++.|.  +..+|||
T Consensus       410 VpGGGa~e~~~s~~L~~~~~~~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d  482 (550)
T 3p9d_G          410 VAGGGATEMEVSKCLRDYSKTIAGK------QQMIINAF-AKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVV  482 (550)
T ss_dssp             EETTTHHHHHHHHHHHHHHHTCCST------THHHHHHH-HHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBC
T ss_pred             ccCCCHHHHHHHHHHHHHhhcCChH------HHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeee
Confidence            9999999999999999987 44555      55677888 999999999998 999999999999998762  3358999


Q ss_pred             cccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccc
Q psy17074        269 SVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYF  313 (632)
Q Consensus       269 ~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~  313 (632)
                      +  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|.+..
T Consensus       483 ~--~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  528 (550)
T 3p9d_G          483 F--ETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKG  528 (550)
T ss_dssp             S--SSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCC
T ss_pred             C--CCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCC
Confidence            9  99999999999999999   9999999999999999999998753

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=4.9e-54  Score=478.41  Aligned_cols=270  Identities=20%  Similarity=0.338  Sum_probs=253.9

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCc-----ChhHHHHHHHCCceEEEeCCchhHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLK  107 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I-----~~~al~~l~~~~I~~~~~v~~~~l~  107 (632)
                      +...++++++.++++++++.++++|++++.+++++|++.|+||||++++|     +++|++||.++||++++++++.+|+
T Consensus       243 ~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le  322 (528)
T 3p9d_D          243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIE  322 (528)
T ss_dssp             CCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHH
T ss_pred             ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHH
Confidence            34456688999999999999999999999999999999999999999999     9999999999999999999999999


Q ss_pred             HHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC--C-CceEEEEecCCChhhHHHHHHHHHHHHHHHH
Q psy17074        108 RTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK--N-ARTCTIIVRGGAEQFLEETERSLHDAIMIVR  184 (632)
Q Consensus       108 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~--~-~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~  184 (632)
                      |||++|||+++++++++++++||+|+.|++..+++++|++|++|.  + +++|||+|||+|+++++|+||+++||||++|
T Consensus       323 ~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r  402 (528)
T 3p9d_D          323 FLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIR  402 (528)
T ss_dssp             HHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998  6 8999999999999999999999999999999


Q ss_pred             HHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCC
Q psy17074        185 RTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDN  262 (632)
Q Consensus       185 ~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~  262 (632)
                      +++++|++|||||++|++++.+|++++. ..+++      ++++++| ++||+.||++|+ |||+|+.+++.+|++.|..
T Consensus       403 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~e------q~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~  475 (528)
T 3p9d_D          403 CLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQ------AFIWQEF-ASALEVIPTTLAENAGLNSIKVVTELRSKHEN  475 (528)
T ss_dssp             HHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHH------HTTHHHH-HHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCS
T ss_pred             HHHhcCCccCCCCHHHHHHHHHHHHHhhccChHH------HHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999873 45554      5567888 999999999998 9999999999999987742


Q ss_pred             --CccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccc
Q psy17074        263 --AEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQ  311 (632)
Q Consensus       263 --~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~  311 (632)
                        ..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|..
T Consensus       476 ~~~~~G~d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  527 (528)
T 3p9d_D          476 GELNDGISV--RRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFS  527 (528)
T ss_dssp             SSCCCCCCS--SSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBC
T ss_pred             cCCccceec--CCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheec
Confidence              3479999  99999999999999999   99999999999999999999863

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=7.4e-54  Score=477.68  Aligned_cols=266  Identities=24%  Similarity=0.368  Sum_probs=252.9

Q ss_pred             ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEE
Q psy17074         38 KEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV  117 (632)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~i  117 (632)
                      +++++.++++++++.++++|++++++++++|++.|+||||++++|++++++||.++||++++++++.+|+|+|++|||++
T Consensus       246 ~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~i  325 (527)
T 3p9d_B          246 FGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEV  325 (527)
T ss_dssp             CCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCCC
T ss_pred             cCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEE
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC
Q psy17074        118 MTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGG  197 (632)
Q Consensus       118 i~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGG  197 (632)
                      +++++++++++||+|+.|+++.+++++|++|+||.++++|||+|||+|+.+++|+||+++||||++|+++++|++|||||
T Consensus       326 v~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGG  405 (527)
T 3p9d_B          326 VSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGG  405 (527)
T ss_dssp             CSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTT
T ss_pred             ecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccC--CCcccccccccc
Q psy17074        198 AIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERD--NAEIRLDSVEEY  273 (632)
Q Consensus       198 a~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~  273 (632)
                      ++|++++.+|++++ ..++++      ++++++| ++||+.||++|+ |||+|+.+++.+|++.|.  +..+|||+  .+
T Consensus       406 a~e~~~s~~L~~~~~~~~g~e------q~~i~~~-a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~--~~  476 (527)
T 3p9d_B          406 CAEMVMSKAVDTEAQNIDGKK------SLAVEAF-ARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDL--NN  476 (527)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHH------HHHHHHH-HHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCS--SS
T ss_pred             HHHHHHHHHHHHHHhccCcHH------HHHHHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEEC--CC
Confidence            99999999999987 345664      5577888 999999999998 999999999999998763  33589999  99


Q ss_pred             chhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        274 QKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       274 ~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      |+|+||.+.|||||+   +++|++|+++|+++||+|++|.+.
T Consensus       477 g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  518 (527)
T 3p9d_B          477 GTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRAR  518 (527)
T ss_dssp             TTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             CCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence            999999999999999   999999999999999999999876

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=3.4e-53  Score=473.81  Aligned_cols=271  Identities=20%  Similarity=0.336  Sum_probs=251.6

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC---------C-cEEEEecCcChhHHHHHHHCCceEEEeCC
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASG---------A-QVVLSKLPIGDVATQYFADRDMFCAGRVP  102 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g---------~-~lvi~~~~I~~~al~~l~~~~I~~~~~v~  102 (632)
                      +++.++++++.++++++++.++++|++++...+++|+..+         + +|||++++|+++|++||.++||+++++++
T Consensus       242 ~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~  321 (546)
T 3p9d_F          242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAK  321 (546)
T ss_dssp             SCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCC
T ss_pred             ccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCC
Confidence            3455678899999999999999999999999999998865         2 39999999999999999999999999999


Q ss_pred             chhHHHHHHHhCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHHH
Q psy17074        103 EEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIMI  182 (632)
Q Consensus       103 ~~~l~~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~  182 (632)
                      +.+|+|||++|||+++++++++++++||+|++|+++.+++++|++|+||.++..|||+|||+|+++++|+||+++||||+
T Consensus       322 ~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~  401 (546)
T 3p9d_F          322 RRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRA  401 (546)
T ss_dssp             HHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCCSCEEEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCCceEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeEEecCChhHHHHHHHHhh---hc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHH
Q psy17074        183 VRRTIRNHAVVAGGGAIEMELSKALRD---YS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELK  257 (632)
Q Consensus       183 ~~~a~~~~~vvpGGGa~e~~ls~~L~~---~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~  257 (632)
                      +|++++||++|||||++|+++|.+|++   |+ ..+++      +++++++| ++||+.||++|+ |||+|+.+++.+|+
T Consensus       402 ~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~~~~v~~l~  474 (546)
T 3p9d_F          402 VANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGK------TKTGIEAF-AEALLVIPKTLVKNSGFDPLDVLAMVE  474 (546)
T ss_dssp             HHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSH------HHHHHHHH-HHHHHHHHHHHHTTTCCTTTTCCHHHH
T ss_pred             HHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchH------HHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999999999999998   46 44555      45577888 999999999998 99999999999999


Q ss_pred             hccC-------CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        258 AERD-------NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       258 ~~~~-------~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +.|.       +..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|...
T Consensus       475 ~~h~~~~~~~~~~~~G~d~--~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~  537 (546)
T 3p9d_F          475 DELDDAQDSDETRYVGVDL--NIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAG  537 (546)
T ss_dssp             HHHHHHTTSTTSSCCCCBT--TTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred             HHhhhhhcccCCceeeEeC--CCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7763       33489999  99999999999999999   999999999999999999999754

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=3.9e-49  Score=436.67  Aligned_cols=259  Identities=34%  Similarity=0.493  Sum_probs=179.6

Q ss_pred             EEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-------------------------------------
Q psy17074        370 LIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-------------------------------------  412 (632)
Q Consensus       370 mI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-------------------------------------  412 (632)
                      ||++++|+++|||||+|||++|+++||+|+|++++|++||+++                                     
T Consensus         1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~   80 (500)
T 3aq1_B            1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH   80 (500)
T ss_dssp             ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999                                     


Q ss_pred             -------------ccCCchhhHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhccc------CC-CCcEEEEEecCC
Q psy17074        413 -------------QKSDSGEYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------LP-LNMIGIKKVAGG  472 (632)
Q Consensus       413 -------------~~~~~~~~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~------~~-~~~I~I~ki~Gg  472 (632)
                                   .+++. .+++.|.++|+|+|+||+.++|+++|++|+++|+.+++++      +| +++|+|++++||
T Consensus        81 A~~~a~~~L~~~s~~v~~-~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~  159 (500)
T 3aq1_B           81 AAEKCREILETITIAISP-DDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGG  159 (500)
T ss_dssp             HHHHHHHHHHHHCEECCT-TCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESS
T ss_pred             HHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCC
Confidence                         11211 2478999999999999999999999999999999999742      55 678999999999


Q ss_pred             CcccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17074        473 ALEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA  552 (632)
Q Consensus       473 ~~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~  552 (632)
                      ++.||++++||+|+++|.||+   ||++++||||++++++|++++++.++++.++++++++++.++|++++++++++|++
T Consensus       160 ~~~ds~lv~G~v~dk~~~~~~---m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~  236 (500)
T 3aq1_B          160 SIDDSELIDGLVIDKERSHPN---MPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIA  236 (500)
T ss_dssp             CGGGCEEESEEEESCCCSSTT---SCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHT
T ss_pred             CccceEEEeeeEEeecCCCCC---CcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999996   68999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        553 SGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       553 ~gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      .|+||||++++|++++++||.++||++|+++++++|+|||++|||+++++++++++++||+|++|+++++|+++|+||+|
T Consensus       237 ~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g  316 (500)
T 3aq1_B          237 SGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTG  316 (500)
T ss_dssp             TCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred             hCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=100.00  E-value=2.7e-45  Score=407.65  Aligned_cols=259  Identities=16%  Similarity=0.276  Sum_probs=228.3

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhcccc
Q psy17074        336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAE  411 (632)
Q Consensus       336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~  411 (632)
                      +..+|.++|.+|+.||..|+++|+|||||+||||||++++|+|+|||||+|||++|+++||    .|+|++++|++||++
T Consensus         4 ~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e   83 (547)
T 1kp8_A            4 DVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDA   83 (547)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccc
Confidence            3457889999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             c--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHH
Q psy17074        412 I--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFF  444 (632)
Q Consensus       412 ~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l  444 (632)
                      +                          +|..                     ...+++.|.++|+++++      ++++|
T Consensus        84 ~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~------~~~~i  157 (547)
T 1kp8_A           84 AGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISAN------SDETV  157 (547)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTT------SCHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhcc------chhHH
Confidence            9                          1110                     01246789999998854      56899


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhcc
Q psy17074        445 SKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       445 ~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      ++|+++|+.+|+.+   +.|+|.  .|+++.+| ++++||+|+++|.||||.    +|++.++||||+++++++      
T Consensus       158 ~~liadAv~~V~~d---g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~I------  226 (547)
T 1kp8_A          158 GKLIAEAMDKVGKE---GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI------  226 (547)
T ss_dssp             HHHHHHHHHHHCTT---SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEE------
T ss_pred             HHHHHHHHHHhCcC---CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcC------
Confidence            99999999999754   567776  89999999 999999999999999973    588899999999999974      


Q ss_pred             CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEe-----cCCchhH
Q psy17074        520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAG-----RVPEEDL  588 (632)
Q Consensus       520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~-----~v~~~~L  588 (632)
                             ++++++           .++++++++.|+||||++++|+++|++||..+      +|+||+     ++++.+|
T Consensus       227 -------s~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~l  288 (547)
T 1kp8_A          227 -------SNIREM-----------LPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAML  288 (547)
T ss_dssp             -------CCGGGT-----------HHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHH
T ss_pred             -------CCHHHH-----------HHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHH
Confidence                   455554           35689999999999999999999999999995      579999     5578899


Q ss_pred             HHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        589 KRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       589 ~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||++|||+++++     ++++++++||+|++|++   ++++++||+|
T Consensus       289 e~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g  334 (547)
T 1kp8_A          289 QDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDG  334 (547)
T ss_dssp             HHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEE
T ss_pred             HHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcC
Confidence            99999999999996     99999999999999977   5799999974

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=100.00  E-value=1.8e-47  Score=425.73  Aligned_cols=241  Identities=17%  Similarity=0.200  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEecc-----ccCC
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMTT-----AHDL  124 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~~-----l~~l  124 (632)
                      +.++++++++.|+||||++++|+++|++||..|+|           |+|+++++++|+|||++|||+++++     ++++
T Consensus       231 l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~  310 (543)
T 1we3_A          231 LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENA  310 (543)
T ss_dssp             HHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGC
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccC
Confidence            45789999999999999999999999999999755           5555999999999999999999995     8999


Q ss_pred             CCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhH
Q psy17074        125 NDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFL  169 (632)
Q Consensus       125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l  169 (632)
                      ++++||+|+.|   ++++++|++|+||.++                                   ++|||+|||+|+.++
T Consensus       311 ~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l  387 (543)
T 1we3_A          311 TLSMLGRAERV---RITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETEL  387 (543)
T ss_dssp             CGGGCEEEEEE---EECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHH
T ss_pred             CHHHCCCceEE---EEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHH
Confidence            99999999999   5578999999998853                                   789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccccccc-CCCC
Q psy17074        170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKI  247 (632)
Q Consensus       170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~  247 (632)
                      +|+||+++||||++|+++++| +|||||++|++++.+|++++. ..++      +++++++| ++||+.||++|+ |||+
T Consensus       388 ~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~  459 (543)
T 1we3_A          388 KEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGD------EATGAKIV-RRALEEPARQIAENAGY  459 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHH------HHHHHHHH-HHHTTHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCch------HHHHHHHH-HHHHHHHHHHHHHHCCC
Confidence            999999999999999999999 999999999999999999884 3455      45577888 999999999998 9999


Q ss_pred             chhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074        248 ALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA  314 (632)
Q Consensus       248 ~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~  314 (632)
                      |+.+++.+|++.|.+..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|.+.-+
T Consensus       460 d~~~vv~~l~~~h~~~~~G~d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~  527 (543)
T 1we3_A          460 EGSVIVQQILAETKNPRYGFNA--ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPE  527 (543)
T ss_dssp             CHHHHHHHHHHCCSCTTEEEET--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSC
T ss_pred             CHHHHHHHHHHhcCCCCEEEeC--CCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            9999999999877666689999  99999999999999999   99999999999999999999998644

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=100.00  E-value=4.6e-47  Score=421.91  Aligned_cols=241  Identities=15%  Similarity=0.156  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEecc-----ccCC
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMTT-----AHDL  124 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~~-----l~~l  124 (632)
                      +.++++++++.|+||||++++|+++|++||..|+|           |+|+++++++|+|||++|||+++++     ++++
T Consensus       232 l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~  311 (547)
T 1kp8_A          232 MLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKA  311 (547)
T ss_dssp             THHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTC
T ss_pred             HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccC
Confidence            35789999999999999999999999999999876           6666999999999999999999996     9999


Q ss_pred             CCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhH
Q psy17074        125 NDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFL  169 (632)
Q Consensus       125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l  169 (632)
                      ++++||+|++|   ++++++|++|+||.++                                   ++|||+|||+|+.++
T Consensus       312 ~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l  388 (547)
T 1kp8_A          312 TLEDLGQAKRV---VINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEM  388 (547)
T ss_dssp             CTTTSEEEEEE---EECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHH
T ss_pred             CHHHCCceeEE---EEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHH
Confidence            99999999999   5578999999999864                                   789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074        170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA  248 (632)
Q Consensus       170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~  248 (632)
                      +|+||+++||||++|+++++| +|||||++|++++.+|++++..+++      +++++++| ++||+.||++|+ |||+|
T Consensus       389 ~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~g~------~q~~i~~~-a~ALe~ip~~la~NaG~d  460 (547)
T 1kp8_A          389 KEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRGQNAD------QNVGIKVA-LRAMEAPLRQIVLNCGEE  460 (547)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCCSSHH------HHHHHHHH-HHHTTHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhccCch------HHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999 9999999999999999998754444      45577888 999999999998 99999


Q ss_pred             hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccccc
Q psy17074        249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADR  316 (632)
Q Consensus       249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k  316 (632)
                      +.+++.+|++.  +..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|++.-+.+
T Consensus       461 ~~~vv~~l~~~--~~~~G~d~--~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~  527 (547)
T 1kp8_A          461 PSVVANTVKGG--DGNYGYNA--ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKND  527 (547)
T ss_dssp             HHHHHHHHHHS--CTTEEEET--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred             HHHHHHHHHhc--CCCEeEeC--CCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccC
Confidence            99999999865  34589999  99999999999999999   9999999999999999999999874433

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=100.00  E-value=2.7e-47  Score=424.02  Aligned_cols=240  Identities=15%  Similarity=0.177  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEecc-----ccCC
Q psy17074         61 LYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMTT-----AHDL  124 (632)
Q Consensus        61 i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~~-----l~~l  124 (632)
                      +.++++++++.|+||||++++|+++|++||..|+|           |+|+++++++|+|||++|||+++++     ++++
T Consensus       233 l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~  312 (545)
T 1iok_A          233 MVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENV  312 (545)
T ss_dssp             -----------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccC
Confidence            34788999999999999999999999999999876           6666999999999999999999996     9999


Q ss_pred             CCCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhH
Q psy17074        125 NDSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFL  169 (632)
Q Consensus       125 ~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l  169 (632)
                      ++++||+|++|   ++++++|++|+||.++                                   ++|||+|||+|+.++
T Consensus       313 ~~~~LG~a~~v---~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l  389 (545)
T 1iok_A          313 TIDMLGRAKKV---SINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEV  389 (545)
T ss_dssp             -CTTSEEEEEE---EECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHH
T ss_pred             CHHHcCcCcEE---EEecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHH
Confidence            99999999999   5578999999999853                                   789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074        170 EETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA  248 (632)
Q Consensus       170 ~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~  248 (632)
                      +|+||+++||||++|+++++| +|||||++|++++.+|++++...++      +++++++| ++||+.||++|+ |||+|
T Consensus       390 ~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~g~------~q~~i~~~-a~ALe~ip~~La~NaG~d  461 (545)
T 1iok_A          390 KERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSGANSD------QDAGIAII-RRALEAPMRQIAENAGVD  461 (545)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCCSSHH------HHHHHHHH-HHHTTHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhccCch------HHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999 9999999999999999988753444      45577888 999999999998 99999


Q ss_pred             hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccccc
Q psy17074        249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFA  314 (632)
Q Consensus       249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~  314 (632)
                      +.+++.+|++.| +..+|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|++.-+
T Consensus       462 ~~~vv~~l~~~~-~~~~G~d~--~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~  527 (545)
T 1iok_A          462 GAVVAGKVRESS-DKAFGFNA--QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPE  527 (545)
T ss_dssp             HHHHHHHHHSCC-STTEEEET--TTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC-
T ss_pred             HHHHHHHHHhhc-CCCeeEeC--CCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCc
Confidence            999999999776 45589999  99999999999999999   99999999999999999999998744

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=100.00  E-value=2.6e-45  Score=406.86  Aligned_cols=258  Identities=19%  Similarity=0.272  Sum_probs=168.2

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChH----hHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA----AKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~----akll~~~a~~q~~~~  412 (632)
                      ..+|.++|.+|+.||..|+++|||||||+||||||++++|+|+|||||+|||++|+++||+    |+|++++|++||+++
T Consensus         5 ~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~   84 (546)
T 3rtk_A            5 IAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVA   84 (546)
T ss_dssp             --------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC---
T ss_pred             eeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhh
Confidence            4588999999999999999999999999999999999999999999999999999999998    999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+++.|.++|+++++       +++|+
T Consensus        85 GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-------~~~i~  157 (546)
T 3rtk_A           85 GDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-------DQSIG  157 (546)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-------CHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-------chHHH
Confidence                                      1110                     01246788999998764       56899


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                      +++++|+.+|+.+   +.|+|.+.. +...||++++||+|+++|.||||.    +|++.++||||+++++++        
T Consensus       158 ~liadAv~~V~~d---gvI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kI--------  225 (546)
T 3rtk_A          158 DLIAEAMDKVGNE---GVITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV--------  225 (546)
T ss_dssp             HHHHHHHHHSCTT---SEEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEE--------
T ss_pred             HHHHHHHHHhccC---CceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCcc--------
Confidence            9999999999754   568887544 455789999999999999999984    689999999999999974        


Q ss_pred             ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHCC------cEEEecCC-----chhHHH
Q psy17074        522 AEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKR  590 (632)
Q Consensus       522 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~~------I~~v~~v~-----~~~L~r  590 (632)
                           ++++++.           ++++++++.|+|||||+++|++++++||..++      +++|+.+.     +.+|+|
T Consensus       226 -----s~~~~l~-----------~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~  289 (546)
T 3rtk_A          226 -----STVKDLL-----------PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQD  289 (546)
T ss_dssp             -----CCSTTTH-----------HHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHH
T ss_pred             -----CCHHHHH-----------HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHH
Confidence                 4555553           45899999999999999999999999999754      68888775     788999


Q ss_pred             HHHHcCCeEee-----cccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        591 TMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       591 Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ||++|||++++     +++++++++||+|++|+   ++++++++|+|
T Consensus       290 ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g  333 (546)
T 3rtk_A          290 MAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEG  333 (546)
T ss_dssp             HHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEE
T ss_pred             HHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcC
Confidence            99999999999     69999999999999997   58999999974

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=100.00  E-value=1.2e-44  Score=402.93  Aligned_cols=257  Identities=20%  Similarity=0.276  Sum_probs=226.6

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.++|.+|+.||..|+++|+|||||+||||||++++|+|+|||||+|||++|+++||    +|+|++++|++||+++
T Consensus         5 ~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~   84 (543)
T 1we3_A            5 LVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVA   84 (543)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheec
Confidence            457889999999999999999999999999999999999999999999999999999999    9999999999999999


Q ss_pred             --------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHHH
Q psy17074        413 --------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFFS  445 (632)
Q Consensus       413 --------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l~  445 (632)
                                                +|..                     ...+++.|.++|+++++       +++|+
T Consensus        85 GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~-------~~~i~  157 (543)
T 1we3_A           85 GDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-------DPEVG  157 (543)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-------CHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcC-------CHHHH
Confidence                                      1110                     01246788999988753       58899


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccC
Q psy17074        446 KMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       446 ~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                      +|+++|+.+|+.+   +.|+|.  .|++++|| ++++||+|+++|.||||.    +|++.++||||+++++++       
T Consensus       158 ~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I-------  225 (543)
T 1we3_A          158 KLIADAMEKVGKE---GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-------  225 (543)
T ss_dssp             HHHHHHHHTTCTT---SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCB-------
T ss_pred             HHHHHHHHHhCcC---CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCc-------
Confidence            9999999999754   567776  89999998 999999999999999973    588889999999999974       


Q ss_pred             CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHH------CCcEEEe-----cCCchhHH
Q psy17074        521 NAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD------RDMFCAG-----RVPEEDLK  589 (632)
Q Consensus       521 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~------~~I~~v~-----~v~~~~L~  589 (632)
                            ++++++           .++++++++.|+||||++++|++++++||..      .+|++|+     ++++++|+
T Consensus       226 ------s~~~~l-----------~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le  288 (543)
T 1we3_A          226 ------SNVREL-----------LPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLK  288 (543)
T ss_dssp             ------CCHHHH-----------HHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHH
T ss_pred             ------CCHHHH-----------HHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHH
Confidence                  466665           3569999999999999999999999999998      4679999     55788999


Q ss_pred             HHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        590 RTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       590 rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |||++|||+++++     ++++++++||+|+.|++   +++++++|+|
T Consensus       289 ~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g  333 (543)
T 1we3_A          289 DIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGG  333 (543)
T ss_dssp             HHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEE
T ss_pred             HHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcC
Confidence            9999999999996     89999999999999976   6799999964

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=100.00  E-value=2e-45  Score=409.11  Aligned_cols=259  Identities=16%  Similarity=0.255  Sum_probs=197.6

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhcccc
Q psy17074        336 ENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAE  411 (632)
Q Consensus       336 ~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~  411 (632)
                      +..+|.++|.+|+.||..|+++|+|||||+||||||++++|+|+|||||+||||+|+++||    +|+|++++|++||++
T Consensus         5 ~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e   84 (545)
T 1iok_A            5 EVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDE   84 (545)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGG
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccc
Confidence            3457889999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             c--------------------------ccCC---------------------chhhHHHHHHHHhhhcCCccccchhhHH
Q psy17074        412 I--------------------------QKSD---------------------SGEYRGLLEKCAATALSSKLIHQQKGFF  444 (632)
Q Consensus       412 ~--------------------------~~~~---------------------~~~~~~~L~~va~t~l~sK~~~~~~~~l  444 (632)
                      +                          +|..                     ...+++.|.++|+++++      ++++|
T Consensus        85 ~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~va~iS~~------~~~~i  158 (545)
T 1iok_A           85 AGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTISAN------GESFI  158 (545)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCSTTTTTHHHHHTTT------TCHHH
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHhhcC------CchhH
Confidence            9                          1110                     01134567777777653      56899


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEecCCCcccc-eeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhcc
Q psy17074        445 SKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDS-LLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAER  519 (632)
Q Consensus       445 ~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS-~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~  519 (632)
                      ++|+++|+.+|+.+   +.|+|.  .|+++.+| ++++||+|+++|.||||.    +|++.++||||++++++++     
T Consensus       159 ~~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~-----  228 (545)
T 1iok_A          159 GQQIAEAMQRVGNE---GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS-----  228 (545)
T ss_dssp             HHHHHHHHHHHCTT---SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-----
T ss_pred             HHHHHHHHHHhccC---CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-----
Confidence            99999999999754   456666  89999999 999999999999999973    5888899999999999854     


Q ss_pred             CCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCccHHHHHHHHHC------CcEEEe-----cCCchhH
Q psy17074        520 DNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADR------DMFCAG-----RVPEEDL  588 (632)
Q Consensus       520 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~~~I~~~al~~L~~~------~I~~v~-----~v~~~~L  588 (632)
                              +++++           .++++++++.|+||||++++|+++|++||..+      +|++|+     ++++++|
T Consensus       229 --------~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~l  289 (545)
T 1iok_A          229 --------SLQPM-----------VPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAML  289 (545)
T ss_dssp             --------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHH
T ss_pred             --------CHHHH-----------HHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHH
Confidence                    44443           35688999999999999999999999999995      568988     6678899


Q ss_pred             HHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        589 KRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       589 ~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +|||++|||+++++     ++++++++||+|++|++   ++++|+||+|
T Consensus       290 e~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g  335 (545)
T 1iok_A          290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDG  335 (545)
T ss_dssp             HHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESC
T ss_pred             HHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeC
Confidence            99999999999996     99999999999999977   5799999975

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=100.00  E-value=7.5e-47  Score=419.14  Aligned_cols=240  Identities=15%  Similarity=0.168  Sum_probs=210.1

Q ss_pred             HHHHHHHHHcCCcEEEEecCcChhHHHHHHHCC------ce-----EEEeCCchhHHHHHHHhCCEEec-----cccCCC
Q psy17074         62 YEKLDKIHASGAQVVLSKLPIGDVATQYFADRD------MF-----CAGRVPEEDLKRTMKACGGAVMT-----TAHDLN  125 (632)
Q Consensus        62 ~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~------I~-----~~~~v~~~~l~~ia~~tGa~ii~-----~l~~l~  125 (632)
                      .++++++++.|+||||++++|+++|++||..|+      +.     +|++.++.+|+|||++|||++++     ++++++
T Consensus       232 ~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~  311 (546)
T 3rtk_A          232 LPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENAD  311 (546)
T ss_dssp             HHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCC
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCC
Confidence            567899999999999999999999999999875      23     34566799999999999999999     689999


Q ss_pred             CCCCCCcceEEEEEEcceEEEEEeccCCC-----------------------------------ceEEEEecCCChhhHH
Q psy17074        126 DSVLGTCAVFDERQIGSERFNVFSGCKNA-----------------------------------RTCTIIVRGGAEQFLE  170 (632)
Q Consensus       126 ~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~  170 (632)
                      +++||+|++|   ++++++|++|+||.++                                   ++|||+|||+|+.+++
T Consensus       312 ~~~LG~a~~v---~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~  388 (546)
T 3rtk_A          312 LSLLGKARKV---VVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELK  388 (546)
T ss_dssp             TTTSEEEEEE---EECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHH
T ss_pred             HhhCCeeEEE---EEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Confidence            9999999999   5789999999998763                                   4899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCch
Q psy17074        171 ETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIAL  249 (632)
Q Consensus       171 E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~  249 (632)
                      |+||+++||||++|+++++| +|||||++|++++.+|++++ .+++      +++++++| ++||+.||++|+ |||+|+
T Consensus       389 E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~-~~g~------eq~~i~~~-a~ALe~ip~~La~NaG~d~  459 (546)
T 3rtk_A          389 ERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK-LEGD------EATGANIV-KVALEAPLKQIAFNSGLEP  459 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC-CCTT------HHHHHHHH-HHHTTHHHHHHHTTTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc-cccH------HHHHHHHH-HHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999 99999999999999999987 5555      45577888 999999999998 999999


Q ss_pred             hhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccccccccccc
Q psy17074        250 LNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQYFADRV  317 (632)
Q Consensus       250 ~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~~~~k~  317 (632)
                      .+++.+|++.+  .++|||+  .+|+|+||.+.|||||+   +++|++|+++|+++||+|++|.+.-+.++
T Consensus       460 ~~vv~~l~~~~--~~~G~d~--~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~  526 (546)
T 3rtk_A          460 GVVAEKVRNLP--AGHGLNA--QTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEK  526 (546)
T ss_dssp             HHHHHHHHHSC--TTEECCS--SSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHhhc--CCEeEcC--CCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999998753  3489999  99999999999999999   99999999999999999999998865554

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=100.00  E-value=1.1e-33  Score=271.07  Aligned_cols=156  Identities=25%  Similarity=0.449  Sum_probs=137.3

Q ss_pred             cccceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17074        474 LEDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHAS  553 (632)
Q Consensus       474 ~~dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~  553 (632)
                      ++||++++|++|++++.++   +||++++||||++++|+|+++++++++++.++++++++++.++|++++++++++|++.
T Consensus         1 ~~dS~lv~Gvvl~k~~~~~---~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~   77 (178)
T 1gml_A            1 MEDSCVLRGVMINKDVTHP---RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQL   77 (178)
T ss_dssp             --CCSEEEEEEESCCCSST---TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEEEeccccCC---CCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3689999999999999987   4899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        554 GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       554 gv~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      |++||||+++|+|.|++||.++||++++++++++|+|||++|||+++++++++++++||+ |+.|+++++|+++|+||+|
T Consensus        78 g~nVVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~g  157 (178)
T 1gml_A           78 KPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD  157 (178)
T ss_dssp             CCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCcEEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999999999999985

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=100.00  E-value=2.5e-33  Score=263.54  Aligned_cols=150  Identities=32%  Similarity=0.506  Sum_probs=146.7

Q ss_pred             EEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q psy17074        480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVL  559 (632)
Q Consensus       480 i~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi  559 (632)
                      ++|++|++++.++   +||++++||||++++|+|+++++++++++.++++++++++.++|++++++++++|++.|++|||
T Consensus         1 i~Gvv~~k~~~~~---~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl   77 (159)
T 1ass_A            1 MSGIVIDKEKVHS---KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVL   77 (159)
T ss_dssp             CCCEEESCCCSCT---TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CceEEEecccCCC---CCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEE
Confidence            4799999999987   4899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        560 SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       560 ~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+++|+|.|++||.++||++++++++++|+|||++|||+++++++++++++||+|+.|+++++|+++|+||+|
T Consensus        78 ~~k~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g  150 (159)
T 1ass_A           78 CQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG  150 (159)
T ss_dssp             ESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEES
T ss_pred             ECCccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=99.95  E-value=1.3e-27  Score=228.94  Aligned_cols=135  Identities=24%  Similarity=0.519  Sum_probs=115.1

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.++++++++.++++|++++++++++|+++|+||||++++|+|.|++||.++||++++++++.+|+|||++
T Consensus        39 ~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~a  118 (178)
T 1gml_A           39 YKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARA  118 (178)
T ss_dssp             CC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHH
T ss_pred             CccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecCCChh
Q psy17074        113 CGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQ  167 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~  167 (632)
                      |||++++++++++++.||+ |+.|+++.+|+++|++|+||+++.+|||+|||+|.+
T Consensus       119 tGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~~~~~TIllRG~~~~  174 (178)
T 1gml_A          119 CGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASHH  174 (178)
T ss_dssp             HCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC----
T ss_pred             hCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCCCCEEEEEEECCCcc
Confidence            9999999999999999999 999999999999999999999999999999999975

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=99.90  E-value=6.7e-24  Score=199.26  Aligned_cols=121  Identities=35%  Similarity=0.588  Sum_probs=115.0

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      +..++++++.++++++++.++++|+++++.++++|+++|+||||++++|+|.|++||.++||++++++++.+|+|||++|
T Consensus        34 ~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v~~v~~~dleria~at  113 (159)
T 1ass_A           34 KKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKAT  113 (159)
T ss_dssp             CHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHH
T ss_pred             cccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHh
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074        114 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA  154 (632)
Q Consensus       114 Ga~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~  154 (632)
                      ||++++++++++++.||+|+.|+++.+|+++|++|+||++.
T Consensus       114 Ga~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~  154 (159)
T 1ass_A          114 GAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH  154 (159)
T ss_dssp             TCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred             CCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence            99999999999999999999999999999999999999864

>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1

Probab=99.72  E-value=2.7e-17  Score=147.69  Aligned_cols=123  Identities=16%  Similarity=0.240  Sum_probs=107.8

Q ss_pred             eEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q psy17074        482 GVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV  557 (632)
Q Consensus       482 Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~v  557 (632)
                      ||.|||||.||||.    +|...++||+||+++.+             +++.+++.++           ++++++.|.||
T Consensus         1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~llP~-----------LE~v~~~~~pL   56 (145)
T 1srv_A            1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNVRELLPI-----------LEQVAQTGKPL   56 (145)
T ss_dssp             CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCHHHHHHH-----------HHHHHTTTCCE
T ss_pred             CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCHHHHHHH-----------HHHHHHHCCCE
Confidence            89999999999994    47889999999999998             5677777655           99999999999


Q ss_pred             EEEeCCccHHHHHHHHHC------CcEEEecC-----CchhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEE
Q psy17074        558 VLSKLPIGDVATQYFADR------DMFCAGRV-----PEEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQ  621 (632)
Q Consensus       558 vi~~~~I~~~al~~L~~~------~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~  621 (632)
                      +|++++|+.+|+..|..|      +++||+.|     ++..|++||.+|||++++.     +++.+.++||+|++|.+  
T Consensus        57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v--  134 (145)
T 1srv_A           57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI--  134 (145)
T ss_dssp             EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE--
T ss_pred             EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE--
Confidence            999999999999999885      57999999     4889999999999999984     67888899999999976  


Q ss_pred             EcCeEEEEec
Q psy17074        622 IGSERDTLNR  631 (632)
Q Consensus       622 ig~~~~~~~~  631 (632)
                       ..+..+++.
T Consensus       135 -tkd~TtIv~  143 (145)
T 1srv_A          135 -TKDETTIVG  143 (145)
T ss_dssp             -CSSCEEEEE
T ss_pred             -cCCCeEEeC
Confidence             566666654

>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}

Probab=99.71  E-value=1.8e-17  Score=155.75  Aligned_cols=128  Identities=16%  Similarity=0.218  Sum_probs=111.5

Q ss_pred             ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17074        477 SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA  552 (632)
Q Consensus       477 S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~  552 (632)
                      .++++||.|||||.||||.    +|...++||+||+++.+             +++.+++.++           ++.+.+
T Consensus         2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkK-------------Is~i~~ilP~-----------LE~~~~   57 (194)
T 3m6c_A            2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDK-------------ISSLPDLLPL-----------LEKVAG   57 (194)
T ss_dssp             CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSE-------------ECCHHHHHHH-----------HHHHHH
T ss_pred             eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCc-------------cCCHHHHHHH-----------HHHHHH
Confidence            4689999999999999995    48889999999999998             5677777655           899999


Q ss_pred             cCCcEEEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeE
Q psy17074        553 SGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAV  616 (632)
Q Consensus       553 ~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~  616 (632)
                      .|.||+|++++|+.+|+..|..|      +++||+.|.     +..|++||.+|||++++.     +++++.++||+|++
T Consensus        58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~  137 (194)
T 3m6c_A           58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR  137 (194)
T ss_dssp             HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred             hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence            99999999999999999999886      589999995     788999999999999984     78889999999999


Q ss_pred             EEEEEEcCeEEEEec
Q psy17074        617 FDERQIGSERDTLNR  631 (632)
Q Consensus       617 v~~~~ig~~~~~~~~  631 (632)
                      |.+   ..+..+++.
T Consensus       138 v~v---tkd~T~iv~  149 (194)
T 3m6c_A          138 VVV---SKDDTVIVD  149 (194)
T ss_dssp             EEE---CSSCEEEEE
T ss_pred             EEE---cCCceEEec
Confidence            976   456666554

>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A

Probab=99.68  E-value=1.5e-16  Score=149.88  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=108.2

Q ss_pred             EeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy17074        481 DGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ  556 (632)
Q Consensus       481 ~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~  556 (632)
                      +||.|||||.||||.    +|...++||+||+++.+             |++.+++.++           ++.+++.+.|
T Consensus        13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~ilP~-----------LE~v~~~~rp   68 (201)
T 3osx_A           13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNIRELLPV-----------LEGVAKASKP   68 (201)
T ss_dssp             CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCHHHHHHH-----------HHHHHTSSCC
T ss_pred             cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCHHHHHHH-----------HHHHHHhCCC
Confidence            599999999999995    47789999999999998             5677777655           9999999999


Q ss_pred             EEEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEE
Q psy17074        557 VVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDER  620 (632)
Q Consensus       557 vvi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~  620 (632)
                      |+|++++|+.+||..|..|      +++||+.|.     +..|++||.+|||++++.     +++++.++||+|++|.+ 
T Consensus        69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~v-  147 (201)
T 3osx_A           69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVI-  147 (201)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE-
T ss_pred             eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEE-
Confidence            9999999999999999885      589999996     677999999999999984     78889999999999976 


Q ss_pred             EEcCeEEEEec
Q psy17074        621 QIGSERDTLNR  631 (632)
Q Consensus       621 ~ig~~~~~~~~  631 (632)
                        ..+..+++.
T Consensus       148 --tkd~TtIv~  156 (201)
T 3osx_A          148 --NKDTTTIID  156 (201)
T ss_dssp             --CSSCEEEEE
T ss_pred             --cCCceEEec
Confidence              456666554

>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1

Probab=99.16  E-value=1.2e-11  Score=111.20  Aligned_cols=89  Identities=18%  Similarity=0.268  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.+.++++.+.|.+|+|++++|+++|+..|..|++           |+|++.|+..|+|||.+|||++++     +++
T Consensus        40 ~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le  119 (145)
T 1srv_A           40 RELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLE  119 (145)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccc
Confidence            3578889999999999999999999999999999843           788899999999999999999997     577


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEec
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSG  150 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~  150 (632)
                      +.+.++||+|++|   +++++.++++.|
T Consensus       120 ~~~~~~LG~a~~v---~vtkd~TtIv~G  144 (145)
T 1srv_A          120 NATLSMLGRAERV---RITKDETTIVGG  144 (145)
T ss_dssp             GCCGGGCEEEEEE---EECSSCEEEEEE
T ss_pred             cCCHhHCCccCEE---EEcCCCeEEeCC
Confidence            8889999999999   889999888875

>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A

Probab=99.05  E-value=5.5e-11  Score=112.16  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.++++++.+.+.||+|++++|+++|+..|.-|++           |+|++.|+..|+|||.+|||++++     +++
T Consensus        53 ~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le  132 (201)
T 3osx_A           53 RELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELE  132 (201)
T ss_dssp             HHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred             HHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccc
Confidence            3578899999999999999999999999999999843           788888999999999999999998     578


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEec
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSG  150 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~  150 (632)
                      +++.++||+|++|   +++++.++++.|
T Consensus       133 ~~~~~~LG~a~~V---~vtkd~TtIv~G  157 (201)
T 3osx_A          133 KATLEDLGQAKRV---VINKDTTTIIDG  157 (201)
T ss_dssp             GCCGGGCEEEEEE---EECSSCEEEEEE
T ss_pred             cCCHhhCCCccEE---EEcCCceEEecC
Confidence            8899999999999   777777666655

>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}

Probab=99.05  E-value=6.9e-11  Score=111.22  Aligned_cols=89  Identities=16%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----ccc
Q psy17074         59 KILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAH  122 (632)
Q Consensus        59 ~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~  122 (632)
                      +.+.+.++++.+.|.||+|++++|+++|+..|.-|++           |+|++.|+..|+|||.+|||++++     +++
T Consensus        46 ~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le  125 (194)
T 3m6c_A           46 PDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLR  125 (194)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGG
T ss_pred             HHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccc
Confidence            3578889999999999999999999999999999843           788899999999999999999998     578


Q ss_pred             CCCCCCCCCcceEEEEEEcceEEEEEec
Q psy17074        123 DLNDSVLGTCAVFDERQIGSERFNVFSG  150 (632)
Q Consensus       123 ~l~~~~lG~~~~v~~~~i~~~~~~~~~~  150 (632)
                      +++.++||+|++|   .++++.++++.|
T Consensus       126 ~~~~~~LG~a~~v---~vtkd~T~iv~G  150 (194)
T 3m6c_A          126 EVGLEVLGSARRV---VVSKDDTVIVDG  150 (194)
T ss_dssp             GCCGGGCEEEEEE---EECSSCEEEEEE
T ss_pred             cCCHHHCCCccEE---EEcCCceEEecC
Confidence            8899999999999   777777766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	632
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	1e-32
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	4e-26
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	1e-12
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	3e-31
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	4e-26
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	2e-12
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	6e-31
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	6e-25
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	2e-12
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	6e-28
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	4e-25
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	4e-10
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	1e-25
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	2e-19
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	3e-19
d1a6db3	107	d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai	4e-16
d1q3qa3	107	d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai	7e-16
d1a6da3	105	d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai	5e-14
d1ioka1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par	2e-10
d1kp8a1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc	4e-10
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	2e-08

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  120 bits (303), Expect = 1e-32
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAE 539
           + G+   K   ++     P   KN KIAL++  LE+K     A++++    + Q  ++ E
Sbjct: 1   MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQE 57

Query: 540 WKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAV 599
                + ++KI  SGA VVL +  I DVA  Y A   ++   RV + D+++  KA G  +
Sbjct: 58  TNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKI 117

Query: 600 MTTAHDLNDSVLGTCAVFDERQIGSER 626
           +T   DL  SVLG     +ER+IG +R
Sbjct: 118 VTDLDDLTPSVLGEAETVEERKIGDDR 144

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  102 bits (255), Expect = 4e-26
 Identities = 41/120 (34%), Positives = 63/120 (52%)

Query: 33  KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK + E + +  +P + Q  ++ E     + ++KI  SGA VVL +  I DVA  Y A 
Sbjct: 33  IKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK 92

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + D+++  KA G  ++T   DL  SVLG     +ER+IG +R     GCK
Sbjct: 93  EGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
              P   KN KIAL++  LE+K     A++++    + Q  ++ E     + ++KI  SG
Sbjct: 13  SKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSG 72

Query: 296 AQVVLSKLPIGDVATQYFADR 316
           A VVL +  I DVA  Y A  
Sbjct: 73  ANVVLCQKGIDDVAQHYLAKE 93

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score =  116 bits (292), Expect = 3e-31
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK 541
           GV   K   +      PK  +N KIAL+N  LE+K    +A+I + S ++    ++ E K
Sbjct: 2   GVVIDKEVVHPR---MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEK 58

Query: 542 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMT 601
           +L + +D I  +GA VV  +  I D+A  Y A   +    RV + D+++  KA G  ++T
Sbjct: 59  MLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVT 118

Query: 602 TAHDLNDSVLGTCAVFDERQIGSER 626
              DL    LG   V +ER++  E 
Sbjct: 119 NVKDLTPEDLGYAEVVEERKLAGEN 143

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score =  102 bits (255), Expect = 4e-26
 Identities = 37/122 (30%), Positives = 60/122 (49%)

Query: 32  KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
           + KK + + +     PD+    ++ E K+L + +D I  +GA VV  +  I D+A  Y A
Sbjct: 31  EVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLA 90

Query: 92  DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGC 151
              +    RV + D+++  KA G  ++T   DL    LG   V +ER++  E      GC
Sbjct: 91  KYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGC 150

Query: 152 KN 153
           KN
Sbjct: 151 KN 152

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 238 QPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ 297
            PK  +N KIAL+N  LE+K    +A+I + S ++    ++ E K+L + +D I  +GA 
Sbjct: 14  MPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGAN 73

Query: 298 VVLSKLPIGDVATQYFADR 316
           VV  +  I D+A  Y A  
Sbjct: 74  VVFVQKGIDDLAQHYLAKY 92

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score =  115 bits (290), Expect = 6e-31
 Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWK 541
           G+   K   + G    P   K+ KIALL+  LE+K    +  +R++     QK +  E  
Sbjct: 1   GIIVDKEKVHPG---MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEEN 57

Query: 542 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMT 601
           +L E +DKI + GA VV+++  I D+A  Y +   ++   RV + D+ +  KA G ++++
Sbjct: 58  MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 117

Query: 602 TAHDLNDSVLGTCAVFDERQIGSER 626
           T  +++ S LGT    ++ ++G + 
Sbjct: 118 TIDEISSSDLGTAERVEQVKVGEDY 142

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 98.9 bits (246), Expect = 6e-25
 Identities = 36/121 (29%), Positives = 66/121 (54%)

Query: 33  KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFAD 92
            KK + +     E+P   QK +  E  +L E +DKI + GA VV+++  I D+A  Y + 
Sbjct: 31  IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR 90

Query: 93  RDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK 152
             ++   RV + D+ +  KA G ++++T  +++ S LGT    ++ ++G +     +GCK
Sbjct: 91  AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 150

Query: 153 N 153
           N
Sbjct: 151 N 151

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 27/81 (33%), Positives = 43/81 (53%)

Query: 236 EMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASG 295
              P   K+ KIALL+  LE+K    +  +R++     QK +  E  +L E +DKI + G
Sbjct: 11  PGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVG 70

Query: 296 AQVVLSKLPIGDVATQYFADR 316
           A VV+++  I D+A  Y +  
Sbjct: 71  ANVVITQKGIDDMAQHYLSRA 91

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  108 bits (270), Expect = 6e-28
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 476 DSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKV 535
           DS ++ GV   K   +       +  KNP+I LL+  LE K      +I +   E++ ++
Sbjct: 1   DSCVLRGVMINKDVTHPRM---RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 57

Query: 536 VDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC 595
           +  E + +++  + I      VV+++  I D+A  Y    ++    RV + D  R  +AC
Sbjct: 58  LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 117

Query: 596 GGAVMTTAHDLNDSVLGTCA-VFDERQIGSER 626
           G  +++   +L +  +GT A + + ++IG E 
Sbjct: 118 GARIVSRPEELREDDVGTGAGLLEIKKIGDEY 149

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 99.7 bits (248), Expect = 4e-25
 Identities = 33/133 (24%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 32  KKKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFA 91
           + KK + + + E    +++ +++  E + +++  + I      VV+++  I D+A  Y  
Sbjct: 36  EYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLM 95

Query: 92  DRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCA-VFDERQIGSERFNVFSG 150
             ++    RV + D  R  +ACG  +++   +L +  +GT A + + ++IG E F   + 
Sbjct: 96  RANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD 155

Query: 151 CKNARTCTIIVRG 163
           CK+ + CTI++RG
Sbjct: 156 CKDPKACTILLRG 168

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 19/78 (24%), Positives = 38/78 (48%)

Query: 239 PKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV 298
            +  KNP+I LL+  LE K      +I +   E++ +++  E + +++  + I      V
Sbjct: 20  RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDV 79

Query: 299 VLSKLPIGDVATQYFADR 316
           V+++  I D+A  Y    
Sbjct: 80  VITEKGISDLAQHYLMRA 97

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 39/85 (45%), Positives = 59/85 (69%)

Query: 328 ILLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATI 387
           +++L EGT+   G+     NI A + + + VRTTLGP+GMDK++VD  G   ++ND ATI
Sbjct: 1   VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATI 60

Query: 388 MKLLDIVHPAAKTLVDIAKSQDAEI 412
           +  +D+ HPAAK +V++AK+QD E 
Sbjct: 61  LDKIDLQHPAAKMMVEVAKTQDKEA 85

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 35/71 (49%), Positives = 53/71 (74%)

Query: 341 KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKT 400
           K  +  NI A  A+ ++VR++LGPRGMDK++VD  G   I+NDG TI+K +D+ HPAAK 
Sbjct: 1   KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 60

Query: 401 LVDIAKSQDAE 411
           +V+++K+QD+ 
Sbjct: 61  MVEVSKTQDSF 71

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 85.2 bits (210), Expect = 3e-19
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPA 397
            QGK    +NI A +A+ DAVRTTLGP+GMDK++VD  G   ISNDGATI+K +D+ HP 
Sbjct: 2   EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT 61

Query: 398 AKTLVDIAKSQD 409
           AK +V+++K+QD
Sbjct: 62  AKMIVEVSKAQD 73

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 72.2 bits (177), Expect = 4e-16
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------LPLNMIGIKKVAGGAL 474
           + LL K A T+L+SK     K   +++  +AV S+ +L      +  + I + K  GGA+
Sbjct: 5   KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAI 64

Query: 475 EDSLLVDGVS---FKKTFAYAGFEMQPKTYKNPKIALLNIELE 514
           +D+ L++       +    +   EM  ++  +  + ++   LE
Sbjct: 65  DDTQLINKAVSILVRGETEHVVDEM-ERSITD-SLHVVASALE 105

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 71.5 bits (175), Expect = 7e-16
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGAL 474
              L K AAT+++ K     K   +K+ V+AV  + +      ++ L+ I  +K AG  +
Sbjct: 6   EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 65

Query: 475 EDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELK-AERD 520
           E+S LV  V+                    + AL +    +K    D
Sbjct: 66  EESELVKAVTILIRGG------TEHVIDEVERALEDAVKVVKDVMED 106

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDL------LPLNMIGIKKVAGGAL 474
              L K A TALS K       F + +VV AV ++ ++      +    I + K  GG++
Sbjct: 3   DATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSV 62

Query: 475 EDSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELEL-KAERD 520
            D+  +  VS                    + AL +    +   + D
Sbjct: 63  NDTQFISAVSILIRGG------TDHVVSEVERALNDAIRVVAITKED 103

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTL 401
             +     + DAV+ TLGP+G + +I    G   I+ DG ++ K +++        A+ +
Sbjct: 14  RMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMV 73

Query: 402 VDIAKSQDAE 411
            ++A   + E
Sbjct: 74  REVASRTNDE 83

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (141), Expect = 4e-10
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 346 SNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTL 401
             +     + DAV+ TLGP+G + ++    G  TI+ DG ++ + +++        A+ +
Sbjct: 14  KMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMV 73

Query: 402 VDIAKSQDAE 411
            ++A   +  
Sbjct: 74  KEVASKANDA 83

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 352 QAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIV----HPAAKTLVDIAKS 407
            AV +AV+ TLGPRG + ++  + G  TI+ DG T+ K +++     +  A+ L ++A  
Sbjct: 19  NAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASK 78

Query: 408 QDAE 411
            +  
Sbjct: 79  TNDV 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	632
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.97
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	99.97
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.97
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	99.97
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	99.91
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	99.9
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.89
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.88
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.84
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.8
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.74
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.69
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.68
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.67
d1srva_	145	GroEL, A domain {Thermus thermophilus [TaxId: 274]	99.65
d1kida_	193	GroEL, A domain {Escherichia coli [TaxId: 562]}	99.63
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.62
d1sjpa2	184	GroEL, A domain {Mycobacterium tuberculosis, GroEL	99.6
d1ioka2	176	GroEL, A domain {Paracoccus denitrificans [TaxId:	99.58
d1a6da3	105	Thermosome, I domain {Archaeon Thermoplasma acidop	99.54
d1q3qa3	107	Thermosome, I domain {Archaeon Thermococcus sp. ks	99.52
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	99.52
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	99.5
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	99.49
d1a6db3	107	Thermosome, I domain {Archaeon Thermoplasma acidop	99.46
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.39
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.21
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	99.16
d1srva_	145	GroEL, A domain {Thermus thermophilus [TaxId: 274]	98.94
d1sjpa2	184	GroEL, A domain {Mycobacterium tuberculosis, GroEL	98.87
d1ioka2	176	GroEL, A domain {Paracoccus denitrificans [TaxId:	98.86
d1kida_	193	GroEL, A domain {Escherichia coli [TaxId: 562]}	98.85
d1sjpa3	89	GroEL, I domain {Mycobacterium tuberculosis, GroEL	98.02
d1we3a3	86	GroEL, I domain {Thermus thermophilus [TaxId: 274]	96.84
d1kp8a3	97	GroEL, I domain {Escherichia coli [TaxId: 562]}	96.67
d1ioka3	97	GroEL, I domain {Paracoccus denitrificans [TaxId:	96.29
d1ioka3	97	GroEL, I domain {Paracoccus denitrificans [TaxId:	94.57
d1kp8a3	97	GroEL, I domain {Escherichia coli [TaxId: 562]}	91.77

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.97  E-value=3.6e-32  Score=252.02  Aligned_cols=150  Identities=32%  Similarity=0.506  Sum_probs=146.9

Q ss_pred             EEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Q psy17074        480 VDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVL  559 (632)
Q Consensus       480 i~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi  559 (632)
                      ++|++|++.+.|+   +||+.++||||++++++|++++++.++++.+++++++++|.++|++++.+++++|++.|++||+
T Consensus         1 i~Gvv~~k~~~~~---~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl   77 (152)
T d1assa_           1 MSGIVIDKEKVHS---KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVL   77 (152)
T ss_dssp             CCCEEESCCCSCT---TSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CeEEEEeCccCCC---CCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEE
Confidence            4799999999987   4899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        560 SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       560 ~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      |+++||+.+++||.++||++++++++.+|+|||++|||+++++++++++++||+|++|+++.+|+++|+||+|
T Consensus        78 ~~~~I~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~G  150 (152)
T d1assa_          78 CQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMG  150 (152)
T ss_dssp             ESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEES
T ss_pred             EeccccHHHHHHHHHcCCccccCCCHHHHHHHHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.97  E-value=1.5e-31  Score=248.18  Aligned_cols=149  Identities=31%  Similarity=0.475  Sum_probs=146.2

Q ss_pred             EeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q psy17074        481 DGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLS  560 (632)
Q Consensus       481 ~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~  560 (632)
                      .|++|++.+.|+   +||+.++||||++++|+|++++++.++++.++++++++.|.++|++++.+++++|++.|++||+|
T Consensus         1 kGvv~~k~~~~~---~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~   77 (153)
T d1q3qa2           1 RGVVIDKEVVHP---RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFV   77 (153)
T ss_dssp             SSEEESCCCSST---TSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEeCCCCCc---cCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceee
Confidence            499999999988   48999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        561 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       561 ~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      +++||+.+++||.++||++++++++.+|+|||++|||+++++++++++++||+|+.|+++.+|+++|++|+|
T Consensus        78 ~k~I~~~a~~~l~~~gI~~v~~v~~~dl~ria~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~g  149 (153)
T d1q3qa2          78 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEG  149 (153)
T ss_dssp             SSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEEC
T ss_pred             cCCCcHHHHHHHHHcCCceeccCCHHHHHHHHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.97  E-value=1.2e-31  Score=248.49  Aligned_cols=148  Identities=28%  Similarity=0.459  Sum_probs=145.4

Q ss_pred             eEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Q psy17074        482 GVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQVVLSK  561 (632)
Q Consensus       482 Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~vvi~~  561 (632)
                      |++|++++.|+   +||+.++||||++++++|++++++.++++.++++++++.|.++|++++.+++++|++.|++||+|+
T Consensus         1 Gvv~~k~~~~~---~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~   77 (152)
T d1a6db2           1 GIIVDKEKVHP---GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ   77 (152)
T ss_dssp             EEEESCCCSST---TSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CEEEeccCCCC---CCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEec
Confidence            89999999988   489999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCeeeeEEEEEEEcCeEEEEecC
Q psy17074        562 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGTCAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       562 ~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~  632 (632)
                      ++||+.+++||.++||++++++++.+|+|||++|||+++++++++++++||+|++|++.++|+++|+||+|
T Consensus        78 k~Idd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~g  148 (152)
T d1a6db2          78 KGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTG  148 (152)
T ss_dssp             SCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.97  E-value=7.3e-31  Score=247.59  Aligned_cols=154  Identities=25%  Similarity=0.441  Sum_probs=135.3

Q ss_pred             cceeEEeEEEecccCCCCCcCCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17074        476 DSLLVDGVSFKKTFAYAGFEMQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGA  555 (632)
Q Consensus       476 dS~li~Giv~~~~~~~~~~~~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv  555 (632)
                      ||++++|++|++++.|+   .||+.++||||++++++|++++++.++++.++++++++.|.++|++++.+++++|++.|+
T Consensus         1 DS~li~Gvvi~k~~~~~---~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~   77 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHP---RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKP   77 (168)
T ss_dssp             CCSEEEEEEESCCCSST---TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEEEEecccCCc---CCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            78999999999999987   489999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCccHHHHHHHHHCCcEEEecCCchhHHHHHHHcCCeEeecccCCCCCCCee-eeEEEEEEEcCeEEEEecC
Q psy17074        556 QVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERDTLNRE  632 (632)
Q Consensus       556 ~vvi~~~~I~~~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~  632 (632)
                      +||+|+++||+.+++||.++||++++++++.+|+|||++|||+++++++++++++||+ |+.++++.+|+++|++|+|
T Consensus        78 ~vv~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~  155 (168)
T d1gmla_          78 DVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD  155 (168)
T ss_dssp             SEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ceEEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999998 6778889999999999974

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.91  E-value=2e-24  Score=203.06  Aligned_cols=131  Identities=24%  Similarity=0.527  Sum_probs=112.5

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..+.++++.++++++++.|+++|++++.+++++|+++|++||||+++|++.|++||.++||++++++++.+|+|||++
T Consensus        37 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~  116 (168)
T d1gmla_          37 YKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARA  116 (168)
T ss_dssp             CC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHH
T ss_pred             ccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCC-cceEEEEEEcceEEEEEeccCCCceEEEEecC
Q psy17074        113 CGGAVMTTAHDLNDSVLGT-CAVFDERQIGSERFNVFSGCKNARTCTIIVRG  163 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~-~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG  163 (632)
                      |||++++++++++++++|+ |+.++++.+++++|++|++|+++.+|||+|||
T Consensus       117 tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~TIllRG  168 (168)
T d1gmla_         117 CGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG  168 (168)
T ss_dssp             HCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC
T ss_pred             HCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCCCCEEEEEEeC
Confidence            9999999999999999998 56677788999999999999999999999998

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.90  E-value=1.3e-23  Score=194.41  Aligned_cols=122  Identities=30%  Similarity=0.517  Sum_probs=118.0

Q ss_pred             hccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHH
Q psy17074         33 KKKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKA  112 (632)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~  112 (632)
                      ++..++++++.++++++++.|+++|++++..++++|+++|+||||++++|++.|++||.++||++++++++.+|++||++
T Consensus        32 ~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~k~I~~~a~~~l~~~gI~~v~~v~~~dl~ria~~  111 (153)
T d1q3qa2          32 VKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA  111 (153)
T ss_dssp             CCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHH
T ss_pred             cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccceeecCCCcHHHHHHHHHcCCceeccCCHHHHHHHHHh
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074        113 CGGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA  154 (632)
Q Consensus       113 tGa~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~  154 (632)
                      |||+++++++++++++||+|+.|+++.+++++|++|+||++|
T Consensus       112 tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~P  153 (153)
T d1q3qa2         112 TGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP  153 (153)
T ss_dssp             HCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC
T ss_pred             hCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCCCC
Confidence            999999999999999999999999999999999999999875

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.89  E-value=9.6e-24  Score=194.81  Aligned_cols=121  Identities=30%  Similarity=0.534  Sum_probs=116.6

Q ss_pred             ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHh
Q psy17074         34 KKKKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKAC  113 (632)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~t  113 (632)
                      +.-.+++++.++++++++.|+++|++++..++++|.+.|+|||||+++|++.|++||.++||++++++++.+|+|||++|
T Consensus        32 ~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~Idd~a~~~l~k~gI~~v~~v~~~dl~rla~~t  111 (152)
T d1a6db2          32 KKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKAT  111 (152)
T ss_dssp             CCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHH
T ss_pred             ccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCCCcHHHHHHHHHcCcchhccCCHHHHHHHHHHh
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccCCC
Q psy17074        114 GGAVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCKNA  154 (632)
Q Consensus       114 Ga~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~  154 (632)
                      ||+++++++++++++||+|+.|+++++|++++++|+||++|
T Consensus       112 Ga~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~np  152 (152)
T d1a6db2         112 GASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP  152 (152)
T ss_dssp             TCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred             CCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCCCC
Confidence            99999999999999999999999999999999999999875

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.88  E-value=3.8e-23  Score=190.82  Aligned_cols=117  Identities=33%  Similarity=0.581  Sum_probs=112.9

Q ss_pred             ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCC
Q psy17074         36 KKKEEEEEEEEPDEYQKVVDAEWKILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGG  115 (632)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~E~~~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa  115 (632)
                      .+.++++.++++++++.|+++|++++..++++|.++|+|||||+++|++.+++||.++||++++++++++|+|||++|||
T Consensus        36 ~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nvvl~~~~I~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa  115 (152)
T d1assa_          36 TEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGA  115 (152)
T ss_dssp             HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTC
T ss_pred             ccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccHHHHHHHHHcCCccccCCCHHHHHHHHHHhCC
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccCCCCCCCCCcceEEEEEEcceEEEEEeccC
Q psy17074        116 AVMTTAHDLNDSVLGTCAVFDERQIGSERFNVFSGCK  152 (632)
Q Consensus       116 ~ii~~l~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~  152 (632)
                      +++++++++++++||+|++|+++.+++++|++|+||+
T Consensus       116 ~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk  152 (152)
T d1assa_         116 KIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK  152 (152)
T ss_dssp             CCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred             ceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence            9999999999999999999999999999999999985

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.84  E-value=9.5e-23  Score=204.62  Aligned_cols=84  Identities=46%  Similarity=0.736  Sum_probs=82.3

Q ss_pred             hhcccCccccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhc
Q psy17074        329 LLLKEGTENSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQ  408 (632)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q  408 (632)
                      .+|++|++.++|.+++..|+.||..|+++++|||||+||+|||++++|+++|||||+||+++++++||.++|++++|++|
T Consensus         2 ~~~~~~~~~~~g~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~~   81 (258)
T d1q3qa1           2 VILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQ   81 (258)
T ss_dssp             CCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHH
T ss_pred             EEeCCCCccccCHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy17074        409 DAEI  412 (632)
Q Consensus       409 ~~~~  412 (632)
                      ++++
T Consensus        82 ~~~~   85 (258)
T d1q3qa1          82 DKEA   85 (258)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9998

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.80  E-value=9.3e-22  Score=195.18  Aligned_cols=142  Identities=22%  Similarity=0.293  Sum_probs=124.6

Q ss_pred             EecCCChhh-HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccc
Q psy17074        160 IVRGGAEQF-LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEM  237 (632)
Q Consensus       160 ~lrG~t~~~-l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~  237 (632)
                      +-+|-++.. .+.++++++++++.++....+..++||||++|+++|..|++++ +..++      +++++++| ++||+.
T Consensus        94 i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~------~q~~i~~~-a~Ale~  166 (243)
T d1a6db1          94 INQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGR------QQLAIEKF-ADAIEE  166 (243)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSS------HHHHHHHH-HHHHTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCH------HHHHHHHH-HHHhhc
Confidence            345666664 5568889999999999998999999999999999999999988 44455      46678898 999999


Q ss_pred             cccccc-CCCCchhhHHHHHHhccC--CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccc
Q psy17074        238 QPKTYK-NPKIALLNIELELKAERD--NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVAT  310 (632)
Q Consensus       238 ip~~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~  310 (632)
                      ||++|+ |||+|+.+++.+|+..|.  +..+|+|.  .+|+++||.+.|||||+   +++|++|+++|+++||+|+||+
T Consensus       167 ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~--~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         167 IPRALAENAGLDPIDILLKLRAEHAKGNKTYGINV--FTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEET--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             cCccccccCCCChhHHHHHHHHHHhCCCCceeEEC--cCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998 999999999999988765  33479999  99999999999999999   9999999999999999999984

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.74  E-value=7.3e-20  Score=181.98  Aligned_cols=153  Identities=33%  Similarity=0.455  Sum_probs=112.4

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc-----
Q psy17074        338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI-----  412 (632)
Q Consensus       338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~-----  412 (632)
                      .+|.+++..|+.||+.|+++|++||||+||+|||+++.|+++|||||+||++++.++||.++|+++++++|+.++     
T Consensus         2 ~~g~~a~~~~~~~~~~i~~~v~~tlGP~G~~~~i~~~~g~~~it~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGtt   81 (245)
T d1a6da1           2 EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTT   81 (245)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCCCCeEEeccHhHHhhhcchhhHHHHHHHHHHHhhHHhhcccch
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             ---------------------ccCCc--------hhhHHHHHHHH-----------------hhhcCCccccchhhHHHH
Q psy17074        413 ---------------------QKSDS--------GEYRGLLEKCA-----------------ATALSSKLIHQQKGFFSK  446 (632)
Q Consensus       413 ---------------------~~~~~--------~~~~~~L~~va-----------------~t~l~sK~~~~~~~~l~~  446 (632)
                                           +|...        ....+.|..++                 +....++.......+..+
T Consensus        82 t~ivla~~ll~~~~~ll~~G~~p~~i~~g~~~a~~~a~~~L~~~a~~~~v~g~ga~e~~l~~~l~~~a~~~~g~eq~a~~  161 (245)
T d1a6da1          82 TAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIE  161 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHCCCCchhhhhhHHHHHHHHHHHHHhhccceeecCchhHHHHHHHHHHHHHhccCCHHHHHHH
Confidence                                 11110        00011111111                 111112223344566677


Q ss_pred             HHHHHHHHhc----ccCCCCcEEEEEecCCCcccceeEEeEEEecccC
Q psy17074        447 MVVDAVMSLD----DLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFA  490 (632)
Q Consensus       447 li~~A~~~v~----~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~  490 (632)
                      ++.+|+..+.    .+...+.+.++...++...++.+..|+.++++..
T Consensus       162 ~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g~i  209 (245)
T d1a6da1         162 AFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGV  209 (245)
T ss_dssp             HHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEE
T ss_pred             HHHHHHhhhhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCCeE
Confidence            7778877664    3445566666666666666777888998887654

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=5.4e-19  Score=176.97  Aligned_cols=231  Identities=15%  Similarity=0.159  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHHHHHHc--------CCcEEEEecCcChhHHHHHHHCCceEEEeCCchhHHHHHHHhCCEEeccc---
Q psy17074         53 VVDAEWKILYEKLDKIHAS--------GAQVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMKACGGAVMTTA---  121 (632)
Q Consensus        53 ~~~~E~~~i~~~~~~i~~~--------g~~lvi~~~~I~~~al~~l~~~~I~~~~~v~~~~l~~ia~~tGa~ii~~l---  121 (632)
                      |-+++++.|..-++.+.+.        |.|++|++..    ...++.+.|+..+++++..   +.....|+.++..+   
T Consensus         6 f~~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~----g~~~itkdg~ti~~~i~l~---d~~e~~~a~~~~~~~~~   78 (255)
T d1we3a1           6 FDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKF----GSPTITKDGVTVAKEVELE---DHLENIGAQLLKEVASK   78 (255)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSS----SSCEEECCHHHHHHHCCCS---SHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCC----CCceEecchhhhhhhcccc---chhhhhHHHHHHHhhhh
Confidence            4567788899999999886        8899986642    2235566666666656432   22223333333221   


Q ss_pred             -cCCCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCC-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChh
Q psy17074        122 -HDLNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGA-EQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAI  199 (632)
Q Consensus       122 -~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t-~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~  199 (632)
                       ++...+..+++-             ++.+..-....+.+..|.+ ..+.+++++++++|+++++....+..++||||++
T Consensus        79 ~~~~~gDgttt~~-------------vl~~~~l~~~~~~i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~  145 (255)
T d1we3a1          79 TNDVAGDGTTTAT-------------VLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVT  145 (255)
T ss_dssp             HHHHHSSCHHHHH-------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHH
T ss_pred             hHHHhhcchhHHH-------------HHHHHHHHhhhhHHhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhh
Confidence             111111111111             0000000112333444544 5778999999999999999988888899999999


Q ss_pred             HHHHHHHHhhhc-cCCCccccCCCCCcceeeeccccccccccccc-CCCCchhhHHHHHHhccCCCccccccccccchhH
Q psy17074        200 EMELSKALRDYS-GLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIALLNIELELKAERDNAEIRLDSVEEYQKVV  277 (632)
Q Consensus       200 e~~ls~~L~~~~-~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~  277 (632)
                      +++++..++.+. ..+++++.      +++++ ++||+.||++++ |+|+++.+++.++...+.+.++|||.  .+|++.
T Consensus       146 ~~~~~~~~~~~~~~~~g~~~~------g~~iv-a~Al~~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~--~~g~~~  216 (255)
T d1we3a1         146 LLRAISAVEELIKKLEGDEAT------GAKIV-RRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNA--ATGEFV  216 (255)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHH------HHHHH-HHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEET--TTTEEE
T ss_pred             hhhhhhhhHhhccCCChHHHH------HHHHH-HHHHhhhHHHHHhhcccccceeeeeeeecccCCceeEEe--eccEEe
Confidence            999999999887 44666544      45676 999999999998 99999999999888877777799999  999999


Q ss_pred             hHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        278 DAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       278 d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      ||++.|||||+   ++++++|++++.++|++|++|++.
T Consensus       217 D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~  254 (255)
T d1we3a1         217 DMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEK  254 (255)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred             ehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcC
Confidence            99999999999   999999999999999999999874

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.68  E-value=9.2e-19  Score=173.91  Aligned_cols=138  Identities=25%  Similarity=0.363  Sum_probs=117.0

Q ss_pred             cCCChhh-HHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhcc-CCCccccCCCCCcceeeeccccccccc
Q psy17074        162 RGGAEQF-LEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSG-LGDKVRTGHPSDNSFHAISPDGFEMQP  239 (632)
Q Consensus       162 rG~t~~~-l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~-~~~~~~~g~~~~~~~~~~~a~ALe~ip  239 (632)
                      .|.++.. .+..+.++++++..++...+++ ++||||++|++++.+|.+++. ..++      +++++++| ++||+.||
T Consensus       100 ~G~~p~~i~~g~~~a~~~a~~~L~~~a~~~-~v~g~ga~e~~l~~~l~~~a~~~~g~------eq~a~~~~-a~Ale~ip  171 (245)
T d1a6da1         100 QGVHPTVISNGYRLAVNEARKIIDEIAEKS-FLWGGGAVEAELAMRLAKYANSVGGR------EQLAIEAF-AKALEIIP  171 (245)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHCEEC-EEETTTHHHHHHHHHHHHHHHTSCHH------HHHHHHHH-HHHHTHHH
T ss_pred             CCCCchhhhhhHHHHHHHHHHHHHhhccce-eecCchhHHHHHHHHHHHHHhccCCH------HHHHHHHH-HHHHhhhh
Confidence            3555554 4457777888888888766666 999999999999999999884 3444      45577887 99999999


Q ss_pred             cccc-CCCCchhhHHHHHHhccCCC--ccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheecccccccc
Q psy17074        240 KTYK-NPKIALLNIELELKAERDNA--EIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVA  309 (632)
Q Consensus       240 ~~La-NaG~~~~~v~~~l~~~~~~~--~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii  309 (632)
                      ++|+ |+|+|+.+++.+++..|.+.  .+|+|.  .+|.+.||.+.|||||+   ++++++|+++|+++|++|+||
T Consensus       172 ~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~--~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         172 RTLAENAGIDPINTLIKLKADDEKGRISVGVDL--DNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEET--TTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             hhhhccCCCCchhhhhhhhcccccCCceeeEEc--cCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence            9998 99999999999998776533  369999  99999999999999999   899999999999999999986

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.67  E-value=9.7e-19  Score=165.37  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCC-eEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccccc-CCCCc
Q psy17074        171 ETERSLHDAIMIVRRTIRNH-AVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKTYK-NPKIA  248 (632)
Q Consensus       171 E~~~~i~Dal~~~~~a~~~~-~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~La-NaG~~  248 (632)
                      ++++.+++|+..+...+++. +.+||||..+++....+.... .+++++      ++++++ ++||+.||++|+ |||.+
T Consensus        52 ~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~~-~~~~e~------~g~~i~-~~Al~~p~~~I~~NaG~~  123 (180)
T d1sjpa1          52 GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELK-LEGDEA------TGANIV-KVALEAPLKQIAFNSGLE  123 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGSC-CCTHHH------HHHHHH-HHHTTHHHHHHHHTTTSC
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhhh-hhhHHH------HHHHHH-HHHHHHHHHHHHHhcCCC
Confidence            67889999999998888776 589999999988777666543 234444      455776 999999999998 99999


Q ss_pred             hhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccc
Q psy17074        249 LLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIG  306 (632)
Q Consensus       249 ~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~  306 (632)
                      +..++.+++..+  .++|||+  .+++|+||++.|||||+   ++||++|+|+|+++||||
T Consensus       124 ~~~v~~~~~~~~--~~~G~d~--~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte  180 (180)
T d1sjpa1         124 PGVVAEKVRNLP--AGHGLNA--QTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE  180 (180)
T ss_dssp             HHHHHHHHHTSC--TTEECCT--TTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             chhhhhhhhccc--cccCccc--cccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence            999999997654  4589999  99999999999999999   999999999999999986

>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2.9e-16  Score=141.76  Aligned_cols=124  Identities=16%  Similarity=0.234  Sum_probs=108.2

Q ss_pred             eEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q psy17074        482 GVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV  557 (632)
Q Consensus       482 Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~v  557 (632)
                      ||.||+||.||||.    +|...++||+||++|.++             ++.+++.++           ++...+.+.||
T Consensus         1 G~~~d~Gy~Sp~Fvtd~~~~~~~l~~p~ILi~d~kI-------------~~~~~ilp~-----------Le~~~~~~rPL   56 (145)
T d1srva_           1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-------------SNVRELLPI-----------LEQVAQTGKPL   56 (145)
T ss_dssp             CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEE-------------CCHHHHHHH-----------HHHHHTTTCCE
T ss_pred             CCccccCccCCccccCcccCEEEecCceeeeccccc-------------ccHHHHHHH-----------HHHHHHhCCcE
Confidence            89999999999995    477789999999999994             567776654           89999999999


Q ss_pred             EEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEEE
Q psy17074        558 VLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDERQ  621 (632)
Q Consensus       558 vi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~  621 (632)
                      +|++++|+++|++.|..|      +++||+.|+     ++.|++||.+|||++++.     +++++.++||+|+++.+  
T Consensus        57 lIIA~di~~eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~v--  134 (145)
T d1srva_          57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI--  134 (145)
T ss_dssp             EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE--
T ss_pred             EEEeCccCHHHHHHHHHHHhcCceEEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEEE--
Confidence            999999999999999985      489999996     789999999999999974     67788899999999966  


Q ss_pred             EcCeEEEEecC
Q psy17074        622 IGSERDTLNRE  632 (632)
Q Consensus       622 ig~~~~~~~~~  632 (632)
                       ..++.+++.|
T Consensus       135 -tkd~T~ii~G  144 (145)
T d1srva_         135 -TKDETTIVGG  144 (145)
T ss_dssp             -CSSCEEEEEE
T ss_pred             -eCCccEEeCC
Confidence             6777777654

>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.2e-16  Score=148.53  Aligned_cols=128  Identities=14%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             ceeEEeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17074        477 SLLVDGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHA  552 (632)
Q Consensus       477 S~li~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~  552 (632)
                      -++.+||.||+||.||||.    +|...++||+||++|.+             +++.+++.++           ++.+.+
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~k-------------I~~~~~i~p~-----------Le~~~~   59 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKK-------------ISNIREMLPV-----------LEAVAK   59 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSE-------------ECCHHHHHHH-----------HHHHHH
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCC-------------cccHHHHHHH-----------HHHHHh
Confidence            4578899999999999995    47778999999999999             4677777665           888889


Q ss_pred             cCCcEEEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeE
Q psy17074        553 SGAQVVLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAV  616 (632)
Q Consensus       553 ~gv~vvi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~  616 (632)
                      .+.||+|++++|++.|++.|..|      +++||+.|+     ++.|++||.+|||++++.     +++++.++||+|++
T Consensus        60 ~~~pLlIIA~di~~~aL~~Lv~N~~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~k  139 (193)
T d1kida_          60 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKR  139 (193)
T ss_dssp             HTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred             hCCcEEEEeccccHHHHHHHHHhhhccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccE
Confidence            99999999999999999999986      489999995     678999999999999984     67888999999999


Q ss_pred             EEEEEEcCeEEEEec
Q psy17074        617 FDERQIGSERDTLNR  631 (632)
Q Consensus       617 v~~~~ig~~~~~~~~  631 (632)
                      +.+   ..++.+++.
T Consensus       140 v~i---tk~~T~ii~  151 (193)
T d1kida_         140 VVI---NKDTTTIID  151 (193)
T ss_dssp             EEE---CSSCEEEEE
T ss_pred             EEE---ecCceEEEc
Confidence            976   455555553

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.62  E-value=2e-16  Score=156.40  Aligned_cols=72  Identities=49%  Similarity=0.811  Sum_probs=70.3

Q ss_pred             chhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccChHhHHHHHHHHhccccc
Q psy17074        341 KPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHPAAKTLVDIAKSQDAEI  412 (632)
Q Consensus       341 ~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP~akll~~~a~~q~~~~  412 (632)
                      ++++..|++||..|+++|++||||+||+|||+++.|+++|||||+||++++.++||.++++++++++|++++
T Consensus         1 ~~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~   72 (243)
T d1a6db1           1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFV   72 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCC
T ss_pred             ChHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999999999999999999999999999999999999999999999988

>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.60  E-value=2.4e-15  Score=141.57  Aligned_cols=123  Identities=18%  Similarity=0.264  Sum_probs=106.1

Q ss_pred             eEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q psy17074        482 GVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQV  557 (632)
Q Consensus       482 Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~v  557 (632)
                      ||.|++||.||||.    +|...++||+|+++|..+             ++.+++.++           ++.+.+.+.||
T Consensus         1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki-------------~~~~~i~p~-----------Le~~~~~~rPL   56 (184)
T d1sjpa2           1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV-------------STVKDLLPL-----------LEKVIGAGKPL   56 (184)
T ss_dssp             EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCB-------------CCSTTTHHH-----------HHHHHTTTCCE
T ss_pred             CCccCcCccCcccccCCCCCEEEecCCEEEEecCcc-------------CcHHHHHHH-----------HHHhhccCCcE
Confidence            89999999999995    366789999999999985             455666554           88999999999


Q ss_pred             EEEeCCccHHHHHHHHHC------CcEEEecCC-----chhHHHHHHHcCCeEee-----cccCCCCCCCeeeeEEEEEE
Q psy17074        558 VLSKLPIGDVATQYFADR------DMFCAGRVP-----EEDLKRTMKACGGAVMT-----TAHDLNDSVLGTCAVFDERQ  621 (632)
Q Consensus       558 vi~~~~I~~~al~~L~~~------~I~~v~~v~-----~~~L~rIa~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~  621 (632)
                      ||++++|++.|++.|..|      +++||+.|+     ++.|++||.+|||++++     ++++++.++||+|+++.+  
T Consensus        57 lIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~i--  134 (184)
T d1sjpa2          57 LIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV--  134 (184)
T ss_dssp             EEEESCBCHHHHHHHHHHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSSCCTTTSEEEEEEEE--
T ss_pred             EEEcchhhHHHHHHHHHHHhcCchheecccCCCCCcchHHHHHHHHHHhCCEEecccccccccccchhhCCeeeEEEE--
Confidence            999999999999999986      489999996     68899999999999998     478889999999999976  


Q ss_pred             EcCeEEEEec
Q psy17074        622 IGSERDTLNR  631 (632)
Q Consensus       622 ig~~~~~~~~  631 (632)
                       ..++.+++.
T Consensus       135 -tk~~T~ii~  143 (184)
T d1sjpa2         135 -TKDETTIVE  143 (184)
T ss_dssp             -CSSCEEEEE
T ss_pred             -ecCceEEec
Confidence             555655553

>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=6.5e-16  Score=144.30  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             EeEEEecccCCCCCc----CCceeecCceEEEecccchhhhccCCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy17074        481 DGVSFKKTFAYAGFE----MQPKTYKNPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKLDKIHASGAQ  556 (632)
Q Consensus       481 ~Giv~~~~~~~~~~~----~m~~~~~n~kIll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~  556 (632)
                      +||.||+||.||||.    +|...++||+||++|.+|.             +.+++.++           ++.+.+.+.|
T Consensus         1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~-------------~~~~i~p~-----------Le~~~~~~~P   56 (176)
T d1ioka2           1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS-------------SLQPMVPL-----------LESVIQSQKP   56 (176)
T ss_dssp             CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-------------CCCC----------------------CCC
T ss_pred             CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccC-------------cHHHHHHH-----------HHHHHhcCCc
Confidence            699999999999995    4667899999999999964             55566544           8888889999


Q ss_pred             EEEEeCCccHHHHHHHHHCC------cEEEecCC-----chhHHHHHHHcCCeEeec-----ccCCCCCCCeeeeEEEEE
Q psy17074        557 VVLSKLPIGDVATQYFADRD------MFCAGRVP-----EEDLKRTMKACGGAVMTT-----AHDLNDSVLGTCAVFDER  620 (632)
Q Consensus       557 vvi~~~~I~~~al~~L~~~~------I~~v~~v~-----~~~L~rIa~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~  620 (632)
                      |+|++.+|++.|++.|..|.      ++||+.|+     ++.|++||.+|||++++.     +++++.++||+|+++.+ 
T Consensus        57 LlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~~~~~~LG~a~kv~v-  135 (176)
T d1ioka2          57 LLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI-  135 (176)
T ss_dssp             CEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEE-
T ss_pred             EEEEecCCCHHHHHHHHHHHhcCCceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhhCCHHHCceeeEEEE-
Confidence            99999999999999999873      79999995     678999999999999974     78889999999999976 


Q ss_pred             EEcCeEEEEecC
Q psy17074        621 QIGSERDTLNRE  632 (632)
Q Consensus       621 ~ig~~~~~~~~~  632 (632)
                        ..++.+++.|
T Consensus       136 --tk~~T~ii~g  145 (176)
T d1ioka2         136 --NKDNTTIVDG  145 (176)
T ss_dssp             --CSSCEEEESC
T ss_pred             --ecCceEEEcC
Confidence              5666666643

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.54  E-value=6.7e-16  Score=132.12  Aligned_cols=96  Identities=23%  Similarity=0.275  Sum_probs=86.7

Q ss_pred             hHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCC
Q psy17074        420 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAG  493 (632)
Q Consensus       420 ~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~  493 (632)
                      |++.|.++|+|+|+||+.+.+.++|++|+++|+..+..      .+|+++|+|.+..||++.||++++|+++++   |+ 
T Consensus         2 D~e~L~~va~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~~g~~~~d~~~I~i~k~~Ggs~~dS~lv~G~vl~k---~~-   77 (105)
T d1a6da3           2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISAVSILI---RG-   77 (105)
T ss_dssp             CHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESCEEEEE---CC-
T ss_pred             cHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHhccccCCCceecHHHhhhhhccCCChhheeeeeccceec---cC-
Confidence            57889999999999999999999999999999999962      478899999999999999999999999987   34 


Q ss_pred             CcCCceeecCceEEEecccchhhhccCC
Q psy17074        494 FEMQPKTYKNPKIALLNIELELKAERDN  521 (632)
Q Consensus       494 ~~~m~~~~~n~kIll~~~~Le~~~~~~~  521 (632)
                        .||+.++|+||+++|++++..+++.+
T Consensus        78 --~mp~~~~~~kialld~~~~~~~te~~  103 (105)
T d1a6da3          78 --GTDHVVSEVERALNDAIRVVAITKED  103 (105)
T ss_dssp             --SSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcccCCcCeeEecchhhccccccc
Confidence              38999999999999999998776654

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.52  E-value=8.6e-16  Score=132.12  Aligned_cols=95  Identities=25%  Similarity=0.278  Sum_probs=85.7

Q ss_pred             hHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEEecccCCCC
Q psy17074        420 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAG  493 (632)
Q Consensus       420 ~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~  493 (632)
                      +++.|.++|+|+|+||+.+.+.++|++|+++|+..+..      .+|+++|+|++..||++.||++++|++|++.   + 
T Consensus         5 D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~Iki~K~~Ggsv~dS~lv~G~vl~k~---~-   80 (107)
T d1q3qa3           5 DEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVKAVTILIR---G-   80 (107)
T ss_dssp             CHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEEEEE---E-
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhcccCCCcccchHHEEEEEecCCChhhCEEEccEEEEcc---C-
Confidence            57889999999999999999999999999999999962      4678899999999999999999999999984   3 


Q ss_pred             CcCCceeecCceEEEecccchhhhccC
Q psy17074        494 FEMQPKTYKNPKIALLNIELELKAERD  520 (632)
Q Consensus       494 ~~~m~~~~~n~kIll~~~~Le~~~~~~  520 (632)
                        .||+.++|+||+++||+|+++..+.
T Consensus        81 --~mp~~i~n~ki~lld~~le~~~~~~  105 (107)
T d1q3qa3          81 --GTEHVIDEVERALEDAVKVVKDVME  105 (107)
T ss_dssp             --SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcccCCcCEeeccCcHHHHhhcc
Confidence              3899999999999999999876544

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.2e-15  Score=151.76  Aligned_cols=76  Identities=22%  Similarity=0.382  Sum_probs=72.6

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.++|..+++++..|+++|++||||+|+||||.+..|.+.|||||+||++++++.||    .++++.+++.+|++++
T Consensus         5 ~~fg~~ar~~~l~gi~~l~~~v~~tlGp~G~~v~i~~~~g~~~ITkDg~TI~~~i~~~~~~e~~~a~l~~~~a~~~~~~~   84 (252)
T d1ioka1           5 VKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEA   84 (252)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGC
T ss_pred             ccCCHHHHHHHHHHHHHHHHhHHhccCCCcCeEEEEcCCCCceEEcCCceeeeccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999999999999999    6999999999999988

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=6e-16  Score=154.09  Aligned_cols=140  Identities=12%  Similarity=0.107  Sum_probs=119.4

Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccccc
Q psy17074        162 RGGAEQFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQPKT  241 (632)
Q Consensus       162 rG~t~~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip~~  241 (632)
                      .|.++..+.+-.++..|++......+..| ++||||.+.++++..|......+++++.|      +.++ .+|++.|.++
T Consensus       108 ~G~~p~~i~~g~~~a~~~v~~~l~~~a~~-i~~~g~~al~~~~~~l~~~~~~~~d~~~G------~~iv-~~Al~~p~~~  179 (252)
T d1ioka1         108 AGMNPMDLKRGIDVATAKVVEAIKSAARG-IVVGGGVALVQGAKVLEGLSGANSDQDAG------IAII-RRALEAPMRQ  179 (252)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTTCBC-EEETTTHHHHHHGGGGGSCCCSSHHHHHH------HHHH-HHHTTHHHHH
T ss_pred             cCCCcchhhhhHHHHHHHHHHHHHHhcCC-CCCchHHhhHHHHHHHHhhhcccchHHHH------HHHH-HHHHHHHHHH
Confidence            48888888877777777777777777778 99999999999999887765555555444      3555 9999999999


Q ss_pred             cc-CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        242 YK-NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       242 La-NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      ++ |+|.++..++.++.... +..+|||+  .+++|+||++.||+||+   +++|++|+|++.+|||+|++|++.
T Consensus       180 i~~naG~dg~~vv~~~~~~~-~~~~g~~~--~~~~~g~~~~~GiidP~kVt~~al~~A~sva~~lltte~~i~~~  251 (252)
T d1ioka1         180 IAENAGVDGAVVAGKVRESS-DKAFGFNA--QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEK  251 (252)
T ss_dssp             HHHHHTSCHHHHHHHHHSCC-STTEEEET--TTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred             HHhccCCCcceEEEeecccC-cCCEEEEc--eeeeEeeeecccccCcHHHHHHHHHHHHhhhhHHHhhceeeecC
Confidence            97 99999999999987643 45689999  99999999999999999   899999999999999999999875

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.9e-14  Score=143.08  Aligned_cols=76  Identities=21%  Similarity=0.422  Sum_probs=72.5

Q ss_pred             ccCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccccCh----HhHHHHHHHHhccccc
Q psy17074        337 NSQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDIVHP----AAKTLVDIAKSQDAEI  412 (632)
Q Consensus       337 ~~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i~hP----~akll~~~a~~q~~~~  412 (632)
                      ..+|.++|..+++++..|+++|++||||+|++|||.+..|.+.|||||+||+++++++||    .++++++++.++++.+
T Consensus         5 ~~fg~dar~~ll~gi~~la~~v~~TLGP~g~~~~i~~~~g~~~iTkDg~ti~~~i~~~d~~e~~~a~~~~~~a~~~~~~~   84 (252)
T d1kp8a1           5 VKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAA   84 (252)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhhHHhccCCCCCeEEEEcCCCCeEEEecchheeecccccchHHHHHHHHHHHHHHhhhHHh
Confidence            347889999999999999999999999999999999999999999999999999999999    7999999999999887

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.46  E-value=1.7e-15  Score=130.13  Aligned_cols=92  Identities=23%  Similarity=0.338  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcc------cCCCCcEEEEEecCCCcccceeEEeEEE-----ec
Q psy17074        419 EYRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDD------LLPLNMIGIKKVAGGALEDSLLVDGVSF-----KK  487 (632)
Q Consensus       419 ~~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~------~~~~~~I~I~ki~Gg~~~dS~li~Giv~-----~~  487 (632)
                      .+++.|.++|+|+|+||+.+.+.++|++|+++|+..|.+      .+|+++|+|.+..||++.||++++|+++     ++
T Consensus         3 ~D~e~L~~va~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~~~~~~~d~~~IkI~k~~Ggs~~dS~li~G~v~~~~~~~k   82 (107)
T d1a6db3           3 DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGET   82 (107)
T ss_dssp             THHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEESS
T ss_pred             chHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhcccCCCcccCHHHeEEEeecCCChhhcEEEeccceeeccCCc
Confidence            367899999999999999999999999999999999952      4678899999999999999999999776     44


Q ss_pred             ccCCCCCcCCceeecCceEEEecccch
Q psy17074        488 TFAYAGFEMQPKTYKNPKIALLNIELE  514 (632)
Q Consensus       488 ~~~~~~~~~m~~~~~n~kIll~~~~Le  514 (632)
                      ...++   .||++++|+ |++++|+||
T Consensus        83 ~~~~~---~Mpk~i~n~-I~lld~~LE  105 (107)
T d1a6db3          83 EHVVD---EMERSITDS-LHVVASALE  105 (107)
T ss_dssp             HHHHH---HHHHHHHHH-HHHHHHHHH
T ss_pred             eeccC---CCCccccCc-EEEEecCCc
Confidence            44445   489999998 999999987

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.39  E-value=6e-15  Score=147.15  Aligned_cols=140  Identities=22%  Similarity=0.248  Sum_probs=117.6

Q ss_pred             CCCh-hhHHHHHHHHHHHHHHHHHHHhCCeEEecCChhHHHHHHHHhhhccC-CCccccCCCCCcceeeecccccccccc
Q psy17074        163 GGAE-QFLEETERSLHDAIMIVRRTIRNHAVVAGGGAIEMELSKALRDYSGL-GDKVRTGHPSDNSFHAISPDGFEMQPK  240 (632)
Q Consensus       163 G~t~-~~l~E~~~~i~Dal~~~~~a~~~~~vvpGGGa~e~~ls~~L~~~~~~-~~~~~~g~~~~~~~~~~~a~ALe~ip~  240 (632)
                      |.++ .+.+.++.+..+++..++....+. ++||||++|++++..+..++.. .+.      +++++++| ++||+.+|+
T Consensus       110 G~~p~~i~~g~~~a~~~~~~~l~~~~~~~-~~~~~g~~ei~~a~~l~~~a~~~~~~------~~~a~~~~-a~Al~~Ip~  181 (258)
T d1q3qa1         110 NIHPSIITKGYALAAEKAQEILDEIAIRA-VLPAGGAPEIELAIRLDEYAKQVGGK------EALAIENF-ADALKIIPK  181 (258)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHCEEE-EEECTTHHHHHHHHHHHHHHHHHCHH------HHHHHHHH-HHHTTHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCchHHHHHHHHHHhhhcccchH------HHHHHHHH-HHhccchhh
Confidence            4443 445778888888888888876666 8999999999999999988732 232      45577887 999999999


Q ss_pred             ccc-CCCCchhhHHHHHHhccC--CCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        241 TYK-NPKIALLNIELELKAERD--NAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       241 ~La-NaG~~~~~v~~~l~~~~~--~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      +|+ |+|+|+.+++.+++..|.  +.+.|+|.  ..|.+.||.+.|||||+   .++++.|++.+.++|++|++|+..
T Consensus       182 ~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv--~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         182 TLAENAGLDTVEMLVKVISEHKNRGLGIGIDV--FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHCTTEEEET--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             hhhhhcCCccceehhhhhhhcccCCCceEEEE--ECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence            998 999999999999986553  33479999  89999999999999999   889999999999999999999753

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=3.1e-12  Score=127.08  Aligned_cols=75  Identities=27%  Similarity=0.396  Sum_probs=71.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhhccCCCccceEEEcCCCCeEEccChHHHHhhccc----cChHhHHHHHHHHhccccc
Q psy17074        338 SQGKPQLISNINACQAVVDAVRTTLGPRGMDKLIVDQNGKSTISNDGATIMKLLDI----VHPAAKTLVDIAKSQDAEI  412 (632)
Q Consensus       338 ~~~~~~~~~ni~~~~~la~~vktslGP~G~~kmI~~~~g~~~ITnDG~tIlk~l~i----~hP~akll~~~a~~q~~~~  412 (632)
                      .+++++|..+++++..|+++|++||||+|+|+||.+..|.+.|||||.||++++++    +||.++++.+++.++++.+
T Consensus         5 ~f~~~ar~~l~~gv~~la~av~~tlGP~G~~v~i~~~~g~~~itkdg~ti~~~i~l~d~~e~~~a~~~~~~~~~~~~~~   83 (255)
T d1we3a1           5 VFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVA   83 (255)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhHHHHHHHHhcccCCCcCeEEEEcCCCCceEecchhhhhhhccccchhhhhHHHHHHHhhhhhHHHh
Confidence            46788999999999999999999999999999999999999999999999999998    5788999999999999887

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.2e-12  Score=129.75  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=110.5

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHhC---CeEEecCChhHHHHHHHHhhhccCCCccccCCCCCcceeeeccccccccc
Q psy17074        163 GGAEQFLEETERSLHDAIMIVRRTIRN---HAVVAGGGAIEMELSKALRDYSGLGDKVRTGHPSDNSFHAISPDGFEMQP  239 (632)
Q Consensus       163 G~t~~~l~E~~~~i~Dal~~~~~a~~~---~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~g~~~~~~~~~~~a~ALe~ip  239 (632)
                      |.++..   +++.++.|...+...+++   + +.||++...++++..+......+++++.|      ...+ .+||+.|.
T Consensus       109 G~~p~~---i~~gi~~a~~~v~~~L~~~s~~-i~~~~~~~~v~~~~~~~~~k~~n~d~~iG------~~Iv-~~Al~~p~  177 (252)
T d1kp8a1         109 GMNPMD---LKRGIDKAVTVAVEELKALSVG-VVAGGGVALIRVASKLADLRGQNADQNVG------IKVA-LRAMEAPL  177 (252)
T ss_dssp             TCCHHH---HHHHHHHHHHHHHHHHHHHCBC-EEETTTHHHHHHHHHTTTCCCSSHHHHHH------HHHH-HHHTTHHH
T ss_pred             CCcchh---hhhhhhhHHHHHHHHHHhccee-eccCchhhhhHHHHHhhhhcccCccHHHh------HHHH-HHHHHHHH
Confidence            555544   444566666666665554   7 99999999999999887766555555443      3555 89999999


Q ss_pred             cccc-CCCCchhhHHHHHHhccCCCccccccccccchhHhHHHHhHHHHH---HHHHHhhchhheeccccccccccc
Q psy17074        240 KTYK-NPKIALLNIELELKAERDNAEIRLDSVEEYQKVVDAEWKILYEKL---DKIHASGAQVVLSKLPIGDVATQY  312 (632)
Q Consensus       240 ~~La-NaG~~~~~v~~~l~~~~~~~~~G~d~~~~~~~~~d~~~~gI~Dp~---~~~l~~a~~va~~~l~~~~ii~~~  312 (632)
                      ++++ |+|.++..++.++...  +..+|||+  .++.|+||+++|++||+   +.++++|++++.++|++|++|+++
T Consensus       178 ~~i~~nag~~g~~~~~~v~~~--~~~~g~~~--~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~  250 (252)
T d1kp8a1         178 RQIVLNCGEEPSVVANTVKGG--DGNYGYNA--ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDL  250 (252)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHS--CTTEEEET--TTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred             HHHHHhhhhcccccceeeeec--CCCeeEEE--EEEEEEEEEeeccCCcceeccHhhhhheeccceeEeecccccCC
Confidence            9998 9999999999998764  34589999  99999999999999999   889999999999999999999986

>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=1.4e-10  Score=103.92  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.+.++...+.+.||+|++++|+++|++.|..|++           |+|+..+++.|+|||.+|||++++     ++++
T Consensus        41 ~ilp~Le~~~~~~rPLlIIA~di~~eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~v~~~~~g~~l~~  120 (145)
T d1srva_          41 ELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN  120 (145)
T ss_dssp             HHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGG
T ss_pred             HHHHHHHHHHHhCCcEEEEeCccCHHHHHHHHHHHhcCceEEEEEeCCCccHHHHHHHhhhhhhhCCEeeccccCccccc
Confidence            467888899999999999999999999999998743           666777899999999999999997     4677


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEec
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSG  150 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~  150 (632)
                      ++.++||+|++|   .+++++++++.|
T Consensus       121 ~~~~~LGsa~kv---~vtkd~T~ii~G  144 (145)
T d1srva_         121 ATLSMLGRAERV---RITKDETTIVGG  144 (145)
T ss_dssp             CCGGGCEEEEEE---EECSSCEEEEEE
T ss_pred             CCHHHCCcccEE---EEeCCccEEeCC
Confidence            888999999999   889999988876

>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.87  E-value=1.3e-09  Score=101.89  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.+.++.+.+.+.||+|++++|+++|++.|..|.+           |+|+..+++.|+|||.+|||++++     ++++
T Consensus        41 ~i~p~Le~~~~~~rPLlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaPgfG~~r~~~L~DlA~~TGa~vi~~~~g~~l~~  120 (184)
T d1sjpa2          41 DLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN  120 (184)
T ss_dssp             TTHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHTTSSCCEEEECSSCHHHHHHHHHHHHHHHTCCEEBTTTTBCSSS
T ss_pred             HHHHHHHHhhccCCcEEEEcchhhHHHHHHHHHHHhcCchheecccCCCCCcchHHHHHHHHHHhCCEEecccccccccc
Confidence            456778899999999999999999999999999733           667777899999999999999998     5778


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHHH
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAIM  181 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~  181 (632)
                      ++.++||+|++|   .+++++++++.+            +.++..++++...+...+.
T Consensus       121 ~~~~~LG~~~kv---~itk~~T~ii~~------------~g~~~~I~~Ri~~Lk~~l~  163 (184)
T d1sjpa2         121 ADLSLLGKARKV---VVTKDETTIVEG------------AGDTDAIAGRVAQIRQEIE  163 (184)
T ss_dssp             CCTTTSEEEEEE---EECSSCEEEEEE------------CCCHHHHHHHHHHHHHHHH
T ss_pred             cchhhCCeeeEE---EEecCceEEecC------------CCCHHHHHHHHHHHHHHHH
Confidence            899999999999   777777666654            2344455555555554444

>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=5.9e-10  Score=103.35  Aligned_cols=106  Identities=14%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.++++.+.+.+.||+|++++|++.|++.|..|.+           |+|+..+++.|+|||.+|||++++     ++++
T Consensus        42 ~i~p~Le~~~~~~~PLlIIA~di~~~aL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~LeDlA~~tGa~vi~~~~g~~l~~  121 (176)
T d1ioka2          42 PMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLEN  121 (176)
T ss_dssp             C-----------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHHHhcCCceEEEEeCCCCCcHHHHHHHHHHHhhCCEEEecccCCChhh
Confidence            356778888889999999999999999999999854           677777899999999999999997     4788


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEeccCCCceEEEEecCCChhhHHHHHHHHHHHH
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSGCKNARTCTIIVRGGAEQFLEETERSLHDAI  180 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~~~i~Dal  180 (632)
                      ++.++||+|++|   .++++.++++.|            +.++..++++.+.++..+
T Consensus       122 ~~~~~LG~a~kv---~vtk~~T~ii~g------------~g~~~~i~~Ri~~Lk~~i  163 (176)
T d1ioka2         122 VTIDMLGRAKKV---SINKDNTTIVDG------------AGEKAEIEARVSQIRQQI  163 (176)
T ss_dssp             --CTTSEEEEEE---EECSSCEEEESC------------CCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHCceeeEE---EEecCceEEEcC------------CCCHHHHHHHHHHHHHHH
Confidence            899999999999   777777666654            335556666665555544

>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.1e-09  Score=102.95  Aligned_cols=88  Identities=15%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCcEEEEecCcChhHHHHHHHCCc-----------eEEEeCCchhHHHHHHHhCCEEec-----cccC
Q psy17074         60 ILYEKLDKIHASGAQVVLSKLPIGDVATQYFADRDM-----------FCAGRVPEEDLKRTMKACGGAVMT-----TAHD  123 (632)
Q Consensus        60 ~i~~~~~~i~~~g~~lvi~~~~I~~~al~~l~~~~I-----------~~~~~v~~~~l~~ia~~tGa~ii~-----~l~~  123 (632)
                      .+.+.++.+.+.+.||+|++++|+++|++.|..|.+           |+|+..+++.|+|||.+|||++++     ++++
T Consensus        49 ~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~  128 (193)
T d1kida_          49 EMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEK  128 (193)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGG
T ss_pred             HHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhhccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhccccccc
Confidence            456777888889999999999999999999999833           677778899999999999999998     4678


Q ss_pred             CCCCCCCCcceEEEEEEcceEEEEEec
Q psy17074        124 LNDSVLGTCAVFDERQIGSERFNVFSG  150 (632)
Q Consensus       124 l~~~~lG~~~~v~~~~i~~~~~~~~~~  150 (632)
                      ++.++||+|++|   .+++++++++.+
T Consensus       129 ~~~~~LG~~~kv---~itk~~T~ii~g  152 (193)
T d1kida_         129 ATLEDLGQAKRV---VINKDTTTIIDG  152 (193)
T ss_dssp             CCGGGCEEEEEE---EECSSCEEEEEE
T ss_pred             CCHhHcCcccEE---EEecCceEEEcC
Confidence            889999999999   777766666554

>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.02  E-value=3.5e-07  Score=73.93  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=60.9

Q ss_pred             hHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccCCCCCcC---
Q psy17074        420 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFAYAGFEM---  496 (632)
Q Consensus       420 ~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~~~~~~~---  496 (632)
                      +++.+.++|..|      + .+..+++|+++|+.+|+++   +.|.+....+. -...++++|+.|+++|.+|+|.+   
T Consensus         4 ~~e~i~~VAtIS------a-~D~~iG~lIa~A~~kVG~d---GvItvEe~~~~-~t~le~veG~~~d~Gy~Sp~fvtd~k   72 (89)
T d1sjpa3           4 TKEQIAATAAIS------A-GDQSIGDLIAEAMDKVGNE---GVITVEESNTF-GLQLELTEVAVIKAGAATEVELKERK   72 (89)
T ss_dssp             SHHHHHHHHHHH------T-TCHHHHHHHHHHHHHSCTT---SCEEEEEESSS-SEEEEEESEEEEEEECSSHHHHHHHH
T ss_pred             CHHHHHHhhhee------c-CCHHHHHHHHHHHHhcCCC---CceEEEecccc-ceEEEEEEEEEecCCccCceEEcccH
Confidence            467788999876      3 4678999999999999876   77888755542 23468999999999999999853   


Q ss_pred             --CceeecCceEEEec
Q psy17074        497 --QPKTYKNPKIALLN  510 (632)
Q Consensus       497 --m~~~~~n~kIll~~  510 (632)
                        |...++||+||+.+
T Consensus        73 ~r~e~~l~~p~ili~d   88 (89)
T d1sjpa3          73 HRIEDAVRNAKAAVEE   88 (89)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHhCceEeeec
Confidence              22236788887654

>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00024  Score=56.28  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             hHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCcccceeEEeEEEecccC
Q psy17074        420 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALEDSLLVDGVSFKKTFA  490 (632)
Q Consensus       420 ~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~dS~li~Giv~~~~~~  490 (632)
                      +++.|.++|..|      + +++.+++|+++|+.+|+.+   +.|.|....+.. ...++++|+.|+++|.
T Consensus         2 d~~~i~~VAtIS------A-nD~~iG~lIAeA~~kVG~d---GvItVEes~t~~-t~levveG~~~~~s~~   61 (86)
T d1we3a3           2 DRKAIEEVATIS------A-NDPEVGKLIADAMEKVGKE---GIITVEESKSLE-TELKFVGVAVIRVGAA   61 (86)
T ss_dssp             SHHHHHHHHHHH------H-TCHHHHHHHHHHHHTTCTT---SEEEEEECSSSS-CEEEEECEEEEEECCS
T ss_pred             CHHHHhhheeee------c-CCHHHHHHHHHHHHHcCCC---ceEEEEecCCCC-eEEEEEEeeeccccee
Confidence            467889999876      3 4678999999999999976   778888444322 2357999999987653

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00019  Score=58.62  Aligned_cols=65  Identities=12%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc
Q psy17074        420 YRGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE  495 (632)
Q Consensus       420 ~~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~  495 (632)
                      +.+.+.++|..|-      +++..+++|+++|+.+|+.+   +.|.+.  .|.+..+ ..+++||.|+++|.+|+|.
T Consensus         4 ~~~~i~~VAtISa------n~D~~iG~lIa~a~~~vg~d---Gvitve--e~~~~~~~~~ivEG~~~d~G~vS~~fv   69 (97)
T d1kp8a3           4 DSKAIAQVGTISA------NSDETVGKLIAEAMDKVGKE---GVITVE--DGTGLQDELDVVERVAKLAGGVAVIKV   69 (97)
T ss_dssp             SHHHHHHHHHHHT------TSCHHHHHHHHHHHHHHCTT---SEEEEE--CCSSSSCEEEEEHHHHHHHHCEEEEEC
T ss_pred             CHHHHhhheeEec------CCcHHHHHHHHHHHHHhccc---ceEEEe--ccccchhHHHHHHHHHhhcCCccceee
Confidence            4678999999874      45688999999999999976   677777  3434433 5799999999999998764

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.29  E-value=0.00011  Score=59.98  Aligned_cols=64  Identities=9%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             HHHHHHHHhhhcCCccccchhhHHHHHHHHHHHHhcccCCCCcEEEEEecCCCccc-ceeEEeEEEecccCCCCCc
Q psy17074        421 RGLLEKCAATALSSKLIHQQKGFFSKMVVDAVMSLDDLLPLNMIGIKKVAGGALED-SLLVDGVSFKKTFAYAGFE  495 (632)
Q Consensus       421 ~~~L~~va~t~l~sK~~~~~~~~l~~li~~A~~~v~~~~~~~~I~I~ki~Gg~~~d-S~li~Giv~~~~~~~~~~~  495 (632)
                      .+.+.++|..|      +++++.+++++.+|+.+|+.+   +.|.|.+..  +..+ ..+++||.|+++|.+|+|.
T Consensus         5 ~~~i~~VAtIS------an~d~~IG~lIa~a~~~Vg~~---GvitvEe~~--~~~t~~~ivEG~~~~~GyiS~~fv   69 (97)
T d1ioka3           5 SSEVAQVGTIS------ANGESFIGQQIAEAMQRVGNE---GVITVEENK--GMETEVEVVERVAKLAGGVAVIRV   69 (97)
T ss_dssp             TTTTTHHHHHT------TTTCHHHHHHHHHHHHHHCTT---SCCCCEECS--SSCCEEEEEHHHHTTSSCEEEEEE
T ss_pred             HHHhheeeeee------cCCchHHHHHHHHHHHHhCCC---ceEEecccc--chhhhhhHhhhhhhhhcccccccc
Confidence            44577888876      445688999999999999866   667777444  3333 4799999999999988764

>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.57  E-value=0.023  Score=45.82  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074        152 KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN  189 (632)
Q Consensus       152 ~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~  189 (632)
                      ..+..+.+.+.++++.+++|.+.+++|||+++|+|+++
T Consensus        60 ~~GyiS~~fv~~~t~~E~~ekk~~veDAl~a~raa~~e   97 (97)
T d1ioka3          60 LAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE   97 (97)
T ss_dssp             TSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccCCCceeeeeeccceeecCHHHHHHHhcC
Confidence            44678999999999999999999999999999999864

>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.074  Score=42.74  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=44.0

Q ss_pred             CCCcceEEEEEEc--ceEEEEEecc--CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHHHhC
Q psy17074        129 LGTCAVFDERQIG--SERFNVFSGC--KNARTCTIIVRGGAEQFLEETERSLHDAIMIVRRTIRN  189 (632)
Q Consensus       129 lG~~~~v~~~~i~--~~~~~~~~~~--~~~~~~TI~lrG~t~~~l~E~~~~i~Dal~~~~~a~~~  189 (632)
                      .|.-+.|.+..-.  ...+-+.+|.  ..+..+.+.+.+.++.++++.+.+++|||+++|+|+++
T Consensus        33 vg~dGvitvee~~~~~~~~~ivEG~~~d~G~vS~~fvt~~te~E~~ekk~~veDaL~a~~aA~~e   97 (97)
T d1kp8a3          33 VGKEGVITVEDGTGLQDELDVVERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEE   97 (97)
T ss_dssp             HCTTSEEEEECCSSSSCEEEEEHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccceEEEeccccchhHHHHHHHHHhhcCCccceeecCcchhhhhhceeEEechHHHHHHHhcC
Confidence            4666666443221  1233344442  23578999999999999999999999999999999864